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<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Hi,</div>
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<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
I'm running maker_functional_gff and got this error:</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span style="font-family: Verdana, Geneva, Helvetica, Arial, sans-serif; font-size: 13.44px; background-color: rgb(255, 255, 255); display: inline !important">Can't use string ("") as a HASH ref while "strict refs" in use at /root/maker/bin/maker_functional_gff
line 55, <$IN> line 3.</span><br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
I've checked the gff file and there are no missing "ID=" tags, what could be the problem?</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
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<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
head of blastpoutput:</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">lacu_11543-RA<span>
</span>A4GSN8<span> </span>49.643<span> </span>2099<span> </span>951<span> </span>
36<span> </span>1<span> </span>2026<span> </span>1<span> </span>2066<span> </span>
0.0<span> </span>1724</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">lacu_11544-RA<span>
</span>F4IF36<span> </span>75.473<span> </span>1268<span> </span>273<span> </span>
6<span> </span>33<span> </span>1263<span> </span>29<span> </span>1295<span> </span>
0.0<span> </span>1949</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">lacu_11548-RA<span>
</span>O81123<span> </span>51.316<span> </span>380<span> </span>144<span> </span>
10<span> </span>24<span> </span>401<span> </span>15<span> </span>355<span> </span>
2.29e-119<span> </span>353</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">lacu_11549-RA<span>
</span>Q9SA32<span> </span>60.767<span> </span>339<span> </span>130<span> </span>
3<span> </span>328<span> </span>664<span> </span>58<span> </span>395<span> </span>
1.54e-141<span> </span>421</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">lacu_11547-RA<span>
</span>Q9SLK2<span> </span>72.493<span> </span>349<span> </span>96<span> </span>0<span>
</span>1<span> </span>349<span> </span>1<span> </span>349<span> </span>0.0<span> </span>
518</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">lacu_11558-RA<span>
</span>Q9LTV6<span> </span>76.689<span> </span>296<span> </span>69<span> </span>0<span>
</span>5<span> </span>300<span> </span>3<span> </span>298<span> </span>2.21e-158<span>
</span>446</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">lacu_11557-RA<span>
</span>Q9C9U5<span> </span>40.441<span> </span>272<span> </span>145<span> </span>
6<span> </span>866<span> </span>1134<span> </span>746<span> </span>1003<span> </span>
7.55e-50<span> </span>196</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">lacu_11552-RA<span>
</span>Q96GG9<span> </span>44.715<span> </span>246<span> </span>128<span> </span>
3<span> </span>58<span> </span>296<span> </span>2<span> </span>246<span> </span>2.30e-73<span>
</span>229</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">lacu_11560-RA<span>
</span>Q42961<span> </span>89.375<span> </span>480<span> </span>47<span> </span>2<span>
</span>2<span> </span>480<span> </span>4<span> </span>480<span> </span>0.0<span> </span>
855</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">lacu_11561-RA<span>
</span>Q42962<span> </span>91.022<span> </span>401<span> </span>36<span> </span>0<span>
</span>1<span> </span>401<span> </span>1<span> </span>401<span> </span>0.0<span> </span>
731</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures"><br>
</span></p>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
head of gff:</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">##gff-version 3</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">Linkage_group_5<span>
</span>.<span> </span>contig<span> </span>1<span> </span>30484050<span> </span>.<span>
</span>.<span> </span>.<span> </span>ID=Linkage_group_5;Name=Linkage_group_5</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">Linkage_group_5<span>
</span>maker<span> </span>gene<span> </span>10601<span> </span>29761<span> </span>
.<span> </span>+<span> </span>.<span> </span>ID=lacu_11543;Name=lacu_11543;Alias=maker-Linkage_group_5-pred_gff_est2genome-gene-0.188;score=1168;</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">Linkage_group_5<span>
</span>maker<span> </span>mRNA<span> </span>10601<span> </span>29761<span> </span>
6483<span> </span>+<span> </span>.<span> </span>ID=lacu_11543-RA;Parent=lacu_11543;Name=lacu_11543-RA;Alias=maker-Linkage_group_5-pred_gff_est2genome-gene-0.188-mRNA-1;_AED=0.00;_QI=105|1|1|1|1|1|48|246|2043;_eAED=0.00;score=1168;</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">Linkage_group_5<span>
</span>maker<span> </span>exon<span> </span>10601<span> </span>11011<span> </span>
.<span> </span>+<span> </span>.<span> </span>ID=lacu_11543-RA:exon:0;Parent=lacu_11543-RA;</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">Linkage_group_5<span>
</span>maker<span> </span>exon<span> </span>11129<span> </span>11275<span> </span>
.<span> </span>+<span> </span>.<span> </span>ID=lacu_11543-RA:exon:1;Parent=lacu_11543-RA;</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">Linkage_group_5<span>
</span>maker<span> </span>exon<span> </span>11403<span> </span>11501<span> </span>
.<span> </span>+<span> </span>.<span> </span>ID=lacu_11543-RA:exon:2;Parent=lacu_11543-RA;</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">Linkage_group_5<span>
</span>maker<span> </span>exon<span> </span>11835<span> </span>11963<span> </span>
.<span> </span>+<span> </span>.<span> </span>ID=lacu_11543-RA:exon:3;Parent=lacu_11543-RA;</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">Linkage_group_5<span>
</span>maker<span> </span>exon<span> </span>12054<span> </span>12146<span> </span>
.<span> </span>+<span> </span>.<span> </span>ID=lacu_11543-RA:exon:4;Parent=lacu_11543-RA;</span></p>
<p style="margin: 0px; font: 11px Menlo; margin: 0px"><span style="font-variant-ligatures: no-common-ligatures; font-variant-ligatures: no-common-ligatures">Linkage_group_5<span>
</span>maker<span> </span>exon<span> </span>12240<span> </span>12305<span> </span>
.<span> </span>+<span> </span>.<span> </span>ID=lacu_11543-RA:exon:5;Parent=lacu_11543-RA;</span></p>
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