<div dir="ltr"><div dir="ltr"><div style="color:rgb(0,0,0)">Please I am trying to to follow this tutorial <a href="http://weatherby.genetics.utah.edu/MAKER/wiki/index.php/Repeat_Library_Construction-Advanced">http://weatherby.genetics.utah.edu/MAKER/wiki/index.php/Repeat_Library_Construction-Advanced</a>. </div><div style="color:rgb(0,0,0)"><br></div><div style="color:rgb(0,0,0)">Running this step <span style="font-family:monospace,monospace;font-size:14px;white-space:pre-wrap;background-color:rgb(248,249,250)">perl DIR_CRL/CRL_Step2.pl --step1 CRL_Step1_Passed_Elements.txt  --repeatfile seqfile.out99 --resultfile seqfile.result99 \</span><pre style="font-family:monospace,monospace;background-color:rgb(248,249,250);border:1px solid rgb(234,236,240);padding:1em;white-space:pre-wrap;line-height:1.3em;font-size:14px">--sequencefile seqfile --removed_repeats   CRL_Step2_Passed_Elements.fasta</pre><pre style="font-family:monospace,monospace;background-color:rgb(248,249,250);border:1px solid rgb(234,236,240);padding:1em;white-space:pre-wrap;line-height:1.3em;font-size:14px">the expected output ought to be <span style="font-family:sans-serif;background-color:rgb(255,255,255);color:rgb(34,34,34)">CRL_Step2_Passed_Elements.fasta</span></pre><p style="margin:0.5em 0px;line-height:inherit;font-family:sans-serif;font-size:14px"><span style="font-size:medium">Repeat_*.fasta files</span><br></p><p style="margin:0.5em 0px;line-height:inherit;font-family:sans-serif;font-size:14px"><br></p><p style="margin:0.5em 0px;line-height:inherit;font-family:sans-serif;font-size:14px">But am only getting <span style="font-size:medium">CRL_Step2_Passed_Elements.fasta with no </span><span style="font-size:medium">Repeat_*.fasta files </span></p><p style="margin:0.5em 0px;line-height:inherit;font-family:sans-serif;font-size:14px"><span style="font-size:medium"><br></span></p><p style="margin:0.5em 0px;line-height:inherit;font-family:sans-serif;font-size:14px"><span style="font-size:medium">Please what could be the problem?</span></p></div><div><div dir="ltr" class="gmail_signature"><div dir="ltr"><div><div dir="ltr">Nnadi Nnaemeka Emmanuel,Ph.D<div>Department of Microbiology,</div><div>Faculty of Natural and Applied Science,</div><div>Plateau State University, Bokkos, Plateau State, Nigeria.</div><div>+2348068124819</div><div>Publications: </div><div> <a href="https://www.researchgate.net/profile/Emmanuel_Nnadi/publications" target="_blank">https://www.researchgate.net/profile/Emmanuel_Nnadi/publications</a></div></div></div></div></div></div></div></div>