From kapeelc at gmail.com  Mon Dec  3 10:55:20 2012
From: kapeelc at gmail.com (Kapeel Chougule)
Date: Mon, 3 Dec 2012 09:55:20 -0700
Subject: [maker-devel] Maker error message
In-Reply-To: <CCDCDA68.16600%carsonhh@gmail.com>
References: <CA+DOtefhs9BMWn-S2LPv_MkUvikM446jvuxRqfqUax11hhNp3g@mail.gmail.com>
	<CCDCDA68.16600%carsonhh@gmail.com>
Message-ID: <CA+DOtefF6sYrMvnVuQO8P75E5ekfQ1uQaAkvhmuTZ43bBdan9g@mail.gmail.com>

Hi Carson,

The MAKER devel version worked like a charm on the failed chromosomes. But
the MAKER 2.2.6 ended up giving me the same ERROR when I re-run it.

Thank you,

Kapeel

On Thu, Nov 29, 2012 at 7:52 AM, Carson Holt <carsonhh at gmail.com> wrote:

> There should normally be more error message than that.  The module used to
> capture the error returns the string "Died" without an end line character
> when there is a problem capturing the STDERR of the failure (and I see that
> phrase here), so could you run this again and see if it produces a
> different message the second time.  Also I'm going to send you instructions
> on download the development version of MAKER in a separate message (off
> list).  It is easier for me to make changes and have you test them
> immediately that way.  Also there are already some bug fixes in the devel
> version so it's good to rule those out.
>
> Thanks,
> Carson
>
>
> From: Kapeel Chougule <kapeelc at gmail.com>
> Date: Wednesday, 28 November, 2012 3:15 PM
> To: "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
> Subject: Re: [maker-devel] Maker error message
>
> Attached is the maker_opts file. I am using my own customized repeat
> library and repeat_protein files. The length of the identifiers was
> shortened to < 50 characters as in my previous run it complained for
> identifiers having > 50 characters.
>
> Thank you,
>
> Kapeel
> On Wed, Nov 28, 2012 at 12:25 PM, Daniel Ence <dence at genetics.utah.edu>wrote:
>
>> Hi Kapeel,
>>
>> Please keep this discussion on the maker-devel group, so we can get
>> everyone's input to help resolve this issue with maker.
>>
>> Can you sen me the maker_opts file that you were using? The options that
>> might be relevant include the libraries you were giving repeatrunner and
>> repeatmasker.
>>
>> Thanks,
>> Daniel
>>
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: kapeelc at gmail.com [kapeelc at gmail.com]
>> Sent: Wednesday, November 28, 2012 11:39 AM
>> To: Daniel Ence
>> Subject: Re: Maker error message
>>
>> Hi Daniel,
>>
>> Here is the output around the error:
>>
>> j_size:94   current j:76
>>  j_size:94   current j:77
>>  j_size:94   current j:78
>>  j_size:94   current j:79
>>  j_size:94   current j:80
>>  j_size:94   current j:81
>>  j_size:94   current j:82
>>  j_size:94   current j:83
>>  j_size:94   current j:84
>>  j_size:94   current j:85
>>  j_size:94   current j:86
>>  j_size:94   current j:87
>>  j_size:94   current j:88
>>  j_size:94   current j:89
>>  j_size:94   current j:90
>>  j_size:94   current j:91
>>  j_size:94   current j:92
>>  j_size:94   current j:93
>> ...finished clustering.
>> re reading repeat masker report.
>>
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/Chr5.64.PReDa_121015_short%2Efasta.specific.out
>> re reading blast report.
>>
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/Chr5.64.TE_protein_db_121015_short_header%2Efasta.repeatrunner
>> deleted:1 hits
>> in cluster::shadow_cluster...
>> DiedERROR: Failed while processing all repeats
>> ERROR: Chunk failed at level:3, tier_type:1
>> FAILED CONTIG:Chr5
>>
>> ERROR: Chunk failed at level:2, tier_type:0
>> FAILED CONTIG:Chr5
>>
>>
>>
>>
>> --Next Contig--
>>
>> Processing run.log file...
>>
>> Maker is now finished!!!
>>
>>
>> For RepeatMasker I am using wublast as the search engine.
>>
>> The run log had this:
>>
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.62
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.62
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> DIED    RANK    0
>> DIED    COUNT   2
>>
>> Is there way to skip the the failed chunk and move forward??
>>
>> Thanks
>>
>> Kapeel
>>
>> <quote author='Daniel Ence'>
>> Hi Kapeel,
>>
>> I think we need some more information about the settings that you're
>> running
>> maker with. Can you give more of the output around the error? Also, since
>> maker is dying during the repeatmasking stage, can you tell us more about
>> the settings you have for RepeatMasker?
>>
>>
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________
>> From: maker-devel-bounces at yandell-lab.org
>> [maker-devel-bounces at yandell-lab.org] on behalf of Kapeel Chougule
>> [kapeelc at gmail.com]
>> Sent: Tuesday, November 27, 2012 6:23 PM
>> To: maker-devel at yandell-lab.org
>> Subject: [maker-devel] Maker error message
>>
>> Hi,
>>
>> I recently ran into this error for chr5. I am using maker 2.26 .
>>
>> DiedERROR: Failed while processing all repeats
>> ERROR: Chunk failed at level:3, tier_type:1
>> FAILED CONTIG:Chr5
>>
>> ERROR: Chunk failed at level:2, tier_type:0
>> FAILED CONTIG:Chr5
>>
>> Could someone help me understand this error and why its happening?
>>
>> Thanks,
>>
>> --
>>
>> Kapeel Chougule
>> Systems Programmer
>> Arizona Genomics Institute (AGI)
>> Thomas W. Keating Bioresearch Building
>> University of Arizona
>> 1657 E. Helen Street
>> Tucson, AZ 85719
>> www.genome.arizona.edu<http://www.genome.arizona.edu>
>>
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>> </quote>
>> Quoted from:
>>
>> http://gmod.827538.n3.nabble.com/Maker-error-message-tp4027051p4027052.html
>>
>
>
>
> --
> *
>
> Kapeel Chougule
> Systems Programmer
> Arizona Genomics Institute (AGI)
> Thomas W. Keating Bioresearch Building
> University of Arizona
> 1657 E. Helen Street
> Tucson, AZ 85719
> www.genome.arizona.edu
> *
> _______________________________________________ maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>



-- 
*

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719
www.genome.arizona.edu
*
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From carsonhh at gmail.com  Mon Dec  3 13:28:40 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Mon, 03 Dec 2012 14:28:40 -0500
Subject: [maker-devel] Maker error message
In-Reply-To: <CA+DOtefF6sYrMvnVuQO8P75E5ekfQ1uQaAkvhmuTZ43bBdan9g@mail.gmail.com>
Message-ID: <CCE26754.16702%carsonhh@gmail.com>

Good to know.  It must be covered by an existing bug fix.  I'm going to wrap
up the devel version as 2.27 in the next couple days and put it online.

Thanks,
Carson



From:  Kapeel Chougule <kapeelc at gmail.com>
Date:  Monday, 3 December, 2012 11:55 AM
To:  Carson Holt <carsonhh at gmail.com>
Cc:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] Maker error message

Hi Carson,

The MAKER devel version worked like a charm on the failed chromosomes. But
the MAKER 2.2.6 ended up giving me the same ERROR when I re-run it.

Thank you,

Kapeel

On Thu, Nov 29, 2012 at 7:52 AM, Carson Holt <carsonhh at gmail.com> wrote:
> There should normally be more error message than that.  The module used to
> capture the error returns the string "Died" without an end line character when
> there is a problem capturing the STDERR of the failure (and I see that phrase
> here), so could you run this again and see if it produces a different message
> the second time.  Also I'm going to send you instructions on download the
> development version of MAKER in a separate message (off list).  It is easier
> for me to make changes and have you test them immediately that way.  Also
> there are already some bug fixes in the devel version so it's good to rule
> those out.
> 
> Thanks,
> Carson
> 
> 
> From:  Kapeel Chougule <kapeelc at gmail.com>
> Date:  Wednesday, 28 November, 2012 3:15 PM
> To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
> Subject:  Re: [maker-devel] Maker error message
> 
> Attached is the maker_opts file. I am using my own customized repeat library
> and repeat_protein files. The length of the identifiers was shortened to < 50
> characters as in my previous run it complained for identifiers having > 50
> characters.  
> 
> Thank you,
> 
> Kapeel
> On Wed, Nov 28, 2012 at 12:25 PM, Daniel Ence <dence at genetics.utah.edu> wrote:
>> Hi Kapeel, 
>> 
>> Please keep this discussion on the maker-devel group, so we can get
>> everyone's input to help resolve this issue with maker.
>> 
>> Can you sen me the maker_opts file that you were using? The options that
>> might be relevant include the libraries you were giving repeatrunner and
>> repeatmasker.
>> 
>> Thanks,
>> Daniel 
>> 
>> 
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: kapeelc at gmail.com [kapeelc at gmail.com]
>> Sent: Wednesday, November 28, 2012 11:39 AM
>> To: Daniel Ence
>> Subject: Re: Maker error message
>> 
>> Hi Daniel,
>> 
>> Here is the output around the error:
>> 
>> j_size:94   current j:76
>>  j_size:94   current j:77
>>  j_size:94   current j:78
>>  j_size:94   current j:79
>>  j_size:94   current j:80
>>  j_size:94   current j:81
>>  j_size:94   current j:82
>>  j_size:94   current j:83
>>  j_size:94   current j:84
>>  j_size:94   current j:85
>>  j_size:94   current j:86
>>  j_size:94   current j:87
>>  j_size:94   current j:88
>>  j_size:94   current j:89
>>  j_size:94   current j:90
>>  j_size:94   current j:91
>>  j_size:94   current j:92
>>  j_size:94   current j:93
>> ...finished clustering.
>> re reading repeat masker report.
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/Chr5.64.PReDa_121015_short%2Efasta.specif
>> ic.out
>> re reading blast report.
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/Chr5.64.TE_protein_db_121015_short_header
>> %2Efasta.repeatrunner
>> deleted:1 hits
>> in cluster::shadow_cluster...
>> DiedERROR: Failed while processing all repeats
>> ERROR: Chunk failed at level:3, tier_type:1
>> FAILED CONTIG:Chr5
>> 
>> ERROR: Chunk failed at level:2, tier_type:0
>> FAILED CONTIG:Chr5
>> 
>> 
>> 
>> 
>> --Next Contig--
>> 
>> Processing run.log file...
>> 
>> Maker is now finished!!!
>> 
>> 
>> For RepeatMasker I am using wublast as the search engine.
>> 
>> The run log had this:
>> 
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.62
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.62
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> DIED    RANK    0
>> DIED    COUNT   2
>> 
>> Is there way to skip the the failed chunk and move forward??
>> 
>> Thanks
>> 
>> Kapeel
>> 
>> <quote author='Daniel Ence'>
>> Hi Kapeel,
>> 
>> I think we need some more information about the settings that you're running
>> maker with. Can you give more of the output around the error? Also, since
>> maker is dying during the repeatmasking stage, can you tell us more about
>> the settings you have for RepeatMasker?
>> 
>> 
>> 
>> Thanks,
>> Daniel
>> 
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________
>> From: maker-devel-bounces at yandell-lab.org
>> [maker-devel-bounces at yandell-lab.org] on behalf of Kapeel Chougule
>> [kapeelc at gmail.com]
>> Sent: Tuesday, November 27, 2012 6:23 PM
>> To: maker-devel at yandell-lab.org
>> Subject: [maker-devel] Maker error message
>> 
>> Hi,
>> 
>> I recently ran into this error for chr5. I am using maker 2.26 .
>> 
>> DiedERROR: Failed while processing all repeats
>> ERROR: Chunk failed at level:3, tier_type:1
>> FAILED CONTIG:Chr5
>> 
>> ERROR: Chunk failed at level:2, tier_type:0
>> FAILED CONTIG:Chr5
>> 
>> Could someone help me understand this error and why its happening?
>> 
>> Thanks,
>> 
>> --
>> 
>> Kapeel Chougule
>> Systems Programmer
>> Arizona Genomics Institute (AGI)
>> Thomas W. Keating Bioresearch Building
>> University of Arizona
>> 1657 E. Helen Street
>> Tucson, AZ 85719
>> www.genome.arizona.edu <http://www.genome.arizona.edu>
>> <http://www.genome.arizona.edu>
>> 
>> 
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> 
>> </quote>
>> Quoted from:
>> http://gmod.827538.n3.nabble.com/Maker-error-message-tp4027051p4027052.html
> 
> 
> 
> -- 
> 
> Kapeel Chougule
> Systems Programmer
> Arizona Genomics Institute (AGI)
> Thomas W. Keating Bioresearch Building
> University of Arizona
> 1657 E. Helen Street
> Tucson, AZ 85719 
> www.genome.arizona.edu <http://www.genome.arizona.edu>
> 
> _______________________________________________ maker-devel mailing list
> maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/mak
> er-devel_yandell-lab.org



-- 

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719   
www.genome.arizona.edu <http://www.genome.arizona.edu>



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From parulk at caltech.edu  Tue Dec  4 18:27:18 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Tue, 4 Dec 2012 16:27:18 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCDD765C.16680%carsonhh@gmail.com>
References: <CCDD765C.16680%carsonhh@gmail.com>
Message-ID: <4049.131.215.15.234.1354667238.squirrel@webmail.caltech.edu>

Dear Carson,

Thanks once again, we have limited experimental data with very short ESTs.
CEGMA is useful for us to gauge our gene-model.
On a different note to re-annotate genome(post evidence based
prediction(used as training dataset)and abinitio gene-prediction). Here
are the control parameters I am using with AED score set to 0.5, however I
get predictions that includes the ones with AED score of 1.00 in resulting
gff3 file. Though I do see the number of genes reduced to 1/3 of initial
gff3 file.

