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Hi, the error is regarding a specific file (is.lib) which isn’t being found. Can you verify that the file is there after you updated Repbase? Use the command:
<div class="">“ls -l <span style="font-family: Calibri; font-size: 14px; line-height: 23px;" class="">/home/softwares/RepeatMasker/Libraries/20170127/general/is.lib</span><font face="Calibri" class=""><span style="font-size: 14px; line-height: 23px;" class="">”</span></font></div>
<div class=""><font face="Calibri" class=""><span style="font-size: 14px; line-height: 23px;" class=""><br class="">
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<div class=""><font face="Calibri" class=""><span style="font-size: 14px; line-height: 23px;" class="">Thanks,</span></font></div>
<div class=""><font face="Calibri" class=""><span style="font-size: 14px; line-height: 23px;" class="">Daniel Ence</span></font></div>
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<div class="">On May 3, 2017, at 8:15 AM, 卢金原Jim <<a href="mailto:jim03ljy@126.com" class="">jim03ljy@126.com</a>> wrote:</div>
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<div class=""><span style="font-size: 14px;" class="">Hi, I'm a newbie of maker.</span></div>
<div class=""><span style="font-size: 14px;" class="">I met some errors in Repeatmasker step.</span></div>
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<div class=""><span style="font-size: 14px;" class="">The error is here:</span></div>
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<div style="margin: 0in; font-size: 10.5pt;" class=""><span style="font-family: Calibri; font-size: 14px;" class="">NCBIBlastSearchEngine::search: Error...compressed subject database (/home/softwares/RepeatMasker/Libraries/20170127/general/is.lib) does not
exist!</span></div>
<div style="margin: 0in; font-size: 10.5pt;" class=""><span style="font-family: Calibri; font-size: 14px;" class=""><br class="">
</span></div>
<div style="margin: 0in; font-size: 10.5pt;" class=""><font face="Calibri" class="">I tried ncbi+blast 2.5.0 version and 2.6.0 version as the path to blast, both have the same error.</font></div>
<div style="margin: 0in; font-size: 10.5pt;" class=""><font face="Calibri" class="">And when I use the command as "maker -R", which skips the repeatmasker step, the maker could work.</font></div>
<div style="margin: 0in; font-size: 10.5pt;" class=""><font face="Calibri" class="">I checked the former similar errors reported by another user and he solved the problem by updating the RepBase.</font></div>
<div style="margin: 0in; font-size: 10.5pt;" class=""><font face="Calibri" class="">So,</font></div>
<div style="margin: 0in; font-size: 10.5pt;" class=""><font face="Calibri" class=""> I deleted and re-installed the RepeatMasker, updated the RepBase, also installed RMblast.</font></div>
<div style="margin: 0in; font-size: 10.5pt;" class=""><font face="Calibri" class="">The error is the same.</font></div>
<div style="margin: 0in; font-size: 10.5pt;" class=""><font face="Calibri" class=""><br class="">
</font></div>
<div style="margin: 0in; font-size: 10.5pt;" class=""><font face="Calibri" class="">I'm stuck in the problem now.</font></div>
<div style="margin: 0in; font-size: 10.5pt;" class=""><span style="color: rgb(34, 34, 34); font-family: Arial, Helvetica, sans-serif; font-size: 14px;" class="">Would highly appreciate any help - thanks!</span></div>
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<div class=""><font class="Apple-style-span" face="'Times New Roman'" size="4" style="font-size: 18px; "><span style="font-size: 14px;" class="">Jinyuan Lu</span></font></div>
<span style="font-family: 微软雅黑; line-height: 27px; font-size: 14px;" class="">Shanghai Jiao Tong University</span><font class="Apple-style-span" face="'lucida Grande', Verdana"><br class="">
</font><span style="font-family: "lucida Grande", Verdana; line-height: 23px; font-size: 14px;" class="">No. 800 Dong Chuan Road,Minhang District, Shanghai, P.R. China</span>
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