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<div style="orphans: 2; widows: 2;" class="">Hello,</div>
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<div style="orphans: 2; widows: 2;" class="">I am working on annotations for fungal genomes, using GenemarkES with —fungi for gene prediction. In earlier attempts, I did not use the training flag, and I did get the output gmhmm file. Now I have tried with
the training flag and do not get this file. In the /run/ directory I do get mod files ES_A.mod, ES_B.mod, and ES_C.mod, as well as ini.mod. Does one of these files work as the ES.mod file as in </div>
<div style="orphans: 2; widows: 2;" class="">"gmhmm=../train_genemark/es.mod #GeneMark HMM file” from <a href="http://weatherby.genetics.utah.edu/MAKER/wiki/index.php/The_MAKER_control_files_explained?" class="">http://weatherby.genetics.utah.edu/MAKER/wiki/index.php/The_MAKER_control_files_explained?</a> I
don’t find documentation of the genemarkES output online.</div>
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<div style="orphans: 2; widows: 2;" class="">Thank you.</div>
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<div style="orphans: 2; widows: 2;" class="">Jenni</div>
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