[maker-devel] gene predictors in MARKER
Huanle
elzedliu at gmail.com
Tue Apr 17 17:22:53 MDT 2012
I am using MAKER to annotate a recently assembled plant genome.
Hi There,
I am using MAKER to annotate a recently assembled plant genome.
I followed the tutorial here: http://gmod.org/wiki/MAKER_Tutorial
The denovo gene predictors i included in the maker_exe.ctl file are
#-----Ab-initio Gene Prediction Algorithms
snap=/sw/maker/2.10/bin/../exe/snap/snap #location of snap executable
gmhmme3=/sw/GeneMark/20120203/bin/gmhmme3 #location of eukaryotic
genemark executable
gmhmmp= #location of prokaryotic genemark executable
augustus=/sw/maker/2.10/bin/../exe/augustus/bin/augustus #location of
augustus executable
However, I am not sure whether they were really used.
During the running, i could see repeatmasker, exonerate and wublast
were called. But i did see any information popped up for those gene
predictors.
So i am wondering if they were actually used.
Could you please let me know how to know if all or one of those gene
predictors were called by marker?
Kind Regards,
Huanle
More information about the maker-devel
mailing list