#-----Genome (Required for De-Novo Annotation)
genome=Scaffold1.fa #genome sequence file in fasta format
organism_type=eukaryotic #eukaryotic or prokaryotic. Default is eukaryotic

#-----Re-annotation Using MAKER Derived GFF3
genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 = no
protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 = no

#-----MAKER Behavior Options
AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by 0
and 1)

Thanks and regards,
Parul Kudtarkar

> Wow 330,000 is a lot. a large portion of genes are likely to be partial at
> best.  You should seriously consider using mRNAseq to capture those by
> using maker's est_gff option to pass in results from cufflinks or trinity.
>  Also I wouldn't even try to annotate contigs less than 10kb in size, just
> have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>
> Thanks,
> Carson
>
>
>
>
> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>
>>Thanks for the guidance Carson, total contig size is 330,611 with N50 of
>>39.17kb. I agree we have short ESTs. So this is the possible reason when
>>filtering based on AED score 0.75 there are no gene models predicted
>>despite the model_gff file has few genes with scores less than 0.75?
>>
>>Thanks and regards,
>>Parul Kudtarkar
>>
>>> There are certain characteristics that are apparent in this contig.
>>First
>>> it seems to be repeat rich with a very low gene density.  You also have
>>very short ESTs, and because of the lengths you are probably getting
>>many
>>> of them to align spuriously which produces very short gene models that
>>are
>>> more than likely false positives or at the very least just a piece of a
>>gene.  I would turn off est2genome as a predictor for this reason unless
>>you can get longer EST assemblies (i.e. From mRNAseq).    Your protein
>>alignments also seem to be few and far between.  You probably need to
>>add
>>> more proteins from a couple of related species, and you might consider
>>using protein2genome rather than est2genome as a predictor if you are
>>still working to generate a training set. Also est2genome produced
>>models
>>> almost always have an AED score near 0 so mixing est2genome with the
>>AED_threshold with such limited protein support does create an
>>artificial
>>> bias to get back very short and incomplete models.
>>>
>>> How many contigs do you have in total and what is the N50 value for the
>>assembly? If you have a large number of very short contigs, you will get
>>very inflated gene counts because you get genes split across contigs and
>>many contigs tend t be subtle rearrangements of other contigs just
>>assembled in a slightly different way (so you can get bits and pieces of
>>the same genes just rearranged).  This scenario is another confounding
>>factor if using the est2genome predictor with short ESTs.  I would
>>recommend running CEGMA to get an estimate for the genome completeness
>>as
>>> well as get an estimate of fragmentation as one of the statistics
>>produced
>>> is a percent of genes that are found complete (end to end) vs those
>>> that
>>are partial.  CEGMA identifies house keeping genes that tend to be
>>shorter
>>> and less intron rich than other genes in the genome, so if CEGMA gives
>>> a
>>high partial percentage and a low complete percentage, then this pattern
>>can be expected to be even more exaggerated for other genes in the
>>genome.
>>>
>>> If your genome is highly fragmented or proteins do not align well then
>>there are other strategies.  For example, some vertebrate genomes end up
>>having extremely fragmented assemblies (on the order of 100,000
>>contigs),
>>> and if they are distantly related to other annotated species few
>>proteins
>>> may align to the contigs because the introns in the alignments tend to
>>be
>>> so long and exons so short that it pushes down the significance scores
>>too
>>> much.  In those cases heavy mRNAseq seems to be the best if not only
>>> way
>>to get enough evidence to stitch gene models together.
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>
>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>
>>>>Dear Carson and Daniel,
>>>>Thanks. I ran sample file for filtering genes based on AED score. The
>>input gff3 file was provided to option model_pred(see attached file
>>Scaffold1.gff), the cutoff AED score was set to 0.75. There are at least
>>>> 5
>>>>genes with AED score less than 0.75. However there were no genes
>>>> predicted
>>>>in the output file(see attached file Scaffold1_out). I have also
>>attached
>>>>the maker_opts.ctl. Could you please advice on this.
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>> Use the AED_threshold option in the maker_opts.ctl file if you just
>>>>>want
>>>>> to restrict final gene models to close matches directly within maker.
>>>>>On
>>>>> the other hand, if you are trying to build a dataset for training
>>>>> gene
>>predictors, use the maker2zff script for generating a filtered dataset
>>>>>for
>>>>> SNAP training.  There are a number of filters available. Just call
>>>>> the
>>script once without parameters to see the options.
>>>>> Thanks,
>>>>> Carson
>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>Hi Parul,
>>>>>>I think the way you described (with the maker_opts.ctl file) is how
>>you
>>>>>>want to proceed. You still need to give the genome too.
>>>>>>Daniel
>>>>>>Daniel Ence
>>>>>>Graduate Student
>>>>>>Eccles Institute of Human Genetics
>>>>>>University of Utah
>>>>>>15 North 2030 East, Room 2100
>>>>>>Salt Lake City, UT 84112-5330
>>>>>>________________________________________
>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
>>[parulk at caltech.edu]
>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>To: Parul Kudtarkar
>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>Also, are there any other parameters that are required when filtering
>>based on AED score?
>>>>>>> Hello Carson,
>>>>>>> Just to confirm, Is there a script that would filter gene models at
>>specific AED score.
>>>>>>> Alternatively if I were to do this within maker with regards to
>>>>>>>parameters
>>>>>>> in maker_opts.ctl file I would have to provide my predicted genes
>>>>>>>gff3
>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and 1 is
>>worst
>>>>>>>> as
>>>>>>>> it is a distance metric.  You can use the AED_threshold parameter
>>to
>>>>>>>> require better matching to the evidence by setting it closer to 0.
>>>>>>>>You
>>>>>>>> can
>>>>>>>> also try to increase protein homology evidence as some of your
>>calls
>>>>>>>>may
>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>> --Carson
>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>>Dear Maker community,
>>>>>>>>>For gene-prediction I get training data-set from evidence based
>>prediction, I use this data-set to train SNAP as well as Augustus
>>predictions, followed by boot-strapping. I would typically expect
>>20-30K
>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>> indicating
>>>>>>>>> too
>>>>>>>>>many false positives. Is there a way to further refine these
>>predication/script to retain predictions with AED score 1 and if
>>yes
>>>>>>>>>how
>>>>>>>>>to go about this?
>>>>>>>>>Thanks and regards,
>>>>>>>>>Parul Kudtarkar
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>>>_______________________________________________
>>>>>>>>>maker-devel mailing list
>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>>>>>>>>>.o
>>rg
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>>>_______________________________________________
>>>>>>maker-devel mailing list
>>>>>>maker-devel at box290.bluehost.com
>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.or
>>>>>>g
>>_______________________________________________
>>>>>>maker-devel mailing list
>>>>>>maker-devel at box290.bluehost.com
>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.or
>>>>>>g
>>>>> _______________________________________________
>>>>> maker-devel mailing list
>>>>> maker-devel at box290.bluehost.com
>>>>>
>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>>
>>>
>>>
>>
>>
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org
>>
>>
>>
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From parulk at caltech.edu  Tue Dec  4 18:39:51 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Tue, 4 Dec 2012 16:39:51 -0800 (PST)
Subject: [maker-devel] Maker Behavior Options
Message-ID: <4249.131.215.15.234.1354667991.squirrel@webmail.caltech.edu>

Hello,

I would presume min_contig=1 here is equal to contig size of 1KB?
min_contig=1

Thanks and regards,
Parul Kudtarkar

--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From dence at genetics.utah.edu  Wed Dec  5 09:39:36 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Wed, 5 Dec 2012 15:39:36 +0000
Subject: [maker-devel] Maker Behavior Options
In-Reply-To: <4249.131.215.15.234.1354667991.squirrel@webmail.caltech.edu>
References: <4249.131.215.15.234.1354667991.squirrel@webmail.caltech.edu>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB589F@mxb2.hg.genetics.utah.edu>

Hi Parul, 

The "1" there actually means 1 bp. The default setting in maker is to allow contigs of any length. 


Thanks
Daniel 

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________________
From: maker-devel-bounces at yandell-lab.org [maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar [parulk at caltech.edu]
Sent: Tuesday, December 04, 2012 5:39 PM
To: maker-devel at yandell-lab.org
Subject: [maker-devel] Maker Behavior Options

Hello,

I would presume min_contig=1 here is equal to contig size of 1KB?
min_contig=1

Thanks and regards,
Parul Kudtarkar

--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org


_______________________________________________
maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org



From carsonhh at gmail.com  Wed Dec  5 09:44:52 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Wed, 05 Dec 2012 10:44:52 -0500
Subject: [maker-devel] AED score
In-Reply-To: <4049.131.215.15.234.1354667238.squirrel@webmail.caltech.edu>
Message-ID: <CCE4D52D.169DA%carsonhh@gmail.com>

You should always get all predictions, but should only get models
(match/match_part) with AED scores less than 0.5.  You should never get
models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
keep_preds set.

Do you have keeps_preds set or gene models with AED values above your
threshold (not match/match_part features)?  If the first one is the case,
just set it to 0.  If the second one in the case, could you send me
example GFF3?

Thanks,
Carson



On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Carson,
>
>Thanks once again, we have limited experimental data with very short ESTs.
>CEGMA is useful for us to gauge our gene-model.
>On a different note to re-annotate genome(post evidence based
>prediction(used as training dataset)and abinitio gene-prediction). Here
>are the control parameters I am using with AED score set to 0.5, however I
>get predictions that includes the ones with AED score of 1.00 in resulting
>gff3 file. Though I do see the number of genes reduced to 1/3 of initial
>gff3 file.
>
>#-----Genome (Required for De-Novo Annotation)
>genome=Scaffold1.fa #genome sequence file in fasta format
>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is eukaryotic
>
>#-----Re-annotation Using MAKER Derived GFF3
>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
>est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 = no
>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
>other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 = no
>
>#-----MAKER Behavior Options
>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by 0
>and 1)
>
>Thanks and regards,
>Parul Kudtarkar
>
>> Wow 330,000 is a lot. a large portion of genes are likely to be partial
>>at
>> best.  You should seriously consider using mRNAseq to capture those by
>> using maker's est_gff option to pass in results from cufflinks or
>>trinity.
>>  Also I wouldn't even try to annotate contigs less than 10kb in size,
>>just
>> have maker skip them by setting the min_contig filter in the
>> maker_opts.ctl file.
>>
>> Thanks,
>> Carson
>>
>>
>>
>>
>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>
>>>Thanks for the guidance Carson, total contig size is 330,611 with N50 of
>>>39.17kb. I agree we have short ESTs. So this is the possible reason when
>>>filtering based on AED score 0.75 there are no gene models predicted
>>>despite the model_gff file has few genes with scores less than 0.75?
>>>
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>
>>>> There are certain characteristics that are apparent in this contig.
>>>First
>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>have
>>>very short ESTs, and because of the lengths you are probably getting
>>>many
>>>> of them to align spuriously which produces very short gene models that
>>>are
>>>> more than likely false positives or at the very least just a piece of
>>>>a
>>>gene.  I would turn off est2genome as a predictor for this reason unless
>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your protein
>>>alignments also seem to be few and far between.  You probably need to
>>>add
>>>> more proteins from a couple of related species, and you might consider
>>>using protein2genome rather than est2genome as a predictor if you are
>>>still working to generate a training set. Also est2genome produced
>>>models
>>>> almost always have an AED score near 0 so mixing est2genome with the
>>>AED_threshold with such limited protein support does create an
>>>artificial
>>>> bias to get back very short and incomplete models.
>>>>
>>>> How many contigs do you have in total and what is the N50 value for
>>>>the
>>>assembly? If you have a large number of very short contigs, you will get
>>>very inflated gene counts because you get genes split across contigs and
>>>many contigs tend t be subtle rearrangements of other contigs just
>>>assembled in a slightly different way (so you can get bits and pieces of
>>>the same genes just rearranged).  This scenario is another confounding
>>>factor if using the est2genome predictor with short ESTs.  I would
>>>recommend running CEGMA to get an estimate for the genome completeness
>>>as
>>>> well as get an estimate of fragmentation as one of the statistics
>>>produced
>>>> is a percent of genes that are found complete (end to end) vs those
>>>> that
>>>are partial.  CEGMA identifies house keeping genes that tend to be
>>>shorter
>>>> and less intron rich than other genes in the genome, so if CEGMA gives
>>>> a
>>>high partial percentage and a low complete percentage, then this pattern
>>>can be expected to be even more exaggerated for other genes in the
>>>genome.
>>>>
>>>> If your genome is highly fragmented or proteins do not align well then
>>>there are other strategies.  For example, some vertebrate genomes end up
>>>having extremely fragmented assemblies (on the order of 100,000
>>>contigs),
>>>> and if they are distantly related to other annotated species few
>>>proteins
>>>> may align to the contigs because the introns in the alignments tend to
>>>be
>>>> so long and exons so short that it pushes down the significance scores
>>>too
>>>> much.  In those cases heavy mRNAseq seems to be the best if not only
>>>> way
>>>to get enough evidence to stitch gene models together.
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>
>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>
>>>>>Dear Carson and Daniel,
>>>>>Thanks. I ran sample file for filtering genes based on AED score. The
>>>input gff3 file was provided to option model_pred(see attached file
>>>Scaffold1.gff), the cutoff AED score was set to 0.75. There are at least
>>>>> 5
>>>>>genes with AED score less than 0.75. However there were no genes
>>>>> predicted
>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>attached
>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you just
>>>>>>want
>>>>>> to restrict final gene models to close matches directly within
>>>>>>maker.
>>>>>>On
>>>>>> the other hand, if you are trying to build a dataset for training
>>>>>> gene
>>>predictors, use the maker2zff script for generating a filtered dataset
>>>>>>for
>>>>>> SNAP training.  There are a number of filters available. Just call
>>>>>> the
>>>script once without parameters to see the options.
>>>>>> Thanks,
>>>>>> Carson
>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>>Hi Parul,
>>>>>>>I think the way you described (with the maker_opts.ctl file) is how
>>>you
>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>Daniel
>>>>>>>Daniel Ence
>>>>>>>Graduate Student
>>>>>>>Eccles Institute of Human Genetics
>>>>>>>University of Utah
>>>>>>>15 North 2030 East, Room 2100
>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>________________________________________
>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
>>>[parulk at caltech.edu]
>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>To: Parul Kudtarkar
>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>Also, are there any other parameters that are required when
>>>>>>>filtering
>>>based on AED score?
>>>>>>>> Hello Carson,
>>>>>>>> Just to confirm, Is there a script that would filter gene models
>>>>>>>>at
>>>specific AED score.
>>>>>>>> Alternatively if I were to do this within maker with regards to
>>>>>>>>parameters
>>>>>>>> in maker_opts.ctl file I would have to provide my predicted genes
>>>>>>>>gff3
>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and 1 is
>>>worst
>>>>>>>>> as
>>>>>>>>> it is a distance metric.  You can use the AED_threshold parameter
>>>to
>>>>>>>>> require better matching to the evidence by setting it closer to
>>>>>>>>>0.
>>>>>>>>>You
>>>>>>>>> can
>>>>>>>>> also try to increase protein homology evidence as some of your
>>>calls
>>>>>>>>>may
>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>> --Carson
>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>wrote:
>>>>>>>>>>Dear Maker community,
>>>>>>>>>>For gene-prediction I get training data-set from evidence based
>>>prediction, I use this data-set to train SNAP as well as Augustus
>>>predictions, followed by boot-strapping. I would typically expect
>>>20-30K
>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>> indicating
>>>>>>>>>> too
>>>>>>>>>>many false positives. Is there a way to further refine these
>>>predication/script to retain predictions with AED score 1 and if
>>>yes
>>>>>>>>>>how
>>>>>>>>>>to go about this?
>>>>>>>>>>Thanks and regards,
>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>--
>>>>>>>>>>Scientific Programmer
>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>Beckman Institute,
>>>>>>>>>>California Institute of Technology
>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>ab
>>>>>>>>>>.o
>>>rg
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>>>_______________________________________________
>>>>>>>maker-devel mailing list
>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.
>>>>>>>or
>>>>>>>g
>>>_______________________________________________
>>>>>>>maker-devel mailing list
>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.
>>>>>>>or
>>>>>>>g
>>>>>> _______________________________________________
>>>>>> maker-devel mailing list
>>>>>> maker-devel at box290.bluehost.com
>>>>>>
>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.o
>>>>>>rg
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>>
>>>>
>>>>
>>>
>>>
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>>>
>>>
>>>
>>>
>>
>>
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>





From parulk at caltech.edu  Wed Dec  5 14:04:35 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Wed, 5 Dec 2012 12:04:35 -0800 (PST)
Subject: [maker-devel] Maker Behavior Options
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB589F@mxb2.hg.genetics.utah.edu>
References: <4249.131.215.15.234.1354667991.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB589F@mxb2.hg.genetics.utah.edu>
Message-ID: <1863.131.215.15.234.1354737875.squirrel@webmail.caltech.edu>

Dear Daniel,

Thanks for a quick response.

