<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div class="">MAKER on its own can run under MPI to run on multiple cores or across multiple machines on a local computer cluster. It can also restart as long as you run in the same directory. However when controlled by Galaxy I do not know if the restart is possible since Galaxy controls the run directory. Similarly I don’t know if Galaxy can launch it via MPI.</div><div class=""><br class=""></div><div class="">—Carson</div><div class=""><br class=""></div><br class=""><div><blockquote type="cite" class=""><div class=""><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;" class=""><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(127, 127, 127, 1.0);" class=""><b class="">From: </b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class="">Jessica Grant <<a href="mailto:jgrant@smith.edu" class="">jgrant@smith.edu</a>><br class=""></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;" class=""><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(127, 127, 127, 1.0);" class=""><b class="">Subject: </b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class=""><b class="">Possible to restart maker run through a local galaxy?</b><br class=""></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;" class=""><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(127, 127, 127, 1.0);" class=""><b class="">Date: </b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class="">August 6, 2020 at 12:06:57 PM MDT<br class=""></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;" class=""><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(127, 127, 127, 1.0);" class=""><b class="">To: </b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class=""><a href="mailto:maker-devel@yandell-lab.org" class="">maker-devel@yandell-lab.org</a><br class=""></span></div><br class=""><br class=""><meta http-equiv="Content-Type" content="text/html; charset=us-ascii" class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi,<div class=""><br class=""></div><div class="">I have a local galaxy instance and installed maker through the tool shed. I have been running it on a large genome and it had been running on one core for a few weeks. Then my IT guys needed to take the server down so stopped the run. </div><div class=""><br class=""></div><div class="">I wonder if I can restart it - I have all the intermediate files in my <b style="color: rgb(82, 48, 225); font-family: Menlo; font-size: 11px;" class="">/galaxy/database/jobs_directory</b> and also, is there a way to run it on multiple cores?</div><div class=""><br class=""></div><div class="">Thank you!</div><div class=""><br class=""></div><div class="">Jessica</div></div><br class=""><br class=""><br class=""><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;" class=""><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(127, 127, 127, 1.0);" class=""><b class="">From: </b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class=""><a href="mailto:maker-devel-request@yandell-lab.org" class="">maker-devel-request@yandell-lab.org</a><br class=""></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;" class=""><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(127, 127, 127, 1.0);" class=""><b class="">Subject: </b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class=""><b class="">confirm 6c52cdc17b7f8c4718d930157625ecc62c32c681</b><br class=""></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;" class=""><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif; color:rgba(127, 127, 127, 1.0);" class=""><b class="">Date: </b></span><span style="font-family: -webkit-system-font, Helvetica Neue, Helvetica, sans-serif;" class="">August 6, 2020 at 12:07:14 PM MDT<br class=""></span></div><br class=""><br class="">If you reply to this message, keeping the Subject: header intact,<br class="">Mailman will discard the held message. Do this if the message is<br class="">spam. If you reply to this message and include an Approved: header<br class="">with the list password in it, the message will be approved for posting<br class="">to the list. The Approved: header can also appear in the first line<br class="">of the body of the reply.<br class=""><br class=""></div></blockquote></div><br class=""></body></html>