<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">This is rather vague —> “<span style="font-size: 14.666666984558105px;" class="">crashed the computer cluster</span>”<div class=""><br class=""></div><div class="">Do you have a specific error?</div><div class=""><br class=""></div><div class="">—Carson</div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On Aug 14, 2017, at 12:59 PM, zl c <<a href="mailto:chzelin@gmail.com" class="">chzelin@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><p class="MsoNormal"><span style="font-size:11pt" class="">Hello,<span class=""></span></span></p><div class=""><span style="font-size:11pt" class=""><span class=""> </span></span><br class="webkit-block-placeholder"></div><p class="MsoNormal"><span style="font-size:11pt" class="">I ran maker 3.0 with openmpi 2.0.2
and it crashed the computer cluster. I attached the log file. Could you help me
to solve the problem?<span class=""></span></span></p><div class=""><span style="font-size:11pt" class=""><span class=""> </span></span><br class="webkit-block-placeholder"></div><p class="MsoNormal"><span style="font-size:11pt" class="">CMD:<span class=""></span></span></p><p class="MsoNormal"><span style="font-size:11pt" class="">export
LD_PRELOAD=/usr/local/OpenMPI/2.0.2/gcc-6.3.0/lib/libmpi.so<span class=""></span></span></p><p class="MsoNormal"><span style="font-size:11pt" class="">export
OMPI_MCA_mpi_warn_on_fork=0<span class=""></span></span></p><p class="MsoNormal"><span style="font-size:11pt" class="">mpiexec -mca btl ^openib -n
$SLURM_NTASKS maker -c 1 –base genome -g
genome.fasta<span class=""></span></span></p><div class=""><span style="font-size:11pt" class=""><span class=""> </span></span><br class="webkit-block-placeholder"></div><p class="MsoNormal"><span style="font-size:11pt" class="">Thanks,<span class=""></span></span></p><p class="MsoNormal"><span style="font-size:11pt" class="">Zelin Chen<span class=""></span></span></p><div class=""><span style="font-size:11pt" class=""><span class=""> </span></span><br class="webkit-block-placeholder"></div>
<div class=""><div class="gmail_signature"><div dir="ltr" class=""><div dir="ltr" class=""><div class=""><div class="">--------------------------------------------</div>Zelin Chen [<a href="mailto:chzelin@gmail.com" target="_blank" class="">chzelin@gmail.com</a>] Ph.D.</div><div class=""><br class=""></div><div class="">NIH/NHGRI<br class=""></div><div class=""><div class=""><span style="font-family: Verdana, Geneva, sans-serif; font-size: 12px;" class="">Building 50, Room 5531</span><br style="font-family: Verdana, Geneva, sans-serif; font-size: 12px;" class=""><span style="font-family: Verdana, Geneva, sans-serif; font-size: 12px;" class="">50 SOUTH DR, MSC 8004 </span><br style="font-family: Verdana, Geneva, sans-serif; font-size: 12px;" class=""><span style="font-family: Verdana, Geneva, sans-serif; font-size: 12px;" class="">BETHESDA, MD 20892-8004</span></div></div></div></div></div></div>
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<span id="cid:8EC7467F-C13C-403B-AE2E-97762F28B1B0@hsd1.ut.comcast.net."><run05.mpi.o47346077></span>_______________________________________________<br class="">maker-devel mailing list<br class=""><a href="mailto:maker-devel@box290.bluehost.com" class="">maker-devel@box290.bluehost.com</a><br class="">http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org<br class=""></div></blockquote></div><br class=""></div></body></html>