[maker-devel] segmentation fault

[Carson Holt]

Thanks Felix.

You may also have to run the fix below on wherever Bioperl is installed as
well, because it contains the same (DB_File GDBM_File NDBM_File SDBM_File)
statement in the Bio::DB::Fasta module in one of the BEGIN statements.

Thanks,
Carson



On 12-08-02 11:56 AM, "Felix Bemm" <felix.bemm at uni-wuerzburg.de> wrote:

>This snippet will fix your problem temporarily:
>
>cd maker/lib
>sed -i 's/qw(DB_File GDBM_File NDBM_File SDBM_File)/qw(DB_File)/'\
>  $(grep -l 'DB_File GDBM_File NDBM_File SDBM_File' *)
>
>But do it with caution, I still do not know what problems are caused by
>this fix.
>
>Best regards
>Felix
>
>On 02.08.2012 15:49, Carson Holt wrote:
>> Odd.  Have you tried updating the 3 modules I mentioned.
>>
>> Thanks,
>> Carson
>>
>>
>>
>> On 12-08-02 8:48 AM, "Michael Thon" <mike.thon at gmail.com> wrote:
>>
>>> I have the same problem as Fan Wen-Lang.  I get a segmentation fault
>>>when
>>> processing the fasta file.  The strange thing is, when I run maker with
>>> the -debug parameter, I don't get the segmentation fault.  I'm using
>>> maker 2.26 on ubuntu linux 64 bit.
>>> Mike
>>>
>>>
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>>
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