Thanks and regards,
Parul Kudtarkar

> Hi Parul,
>
> The "1" there actually means 1 bp. The default setting in maker is to
> allow contigs of any length.
>
>
> Thanks
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: maker-devel-bounces at yandell-lab.org
> [maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
> [parulk at caltech.edu]
> Sent: Tuesday, December 04, 2012 5:39 PM
> To: maker-devel at yandell-lab.org
> Subject: [maker-devel] Maker Behavior Options
>
> Hello,
>
> I would presume min_contig=1 here is equal to contig size of 1KB?
> min_contig=1
>
> Thanks and regards,
> Parul Kudtarkar
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From carsonhh at gmail.com  Wed Dec  5 14:31:26 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Wed, 05 Dec 2012 15:31:26 -0500
Subject: [maker-devel] AED score
In-Reply-To: <1853.131.215.15.234.1354737826.squirrel@webmail.caltech.edu>
Message-ID: <CCE516E9.16A20%carsonhh@gmail.com>

Your output has no genes.  They've all been filtered out.  The gene
predictions are left for reference purposes, but there are no gene models
in the file.  You need to look at the type columns in the GFF3 file -->
match/match_part features are evidence and reference data but not models.
All models will have types gene/mRNA/exon/CDS.  For example if you just
want gene models in your file you can use the gff3_merge script with the
-g option, and it will only print out the gene models.

I think you may be misinterpreting what is happening at different steps,
as well as how to read the result files.  Could you give me a detailed
explanation of what you expect to get back together with your control
files and I can walk you through the configuration, and indicate what to
expect.  Also what was the report like from CEGMA. Could you include the
report file that shows how complete your genome is and how fragmented it
is?  

Thanks,
Carson



On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Carson,
>
>Thanks for a quick response. keep_preds is set to 0
>Though for previous step(ab-intio gene predictions keep_preds was set to
>1, see Scaffold1_input.gff). I have also attached the output file
>Scaffold1_out.gff.
>Please advice.
>
>Thanks and regards,
>Parul Kudtarkar
>
>> You should always get all predictions, but should only get models
>> (match/match_part) with AED scores less than 0.5.  You should never get
>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>> keep_preds set.
>>
>> Do you have keeps_preds set or gene models with AED values above your
>> threshold (not match/match_part features)?  If the first one is the
>>case,
>> just set it to 0.  If the second one in the case, could you send me
>> example GFF3?
>>
>> Thanks,
>> Carson
>>
>>
>>
>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>
>>>Dear Carson,
>>>
>>>Thanks once again, we have limited experimental data with very short
>>> ESTs.
>>>CEGMA is useful for us to gauge our gene-model.
>>>On a different note to re-annotate genome(post evidence based
>>>prediction(used as training dataset)and abinitio gene-prediction). Here
>>>are the control parameters I am using with AED score set to 0.5, however
>>> I
>>>get predictions that includes the ones with AED score of 1.00 in
>>> resulting
>>>gff3 file. Though I do see the number of genes reduced to 1/3 of initial
>>>gff3 file.
>>>
>>>#-----Genome (Required for De-Novo Annotation)
>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>> eukaryotic
>>>
>>>#-----Re-annotation Using MAKER Derived GFF3
>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
>>>est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
>>>no
>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
>>>other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 = no
>>>
>>>#-----MAKER Behavior Options
>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by 0
>>>and 1)
>>>
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>
>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>partial
>>>>at
>>>> best.  You should seriously consider using mRNAseq to capture those by
>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>trinity.
>>>>  Also I wouldn't even try to annotate contigs less than 10kb in size,
>>>>just
>>>> have maker skip them by setting the min_contig filter in the
>>>> maker_opts.ctl file.
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>
>>>>
>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>
>>>>>Thanks for the guidance Carson, total contig size is 330,611 with N50
>>>>> of
>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>> when
>>>>>filtering based on AED score 0.75 there are no gene models predicted
>>>>>despite the model_gff file has few genes with scores less than 0.75?
>>>>>
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>
>>>>>> There are certain characteristics that are apparent in this contig.
>>>>>First
>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>have
>>>>>very short ESTs, and because of the lengths you are probably getting
>>>>>many
>>>>>> of them to align spuriously which produces very short gene models
>>>>>> that
>>>>>are
>>>>>> more than likely false positives or at the very least just a piece
>>>>>>of
>>>>>>a
>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>> unless
>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your protein
>>>>>alignments also seem to be few and far between.  You probably need to
>>>>>add
>>>>>> more proteins from a couple of related species, and you might
>>>>>> consider
>>>>>using protein2genome rather than est2genome as a predictor if you are
>>>>>still working to generate a training set. Also est2genome produced
>>>>>models
>>>>>> almost always have an AED score near 0 so mixing est2genome with the
>>>>>AED_threshold with such limited protein support does create an
>>>>>artificial
>>>>>> bias to get back very short and incomplete models.
>>>>>>
>>>>>> How many contigs do you have in total and what is the N50 value for
>>>>>>the
>>>>>assembly? If you have a large number of very short contigs, you will
>>>>> get
>>>>>very inflated gene counts because you get genes split across contigs
>>>>> and
>>>>>many contigs tend t be subtle rearrangements of other contigs just
>>>>>assembled in a slightly different way (so you can get bits and pieces
>>>>> of
>>>>>the same genes just rearranged).  This scenario is another confounding
>>>>>factor if using the est2genome predictor with short ESTs.  I would
>>>>>recommend running CEGMA to get an estimate for the genome completeness
>>>>>as
>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>produced
>>>>>> is a percent of genes that are found complete (end to end) vs those
>>>>>> that
>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
>>>>>shorter
>>>>>> and less intron rich than other genes in the genome, so if CEGMA
>>>>>> gives
>>>>>> a
>>>>>high partial percentage and a low complete percentage, then this
>>>>> pattern
>>>>>can be expected to be even more exaggerated for other genes in the
>>>>>genome.
>>>>>>
>>>>>> If your genome is highly fragmented or proteins do not align well
>>>>>> then
>>>>>there are other strategies.  For example, some vertebrate genomes end
>>>>> up
>>>>>having extremely fragmented assemblies (on the order of 100,000
>>>>>contigs),
>>>>>> and if they are distantly related to other annotated species few
>>>>>proteins
>>>>>> may align to the contigs because the introns in the alignments tend
>>>>>> to
>>>>>be
>>>>>> so long and exons so short that it pushes down the significance
>>>>>> scores
>>>>>too
>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not only
>>>>>> way
>>>>>to get enough evidence to stitch gene models together.
>>>>>>
>>>>>> Thanks,
>>>>>> Carson
>>>>>>
>>>>>>
>>>>>>
>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>
>>>>>>>Dear Carson and Daniel,
>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
>>>>>>>The
>>>>>input gff3 file was provided to option model_pred(see attached file
>>>>>Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>> least
>>>>>>> 5
>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>> predicted
>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>attached
>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>Thanks and regards,
>>>>>>>Parul Kudtarkar
>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>just
>>>>>>>>want
>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>maker.
>>>>>>>>On
>>>>>>>> the other hand, if you are trying to build a dataset for training
>>>>>>>> gene
>>>>>predictors, use the maker2zff script for generating a filtered dataset
>>>>>>>>for
>>>>>>>> SNAP training.  There are a number of filters available. Just call
>>>>>>>> the
>>>>>script once without parameters to see the options.
>>>>>>>> Thanks,
>>>>>>>> Carson
>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>wrote:
>>>>>>>>>Hi Parul,
>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
>>>>>>>>>how
>>>>>you
>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>Daniel
>>>>>>>>>Daniel Ence
>>>>>>>>>Graduate Student
>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>University of Utah
>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>________________________________________
>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
>>>>>[parulk at caltech.edu]
>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>Also, are there any other parameters that are required when
>>>>>>>>>filtering
>>>>>based on AED score?
>>>>>>>>>> Hello Carson,
>>>>>>>>>> Just to confirm, Is there a script that would filter gene models
>>>>>>>>>>at
>>>>>specific AED score.
>>>>>>>>>> Alternatively if I were to do this within maker with regards to
>>>>>>>>>>parameters
>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>genes
>>>>>>>>>>gff3
>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and 1
>>>>>>>>>>> is
>>>>>worst
>>>>>>>>>>> as
>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
>>>>>>>>>>> parameter
>>>>>to
>>>>>>>>>>> require better matching to the evidence by setting it closer to
>>>>>>>>>>>0.
>>>>>>>>>>>You
>>>>>>>>>>> can
>>>>>>>>>>> also try to increase protein homology evidence as some of your
>>>>>calls
>>>>>>>>>>>may
>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>> --Carson
>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>wrote:
>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>For gene-prediction I get training data-set from evidence based
>>>>>prediction, I use this data-set to train SNAP as well as Augustus
>>>>>predictions, followed by boot-strapping. I would typically expect
>>>>>20-30K
>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>> indicating
>>>>>>>>>>>> too
>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>predication/script to retain predictions with AED score 1 and if
>>>>>yes
>>>>>>>>>>>>how
>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>--
>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-l
>>>>>>>>>>>>ab
>>>>>>>>>>>>.o
>>>>>rg
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>>>_______________________________________________
>>>>>>>>>maker-devel mailing list
>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>>>>>>>>>b.
>>>>>>>>>or
>>>>>>>>>g
>>>>>_______________________________________________
>>>>>>>>>maker-devel mailing list
>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>>>>>>>>>b.
>>>>>>>>>or
>>>>>>>>>g
>>>>>>>> _______________________________________________
>>>>>>>> maker-devel mailing list
>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>
>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>>>>>>>>.o
>>>>>>>>rg
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>>>
>>
>>
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org





From parulk at caltech.edu  Wed Dec  5 14:03:46 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Wed, 5 Dec 2012 12:03:46 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCE4D52D.169DA%carsonhh@gmail.com>
References: <CCE4D52D.169DA%carsonhh@gmail.com>
Message-ID: <1853.131.215.15.234.1354737826.squirrel@webmail.caltech.edu>

Dear Carson,

Thanks for a quick response. keep_preds is set to 0
Though for previous step(ab-intio gene predictions keep_preds was set to
1, see Scaffold1_input.gff). I have also attached the output file
Scaffold1_out.gff.
Please advice.

Thanks and regards,
Parul Kudtarkar

> You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>
> Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the case,
> just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>
> Thanks,
> Carson
>
>
>
> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>
>>Dear Carson,
>>
>>Thanks once again, we have limited experimental data with very short
>> ESTs.
>>CEGMA is useful for us to gauge our gene-model.
>>On a different note to re-annotate genome(post evidence based
>>prediction(used as training dataset)and abinitio gene-prediction). Here
>>are the control parameters I am using with AED score set to 0.5, however
>> I
>>get predictions that includes the ones with AED score of 1.00 in
>> resulting
>>gff3 file. Though I do see the number of genes reduced to 1/3 of initial
>>gff3 file.
>>
>>#-----Genome (Required for De-Novo Annotation)
>>genome=Scaffold1.fa #genome sequence file in fasta format
>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>> eukaryotic
>>
>>#-----Re-annotation Using MAKER Derived GFF3
>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
>>est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 = no
>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
>>other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 = no
>>
>>#-----MAKER Behavior Options
>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by 0
>>and 1)
>>
>>Thanks and regards,
>>Parul Kudtarkar
>>
>>> Wow 330,000 is a lot. a large portion of genes are likely to be partial
>>>at
>>> best.  You should seriously consider using mRNAseq to capture those by
>>> using maker's est_gff option to pass in results from cufflinks or
>>>trinity.
>>>  Also I wouldn't even try to annotate contigs less than 10kb in size,
>>>just
>>> have maker skip them by setting the min_contig filter in the
>>> maker_opts.ctl file.
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>
>>>
>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>
>>>>Thanks for the guidance Carson, total contig size is 330,611 with N50
>>>> of
>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>> when
>>>>filtering based on AED score 0.75 there are no gene models predicted
>>>>despite the model_gff file has few genes with scores less than 0.75?
>>>>
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>
>>>>> There are certain characteristics that are apparent in this contig.
>>>>First
>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>have
>>>>very short ESTs, and because of the lengths you are probably getting
>>>>many
>>>>> of them to align spuriously which produces very short gene models
>>>>> that
>>>>are
>>>>> more than likely false positives or at the very least just a piece of
>>>>>a
>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>> unless
>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your protein
>>>>alignments also seem to be few and far between.  You probably need to
>>>>add
>>>>> more proteins from a couple of related species, and you might
>>>>> consider
>>>>using protein2genome rather than est2genome as a predictor if you are
>>>>still working to generate a training set. Also est2genome produced
>>>>models
>>>>> almost always have an AED score near 0 so mixing est2genome with the
>>>>AED_threshold with such limited protein support does create an
>>>>artificial
>>>>> bias to get back very short and incomplete models.
>>>>>
>>>>> How many contigs do you have in total and what is the N50 value for
>>>>>the
>>>>assembly? If you have a large number of very short contigs, you will
>>>> get
>>>>very inflated gene counts because you get genes split across contigs
>>>> and
>>>>many contigs tend t be subtle rearrangements of other contigs just
>>>>assembled in a slightly different way (so you can get bits and pieces
>>>> of
>>>>the same genes just rearranged).  This scenario is another confounding
>>>>factor if using the est2genome predictor with short ESTs.  I would
>>>>recommend running CEGMA to get an estimate for the genome completeness
>>>>as
>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>produced
>>>>> is a percent of genes that are found complete (end to end) vs those
>>>>> that
>>>>are partial.  CEGMA identifies house keeping genes that tend to be
>>>>shorter
>>>>> and less intron rich than other genes in the genome, so if CEGMA
>>>>> gives
>>>>> a
>>>>high partial percentage and a low complete percentage, then this
>>>> pattern
>>>>can be expected to be even more exaggerated for other genes in the
>>>>genome.
>>>>>
>>>>> If your genome is highly fragmented or proteins do not align well
>>>>> then
>>>>there are other strategies.  For example, some vertebrate genomes end
>>>> up
>>>>having extremely fragmented assemblies (on the order of 100,000
>>>>contigs),
>>>>> and if they are distantly related to other annotated species few
>>>>proteins
>>>>> may align to the contigs because the introns in the alignments tend
>>>>> to
>>>>be
>>>>> so long and exons so short that it pushes down the significance
>>>>> scores
>>>>too
>>>>> much.  In those cases heavy mRNAseq seems to be the best if not only
>>>>> way
>>>>to get enough evidence to stitch gene models together.
>>>>>
>>>>> Thanks,
>>>>> Carson
>>>>>
>>>>>
>>>>>
>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>
>>>>>>Dear Carson and Daniel,
>>>>>>Thanks. I ran sample file for filtering genes based on AED score. The
>>>>input gff3 file was provided to option model_pred(see attached file
>>>>Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>> least
>>>>>> 5
>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>> predicted
>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>attached
>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>Thanks and regards,
>>>>>>Parul Kudtarkar
>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you just
>>>>>>>want
>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>maker.
>>>>>>>On
>>>>>>> the other hand, if you are trying to build a dataset for training
>>>>>>> gene
>>>>predictors, use the maker2zff script for generating a filtered dataset
>>>>>>>for
>>>>>>> SNAP training.  There are a number of filters available. Just call
>>>>>>> the
>>>>script once without parameters to see the options.
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>>>Hi Parul,
>>>>>>>>I think the way you described (with the maker_opts.ctl file) is how
>>>>you
>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>Daniel
>>>>>>>>Daniel Ence
>>>>>>>>Graduate Student
>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>University of Utah
>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>________________________________________
>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
>>>>[parulk at caltech.edu]
>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>To: Parul Kudtarkar
>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>Also, are there any other parameters that are required when
>>>>>>>>filtering
>>>>based on AED score?
>>>>>>>>> Hello Carson,
>>>>>>>>> Just to confirm, Is there a script that would filter gene models
>>>>>>>>>at
>>>>specific AED score.
>>>>>>>>> Alternatively if I were to do this within maker with regards to
>>>>>>>>>parameters
>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted genes
>>>>>>>>>gff3
>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and 1
>>>>>>>>>> is
>>>>worst
>>>>>>>>>> as
>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
>>>>>>>>>> parameter
>>>>to
>>>>>>>>>> require better matching to the evidence by setting it closer to
>>>>>>>>>>0.
>>>>>>>>>>You
>>>>>>>>>> can
>>>>>>>>>> also try to increase protein homology evidence as some of your
>>>>calls
>>>>>>>>>>may
>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>> --Carson
>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>wrote:
>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>For gene-prediction I get training data-set from evidence based
>>>>prediction, I use this data-set to train SNAP as well as Augustus
>>>>predictions, followed by boot-strapping. I would typically expect
>>>>20-30K
>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>> indicating
>>>>>>>>>>> too
>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>predication/script to retain predictions with AED score 1 and if
>>>>yes
>>>>>>>>>>>how
>>>>>>>>>>>to go about this?
>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>--
>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>>ab
>>>>>>>>>>>.o
>>>>rg
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>>--
>>>>>>>>Scientific Programmer
>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>Beckman Institute,
>>>>>>>>California Institute of Technology
>>>>>>>>http://www.spbase.org
>>>>>>>>_______________________________________________
>>>>>>>>maker-devel mailing list
>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.
>>>>>>>>or
>>>>>>>>g
>>>>_______________________________________________
>>>>>>>>maker-devel mailing list
>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.
>>>>>>>>or
>>>>>>>>g
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>
>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.o
>>>>>>>rg
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>>
>>
>>
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org
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From dence at genetics.utah.edu  Thu Dec  6 13:17:57 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Thu, 6 Dec 2012 19:17:57 +0000
Subject: [maker-devel] AED score
In-Reply-To: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
References: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>

Hi Parul, 

In step one, if protein2genome isn't turned on, then the protein alignments wont be used to generate gene models. Carson said before to use protein2genome to generate gene models for your trainings set, but you should know that those data aren't being used right now. 

