<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Oct 1, 2019, at 7:59 AM, Emmanuel Nnadi <<a href="mailto:eennadi@gmail.com" class="">eennadi@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><div dir="ltr" class=""><div dir="ltr" class="">Hi Carson<div class=""><span style="font-family: -webkit-standard; font-size: inherit;" class="">I want marker to output into a directory /mnt/data/emmanuel/Makersupport. Please how can I make that?</span></div></div></div></div></div></blockquote><div><br class=""></div><div><br class=""></div><div><br class=""></div><div>From the usage statement —></div><div><br class=""></div><div> -base <string> Set the base name MAKER uses to save output files.<br class=""> MAKER uses the input genome file name by default.</div><div><br class=""></div><div><br class=""></div><br class=""><blockquote type="cite" class=""><div class=""><div dir="ltr" class=""><div dir="ltr" class=""><div dir="ltr" class=""><div class=""><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; min-height: 13px;" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class=""></div><p style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span></p><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; min-height: 13px;" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class=""></div><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">Also,</span></div><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; min-height: 13px;" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class=""></div><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; color: rgb(252, 50, 32);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">I added </span><span style="font-variant-ligatures:no-common-ligatures" class="">RepBaseRepeatMaskerEdition-20170127.tar into the directory </span><span style="font-variant-ligatures: no-common-ligatures;" class="">/home/emmanuel/maker/exe/RepeatMasker</span></div><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo; min-height: 13px;" class=""><span style="font-variant-ligatures:no-common-ligatures" class=""></span><br class=""></div><div style="margin: 0px; font-stretch: normal; font-size: 11px; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures:no-common-ligatures" class="">used tar xvf </span><span style="font-variant-ligatures:no-common-ligatures;color:rgb(252,50,32)" class="">RepBaseRepeatMaskerEdition-20170127.tar to unpack it. In my </span><span style="font-variant-ligatures:no-common-ligatures" class="">/home/emmanuel/maker/exe/RepeatMasker/Libraries I have RMRBSeqs.embl but running maker it tells me it repbase is not installed.</span></div></div></div></div></div></div></blockquote><div><br class=""></div><div><br class=""></div><div>After uncaring RepBase you have to run the ./configure script with rmblast installed and it will create the needed blast indexes and libraries</div><div><br class=""></div><div><div>RepeatMasker.lib</div><div>RepeatMaskerLib.embl</div><div>RepeatMasker.lib.nhr</div><div>RepeatMasker.lib.nin</div><div>RepeatMasker.lib.nsq</div><div>RepeatMasker.lib.xnd</div><div>RepeatMasker.lib.xni</div><div>RepeatMasker.lib.xns</div><div>RepeatMasker.lib.xnt</div><div>RepeatPeps.lib</div><div>RepeatPeps.lib.phr</div><div>RepeatPeps.lib.pin</div><div>RepeatPeps.lib.psq</div><div>RepeatPeps.lib.xpd</div><div>RepeatPeps.lib.xpi</div><div>RepeatPeps.lib.xps</div><div>RepeatPeps.lib.xpt</div></div><div><br class=""></div><div><br class=""></div><div>—Carson</div><div><br class=""></div></div></body></html>