<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Sorry. MAKER does not currently support alternate codon tables.<div class=""><br class=""></div><div class="">—Carson</div><div class=""><br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Nov 30, 2017, at 11:20 PM, Yu-Hsuan Cheng <<a href="mailto:aircoolsky@gmail.com" class="">aircoolsky@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><div style="font-size:12.8px" class=""><font class="">Hi,<br class=""></font></div><div style="font-size:12.8px" class=""><font class=""><br class=""></font></div><div style="font-size:12.8px" class=""><font class="">This is YuHsuan Cheng, who is a PhD student from Taiwan. I want to use the MAKER combining with SNAP to annotate ciliates genome. The genetic code for ciliates is different from other species, so I am wondering that if there is any option in MAKER I can change the genetic code table? I also asked Dr. Korf about this issue, he said SNAP has no way to change the genetic code table. I will use Augustus combining with Maker later on. </font></div><div style="font-size:12.8px" class=""><font class="">The pipeline I used previously is as followed.</font></div><div class="gmail-yj6qo gmail-ajU" style="margin:2px 0px 0px;font-size:12.8px"><div id="gmail-:26f" class="gmail-ajR" tabindex="0"><img class="gmail-ajT" src="https://ssl.gstatic.com/ui/v1/icons/mail/images/cleardot.gif"></div></div><div class="gmail-adL" style="font-size:12.8px"><span class="gmail-im"><div style="font-size:12.8px" class=""><font class="">1. MAKER (Hints from proteome and RNAseq)</font></div><div style="font-size:12.8px" class=""><font class="">2. MAKER to Zff </font></div><div style="font-size:12.8px" class=""><font class="">3. ~/bin/maker/exe/snap/<a href="http://hmm-assembler.pl/" target="_blank" class="">hmm-as<wbr class="">sembler.pl</a> snapFirst . > ../../snapFirst.hmm</font></div><div style="font-size:12.8px" class=""><font class="">and then used snapFirst.hmm as hints in MAKER</font></div><div style="font-size:12.8px" class=""><font class=""><br class=""></font></div><div style="font-size:12.8px" class=""><font class="">Look forward to your reply. Thank you.</font></div><div style="font-size:12.8px" class=""><font class=""><br class=""></font></div><div style="font-size:12.8px" class=""><font class="">Best wishes,</font></div><div style="font-size:12.8px" class=""><font class=""><br class=""></font></div><div style="font-size:12.8px" class=""><font class="">YuHsuan </font></div><div class=""><br class=""></div><div class=""><span style="font-family: Tahoma; font-size: 13px;" class="">Yu-Hsuan Cheng 鄭毓鋗</span><div style="font-family: Tahoma; font-size: 13px;" class="">Institute of Molecular Biology</div><div style="font-family: Tahoma; font-size: 13px;" class="">Academia Sinica</div><div style="font-family: Tahoma; font-size: 13px;" class="">128 Academia road, Section 2</div><div style="font-family: Tahoma; font-size: 13px;" class="">Nankang, Taipei 115</div><div style="font-family: Tahoma; font-size: 13px;" class="">Taiwan</div><div style="font-family: Tahoma; font-size: 13px;" class="">Phone:<a href="tel:+886%202%202789%209216" value="+886227899216" target="_blank" class="">+886-2-2789-9216</a> (Lab), <a href="tel:+886%20958%20216%20538" value="+886958216538" target="_blank" class="">+886-958-216-538</a> (Mobile phone)</div><div style="font-family: Tahoma; font-size: 13px;" class=""><a href="mailto:d02b48008@ntu.edu.tw" target="_blank" class="">d02b48008@ntu.edu.tw</a></div></div></span></div></div>
_______________________________________________<br class="">maker-devel mailing list<br class=""><a href="mailto:maker-devel@box290.bluehost.com" class="">maker-devel@box290.bluehost.com</a><br class="">http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org<br class=""></div></blockquote></div><br class=""></div></body></html>