In step 2, you can include the est and protein evidence that you used in step one, and the ab-initio predictors will takes those data as hints to guide their predictions. Also, are you reannotating human here? I'm just wondering why the snap file is called Pult, but the augustus species model is human. Also, I think you should include the same masking files from step 1, otherwise the ab-initio predictors will be predicting on the unmasked sequence which will give you many spurious predictions. 

In step 3, I'm not certain what you mean by boot-strapping. The control file you sent for step 3 will just pass-through all of the data from before. 

In step 4, I think what you'll get is pretty close to what you already had in step 3. The gene models from step 3 are already based on the est and protein data from step 1, so without giving any different evidence or ab-initio predictors, I think that you will just get the same gene models that you got from step 3. Those gene models are what you should be using to train snap. Also, is this the same genome as in the other steps? The genome file here is called genome.linear.fa, but before it was called genome.fa.

Step 5. So maker uses both evidence and ab-initio predictions to create models. If you don't give any evidence (EST or protein) maker will not annotate any gene models. You have also changed the augustus species model in this step, but I don't know what you've gained by going from one species to another. You should be training augustus with the gene models and then creating a new species model in augustus. As I understand it, the filter only operates on gene models, not ab-initio predictions or alignments, so it probably isn't doing anything the way you have it set. 

Step 6. I think step 5 and 6 should be combined. I don't know what you mean by boot-strapping here too. 

Hopefully that clears up some of the confusion with how maker works. Carson will probably have a lot of suggestions too. 

Thanks,
Daniel 

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________________
From: Parul Kudtarkar [parulk at caltech.edu]
Sent: Thursday, December 06, 2012 10:08 AM
To: carsonhh at gmail.com
Cc: Daniel Ence; maker-devel at yandell-lab.org
Subject: Re: [maker-devel] AED score

Hi Carson,

Once again thanks for a quick response. We expect to get 25,000 to 30,000
genes.
Here are the step
Step1. EST and proteins are used to predict gene-models. the resulting
file is used as training data-set for SNAP in step2. est2genome is turned
ON
Step2. Augustus and SNAP is used to predict genes.
Step3. The results are re-annoated(boot-strap)
Step4. EST and proteins are used to predict gene-models. The gff file from
step3. is used as model_gff. The resulting file is used as training
data-set for SNAP in step2
Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
contig_size to 10kb

Thanks and regards,
Parul Kudtarkar

I have attached the configuration file for each step.
> Your output has no genes.  They've all been filtered out.  The gene
predictions are left for reference purposes, but there are no gene models
> in the file.  You need to look at the type columns in the GFF3 file -->
match/match_part features are evidence and reference data but not
models.
> All models will have types gene/mRNA/exon/CDS.  For example if you just
want gene models in your file you can use the gff3_merge script with the
-g option, and it will only print out the gene models.
> I think you may be misinterpreting what is happening at different steps,
as well as how to read the result files.  Could you give me a detailed
explanation of what you expect to get back together with your control
files and I can walk you through the configuration, and indicate what to
expect.  Also what was the report like from CEGMA. Could you include the
report file that shows how complete your genome is and how fragmented it
is?
> Thanks,
> Carson
> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>Dear Carson,
>>Thanks for a quick response. keep_preds is set to 0
>>Though for previous step(ab-intio gene predictions keep_preds was set to
1, see Scaffold1_input.gff). I have also attached the output file
Scaffold1_out.gff.
>>Please advice.
>>Thanks and regards,
>>Parul Kudtarkar
>>> You should always get all predictions, but should only get models
(match/match_part) with AED scores less than 0.5.  You should never get
>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
keep_preds set.
>>> Do you have keeps_preds set or gene models with AED values above your
threshold (not match/match_part features)?  If the first one is the
>>>case,
>>> just set it to 0.  If the second one in the case, could you send me
example GFF3?
>>> Thanks,
>>> Carson
>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>Dear Carson,
>>>>Thanks once again, we have limited experimental data with very short
>>>> ESTs.
>>>>CEGMA is useful for us to gauge our gene-model.
>>>>On a different note to re-annotate genome(post evidence based
>>>>prediction(used as training dataset)and abinitio gene-prediction).
Here
>>>>are the control parameters I am using with AED score set to 0.5,
>>>> however
>>>> I
>>>>get predictions that includes the ones with AED score of 1.00 in
>>>> resulting
>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>> initial
>>>>gff3 file.
>>>>#-----Genome (Required for De-Novo Annotation)
>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>> eukaryotic
>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
no
>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>> no
>>>>#-----MAKER Behavior Options
>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
0
>>>>and 1)
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>partial
>>>>>at
>>>>> best.  You should seriously consider using mRNAseq to capture those
by
>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>trinity.
>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
size,
>>>>>just
>>>>> have maker skip them by setting the min_contig filter in the
maker_opts.ctl file.
>>>>> Thanks,
>>>>> Carson
>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
N50
>>>>>> of
>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>> when
>>>>>>filtering based on AED score 0.75 there are no gene models predicted
despite the model_gff file has few genes with scores less than 0.75?
Thanks and regards,
>>>>>>Parul Kudtarkar
>>>>>>> There are certain characteristics that are apparent in this
contig.
>>>>>>First
>>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>>have
>>>>>>very short ESTs, and because of the lengths you are probably getting
many
>>>>>>> of them to align spuriously which produces very short gene models
that
>>>>>>are
>>>>>>> more than likely false positives or at the very least just a piece
>>>>>>>of
>>>>>>>a
>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>> unless
>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>> protein
>>>>>>alignments also seem to be few and far between.  You probably need
to
>>>>>>add
>>>>>>> more proteins from a couple of related species, and you might
consider
>>>>>>using protein2genome rather than est2genome as a predictor if you
are
>>>>>>still working to generate a training set. Also est2genome produced
models
>>>>>>> almost always have an AED score near 0 so mixing est2genome with
the
>>>>>>AED_threshold with such limited protein support does create an
artificial
>>>>>>> bias to get back very short and incomplete models.
>>>>>>> How many contigs do you have in total and what is the N50 value
for
>>>>>>>the
>>>>>>assembly? If you have a large number of very short contigs, you will
>>>>>> get
>>>>>>very inflated gene counts because you get genes split across contigs
>>>>>> and
>>>>>>many contigs tend t be subtle rearrangements of other contigs just
assembled in a slightly different way (so you can get bits and
pieces
>>>>>> of
>>>>>>the same genes just rearranged).  This scenario is another
>>>>>> confounding
>>>>>>factor if using the est2genome predictor with short ESTs.  I would
recommend running CEGMA to get an estimate for the genome
>>>>>> completeness
>>>>>>as
>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>produced
>>>>>>> is a percent of genes that are found complete (end to end) vs
those
>>>>>>> that
>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
shorter
>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
gives
>>>>>>> a
>>>>>>high partial percentage and a low complete percentage, then this
>>>>>> pattern
>>>>>>can be expected to be even more exaggerated for other genes in the
genome.
>>>>>>> If your genome is highly fragmented or proteins do not align well
then
>>>>>>there are other strategies.  For example, some vertebrate genomes
end
>>>>>> up
>>>>>>having extremely fragmented assemblies (on the order of 100,000
contigs),
>>>>>>> and if they are distantly related to other annotated species few
>>>>>>proteins
>>>>>>> may align to the contigs because the introns in the alignments
tend
>>>>>>> to
>>>>>>be
>>>>>>> so long and exons so short that it pushes down the significance
scores
>>>>>>too
>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
only
>>>>>>> way
>>>>>>to get enough evidence to stitch gene models together.
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>Dear Carson and Daniel,
>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
The
>>>>>>input gff3 file was provided to option model_pred(see attached file
Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>> least
>>>>>>>> 5
>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>> predicted
>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>attached
>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>Thanks and regards,
>>>>>>>>Parul Kudtarkar
>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>just
>>>>>>>>>want
>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>maker.
>>>>>>>>>On
>>>>>>>>> the other hand, if you are trying to build a dataset for
training
>>>>>>>>> gene
>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>> dataset
>>>>>>>>>for
>>>>>>>>> SNAP training.  There are a number of filters available. Just
call
>>>>>>>>> the
>>>>>>script once without parameters to see the options.
>>>>>>>>> Thanks,
>>>>>>>>> Carson
>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>wrote:
>>>>>>>>>>Hi Parul,
>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
how
>>>>>>you
>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>Daniel
>>>>>>>>>>Daniel Ence
>>>>>>>>>>Graduate Student
>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>University of Utah
>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>________________________________________
>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>> Kudtarkar
>>>>>>[parulk at caltech.edu]
>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>Also, are there any other parameters that are required when
filtering
>>>>>>based on AED score?
>>>>>>>>>>> Hello Carson,
>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
models
>>>>>>>>>>>at
>>>>>>specific AED score.
>>>>>>>>>>> Alternatively if I were to do this within maker with regards
to
>>>>>>>>>>>parameters
>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>genes
>>>>>>>>>>>gff3
>>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>>Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
1
>>>>>>>>>>>> is
>>>>>>worst
>>>>>>>>>>>> as
>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
parameter
>>>>>>to
>>>>>>>>>>>> require better matching to the evidence by setting it closer
to
>>>>>>>>>>>>0.
>>>>>>>>>>>>You
>>>>>>>>>>>> can
>>>>>>>>>>>> also try to increase protein homology evidence as some of
your
>>>>>>calls
>>>>>>>>>>>>may
>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>> --Carson
>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>> based
>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
predictions, followed by boot-strapping. I would typically expect
20-30K
>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>> indicating
>>>>>>>>>>>>> too
>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>predication/script to retain predictions with AED score 1 and if yes
>>>>>>>>>>>>>how
>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>--
>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
-l
>>>>>>>>>>>>>ab
>>>>>>>>>>>>>.o
>>>>>>rg
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>--
>>>>>>>>>>Scientific Programmer
>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>Beckman Institute,
>>>>>>>>>>California Institute of Technology
>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
b.
>>>>>>>>>>or
>>>>>>>>>>g
>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
b.
>>>>>>>>>>or
>>>>>>>>>>g
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
.o
>>>>>>>>>rg
>>>>>>>>--
>>>>>>>>Scientific Programmer
>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>Beckman Institute,
>>>>>>>>California Institute of Technology
>>>>>>>>http://www.spbase.org
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org

--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org





From parulk at caltech.edu  Thu Dec  6 14:28:18 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Thu, 6 Dec 2012 12:28:18 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>
References: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>
Message-ID: <2337.131.215.15.234.1354825698.squirrel@webmail.caltech.edu>

Dear Daniel,

Thanks for clearing doubts. For augustus I am using the closest
species(lamprey) to species we are annotating. For SNAP the training
set(hmm file) is generated using predictions made from evidence based
gene-predictions(sorry the file name was mis-leading). I think STEP 3-6
are not required(more or less repetitive without further improving
genemodel). Post Step 1(generating training data for SNAP using evidence
based prediction) and Step2(ab-initio gene-prediction using SNAP and
augustus) do you have recommendations for further improving the gene
model?

