<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div class="">Dear Carson,</div><div class=""><br class=""></div>Reading this paper <span style="font-size: 10pt; font-family: SFRM1000;" class="">J. Armstrong, I. T. Fiddes, M. Diekhans, and B. Paten. Whole-Genome Alignment and
Comparative Annotation. </span><span style="font-size: 10pt; font-family: SFTI1000;" class="">Annu Rev Anim Biosci</span><span style="font-size: 10pt; font-family: SFRM1000;" class="">, Oct 2018. </span><div class="">I discovered that MAKER is running GeneWise (i.e table 4). Do they mixup with Exonerate, or it is something well hidden within MAKER and its documentation?</div><div class=""><br class=""></div><div class="">Best regards,</div><div class=""><br class=""></div><div class="">Jacques</div><div class="">
<div dir="auto" style="caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div dir="auto" style="caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div dir="auto" style="caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">-------------------------------------------------<br class="">Jacques Dainat, Ph.D.<br class="">NBIS (National Bioinformatics Infrastructure Sweden)<br class="">Genome Annotation Service<br class=""><a href="http://nbis.se/about/staff/jacques-dainat" class="">http://nbis.se/about/staff/jacques-dainat</a></div><div dir="auto" style="caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><a href="https://github.com/NBISweden/GAAS" class="">https://github.com/NBISweden/GAAS</a></div><div dir="auto" style="caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><a href="http://nbis.se" class="">http://nbis.se</a></div><div dir="auto" style="caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><br class="">—<span class="Apple-tab-span" style="white-space: pre;"> </span><b class="">Contact</b><span class="Apple-tab-span" style="white-space: pre;"> </span>— <br class=""><b class="">Address</b>: Uppsala University, Biomedicinska Centrum<br class="">Department of Medical Biochemistry Microbiology, Genomics<br class="">Husargatan 3, box 582<br class="">S-75123 Uppsala Sweden<br class=""><b class="">Phone</b>: +46 18 471 46 25</div></div></div>
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