<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><span style="font-size: 14px;" class="">DBD::Pg is optional. You should be able to say ’No’ to the question on whether you want to install optional modules during the Build step.</span><div class=""><br class=""></div><div class=""><span style="font-size: 14px;" class="">—Carson</span></div><div class=""><span style="font-size: 14px;" class=""><br class=""></span></div><div class=""><br class=""></div><div class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Mar 14, 2019, at 4:24 PM, Shaowen Jiang <<a href="mailto:sj2641@nyu.edu" class="">sj2641@nyu.edu</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">Dear MAKER2 admins:<div class=""><br class=""></div><div class="">Hi, I have read some tutorials for annotating a newly assembly genome and MAKER2 seems to be a very good and functional pipeline to me. So I am trying to use it to annotate a new assembly mammalian genome that our lab just generated. </div><div class="">But I was stuck while I was trying to install MAKER2 to our slurm HPC server.</div><div class=""><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 16px; margin-top: 0px; margin-bottom: 0px;" class="">I think the pipeline is trying to install several perl packages locally, but one of them called DBD::Pg requires the path of pg_config?</div><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 16px; margin-top: 0px; margin-bottom: 0px;" class="">screenshot as below</div><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 16px; margin-top: 0px; margin-bottom: 0px;" class=""><img src="https://mail.nyumc.org/owa/service.svc/s/GetFileAttachment?id=AAMkAGRmYzE3ZjExLThjMzItNGQxMS05OGM0LWU5NGExYjc5MWIyOQBGAAAAAACpVqbn7tYzQLifEebW8ukrBwBOgb%2BSxtBoSZE%2BEcmK9A6nAAAAAAEJAABOgb%2BSxtBoSZE%2BEcmK9A6nAABIPNfSAAABEgAQAJxsIfkGrDlCnJqHObyOOlI%3D&X-OWA-CANARY=eq6C4of-NkyZSuTGiLZzmFB44EDLqNYIpokNnT3FD-7d-ju9iHHAsU2ojV6u33160Jwb8mwQJS0." id="gmail-img64372" style="width: 750px; max-width: 750px; max-height: 253px;" class=""><br class=""></div></div><div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 16px; margin-top: 0px; margin-bottom: 0px;" class="">But I think our server doesn't have this path and I don't have root to install some other stuff, like <font face="Consolas,Menlo,Monaco,Lucida Console,Liberation Mono,DejaVu Sans Mono,Bitstream Vera Sans Mono,Courier New,monospace,sans-serif" size="1" color="#242729" class=""><span style="font-size:13px;background-color:rgb(239,240,241)" class="">libpq-dev or </span></font><font face="Arial,Helvetica Neue,Helvetica,sans-serif" size="2" color="#242729" style="font-size:small" class=""><span style="font-size:15px;background-color:rgb(239,240,241)" class="">PostgreSQL. </span></font></div><div style="margin-top:0px;margin-bottom:0px" class=""><font face="Arial,Helvetica Neue,Helvetica,sans-serif" size="2" color="#242729" style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: small;" class=""><span style="font-size:15px;background-color:rgb(239,240,241)" class="">Is that any other methods that can </span></font><font color="#242729" face="Arial, Helvetica Neue, Helvetica, sans-serif" class=""><span style="font-size:15px" class="">circle around that?</span></font></div><div style="margin-top:0px;margin-bottom:0px" class=""><font color="#242729" face="Arial, Helvetica Neue, Helvetica, sans-serif" class=""><span style="font-size:15px" class=""><br class=""></span></font></div><div style="margin-top:0px;margin-bottom:0px" class=""><font color="#242729" face="Arial, Helvetica Neue, Helvetica, sans-serif" class=""><span style="font-size:15px" class="">Any help or advice would be appreciated!</span></font></div><div style="margin-top:0px;margin-bottom:0px" class=""><font color="#242729" face="Arial, Helvetica Neue, Helvetica, sans-serif" class=""><span style="font-size:15px" class=""><br class=""></span></font></div><div style="margin-top:0px;margin-bottom:0px" class=""><font color="#242729" face="Arial, Helvetica Neue, Helvetica, sans-serif" class=""><span style="font-size:15px" class="">Thanks,</span></font></div><div style="margin-top:0px;margin-bottom:0px" class=""><font color="#242729" face="Arial, Helvetica Neue, Helvetica, sans-serif" class=""><span style="font-size:15px" class="">Shaowen</span></font></div></div>
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