<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">The FASTA file gets indexed by BioPerl using BerkleyDB. I’m guessing there is something odd about your input file and the database has run out of HASHes for indexing. You can google if there is a setting you can configure in BerkleyDB on Mac. But I suspect you are doing something like giving the raw reads from an mRNA-seq experiment or DNA sequencing to MAKER (resulting in billions of entrires to be indexed), which would be incorrect. MAKER can’t handle raw data. You must first assemble it using using like Trinity for example for mRNA.<div class=""><br class=""></div><div class="">Thanks,</div><div class="">Carson<br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Dec 7, 2017, at 8:53 AM, Scott Cain <<a href="mailto:scott@scottcain.net" class="">scott@scottcain.net</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">Hi Guinara,<div class=""><br class=""></div><div class="">I don't know (though my guess would be that you're running out of memory). I'm cc'ing the MAKER developer's mailing list to see if anybody on that list knows.</div><div class=""><br class=""></div><div class="">Scott</div><div class=""><br class=""></div></div><div class="gmail_extra"><br class=""><div class="gmail_quote">On Wed, Dec 6, 2017 at 8:36 PM, Gulnara Tagirdzhanova <span dir="ltr" class=""><<a href="mailto:tagirdzh@ualberta.ca" target="_blank" class="">tagirdzh@ualberta.ca</a>></span> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr" class="">Hello,<div class=""><br class=""></div><div class="">I got this error running maker on mac:</div><div class=""><br class=""></div><div class=""><span style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class="">STATUS: Parsing control files...</span><br style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class=""><span style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class="">STATUS: Processing and indexing input FASTA files...</span><br style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class=""><span style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class="">HASH: Out of overflow pages. Increase page size</span><br style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class=""><span style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class="">HASH: Out of overflow pages. Increase page size</span><br style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class=""><span style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class="">HASH: Out of overflow pages. Increase page size</span><br style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class=""><span style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class="">HASH: Out of overflow pages. Increase page size</span><br style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class=""><span style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class="">HASH: Out of overflow pages. Increase page size</span><br style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class=""><span style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class="">HASH: Out of overflow pages. Increase page size</span><br style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class=""><span style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class="">HASH: Out of overflow pages. Increase page size</span><br style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class=""><span style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class="">HASH: Out of overflow pages. Increase page size</span><br style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class=""><span style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class="">HASH: Out of overflow pages. Increase page size</span><br style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class=""><span style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class="">HASH: Out of overflow pages. Increase page size</span><br style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class=""><span style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class="">HASH: Out of overflow pages. Increase page size</span><br style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class=""><span style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class="">HASH: Out of overflow pages. Increase page size</span><br style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class=""><span style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class="">HASH: Out of overflow pages. Increase page size</span><br style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class=""><span style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class="">Filesize limit exceeded: 25</span></div><div class=""><font face="-apple-system, BlinkMacSystemFont, Roboto, Open Sans, Helvetica Neue, sans-serif" class=""><br class=""></font></div><div class=""><span style="font-family: -apple-system, BlinkMacSystemFont, Roboto, "Open Sans", "Helvetica Neue", sans-serif; font-size: 13px;" class=""></span><font face="-apple-system, BlinkMacSystemFont, Roboto, Open Sans, Helvetica Neue, sans-serif" class="">Is there anything that could solve it?</font></div><div class=""><font face="-apple-system, BlinkMacSystemFont, Roboto, Open Sans, Helvetica Neue, sans-serif" class=""><br class=""></font></div><div class=""><font face="-apple-system, BlinkMacSystemFont, Roboto, Open Sans, Helvetica Neue, sans-serif" class="">Thank you,</font></div><div class=""><font face="-apple-system, BlinkMacSystemFont, Roboto, Open Sans, Helvetica Neue, sans-serif" class="">Gulnara<br class=""></font><div class=""><br class=""></div><div class=""><br class=""></div></div></div>
</blockquote></div><br class=""><br clear="all" class=""><div class=""><br class=""></div>-- <br class=""><div class="gmail_signature" data-smartmail="gmail_signature">------------------------------------------------------------------------<br class="">Scott Cain, Ph. D. scott at scottcain dot net<br class="">GMOD Coordinator (<a href="http://gmod.org/" target="_blank" class="">http://gmod.org/</a>) 216-392-3087<br class="">Ontario Institute for Cancer Research</div>
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