Thanks and regards,
Parul Kudtarkar

> Hi Parul,
>
> In step one, if protein2genome isn't turned on, then the protein
> alignments wont be used to generate gene models. Carson said before to use
> protein2genome to generate gene models for your trainings set, but you
> should know that those data aren't being used right now.
>
> In step 2, you can include the est and protein evidence that you used in
> step one, and the ab-initio predictors will takes those data as hints to
> guide their predictions. Also, are you reannotating human here? I'm just
> wondering why the snap file is called Pult, but the augustus species model
> is human. Also, I think you should include the same masking files from
> step 1, otherwise the ab-initio predictors will be predicting on the
> unmasked sequence which will give you many spurious predictions.
>
> In step 3, I'm not certain what you mean by boot-strapping. The control
> file you sent for step 3 will just pass-through all of the data from
> before.
>
> In step 4, I think what you'll get is pretty close to what you already had
> in step 3. The gene models from step 3 are already based on the est and
> protein data from step 1, so without giving any different evidence or
> ab-initio predictors, I think that you will just get the same gene models
> that you got from step 3. Those gene models are what you should be using
> to train snap. Also, is this the same genome as in the other steps? The
> genome file here is called genome.linear.fa, but before it was called
> genome.fa.
>
> Step 5. So maker uses both evidence and ab-initio predictions to create
> models. If you don't give any evidence (EST or protein) maker will not
> annotate any gene models. You have also changed the augustus species model
> in this step, but I don't know what you've gained by going from one
> species to another. You should be training augustus with the gene models
> and then creating a new species model in augustus. As I understand it, the
> filter only operates on gene models, not ab-initio predictions or
> alignments, so it probably isn't doing anything the way you have it set.
>
> Step 6. I think step 5 and 6 should be combined. I don't know what you
> mean by boot-strapping here too.
>
> Hopefully that clears up some of the confusion with how maker works.
> Carson will probably have a lot of suggestions too.
>
> Thanks,
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 10:08 AM
> To: carsonhh at gmail.com
> Cc: Daniel Ence; maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
>
> Hi Carson,
>
> Once again thanks for a quick response. We expect to get 25,000 to 30,000
> genes.
> Here are the step
> Step1. EST and proteins are used to predict gene-models. the resulting
> file is used as training data-set for SNAP in step2. est2genome is turned
> ON
> Step2. Augustus and SNAP is used to predict genes.
> Step3. The results are re-annoated(boot-strap)
> Step4. EST and proteins are used to predict gene-models. The gff file from
> step3. is used as model_gff. The resulting file is used as training
> data-set for SNAP in step2
> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
> contig_size to 10kb
>
> Thanks and regards,
> Parul Kudtarkar
>
> I have attached the configuration file for each step.
>> Your output has no genes.  They've all been filtered out.  The gene
> predictions are left for reference purposes, but there are no gene models
>> in the file.  You need to look at the type columns in the GFF3 file -->
> match/match_part features are evidence and reference data but not
> models.
>> All models will have types gene/mRNA/exon/CDS.  For example if you just
> want gene models in your file you can use the gff3_merge script with the
> -g option, and it will only print out the gene models.
>> I think you may be misinterpreting what is happening at different steps,
> as well as how to read the result files.  Could you give me a detailed
> explanation of what you expect to get back together with your control
> files and I can walk you through the configuration, and indicate what to
> expect.  Also what was the report like from CEGMA. Could you include the
> report file that shows how complete your genome is and how fragmented it
> is?
>> Thanks,
>> Carson
>> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>Dear Carson,
>>>Thanks for a quick response. keep_preds is set to 0
>>>Though for previous step(ab-intio gene predictions keep_preds was set to
> 1, see Scaffold1_input.gff). I have also attached the output file
> Scaffold1_out.gff.
>>>Please advice.
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>> You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
>>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>>>> Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the
>>>>case,
>>>> just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>>>> Thanks,
>>>> Carson
>>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>Dear Carson,
>>>>>Thanks once again, we have limited experimental data with very short
>>>>> ESTs.
>>>>>CEGMA is useful for us to gauge our gene-model.
>>>>>On a different note to re-annotate genome(post evidence based
>>>>>prediction(used as training dataset)and abinitio gene-prediction).
> Here
>>>>>are the control parameters I am using with AED score set to 0.5,
>>>>> however
>>>>> I
>>>>>get predictions that includes the ones with AED score of 1.00 in
>>>>> resulting
>>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>> initial
>>>>>gff3 file.
>>>>>#-----Genome (Required for De-Novo Annotation)
>>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>> eukaryotic
>>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
> no
>>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>> no
>>>>>#-----MAKER Behavior Options
>>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
> 0
>>>>>and 1)
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>partial
>>>>>>at
>>>>>> best.  You should seriously consider using mRNAseq to capture those
> by
>>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>>trinity.
>>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
> size,
>>>>>>just
>>>>>> have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>>>>>> Thanks,
>>>>>> Carson
>>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
> N50
>>>>>>> of
>>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>> when
>>>>>>>filtering based on AED score 0.75 there are no gene models predicted
> despite the model_gff file has few genes with scores less than 0.75?
> Thanks and regards,
>>>>>>>Parul Kudtarkar
>>>>>>>> There are certain characteristics that are apparent in this
> contig.
>>>>>>>First
>>>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>>>have
>>>>>>>very short ESTs, and because of the lengths you are probably getting
> many
>>>>>>>> of them to align spuriously which produces very short gene models
> that
>>>>>>>are
>>>>>>>> more than likely false positives or at the very least just a piece
>>>>>>>>of
>>>>>>>>a
>>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>>> unless
>>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>> protein
>>>>>>>alignments also seem to be few and far between.  You probably need
> to
>>>>>>>add
>>>>>>>> more proteins from a couple of related species, and you might
> consider
>>>>>>>using protein2genome rather than est2genome as a predictor if you
> are
>>>>>>>still working to generate a training set. Also est2genome produced
> models
>>>>>>>> almost always have an AED score near 0 so mixing est2genome with
> the
>>>>>>>AED_threshold with such limited protein support does create an
> artificial
>>>>>>>> bias to get back very short and incomplete models.
>>>>>>>> How many contigs do you have in total and what is the N50 value
> for
>>>>>>>>the
>>>>>>>assembly? If you have a large number of very short contigs, you will
>>>>>>> get
>>>>>>>very inflated gene counts because you get genes split across contigs
>>>>>>> and
>>>>>>>many contigs tend t be subtle rearrangements of other contigs just
> assembled in a slightly different way (so you can get bits and
> pieces
>>>>>>> of
>>>>>>>the same genes just rearranged).  This scenario is another
>>>>>>> confounding
>>>>>>>factor if using the est2genome predictor with short ESTs.  I would
> recommend running CEGMA to get an estimate for the genome
>>>>>>> completeness
>>>>>>>as
>>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>>produced
>>>>>>>> is a percent of genes that are found complete (end to end) vs
> those
>>>>>>>> that
>>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
> shorter
>>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
> gives
>>>>>>>> a
>>>>>>>high partial percentage and a low complete percentage, then this
>>>>>>> pattern
>>>>>>>can be expected to be even more exaggerated for other genes in the
> genome.
>>>>>>>> If your genome is highly fragmented or proteins do not align well
> then
>>>>>>>there are other strategies.  For example, some vertebrate genomes
> end
>>>>>>> up
>>>>>>>having extremely fragmented assemblies (on the order of 100,000
> contigs),
>>>>>>>> and if they are distantly related to other annotated species few
>>>>>>>proteins
>>>>>>>> may align to the contigs because the introns in the alignments
> tend
>>>>>>>> to
>>>>>>>be
>>>>>>>> so long and exons so short that it pushes down the significance
> scores
>>>>>>>too
>>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
> only
>>>>>>>> way
>>>>>>>to get enough evidence to stitch gene models together.
>>>>>>>> Thanks,
>>>>>>>> Carson
>>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>>Dear Carson and Daniel,
>>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
> The
>>>>>>>input gff3 file was provided to option model_pred(see attached file
> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>> least
>>>>>>>>> 5
>>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>>> predicted
>>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>>attached
>>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>Thanks and regards,
>>>>>>>>>Parul Kudtarkar
>>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>just
>>>>>>>>>>want
>>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>>maker.
>>>>>>>>>>On
>>>>>>>>>> the other hand, if you are trying to build a dataset for
> training
>>>>>>>>>> gene
>>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>>> dataset
>>>>>>>>>>for
>>>>>>>>>> SNAP training.  There are a number of filters available. Just
> call
>>>>>>>>>> the
>>>>>>>script once without parameters to see the options.
>>>>>>>>>> Thanks,
>>>>>>>>>> Carson
>>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>wrote:
>>>>>>>>>>>Hi Parul,
>>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
> how
>>>>>>>you
>>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>>Daniel
>>>>>>>>>>>Daniel Ence
>>>>>>>>>>>Graduate Student
>>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>>University of Utah
>>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>>________________________________________
>>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>> Kudtarkar
>>>>>>>[parulk at caltech.edu]
>>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>>Also, are there any other parameters that are required when
> filtering
>>>>>>>based on AED score?
>>>>>>>>>>>> Hello Carson,
>>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
> models
>>>>>>>>>>>>at
>>>>>>>specific AED score.
>>>>>>>>>>>> Alternatively if I were to do this within maker with regards
> to
>>>>>>>>>>>>parameters
>>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>genes
>>>>>>>>>>>>gff3
>>>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
> 1
>>>>>>>>>>>>> is
>>>>>>>worst
>>>>>>>>>>>>> as
>>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
> parameter
>>>>>>>to
>>>>>>>>>>>>> require better matching to the evidence by setting it closer
> to
>>>>>>>>>>>>>0.
>>>>>>>>>>>>>You
>>>>>>>>>>>>> can
>>>>>>>>>>>>> also try to increase protein homology evidence as some of
> your
>>>>>>>calls
>>>>>>>>>>>>>may
>>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>>> --Carson
>>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>> based
>>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
> predictions, followed by boot-strapping. I would typically expect
> 20-30K
>>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>> indicating
>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>>predication/script to retain predictions with AED score 1 and if yes
>>>>>>>>>>>>>>how
>>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>>--
>>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
> -l
>>>>>>>>>>>>>>ab
>>>>>>>>>>>>>>.o
>>>>>>>rg
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>--
>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>>>>>>or
>>>>>>>>>>>g
>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>>>>>>or
>>>>>>>>>>>g
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
> .o
>>>>>>>>>>rg
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From dence at genetics.utah.edu  Thu Dec  6 15:35:04 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Thu, 6 Dec 2012 21:35:04 +0000
Subject: [maker-devel] AED score
In-Reply-To: <2337.131.215.15.234.1354825698.squirrel@webmail.caltech.edu>
References: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>,
	<2337.131.215.15.234.1354825698.squirrel@webmail.caltech.edu>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB59B1@mxb2.hg.genetics.utah.edu>

Hi Parul, 
I dont' really have many suggestions for improving the gene models after the annotation is done. Annotation is very dependent on the data you have at hand (the assembly, ESTs and proteins). One thing you could do to get more annotations is to run something like iprscan on the ab-initio predictions that didn't overlap any evidence and look for predictions that contain a pfam domain. Then you can send those predictions back through maker and promote them to gene model status. 

Do you have the CEGMA results that Carson asked about? That really will tell you what kind of annotation results you can expect. If the assembly doesn't have an N50 greater than the expected median gene size, then you can't expect very good results from automated annotation. 

Thanks,
Daniel 

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________________
From: Parul Kudtarkar [parulk at caltech.edu]
Sent: Thursday, December 06, 2012 1:28 PM
To: Daniel Ence
Cc: maker-devel at yandell-lab.org
Subject: Re: [maker-devel] AED score

Dear Daniel,

Thanks for clearing doubts. For augustus I am using the closest
species(lamprey) to species we are annotating. For SNAP the training
set(hmm file) is generated using predictions made from evidence based
gene-predictions(sorry the file name was mis-leading). I think STEP 3-6
are not required(more or less repetitive without further improving
genemodel). Post Step 1(generating training data for SNAP using evidence
based prediction) and Step2(ab-initio gene-prediction using SNAP and
augustus) do you have recommendations for further improving the gene
model?

Thanks and regards,
Parul Kudtarkar

> Hi Parul,
>
> In step one, if protein2genome isn't turned on, then the protein
> alignments wont be used to generate gene models. Carson said before to use
> protein2genome to generate gene models for your trainings set, but you
> should know that those data aren't being used right now.
>
> In step 2, you can include the est and protein evidence that you used in
> step one, and the ab-initio predictors will takes those data as hints to
> guide their predictions. Also, are you reannotating human here? I'm just
> wondering why the snap file is called Pult, but the augustus species model
> is human. Also, I think you should include the same masking files from
> step 1, otherwise the ab-initio predictors will be predicting on the
> unmasked sequence which will give you many spurious predictions.
>
> In step 3, I'm not certain what you mean by boot-strapping. The control
> file you sent for step 3 will just pass-through all of the data from
> before.
>
> In step 4, I think what you'll get is pretty close to what you already had
> in step 3. The gene models from step 3 are already based on the est and
> protein data from step 1, so without giving any different evidence or
> ab-initio predictors, I think that you will just get the same gene models
> that you got from step 3. Those gene models are what you should be using
> to train snap. Also, is this the same genome as in the other steps? The
> genome file here is called genome.linear.fa, but before it was called
> genome.fa.
>
> Step 5. So maker uses both evidence and ab-initio predictions to create
> models. If you don't give any evidence (EST or protein) maker will not
> annotate any gene models. You have also changed the augustus species model
> in this step, but I don't know what you've gained by going from one
> species to another. You should be training augustus with the gene models
> and then creating a new species model in augustus. As I understand it, the
> filter only operates on gene models, not ab-initio predictions or
> alignments, so it probably isn't doing anything the way you have it set.
>
> Step 6. I think step 5 and 6 should be combined. I don't know what you
> mean by boot-strapping here too.
>
> Hopefully that clears up some of the confusion with how maker works.
> Carson will probably have a lot of suggestions too.
>
> Thanks,
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 10:08 AM
> To: carsonhh at gmail.com
> Cc: Daniel Ence; maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
>
> Hi Carson,
>
> Once again thanks for a quick response. We expect to get 25,000 to 30,000
> genes.
> Here are the step
> Step1. EST and proteins are used to predict gene-models. the resulting
> file is used as training data-set for SNAP in step2. est2genome is turned
> ON
> Step2. Augustus and SNAP is used to predict genes.
> Step3. The results are re-annoated(boot-strap)
> Step4. EST and proteins are used to predict gene-models. The gff file from
> step3. is used as model_gff. The resulting file is used as training
> data-set for SNAP in step2
> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
> contig_size to 10kb
>
> Thanks and regards,
> Parul Kudtarkar
>
> I have attached the configuration file for each step.
>> Your output has no genes.  They've all been filtered out.  The gene
> predictions are left for reference purposes, but there are no gene models
>> in the file.  You need to look at the type columns in the GFF3 file -->
> match/match_part features are evidence and reference data but not
> models.
>> All models will have types gene/mRNA/exon/CDS.  For example if you just
> want gene models in your file you can use the gff3_merge script with the
> -g option, and it will only print out the gene models.
>> I think you may be misinterpreting what is happening at different steps,
> as well as how to read the result files.  Could you give me a detailed
> explanation of what you expect to get back together with your control
> files and I can walk you through the configuration, and indicate what to
> expect.  Also what was the report like from CEGMA. Could you include the
> report file that shows how complete your genome is and how fragmented it
> is?
>> Thanks,
>> Carson
>> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>Dear Carson,
>>>Thanks for a quick response. keep_preds is set to 0
>>>Though for previous step(ab-intio gene predictions keep_preds was set to
> 1, see Scaffold1_input.gff). I have also attached the output file
> Scaffold1_out.gff.
>>>Please advice.
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>> You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
>>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>>>> Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the
>>>>case,
>>>> just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>>>> Thanks,
>>>> Carson
>>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>Dear Carson,
>>>>>Thanks once again, we have limited experimental data with very short
>>>>> ESTs.
>>>>>CEGMA is useful for us to gauge our gene-model.
>>>>>On a different note to re-annotate genome(post evidence based
>>>>>prediction(used as training dataset)and abinitio gene-prediction).
> Here
>>>>>are the control parameters I am using with AED score set to 0.5,
>>>>> however
>>>>> I
>>>>>get predictions that includes the ones with AED score of 1.00 in
>>>>> resulting
>>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>> initial
>>>>>gff3 file.
>>>>>#-----Genome (Required for De-Novo Annotation)
>>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>> eukaryotic
>>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
> no
>>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>> no
>>>>>#-----MAKER Behavior Options
>>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
> 0
>>>>>and 1)
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>partial
>>>>>>at
>>>>>> best.  You should seriously consider using mRNAseq to capture those
> by
>>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>>trinity.
>>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
> size,
>>>>>>just
>>>>>> have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>>>>>> Thanks,
>>>>>> Carson
>>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
> N50
>>>>>>> of
>>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>> when
>>>>>>>filtering based on AED score 0.75 there are no gene models predicted
> despite the model_gff file has few genes with scores less than 0.75?
> Thanks and regards,
>>>>>>>Parul Kudtarkar
>>>>>>>> There are certain characteristics that are apparent in this
> contig.
>>>>>>>First
>>>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>>>have
>>>>>>>very short ESTs, and because of the lengths you are probably getting
> many
>>>>>>>> of them to align spuriously which produces very short gene models
> that
>>>>>>>are
>>>>>>>> more than likely false positives or at the very least just a piece
>>>>>>>>of
>>>>>>>>a
>>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>>> unless
>>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>> protein
>>>>>>>alignments also seem to be few and far between.  You probably need
> to
>>>>>>>add
>>>>>>>> more proteins from a couple of related species, and you might
> consider
>>>>>>>using protein2genome rather than est2genome as a predictor if you
> are
>>>>>>>still working to generate a training set. Also est2genome produced
> models
>>>>>>>> almost always have an AED score near 0 so mixing est2genome with
> the
>>>>>>>AED_threshold with such limited protein support does create an
> artificial
>>>>>>>> bias to get back very short and incomplete models.
>>>>>>>> How many contigs do you have in total and what is the N50 value
> for
>>>>>>>>the
>>>>>>>assembly? If you have a large number of very short contigs, you will
>>>>>>> get
>>>>>>>very inflated gene counts because you get genes split across contigs
>>>>>>> and
>>>>>>>many contigs tend t be subtle rearrangements of other contigs just
> assembled in a slightly different way (so you can get bits and
> pieces
>>>>>>> of
>>>>>>>the same genes just rearranged).  This scenario is another
>>>>>>> confounding
>>>>>>>factor if using the est2genome predictor with short ESTs.  I would
> recommend running CEGMA to get an estimate for the genome
>>>>>>> completeness
>>>>>>>as
>>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>>produced
>>>>>>>> is a percent of genes that are found complete (end to end) vs
> those
>>>>>>>> that
>>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
> shorter
>>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
> gives
>>>>>>>> a
>>>>>>>high partial percentage and a low complete percentage, then this
>>>>>>> pattern
>>>>>>>can be expected to be even more exaggerated for other genes in the
> genome.
>>>>>>>> If your genome is highly fragmented or proteins do not align well
> then
>>>>>>>there are other strategies.  For example, some vertebrate genomes
> end
>>>>>>> up
>>>>>>>having extremely fragmented assemblies (on the order of 100,000
> contigs),
>>>>>>>> and if they are distantly related to other annotated species few
>>>>>>>proteins
>>>>>>>> may align to the contigs because the introns in the alignments
> tend
>>>>>>>> to
>>>>>>>be
>>>>>>>> so long and exons so short that it pushes down the significance
> scores
>>>>>>>too
>>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
> only
>>>>>>>> way
>>>>>>>to get enough evidence to stitch gene models together.
>>>>>>>> Thanks,
>>>>>>>> Carson
>>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>>Dear Carson and Daniel,
>>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
> The
>>>>>>>input gff3 file was provided to option model_pred(see attached file
> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>> least
>>>>>>>>> 5
>>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>>> predicted
>>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>>attached
>>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>Thanks and regards,
>>>>>>>>>Parul Kudtarkar
>>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>just
>>>>>>>>>>want
>>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>>maker.
>>>>>>>>>>On
>>>>>>>>>> the other hand, if you are trying to build a dataset for
> training
>>>>>>>>>> gene
>>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>>> dataset
>>>>>>>>>>for
>>>>>>>>>> SNAP training.  There are a number of filters available. Just
> call
>>>>>>>>>> the
>>>>>>>script once without parameters to see the options.
>>>>>>>>>> Thanks,
>>>>>>>>>> Carson
>>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>wrote:
>>>>>>>>>>>Hi Parul,
>>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
> how
>>>>>>>you
>>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>>Daniel
>>>>>>>>>>>Daniel Ence
>>>>>>>>>>>Graduate Student
>>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>>University of Utah
>>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>>________________________________________
>>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>> Kudtarkar
>>>>>>>[parulk at caltech.edu]
>>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>>Also, are there any other parameters that are required when
> filtering
>>>>>>>based on AED score?
>>>>>>>>>>>> Hello Carson,
>>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
> models
>>>>>>>>>>>>at
>>>>>>>specific AED score.
>>>>>>>>>>>> Alternatively if I were to do this within maker with regards
> to
>>>>>>>>>>>>parameters
>>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>genes
>>>>>>>>>>>>gff3
>>>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
> 1
>>>>>>>>>>>>> is
>>>>>>>worst
>>>>>>>>>>>>> as
>>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
> parameter
>>>>>>>to
>>>>>>>>>>>>> require better matching to the evidence by setting it closer
> to
>>>>>>>>>>>>>0.
>>>>>>>>>>>>>You
>>>>>>>>>>>>> can
>>>>>>>>>>>>> also try to increase protein homology evidence as some of
> your
>>>>>>>calls
>>>>>>>>>>>>>may
>>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>>> --Carson
>>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>> based
>>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
> predictions, followed by boot-strapping. I would typically expect
> 20-30K
>>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>> indicating
>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>>predication/script to retain predictions with AED score 1 and if yes
>>>>>>>>>>>>>>how
>>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>>--
>>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
> -l
>>>>>>>>>>>>>>ab
>>>>>>>>>>>>>>.o
>>>>>>>rg
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>--
>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>>>>>>or
>>>>>>>>>>>g
>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>>>>>>or
>>>>>>>>>>>g
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
> .o
>>>>>>>>>>rg
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From parulk at caltech.edu  Thu Dec  6 16:51:42 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Thu, 6 Dec 2012 14:51:42 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB59B1@mxb2.hg.genetics.utah.edu>
References: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>,
	<2337.131.215.15.234.1354825698.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB59B1@mxb2.hg.genetics.utah.edu>
Message-ID: <4347.131.215.15.234.1354834302.squirrel@webmail.caltech.edu>

