<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Ence,<div class=""><br class=""></div><div class="">When I searched for “E/error” in the output file, here is what first showed up:</div><div class=""><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(246, 255, 249); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">Process::MpiChunk::__ANON__() called at /24-2/home/qliang/0.soft/maker/bin/../lib/E</span><span style="font-variant-ligatures: no-common-ligatures; color: #000000; background-color: #f6fff9" class="">rror</span><span style="font-variant-ligatures: no-common-ligatures" class="">.pm line 415</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(246, 255, 249); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> eval {...} called at /24-2/home/qliang/0.soft/maker/bin/../lib/E</span><span style="font-variant-ligatures: no-common-ligatures; color: #000000; background-color: #f6fff9" class="">rror</span><span style="font-variant-ligatures: no-common-ligatures" class="">.pm line 407</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(246, 255, 249); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> E</span><span style="font-variant-ligatures: no-common-ligatures; color: #000000; background-color: #f6fff9" class="">rror</span><span style="font-variant-ligatures: no-common-ligatures" class="">::subs::try(CODE(0x502bbb0), HASH(0x5007788)) called at /24-2/home/qliang/0.soft/maker/bin/../lib/Process/MpiChunk.pm line 4269</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(246, 255, 249); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> Process::MpiChunk::_go(Process::MpiChunk=HASH(0x50a1a18), "flow", HASH(0x50ad0f0), 2, 0) called at /24-2/home/qliang/0.soft/maker/bin/../lib/Process/MpiChunk.pm line 378</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(246, 255, 249); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> Process::MpiChunk::_flow(Process::MpiChunk=HASH(0x50a1a18), HASH(0x50ad0f0), 2, 0, Process::MpiTiers=HASH(0x4fb3350)) called at /24-2/home/qliang/0.soft/maker/bin/../lib/Process/MpiTiers.pm line 318</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(246, 255, 249); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> Process::MpiTiers::__ANON__() called at /24-2/home/qliang/0.soft/maker/bin/../lib/E</span><span style="font-variant-ligatures: no-common-ligatures; color: #000000; background-color: #f6fff9" class="">rror</span><span style="font-variant-ligatures: no-common-ligatures" class="">.pm line 415</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(246, 255, 249); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> eval {...} called at /24-2/home/qliang/0.soft/maker/bin/../lib/E</span><span style="font-variant-ligatures: no-common-ligatures; color: #000000; background-color: #f6fff9" class="">rror</span><span style="font-variant-ligatures: no-common-ligatures" class="">.pm line 407</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(246, 255, 249); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> E</span><span style="font-variant-ligatures: no-common-ligatures; color: #000000; background-color: #f6fff9" class="">rror</span><span style="font-variant-ligatures: no-common-ligatures" class="">::subs::try(CODE(0x50a9348), HASH(0x4ff0ec0)) called at /24-2/home/qliang/0.soft/maker/bin/../lib/Process/MpiTiers.pm line 338</span></div><div style="margin: 0px; font-size: 14px; line-height: normal; font-family: 'Andale Mono'; color: rgb(246, 255, 249); background-color: rgb(0, 0, 0);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""> Process::MpiTiers::_next_level(Process::MpiTiers=HASH(0x4fb3350)) called at /24-2/home/qliang/0.soft/maker/bin/../lib/Process/MpiTiers.pm line 179</span></div></div><div class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><br class=""></span></div><div class="">Is this what you may need?</div><div class=""><br class=""></div><div class="">Qihua</div><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On Jan 4, 2018, at 6:16 AM, Ence,daniel <<a href="mailto:d.ence@ufl.edu" class="">d.ence@ufl.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">Hi, Before we can give any help to debug it, we need the error messages. These should be in the same file that the “maker is finished” message is in. Look for the first error message (the one closest to the top of the file) and send that to the mailing list. <br class=""><br class="">Thanks,<br class="">Daniel <br class=""><br class=""><br class=""><blockquote type="cite" class="">On Jan 3, 2018, at 8:52 PM, Qihua Liang <<a href="mailto:qlian003@ucr.edu" class="">qlian003@ucr.edu</a>> wrote:<br class=""><br class="">Dear Maker Develop Team,<br class=""><br class="">I have successfully run Maker for several times before. But I came across a strange thing days ago when I ran Maker again on a different assembly with the same input files and settings.<br class=""><br class="">I saw the message of "Maker is now finished!!!” but got empty GFF3 and no fasta files. And then I checked the master_datastore_index.log and realized that there are a lot of “failed”s and “retry”s and “failed” again. What does this mean? Since I used same inputs as previous successful runs, could you provide some instructions on how to debug and solve it?<br class=""><br class="">Thank you so much<br class="">Qihua<br class="">_______________________________________________<br class="">maker-devel mailing list<br class=""><a href="mailto:maker-devel@box290.bluehost.com" class="">maker-devel@box290.bluehost.com</a><br class="">https://urldefense.proofpoint.com/v2/url?u=http-3A__box290.bluehost.com_mailman_listinfo_maker-2Ddevel-5Fyandell-2Dlab.org&d=DwIGaQ&c=pZJPUDQ3SB9JplYbifm4nt2lEVG5pWx2KikqINpWlZM&r=12jzlNvGVD0AlPJ4E7cTlw1Dvu6n9cb4kMCobJ28XPs&m=nUDCP_0kFOhDYlTHgOpWtf_zdL77aQFeQwYOGIQwP8c&s=9Z4T1hdtxOyIjpn6f70qhrQRuGsZxXdV-oLSJF1zGkY&e= <br class=""></blockquote><br class=""></div></div></blockquote></div><br class=""></div></body></html>