<div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr">Hi Carson,<div>Please I will like to know how to combine the gff results obtained using  <span style="font-family:Courier;font-size:11px">ipr_update_gff and the gff obtained using </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">maker_functional_gff?  </span></div><div><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">For example the </span><span style="color:rgb(0,0,0);font-family:-webkit-standard;font-size:medium">ipr_update_gff adds the following to the gff </span></div><div><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px"><br></span></div><div><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">scaffold_252</span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">    </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">maker </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">  </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">gene</span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">    </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">22873 </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">  </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">47327 </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">  </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">. </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">      </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">- </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">      </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">. </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">      </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">ID=CR513_001491;Name=CR513_001491;Alias=augustus_masked-scaffold_252-processed-gene-0.0;Dbxref=InterPro:IPR000719,Pfam:PF00069;Ontology_term=GO:0004672,GO:0005524,GO:0006468; </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">      </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">ID=CR513scaffold_252</span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">    </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">maker </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">  </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">mRNA</span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">    </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">22873 </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">  </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">47327 </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">  </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">. </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">      </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">- </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">      </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">. </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">      </span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px">ID=CR513_001491-RA;Parent=CR513_001491;Name=CR513_001491-RA;Alias=augustus_masked-scaffold_252-processed-gene-0.0-mRNA-1;Dbxref=InterPro:IPR000719,Pfam:PF00069;Ontology_term=GO:0004672,GO:0005524,GO:0006468;_AED=0.50;_QI=0|0.08|0.04|0.16|1|1|25|0|927;_eAED=0.50;_merge_warning=1;</span><span style="color:rgb(0,0,0);font-family:Menlo;font-size:11px"> </span></div><div><font color="#000000" face="Menlo"><span style="font-size:11px"><br></span></font></div><div><font color="#000000" face="Menlo"><span style="font-size:11px">While </span></font></div><div><span style="color:rgb(0,0,0);font-family:-webkit-standard;font-size:medium">maker_functional_gff</span></div><div><span style="color:rgb(0,0,0)"></span><p style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)"><span style="font-variant-ligatures:no-common-ligatures">scaffold_252    maker   gene    22873   47327   .       -       .       ID=CR513_001491;Name=CR513_001491;Alias=augustus_masked-scaffold_252-processed-gene-0.0;Note=Similar to IREH1: Putative serine/threonine protein kinase IREH1 (Fragment) (Mucuna pruriens OX%3D157652);scaffold_252    maker   mRNA    22873   47327   .       -       .       ID=CR513_001491-RA;Parent=CR513_001491;Name=CR513_001491-RA;Alias=augustus_masked-scaffold_252-processed-gene-0.0-mRNA-1;_AED=0.50;_QI=0|0.08|0.04|0.16|1|1|25|0|927;_eAED=0.50;_merge_warning=1;Note=Similar to IREH1: Putative serine/threonine protein kinase IREH1 (Fragment) (Mucuna pruriens OX%3D157652); (Fragment) (Mucuna pruriens OX%3D157652);</span></p><p style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)"><span style="font-variant-ligatures:no-common-ligatures"><br></span></p><p style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">Is there a way of making maker reflect the GO and pfam alongside the functional names?</p><p style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)"><br></p><p style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)"><br></p><p style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">Also, how can this be reflected in the corresponding protein and transcript fastas?</p><p style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)"><br></p><p style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)">Thanks for your support.</p><p style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)"><br></p><p style="margin:0px;font-stretch:normal;font-size:11px;line-height:normal;font-family:Menlo;color:rgb(0,0,0)"><br></p><div><div dir="ltr" class="gmail_signature"><div dir="ltr"><div><div dir="ltr">Nnaemeka Emmanuel Nnadi,Ph.D<div>Department of Microbiology,</div><div>Faculty of Natural and Applied Science,</div><div>Plateau State University, Bokkos, Plateau State, Nigeria.</div><div>+2348068124819</div><div>Publications: </div><div> <a href="https://www.researchgate.net/profile/Emmanuel_Nnadi/publications" target="_blank">https://www.researchgate.net/profile/Emmanuel_Nnadi/publications</a></div></div></div></div></div></div></div></div></div></div></div></div></div></div>