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<p class="MsoNormal"><span style="font-size:12.0pt;color:black">Hi Carson and all,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">I ran Maker 3.01.03 on a chromosome-level mollusc genome assembly using some evidence I previously generated with Funannotate and BRAKER2, but Maker is not completing successfully. Every scaffold
in the datastore_index.log file has both STARTED and FAILED statuses. I can't figure out where the problem lies, though. Running ./Build status indicates all the dependencies are there (I’m not using MPI). The run.log files just ends with "DIED RANK 0" and
"DIED COUNT 3." Is there a way to tell which (if any) of the dependencies is misbehaving here (they all seem to run fine independently) or if my evidence .gff3 files are not correctly formatted?<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt">I’ve uploaded a<span style="color:black"> zipped sample output folder as well as my config files</span> and the datastore.log file here:
<a href="http://genomes.ua.edu/Kocot/2021-09-10_Maker/">http://genomes.ua.edu/Kocot/2021-09-10_Maker/</a><span style="color:black">
</span><o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">Any guidance on what might be the issue would be greatly appreciated.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">Thanks!<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;color:black">Kevin</span><o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal" style="margin-top:7.5pt;background:white"><b><span style="font-size:12.0pt;font-family:"Helvetica",sans-serif;color:#990000">Kevin M. Kocot<br>
</span></b><span style="font-size:8.0pt;font-family:"Helvetica",sans-serif;color:black">he/him/his</span><b><span style="font-size:12.0pt;font-family:"Helvetica",sans-serif;color:#990000"><o:p></o:p></span></b></p>
<p class="MsoNormal" style="margin-bottom:7.5pt;background:white"><span style="font-size:11.5pt;font-family:"Helvetica",sans-serif;color:black">Associate Professor & Curator of Invertebrates<br>
Department of Biological Sciences & Alabama Museum of Natural History<br>
</span><span style="font-size:10.5pt;font-family:"Helvetica",sans-serif;color:black"><a href="https://www.ua.edu/"><span style="color:maroon;text-decoration:none">The University of Alabama</span></a> <br>
307 Mary Harmon Bryant Hall<br>
Box 870344<br>
Tuscaloosa, AL 35487<br>
phone <a href="tel:205-348-4052"><span style="color:black">205-348-4052</span></a>
</span><span style="font-size:10.5pt;font-family:"Helvetica",sans-serif;color:maroon">|</span><span style="font-size:10.5pt;font-family:"Helvetica",sans-serif;color:black"> fax 205-348-4039 <br>
<a href="mailto:kmkocot@ua.edu"><span style="color:black">kmkocot@ua.edu</span></a> </span><span style="font-size:10.5pt;font-family:"Helvetica",sans-serif;color:maroon">|</span><span style="font-size:10.5pt;font-family:"Helvetica",sans-serif;color:black"> <a href="http://www.kocotlab.com/"><span style="color:black">www.kocotlab.com</span></a><br>
</span><span style="font-family:"Helvetica",sans-serif;color:black"><a href="https://uasystem.zoom.us/j/3755490727"><span style="color:black">https://uasystem.zoom.us/j/3755490727</span></a></span><o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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