Dear Daniel,

Once again thanks for extensive help. We get over estimation of number of
genes at the end of step 2. So was wondering if there is a way to pick
only the best annotated. That been said assembly, ESTs and proteins are
not good and I am currently in process of running cegma.

Also for step 2(ab-initio gene-prediction using SNAP and Augustus) is it
best to turn off  keep_preds to remove any possible false-positives. Also
should est2genome turned ON? Of course as pointed in previous email use
est,proteins apart from training data to generate better gene-model and
repeat masking as well to mask repeats for ab-initio predictors?
I believe while running gff3_merge it is best to use option -g to get only
the gene-predictions and filter evidence.

Thanks and regards,
Parul Kudtarkar

> Hi Parul,
> I dont' really have many suggestions for improving the gene models after
> the annotation is done. Annotation is very dependent on the data you have
> at hand (the assembly, ESTs and proteins). One thing you could do to get
> more annotations is to run something like iprscan on the ab-initio
> predictions that didn't overlap any evidence and look for predictions that
> contain a pfam domain. Then you can send those predictions back through
> maker and promote them to gene model status.
>
> Do you have the CEGMA results that Carson asked about? That really will
> tell you what kind of annotation results you can expect. If the assembly
> doesn't have an N50 greater than the expected median gene size, then you
> can't expect very good results from automated annotation.
>
> Thanks,
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 1:28 PM
> To: Daniel Ence
> Cc: maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
>
> Dear Daniel,
>
> Thanks for clearing doubts. For augustus I am using the closest
> species(lamprey) to species we are annotating. For SNAP the training
> set(hmm file) is generated using predictions made from evidence based
> gene-predictions(sorry the file name was mis-leading). I think STEP 3-6
> are not required(more or less repetitive without further improving
> genemodel). Post Step 1(generating training data for SNAP using evidence
> based prediction) and Step2(ab-initio gene-prediction using SNAP and
> augustus) do you have recommendations for further improving the gene
> model?
>
> Thanks and regards,
> Parul Kudtarkar
>
>> Hi Parul,
>>
>> In step one, if protein2genome isn't turned on, then the protein
>> alignments wont be used to generate gene models. Carson said before to
>> use
>> protein2genome to generate gene models for your trainings set, but you
>> should know that those data aren't being used right now.
>>
>> In step 2, you can include the est and protein evidence that you used in
>> step one, and the ab-initio predictors will takes those data as hints to
>> guide their predictions. Also, are you reannotating human here? I'm just
>> wondering why the snap file is called Pult, but the augustus species
>> model
>> is human. Also, I think you should include the same masking files from
>> step 1, otherwise the ab-initio predictors will be predicting on the
>> unmasked sequence which will give you many spurious predictions.
>>
>> In step 3, I'm not certain what you mean by boot-strapping. The control
>> file you sent for step 3 will just pass-through all of the data from
>> before.
>>
>> In step 4, I think what you'll get is pretty close to what you already
>> had
>> in step 3. The gene models from step 3 are already based on the est and
>> protein data from step 1, so without giving any different evidence or
>> ab-initio predictors, I think that you will just get the same gene
>> models
>> that you got from step 3. Those gene models are what you should be using
>> to train snap. Also, is this the same genome as in the other steps? The
>> genome file here is called genome.linear.fa, but before it was called
>> genome.fa.
>>
>> Step 5. So maker uses both evidence and ab-initio predictions to create
>> models. If you don't give any evidence (EST or protein) maker will not
>> annotate any gene models. You have also changed the augustus species
>> model
>> in this step, but I don't know what you've gained by going from one
>> species to another. You should be training augustus with the gene models
>> and then creating a new species model in augustus. As I understand it,
>> the
>> filter only operates on gene models, not ab-initio predictions or
>> alignments, so it probably isn't doing anything the way you have it set.
>>
>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>> mean by boot-strapping here too.
>>
>> Hopefully that clears up some of the confusion with how maker works.
>> Carson will probably have a lot of suggestions too.
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: Parul Kudtarkar [parulk at caltech.edu]
>> Sent: Thursday, December 06, 2012 10:08 AM
>> To: carsonhh at gmail.com
>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>> Subject: Re: [maker-devel] AED score
>>
>> Hi Carson,
>>
>> Once again thanks for a quick response. We expect to get 25,000 to
>> 30,000
>> genes.
>> Here are the step
>> Step1. EST and proteins are used to predict gene-models. the resulting
>> file is used as training data-set for SNAP in step2. est2genome is
>> turned
>> ON
>> Step2. Augustus and SNAP is used to predict genes.
>> Step3. The results are re-annoated(boot-strap)
>> Step4. EST and proteins are used to predict gene-models. The gff file
>> from
>> step3. is used as model_gff. The resulting file is used as training
>> data-set for SNAP in step2
>> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>> contig_size to 10kb
>>
>> Thanks and regards,
>> Parul Kudtarkar
>>
>> I have attached the configuration file for each step.
>>> Your output has no genes.  They've all been filtered out.  The gene
>> predictions are left for reference purposes, but there are no gene
>> models
>>> in the file.  You need to look at the type columns in the GFF3 file -->
>> match/match_part features are evidence and reference data but not
>> models.
>>> All models will have types gene/mRNA/exon/CDS.  For example if you just
>> want gene models in your file you can use the gff3_merge script with the
>> -g option, and it will only print out the gene models.
>>> I think you may be misinterpreting what is happening at different
>>> steps,
>> as well as how to read the result files.  Could you give me a detailed
>> explanation of what you expect to get back together with your control
>> files and I can walk you through the configuration, and indicate what to
>> expect.  Also what was the report like from CEGMA. Could you include the
>> report file that shows how complete your genome is and how fragmented it
>> is?
>>> Thanks,
>>> Carson
>>> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>Dear Carson,
>>>>Thanks for a quick response. keep_preds is set to 0
>>>>Though for previous step(ab-intio gene predictions keep_preds was set
>>>> to
>> 1, see Scaffold1_input.gff). I have also attached the output file
>> Scaffold1_out.gff.
>>>>Please advice.
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>> You should always get all predictions, but should only get models
>> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>> keep_preds set.
>>>>> Do you have keeps_preds set or gene models with AED values above your
>> threshold (not match/match_part features)?  If the first one is the
>>>>>case,
>>>>> just set it to 0.  If the second one in the case, could you send me
>> example GFF3?
>>>>> Thanks,
>>>>> Carson
>>>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>Dear Carson,
>>>>>>Thanks once again, we have limited experimental data with very short
>>>>>> ESTs.
>>>>>>CEGMA is useful for us to gauge our gene-model.
>>>>>>On a different note to re-annotate genome(post evidence based
>>>>>>prediction(used as training dataset)and abinitio gene-prediction).
>> Here
>>>>>>are the control parameters I am using with AED score set to 0.5,
>>>>>> however
>>>>>> I
>>>>>>get predictions that includes the ones with AED score of 1.00 in
>>>>>> resulting
>>>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>> initial
>>>>>>gff3 file.
>>>>>>#-----Genome (Required for De-Novo Annotation)
>>>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>> eukaryotic
>>>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0
>>>>>> =
>> no
>>>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>> no
>>>>>>#-----MAKER Behavior Options
>>>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
>> 0
>>>>>>and 1)
>>>>>>Thanks and regards,
>>>>>>Parul Kudtarkar
>>>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>partial
>>>>>>>at
>>>>>>> best.  You should seriously consider using mRNAseq to capture those
>> by
>>>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>>>trinity.
>>>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
>> size,
>>>>>>>just
>>>>>>> have maker skip them by setting the min_contig filter in the
>> maker_opts.ctl file.
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
>> N50
>>>>>>>> of
>>>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>>> when
>>>>>>>>filtering based on AED score 0.75 there are no gene models
>>>>>>>> predicted
>> despite the model_gff file has few genes with scores less than 0.75?
>> Thanks and regards,
>>>>>>>>Parul Kudtarkar
>>>>>>>>> There are certain characteristics that are apparent in this
>> contig.
>>>>>>>>First
>>>>>>>>> it seems to be repeat rich with a very low gene density.  You
>>>>>>>>> also
>>>>>>>>>have
>>>>>>>>very short ESTs, and because of the lengths you are probably
>>>>>>>> getting
>> many
>>>>>>>>> of them to align spuriously which produces very short gene models
>> that
>>>>>>>>are
>>>>>>>>> more than likely false positives or at the very least just a
>>>>>>>>> piece
>>>>>>>>>of
>>>>>>>>>a
>>>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>> unless
>>>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>> protein
>>>>>>>>alignments also seem to be few and far between.  You probably need
>> to
>>>>>>>>add
>>>>>>>>> more proteins from a couple of related species, and you might
>> consider
>>>>>>>>using protein2genome rather than est2genome as a predictor if you
>> are
>>>>>>>>still working to generate a training set. Also est2genome produced
>> models
>>>>>>>>> almost always have an AED score near 0 so mixing est2genome with
>> the
>>>>>>>>AED_threshold with such limited protein support does create an
>> artificial
>>>>>>>>> bias to get back very short and incomplete models.
>>>>>>>>> How many contigs do you have in total and what is the N50 value
>> for
>>>>>>>>>the
>>>>>>>>assembly? If you have a large number of very short contigs, you
>>>>>>>> will
>>>>>>>> get
>>>>>>>>very inflated gene counts because you get genes split across
>>>>>>>> contigs
>>>>>>>> and
>>>>>>>>many contigs tend t be subtle rearrangements of other contigs just
>> assembled in a slightly different way (so you can get bits and
>> pieces
>>>>>>>> of
>>>>>>>>the same genes just rearranged).  This scenario is another
>>>>>>>> confounding
>>>>>>>>factor if using the est2genome predictor with short ESTs.  I would
>> recommend running CEGMA to get an estimate for the genome
>>>>>>>> completeness
>>>>>>>>as
>>>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>>>produced
>>>>>>>>> is a percent of genes that are found complete (end to end) vs
>> those
>>>>>>>>> that
>>>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
>> shorter
>>>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
>> gives
>>>>>>>>> a
>>>>>>>>high partial percentage and a low complete percentage, then this
>>>>>>>> pattern
>>>>>>>>can be expected to be even more exaggerated for other genes in the
>> genome.
>>>>>>>>> If your genome is highly fragmented or proteins do not align well
>> then
>>>>>>>>there are other strategies.  For example, some vertebrate genomes
>> end
>>>>>>>> up
>>>>>>>>having extremely fragmented assemblies (on the order of 100,000
>> contigs),
>>>>>>>>> and if they are distantly related to other annotated species few
>>>>>>>>proteins
>>>>>>>>> may align to the contigs because the introns in the alignments
>> tend
>>>>>>>>> to
>>>>>>>>be
>>>>>>>>> so long and exons so short that it pushes down the significance
>> scores
>>>>>>>>too
>>>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
>> only
>>>>>>>>> way
>>>>>>>>to get enough evidence to stitch gene models together.
>>>>>>>>> Thanks,
>>>>>>>>> Carson
>>>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>>>Dear Carson and Daniel,
>>>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
>> The
>>>>>>>>input gff3 file was provided to option model_pred(see attached file
>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>> least
>>>>>>>>>> 5
>>>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>>>> predicted
>>>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>>>attached
>>>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>Thanks and regards,
>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>>just
>>>>>>>>>>>want
>>>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>>>maker.
>>>>>>>>>>>On
>>>>>>>>>>> the other hand, if you are trying to build a dataset for
>> training
>>>>>>>>>>> gene
>>>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>>>> dataset
>>>>>>>>>>>for
>>>>>>>>>>> SNAP training.  There are a number of filters available. Just
>> call
>>>>>>>>>>> the
>>>>>>>>script once without parameters to see the options.
>>>>>>>>>>> Thanks,
>>>>>>>>>>> Carson
>>>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>>wrote:
>>>>>>>>>>>>Hi Parul,
>>>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
>> how
>>>>>>>>you
>>>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>>>Daniel
>>>>>>>>>>>>Daniel Ence
>>>>>>>>>>>>Graduate Student
>>>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>>>University of Utah
>>>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>>>________________________________________
>>>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>> Kudtarkar
>>>>>>>>[parulk at caltech.edu]
>>>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>>>Also, are there any other parameters that are required when
>> filtering
>>>>>>>>based on AED score?
>>>>>>>>>>>>> Hello Carson,
>>>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
>> models
>>>>>>>>>>>>>at
>>>>>>>>specific AED score.
>>>>>>>>>>>>> Alternatively if I were to do this within maker with regards
>> to
>>>>>>>>>>>>>parameters
>>>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>>genes
>>>>>>>>>>>>>gff3
>>>>>>>>>>>>> file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>> threshold?
>>>>>>>>Thanks and regards,
>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
>> 1
>>>>>>>>>>>>>> is
>>>>>>>>worst
>>>>>>>>>>>>>> as
>>>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
>> parameter
>>>>>>>>to
>>>>>>>>>>>>>> require better matching to the evidence by setting it closer
>> to
>>>>>>>>>>>>>>0.
>>>>>>>>>>>>>>You
>>>>>>>>>>>>>> can
>>>>>>>>>>>>>> also try to increase protein homology evidence as some of
>> your
>>>>>>>>calls
>>>>>>>>>>>>>>may
>>>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>>>> --Carson
>>>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>>> based
>>>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
>> predictions, followed by boot-strapping. I would typically expect
>> 20-30K
>>>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>>> indicating
>>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>>>predication/script to retain predictions with AED score 1 and if
>>>>>>>> yes
>>>>>>>>>>>>>>>how
>>>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>>>--
>>>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>> -l
>>>>>>>>>>>>>>>ab
>>>>>>>>>>>>>>>.o
>>>>>>>>rg
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>--
>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>> b.
>>>>>>>>>>>>or
>>>>>>>>>>>>g
>>>>>>>>_______________________________________________
>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>> b.
>>>>>>>>>>>>or
>>>>>>>>>>>>g
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>> .o
>>>>>>>>>>>rg
>>>>>>>>>>--
>>>>>>>>>>Scientific Programmer
>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>Beckman Institute,
>>>>>>>>>>California Institute of Technology
>>>>>>>>>>http://www.spbase.org
>>>>>>>>--
>>>>>>>>Scientific Programmer
>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>Beckman Institute,
>>>>>>>>California Institute of Technology
>>>>>>>>http://www.spbase.org
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>>
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From parulk at caltech.edu  Thu Dec  6 11:08:23 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Thu, 6 Dec 2012 09:08:23 -0800 (PST)
Subject: [maker-devel] AED score
Message-ID: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>

