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<p class="MsoNormal">Hey Dan,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">How’s life? What are you up to these days?<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">--mark<o:p></o:p></p>
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<p class="MsoNormal"><b><span style="font-size:12.0pt;color:black">From: </span></b><span style="font-size:12.0pt;color:black">maker-devel <maker-devel-bounces@yandell-lab.org> on behalf of "Ence,daniel" <d.ence@ufl.edu><br>
<b>Date: </b>Monday, May 13, 2019 at 7:21 AM<br>
<b>To: </b>Christian Ayala <Christian_jpg2@hotmail.com><br>
<b>Cc: </b>"maker-devel@yandell-lab.org" <maker-devel@yandell-lab.org><br>
<b>Subject: </b>Re: [maker-devel] Running out of time in MAKER<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Hi Christian, <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">If you restart maker on the same output directory, maker will start from where it left off and continue. You can also speed up your maker run by using it's MPI parallelization capabilities or by running multiple maker instances on the same
output directory. <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Hopefully this is helps, <o:p></o:p></p>
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<p class="MsoNormal">Daniel Ence<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Daniel Ence<o:p></o:p></p>
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<p class="MsoNormal">Postdoctoral Associate <o:p></o:p></p>
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<p class="MsoNormal">School of Forest Resources and Conservation<o:p></o:p></p>
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<p class="MsoNormal">University of Florida<o:p></o:p></p>
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<p class="MsoNormal">On Apr 30, 2019, at 2:42 PM, Christian Ayala <<a href="mailto:Christian_jpg2@hotmail.com">Christian_jpg2@hotmail.com</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="font-size:12.0pt">Good afternoon,<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt">I am trying to annotate some insect genomes using MAKER. MAKER is running in a system that uses a PBS scheduler and has a walltime of 120 hours. So , my jobs are running out of time and are killed before MAKER
finishes the annotation. Is there a way to resume a killed MAKER run?<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt">Thanks for your help.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt">Best regards,<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt">Christian Ayala-Ortiz<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:Helvetica">_______________________________________________<br>
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<p class="MsoNormal"><o:p> </o:p></p>
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