<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">The problem is your perl perl installation. It’s broken. I’m guessing<br class="">it’s a version installed by conda?<br class=""><br class="">The sys/types.h file is internal to perl itself (and will be bound to<br class="">the version of perl you are using - i.e. don’t use sys/types.h from a<br class="">different perl version). It’s used to map datatypes between perl and C.<br class="">If you search /powerapps/share/centos7/miniconda/ you may be able to<br class="">find it somewhere internally. You may be able to set it<br class="">with C_INCLUDE_PATH or CPLUS_INCLUDE_PATH once you find it . There may<br class="">be other environmental variables that must be set as well.<br class=""><br class="">The line inside the C code perl is running internally is something like<br class="">“#include<sys/type.h>”, so make sure the path you give to <br class="">C_INCLUDE_PATH<br class="">is the directory right before the /sys folder.<br class=""><br class="">Alternatively you may need to do this outside of conda.<br class=""><br class="">—Carson<br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Oct 17, 2018, at 8:27 AM, Lior Glick <<a href="mailto:liorglic@mail.tau.ac.il" class="">liorglic@mail.tau.ac.il</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="rtl" class=""><div class="gmail_default" style="font-family:tahoma,sans-serif" dir="ltr">Hello,</div><div class="gmail_default" style="direction:ltr;font-family:tahoma,sans-serif">I am trying to compile MAKER with Intel MPI.<br class=""></div><div class="gmail_default" style="direction:ltr;font-family:tahoma,sans-serif">We are using a cluster based on Intel x86_64 architecture and using lmod for environment variables.<br class=""></div><div class="gmail_default" style="direction:ltr;font-family:tahoma,sans-serif">All required dependencies have already been installed and the initial 'perl Build.PL' passes without issues (see attached).</div><div class="gmail_default" style="direction:ltr;font-family:tahoma,sans-serif">When running './Build install' it always fails to find 'sys/types.h' and exits (see additional attachment).</div><div class="gmail_default" style="direction:ltr;font-family:tahoma,sans-serif">The Build command probably searches for the '/usr/include/sys/types.h' file, but no matter which variable (INCLUDE, PERL5LIB etc...) I update with the required path (either '/usr/include' or '/usr/include/sys') - it keeps failing.</div><div class="gmail_default" style="direction:ltr;font-family:tahoma,sans-serif">I would appreciate your input.</div><div class="gmail_default" style="font-family:tahoma,sans-serif" dir="ltr">Thanks a lot!</div></div>
<span id="cid:f_jnd92nqu0"><Build.PL.out></span><span id="cid:f_jnd92nrh1"><Build_install.out></span>_______________________________________________<br class="">maker-devel mailing list<br class=""><a href="mailto:maker-devel@box290.bluehost.com" class="">maker-devel@box290.bluehost.com</a><br class="">http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org<br class=""></div></blockquote></div><br class=""></body></html>