Hi Carson,

Once again thanks for a quick response. We expect to get 25,000 to 30,000
genes.
Here are the step
Step1. EST and proteins are used to predict gene-models. the resulting
file is used as training data-set for SNAP in step2. est2genome is turned
ON
Step2. Augustus and SNAP is used to predict genes.
Step3. The results are re-annoated(boot-strap)
Step4. EST and proteins are used to predict gene-models. The gff file from
step3. is used as model_gff. The resulting file is used as training
data-set for SNAP in step2
Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
contig_size to 10kb

Thanks and regards,
Parul Kudtarkar

I have attached the configuration file for each step.
> Your output has no genes.  They've all been filtered out.  The gene
predictions are left for reference purposes, but there are no gene models
> in the file.  You need to look at the type columns in the GFF3 file -->
match/match_part features are evidence and reference data but not
models.
> All models will have types gene/mRNA/exon/CDS.  For example if you just
want gene models in your file you can use the gff3_merge script with the
-g option, and it will only print out the gene models.
> I think you may be misinterpreting what is happening at different steps,
as well as how to read the result files.  Could you give me a detailed
explanation of what you expect to get back together with your control
files and I can walk you through the configuration, and indicate what to
expect.  Also what was the report like from CEGMA. Could you include the
report file that shows how complete your genome is and how fragmented it
is?
> Thanks,
> Carson
> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>Dear Carson,
>>Thanks for a quick response. keep_preds is set to 0
>>Though for previous step(ab-intio gene predictions keep_preds was set to
1, see Scaffold1_input.gff). I have also attached the output file
Scaffold1_out.gff.
>>Please advice.
>>Thanks and regards,
>>Parul Kudtarkar
>>> You should always get all predictions, but should only get models
(match/match_part) with AED scores less than 0.5.  You should never get
>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
keep_preds set.
>>> Do you have keeps_preds set or gene models with AED values above your
threshold (not match/match_part features)?  If the first one is the
>>>case,
>>> just set it to 0.  If the second one in the case, could you send me
example GFF3?
>>> Thanks,
>>> Carson
>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>Dear Carson,
>>>>Thanks once again, we have limited experimental data with very short
>>>> ESTs.
>>>>CEGMA is useful for us to gauge our gene-model.
>>>>On a different note to re-annotate genome(post evidence based
>>>>prediction(used as training dataset)and abinitio gene-prediction).
Here
>>>>are the control parameters I am using with AED score set to 0.5,
>>>> however
>>>> I
>>>>get predictions that includes the ones with AED score of 1.00 in
>>>> resulting
>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>> initial
>>>>gff3 file.
>>>>#-----Genome (Required for De-Novo Annotation)
>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>> eukaryotic
>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
no
>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>> no
>>>>#-----MAKER Behavior Options
>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
0
>>>>and 1)
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>partial
>>>>>at
>>>>> best.  You should seriously consider using mRNAseq to capture those
by
>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>trinity.
>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
size,
>>>>>just
>>>>> have maker skip them by setting the min_contig filter in the
maker_opts.ctl file.
>>>>> Thanks,
>>>>> Carson
>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
N50
>>>>>> of
>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>> when
>>>>>>filtering based on AED score 0.75 there are no gene models predicted
despite the model_gff file has few genes with scores less than 0.75?
Thanks and regards,
>>>>>>Parul Kudtarkar
>>>>>>> There are certain characteristics that are apparent in this
contig.
>>>>>>First
>>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>>have
>>>>>>very short ESTs, and because of the lengths you are probably getting
many
>>>>>>> of them to align spuriously which produces very short gene models
that
>>>>>>are
>>>>>>> more than likely false positives or at the very least just a piece
>>>>>>>of
>>>>>>>a
>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>> unless
>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>> protein
>>>>>>alignments also seem to be few and far between.  You probably need
to
>>>>>>add
>>>>>>> more proteins from a couple of related species, and you might
consider
>>>>>>using protein2genome rather than est2genome as a predictor if you
are
>>>>>>still working to generate a training set. Also est2genome produced
models
>>>>>>> almost always have an AED score near 0 so mixing est2genome with
the
>>>>>>AED_threshold with such limited protein support does create an
artificial
>>>>>>> bias to get back very short and incomplete models.
>>>>>>> How many contigs do you have in total and what is the N50 value
for
>>>>>>>the
>>>>>>assembly? If you have a large number of very short contigs, you will
>>>>>> get
>>>>>>very inflated gene counts because you get genes split across contigs
>>>>>> and
>>>>>>many contigs tend t be subtle rearrangements of other contigs just
assembled in a slightly different way (so you can get bits and
pieces
>>>>>> of
>>>>>>the same genes just rearranged).  This scenario is another
>>>>>> confounding
>>>>>>factor if using the est2genome predictor with short ESTs.  I would
recommend running CEGMA to get an estimate for the genome
>>>>>> completeness
>>>>>>as
>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>produced
>>>>>>> is a percent of genes that are found complete (end to end) vs
those
>>>>>>> that
>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
shorter
>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
gives
>>>>>>> a
>>>>>>high partial percentage and a low complete percentage, then this
>>>>>> pattern
>>>>>>can be expected to be even more exaggerated for other genes in the
genome.
>>>>>>> If your genome is highly fragmented or proteins do not align well
then
>>>>>>there are other strategies.  For example, some vertebrate genomes
end
>>>>>> up
>>>>>>having extremely fragmented assemblies (on the order of 100,000
contigs),
>>>>>>> and if they are distantly related to other annotated species few
>>>>>>proteins
>>>>>>> may align to the contigs because the introns in the alignments
tend
>>>>>>> to
>>>>>>be
>>>>>>> so long and exons so short that it pushes down the significance
scores
>>>>>>too
>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
only
>>>>>>> way
>>>>>>to get enough evidence to stitch gene models together.
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>Dear Carson and Daniel,
>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
The
>>>>>>input gff3 file was provided to option model_pred(see attached file
Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>> least
>>>>>>>> 5
>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>> predicted
>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>attached
>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>Thanks and regards,
>>>>>>>>Parul Kudtarkar
>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>just
>>>>>>>>>want
>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>maker.
>>>>>>>>>On
>>>>>>>>> the other hand, if you are trying to build a dataset for
training
>>>>>>>>> gene
>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>> dataset
>>>>>>>>>for
>>>>>>>>> SNAP training.  There are a number of filters available. Just
call
>>>>>>>>> the
>>>>>>script once without parameters to see the options.
>>>>>>>>> Thanks,
>>>>>>>>> Carson
>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>wrote:
>>>>>>>>>>Hi Parul,
>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
how
>>>>>>you
>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>Daniel
>>>>>>>>>>Daniel Ence
>>>>>>>>>>Graduate Student
>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>University of Utah
>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>________________________________________
>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>> Kudtarkar
>>>>>>[parulk at caltech.edu]
>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>Also, are there any other parameters that are required when
filtering
>>>>>>based on AED score?
>>>>>>>>>>> Hello Carson,
>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
models
>>>>>>>>>>>at
>>>>>>specific AED score.
>>>>>>>>>>> Alternatively if I were to do this within maker with regards
to
>>>>>>>>>>>parameters
>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>genes
>>>>>>>>>>>gff3
>>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>>Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
1
>>>>>>>>>>>> is
>>>>>>worst
>>>>>>>>>>>> as
>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
parameter
>>>>>>to
>>>>>>>>>>>> require better matching to the evidence by setting it closer
to
>>>>>>>>>>>>0.
>>>>>>>>>>>>You
>>>>>>>>>>>> can
>>>>>>>>>>>> also try to increase protein homology evidence as some of
your
>>>>>>calls
>>>>>>>>>>>>may
>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>> --Carson
>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>> based
>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
predictions, followed by boot-strapping. I would typically expect
20-30K
>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>> indicating
>>>>>>>>>>>>> too
>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>predication/script to retain predictions with AED score 1 and if yes
>>>>>>>>>>>>>how
>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>--
>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
-l
>>>>>>>>>>>>>ab
>>>>>>>>>>>>>.o
>>>>>>rg
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>--
>>>>>>>>>>Scientific Programmer
>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>Beckman Institute,
>>>>>>>>>>California Institute of Technology
>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
b.
>>>>>>>>>>or
>>>>>>>>>>g
>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
b.
>>>>>>>>>>or
>>>>>>>>>>g
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
.o
>>>>>>>>>rg
>>>>>>>>--
>>>>>>>>Scientific Programmer
>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>Beckman Institute,
>>>>>>>>California Institute of Technology
>>>>>>>>http://www.spbase.org
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org

--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org


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From carsonhh at gmail.com  Fri Dec  7 09:22:10 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 07 Dec 2012 10:22:10 -0500
Subject: [maker-devel] AED score
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>
Message-ID: <CCE76039.16D5C%carsonhh@gmail.com>

Just to add to Daniels comments.

Things to change in step 1:
> protein= <just try and add more protein evidence in general>
> est2genome=0
> protein2genome=1
> split_hit=20000
> min_contig=50000

Reasoning:
> Your ESTs are very short especially if this is a lamprey species which have
> very long introns and really short exons.  In lamprey (i.e. Petromyzon
> marinus), genes tend to be very long (remember gene lengths include introns
> and UTR and is not just the size of the coding sequence), so contigs shorter
> than 50kb are useless for training as you are unlikely to get nice complete
> gene models on those.  Also lampreys have very long introns, so you have to
> allow for bigger introns in alignments (split_hit parameter).  Finally add as
> much protein evidence from as many sources as possible.  Your maker training
> run will take a long time as proteins take forever to align, but because of
> the evolutionary distance of lamprey from everything else and the short exon
> structure of its genome, very little aligns directly to its genome from other
> deuterstome and vertebrate species.  I'm assuming this is a lamprey species
> because of what you said about the  augustus species file you are using.
> Really the only thing closely related to lampreys unfortunately are other
> lampreys.  Lancelets, hagfish, and sharks are not closely related to lamprey
> (while they branch closely together on the tree of life, there are too many
> years since the last common ancestor).  So while they may have similar issues
> related to annotation (long introns and short exons etc.) they will not really
> match that well for the gene predictor or even protein alignments.

