<html><head><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">You have a number of initial GFF3 related errors. I think one of your input files has an issue somewhere. Likely a truncated line in the GFF3. You will have to find and fix the feature with issues, then delete any *.db files under the *.maker.output directory before restarting. That will force it to rebuild the database that maps the current GFF3 files.<div class=""><br class=""></div><div class="">Thanks,</div><div class="">Carson</div><div class=""><br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On Oct 23, 2022, at 12:08 AM, WIIE AY <<a href="mailto:aywiiee@gmail.com" class="">aywiiee@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><div class="">Hi,<br class=""><br class=""></div>Thanks for this excellent software.<br class="">However, when we annotated a rice genome (chr1-12) using Maker/3.01.03, the first round ran very well.<br class="">When we added the snap and gmhmm models in the second round, only chr04 always failed in 12 chromosomes.<br class="">Here is my chr4_run.log, stderr.out.(Maybe need maker_opts.ctl.)<br class="">Looking forward to your reply.<br class=""> <div class=""><div class="gmail_chip gmail_drive_chip" style="width:396px;height:18px;max-height:18px;background-color:rgb(245,245,245);padding:5px;font-family:arial;font-weight:bold;font-size:13px;border:1px solid rgb(221,221,221);line-height:1"><a href="https://drive.google.com/file/d/1TCjAPWGbQSMA4g49wQWySzROvsCY_rRg/view?usp=drive_web" target="_blank" style="display:inline-block;max-width:366px;overflow:hidden;text-overflow:ellipsis;white-space:nowrap;text-decoration-line:none;padding:1px 0px;border:none" aria-label="maker_opts.ctl" class=""><img style="vertical-align: bottom; border: none;" src="https://ssl.gstatic.com/docs/doclist/images/icon_10_generic_list.png" class=""> <span dir="ltr" style="vertical-align:bottom;text-decoration:none" class="">maker_opts.ctl</span></a><img src="x-msg://ssl.gstatic.com/ui/v1/icons/common/x_8px.png" style="opacity: 0.55; cursor: pointer; float: right; position: relative; top: -1px; display: none;" class=""></div><div class="gmail_chip gmail_drive_chip" style="width:396px;height:18px;max-height:18px;background-color:rgb(245,245,245);padding:5px;font-family:arial;font-weight:bold;font-size:13px;border:1px solid rgb(221,221,221);line-height:1"><a href="https://drive.google.com/file/d/1li8Fn-AjOFfbLmcF_PFwpI6Eq-q9qeGs/view?usp=drive_web" target="_blank" style="display:inline-block;max-width:366px;overflow:hidden;text-overflow:ellipsis;white-space:nowrap;text-decoration-line:none;padding:1px 0px;border:none" aria-label="run.log" class=""><img style="vertical-align: bottom; border: none;" src="https://ssl.gstatic.com/docs/doclist/images/icon_10_generic_list.png" class=""> <span dir="ltr" style="vertical-align:bottom;text-decoration:none" class="">run.log</span></a><img src="x-msg://ssl.gstatic.com/ui/v1/icons/common/x_8px.png" style="opacity: 0.55; cursor: pointer; float: right; position: relative; top: -1px; display: none;" class=""></div><div class="gmail_chip gmail_drive_chip" style="width:396px;height:18px;max-height:18px;background-color:rgb(245,245,245);padding:5px;font-family:arial;font-weight:bold;font-size:13px;border:1px solid rgb(221,221,221);line-height:1"><a href="https://drive.google.com/file/d/1hEYAcxgyLNeuWCHOcKQbpwyCesfWDHbg/view?usp=drive_web" target="_blank" style="display:inline-block;max-width:366px;overflow:hidden;text-overflow:ellipsis;white-space:nowrap;text-decoration-line:none;padding:1px 0px;border:none" aria-label="stderr_73012967.err" class=""><img style="vertical-align: bottom; border: none;" src="https://ssl.gstatic.com/docs/doclist/images/icon_10_generic_list.png" class=""> <span dir="ltr" style="vertical-align:bottom;text-decoration:none" class="">stderr_73012967.err</span></a><img src="x-msg://ssl.gstatic.com/ui/v1/icons/common/x_8px.png" style="opacity: 0.55; cursor: pointer; float: right; position: relative; top: -1px; display: none;" class=""></div>THANKS <br class="">Peter</div></div>
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