Additional note:
> I have training files for the lamprey species Petromyzon marinus for both
> Augustus and SNAP that I could share with you in a few week, when the genome
> publication is is released.  But before that happens, new gene models will be
> available  through the UCSC browser (hopefully within a couple of weeks), and
> gene models are already available through ENSEMBL.  Get those protein files
> for training, it may be a big help for you.  If you want early access to the
> lamprey training files for Augustus and SNAP, you would have to request it
> from Weiming Li at Michigan State University (the head of that genome
> project).
> 


Things to change in step 2:
> Optimally you would be doing de novo training using mRNAseq results, but with
> on;ly sparse protein alignments and such a fragmented assembly, you are
> probably better off just trying to adapt the human HMM files.  They won't
> match that well, but you probably won't have the evidence for De Novo
> training.  First make a copy of the augustus human species directory and
> rename it to lamprey (cp -R  ?/augustus/config/species/human
> ?/augustus/config/species/lamprey).  Use it as the base species for retraining
> augustus using your new models.  You will have to edit multiple files in the
> directory after you copy it so that they no longer say human or homo sapiens
> internally or in the file name.  Use maker2zff to generate the filtered ZFF
> file for training SNAP, but don't train SNAP.  Rather use the training file to
> better train Augustus info here (just ignore the CEGMA part) -->
> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
> 
> MAKE a backup of the step 1 maker output directory and run step 2 in the old
> step 1 directory (this allows you to change the parameters and reuse files
> form step 1 so you don't have to recalculate all the protein and EST
> alignments).  So control files for step 2 are identical to step 1 except for
> these parameters.
> 
> protein2genome=0
> augustus_species=lamprey
> snaphmm=lamprey.hmm #optional if you decide to use SNAP
> 
> Don't both training SNAP here as you probably won't have enough data and you
> assembly is too fragmented for it to work well, so just stick to augustus.
> Try SNAP if you want just to see how well it works.  Manually open up the
> largest contigs in a viewer to look at the models produced from the MAKER run
> to see if they look reasonable (this will also help you decide whether to keep
> SNAP).
> 

Things to change in step 3:
> Step 3 should just be a clone of step 2 as it is bootstrapping.  But make
> copies of ?/augustus/config/species/lamprey and save it to
> ?/augustus/config/species/lamprey2 (editing all the files and names as you did
> in step 2). This way you don't loose that training data if you decide to step
> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
> 
> augustus_species=lamprey2
> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
> 
> Make a backup of Step 2 and run step 3 in the old Step 2 directory (This is
> for file reuse, so the step will run fast).  This must be the exact same step
> directory as step 2 for the reuse trick to work.
> 
> Manually review the models and if you are satisfied move to step 4.  Also note
> that most parameters including the protein, EST, and repeats should not change
> from step1-step3, and should not be removed for step 4 either, you can add
> more evidence, but don't remove evidence (like the repeats).
> 
> 
Things to change in step 4:
> For this step, just set min_contig=10000 and rerun MAKER inside the step 3
> directory to get the smaller contigs annotated.  This should be your final
> step, although you can try altering other parameters or adding more evidence
> sources here etc.
> 
> 
For other things to keep in mind, you should consider taking extra time to
build a comprehensive library of repeats for your species, I know that
Petromyzon marinus was virtually unannotatable until we had a very deep
repeat library built for it.  Any repeat library should be used in all
steps.  Also for lamprey, you will expect between 20,000-30,000 genes both
because of your assemblies fragmentation and because of some ancestral
genome duplication.  Also be aware that lampreys appear to undergo
programmed genome loss in somatic tissues, so any gene count you get is only
going to represent a maximum of 75-80% of all genes unless the assembly is
derived from germline tissue.

Thanks,
Carson


> 
On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:

> Hi Parul, 
> 
> In step one, if protein2genome isn't turned on, then the protein alignments
> wont be used to generate gene models. Carson said before to use protein2genome
> to generate gene models for your trainings set, but you should know that those
> data aren't being used right now.
> 
> In step 2, you can include the est and protein evidence that you used in step
> one, and the ab-initio predictors will takes those data as hints to guide
> their predictions. Also, are you reannotating human here? I'm just wondering
> why the snap file is called Pult, but the augustus species model is human.
> Also, I think you should include the same masking files from step 1, otherwise
> the ab-initio predictors will be predicting on the unmasked sequence which
> will give you many spurious predictions.
> 
> In step 3, I'm not certain what you mean by boot-strapping. The control file
> you sent for step 3 will just pass-through all of the data from before.
> 
> In step 4, I think what you'll get is pretty close to what you already had in
> step 3. The gene models from step 3 are already based on the est and protein
> data from step 1, so without giving any different evidence or ab-initio
> predictors, I think that you will just get the same gene models that you got
> from step 3. Those gene models are what you should be using to train snap.
> Also, is this the same genome as in the other steps? The genome file here is
> called genome.linear.fa, but before it was called genome.fa.
> 
> Step 5. So maker uses both evidence and ab-initio predictions to create
> models. If you don't give any evidence (EST or protein) maker will not
> annotate any gene models. You have also changed the augustus species model in
> this step, but I don't know what you've gained by going from one species to
> another. You should be training augustus with the gene models and then
> creating a new species model in augustus. As I understand it, the filter only
> operates on gene models, not ab-initio predictions or alignments, so it
> probably isn't doing anything the way you have it set.
> 
> Step 6. I think step 5 and 6 should be combined. I don't know what you mean by
> boot-strapping here too.
> 
> Hopefully that clears up some of the confusion with how maker works. Carson
> will probably have a lot of suggestions too.
> 
> Thanks,
> Daniel 
> 
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 10:08 AM
> To: carsonhh at gmail.com
> Cc: Daniel Ence; maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
> 
> Hi Carson,
> 
> Once again thanks for a quick response. We expect to get 25,000 to 30,000
> genes.
> Here are the step
> Step1. EST and proteins are used to predict gene-models. the resulting
> file is used as training data-set for SNAP in step2. est2genome is turned
> ON
> Step2. Augustus and SNAP is used to predict genes.
> Step3. The results are re-annoated(boot-strap)
> Step4. EST and proteins are used to predict gene-models. The gff file from
> step3. is used as model_gff. The resulting file is used as training
> data-set for SNAP in step2
> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
> contig_size to 10kb
> 
> Thanks and regards,
> Parul Kudtarkar
> 
> I have attached the configuration file for each step.
>>  Your output has no genes.  They've all been filtered out.  The gene
> predictions are left for reference purposes, but there are no gene models
>>  in the file.  You need to look at the type columns in the GFF3 file -->
> match/match_part features are evidence and reference data but not
> models.
>>  All models will have types gene/mRNA/exon/CDS.  For example if you just
> want gene models in your file you can use the gff3_merge script with the
> -g option, and it will only print out the gene models.
>>  I think you may be misinterpreting what is happening at different steps,
> as well as how to read the result files.  Could you give me a detailed
> explanation of what you expect to get back together with your control
> files and I can walk you through the configuration, and indicate what to
> expect.  Also what was the report like from CEGMA. Could you include the
> report file that shows how complete your genome is and how fragmented it
> is?
>>  Thanks,
>>  Carson
>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>> Dear Carson,
>>> Thanks for a quick response. keep_preds is set to 0
>>> Though for previous step(ab-intio gene predictions keep_preds was set to
> 1, see Scaffold1_input.gff). I have also attached the output file
> Scaffold1_out.gff.
>>> Please advice.
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>>  You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>>>>  Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the
>>>> case,
>>>>  just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>>>>  Thanks,
>>>>  Carson
>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>> Dear Carson,
>>>>> Thanks once again, we have limited experimental data with very short
>>>>>  ESTs.
>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>> On a different note to re-annotate genome(post evidence based
>>>>> prediction(used as training dataset)and abinitio gene-prediction).
> Here
>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>  however
>>>>>  I
>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>  resulting
>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>  initial
>>>>> gff3 file.
>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>  eukaryotic
>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
> no
>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>  no
>>>>> #-----MAKER Behavior Options
>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
> 0
>>>>> and 1)
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>> partial
>>>>>> at
>>>>>>  best.  You should seriously consider using mRNAseq to capture those
> by
>>>>>>  using maker's est_gff option to pass in results from cufflinks or
>>>>>> trinity.
>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
> size,
>>>>>> just
>>>>>>  have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>>>>>>  Thanks,
>>>>>>  Carson
>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Thanks for the guidance Carson, total contig size is 330,611 with
> N50
>>>>>>>  of
>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>>  when
>>>>>>> filtering based on AED score 0.75 there are no gene models predicted
> despite the model_gff file has few genes with scores less than 0.75?
> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>  There are certain characteristics that are apparent in this
> contig.
>>>>>>> First
>>>>>>>  it seems to be repeat rich with a very low gene density.  You also
>>>>>>> have
>>>>>>> very short ESTs, and because of the lengths you are probably getting
> many
>>>>>>>  of them to align spuriously which produces very short gene models
> that
>>>>>>> are
>>>>>>>  more than likely false positives or at the very least just a piece
>>>>>>> of
>>>>>>> a
>>>>>>> gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>  unless
>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>  protein
>>>>>>> alignments also seem to be few and far between.  You probably need
> to
>>>>>>> add
>>>>>>>  more proteins from a couple of related species, and you might
> consider
>>>>>>> using protein2genome rather than est2genome as a predictor if you
> are
>>>>>>> still working to generate a training set. Also est2genome produced
> models
>>>>>>>  almost always have an AED score near 0 so mixing est2genome with
> the
>>>>>>> AED_threshold with such limited protein support does create an
> artificial
>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>  How many contigs do you have in total and what is the N50 value
> for
>>>>>>> the
>>>>>>> assembly? If you have a large number of very short contigs, you will
>>>>>>>  get
>>>>>>> very inflated gene counts because you get genes split across contigs
>>>>>>>  and
>>>>>>> many contigs tend t be subtle rearrangements of other contigs just
> assembled in a slightly different way (so you can get bits and
> pieces
>>>>>>>  of
>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>  confounding
>>>>>>> factor if using the est2genome predictor with short ESTs.  I would
> recommend running CEGMA to get an estimate for the genome
>>>>>>>  completeness
>>>>>>> as
>>>>>>>  well as get an estimate of fragmentation as one of the statistics
>>>>>>> produced
>>>>>>>  is a percent of genes that are found complete (end to end) vs
> those
>>>>>>>  that
>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to be
> shorter
>>>>>>>  and less intron rich than other genes in the genome, so if CEGMA
> gives
>>>>>>>  a
>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>  pattern
>>>>>>> can be expected to be even more exaggerated for other genes in the
> genome.
>>>>>>>  If your genome is highly fragmented or proteins do not align well
> then
>>>>>>> there are other strategies.  For example, some vertebrate genomes
> end
>>>>>>>  up
>>>>>>> having extremely fragmented assemblies (on the order of 100,000
> contigs),
>>>>>>>  and if they are distantly related to other annotated species few
>>>>>>> proteins
>>>>>>>  may align to the contigs because the introns in the alignments
> tend
>>>>>>>  to
>>>>>>> be
>>>>>>>  so long and exons so short that it pushes down the significance
> scores
>>>>>>> too
>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
> only
>>>>>>>  way
>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Dear Carson and Daniel,
>>>>>>> Thanks. I ran sample file for filtering genes based on AED score.
> The
>>>>>>> input gff3 file was provided to option model_pred(see attached file
> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>  least
>>>>>>>  5
>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>  predicted
>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>> attached
>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>> just
>>>>>>> want
>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>> maker.
>>>>>>> On
>>>>>>>  the other hand, if you are trying to build a dataset for
> training
>>>>>>>  gene
>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>  dataset
>>>>>>> for
>>>>>>>  SNAP training.  There are a number of filters available. Just
> call
>>>>>>>  the
>>>>>>> script once without parameters to see the options.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>> wrote:
>>>>>>> Hi Parul,
>>>>>>> I think the way you described (with the maker_opts.ctl file) is
> how
>>>>>>> you
>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>> Daniel
>>>>>>> Daniel Ence
>>>>>>> Graduate Student
>>>>>>> Eccles Institute of Human Genetics
>>>>>>> University of Utah
>>>>>>> 15 North 2030 East, Room 2100
>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>> ________________________________________
>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>  Kudtarkar
>>>>>>> [parulk at caltech.edu]
>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>> To: Parul Kudtarkar
>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>> Also, are there any other parameters that are required when
> filtering
>>>>>>> based on AED score?
>>>>>>>  Hello Carson,
>>>>>>>  Just to confirm, Is there a script that would filter gene
> models
>>>>>>> at
>>>>>>> specific AED score.
>>>>>>>  Alternatively if I were to do this within maker with regards
> to
>>>>>>> parameters
>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>> genes
>>>>>>> gff3
>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>> Thanks and regards,
>>>>>>>  Parul Kudtarkar
>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
> 1
>>>>>>>  is
>>>>>>> worst
>>>>>>>  as
>>>>>>>  it is a distance metric.  You can use the AED_threshold
> parameter
>>>>>>> to
>>>>>>>  require better matching to the evidence by setting it closer
> to
>>>>>>> 0.
>>>>>>> You
>>>>>>>  can
>>>>>>>  also try to increase protein homology evidence as some of
> your
>>>>>>> calls
>>>>>>> may
>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>  --Carson
>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>> wrote:
>>>>>>> Dear Maker community,
>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>  based
>>>>>>> prediction, I use this data-set to train SNAP as well as Augustus
> predictions, followed by boot-strapping. I would typically expect
> 20-30K
>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>  indicating
>>>>>>>  too
>>>>>>> many false positives. Is there a way to further refine these
>>>>>>> predication/script to retain predictions with AED score 1 and if yes
>>>>>>> how
>>>>>>> to go about this?
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
> -l
>>>>>>> ab
>>>>>>> .o
>>>>>>> rg
>>>>>>>  --
>>>>>>>  Scientific Programmer
>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>  Beckman Institute,
>>>>>>>  California Institute of Technology
>>>>>>>  http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>> or
>>>>>>> g
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>> or
>>>>>>> g
>>>>>>>  _______________________________________________
>>>>>>>  maker-devel mailing list
>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
> .o
>>>>>>> rg
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
> 
> 
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
> 
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
> 
> 
> 


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From carsonhh at gmail.com  Fri Dec  7 09:27:22 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 07 Dec 2012 10:27:22 -0500
Subject: [maker-devel] AED score
In-Reply-To: <4347.131.215.15.234.1354834302.squirrel@webmail.caltech.edu>
Message-ID: <CCE77471.16E05%carsonhh@gmail.com>

Don't use keep_preds on any of your steps.  That should really only be
used for Fungi, Oomycetes, or some insect species.  Other genomes with
long introns and short exons like tend to overcall so you will get way to
many false positives.  I gave a more detailed explanation of what I would
do in my other e-mail.

--Carson

On 12-12-06 5:51 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Daniel,
>
>Once again thanks for extensive help. We get over estimation of number of
>genes at the end of step 2. So was wondering if there is a way to pick
>only the best annotated. That been said assembly, ESTs and proteins are
>not good and I am currently in process of running cegma.
>
>Also for step 2(ab-initio gene-prediction using SNAP and Augustus) is it
>best to turn off  keep_preds to remove any possible false-positives. Also
>should est2genome turned ON? Of course as pointed in previous email use
>est,proteins apart from training data to generate better gene-model and
>repeat masking as well to mask repeats for ab-initio predictors?
>I believe while running gff3_merge it is best to use option -g to get only
>the gene-predictions and filter evidence.
>
>Thanks and regards,
>Parul Kudtarkar
>
>> Hi Parul,
>> I dont' really have many suggestions for improving the gene models after
>> the annotation is done. Annotation is very dependent on the data you
>>have
>> at hand (the assembly, ESTs and proteins). One thing you could do to get
>> more annotations is to run something like iprscan on the ab-initio
>> predictions that didn't overlap any evidence and look for predictions
>>that
>> contain a pfam domain. Then you can send those predictions back through
>> maker and promote them to gene model status.
>>
>> Do you have the CEGMA results that Carson asked about? That really will
>> tell you what kind of annotation results you can expect. If the assembly
>> doesn't have an N50 greater than the expected median gene size, then you
>> can't expect very good results from automated annotation.
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: Parul Kudtarkar [parulk at caltech.edu]
>> Sent: Thursday, December 06, 2012 1:28 PM
>> To: Daniel Ence
>> Cc: maker-devel at yandell-lab.org
>> Subject: Re: [maker-devel] AED score
>>
>> Dear Daniel,
>>
>> Thanks for clearing doubts. For augustus I am using the closest
>> species(lamprey) to species we are annotating. For SNAP the training
>> set(hmm file) is generated using predictions made from evidence based
>> gene-predictions(sorry the file name was mis-leading). I think STEP 3-6
>> are not required(more or less repetitive without further improving
>> genemodel). Post Step 1(generating training data for SNAP using evidence
>> based prediction) and Step2(ab-initio gene-prediction using SNAP and
>> augustus) do you have recommendations for further improving the gene
>> model?
>>
>> Thanks and regards,
>> Parul Kudtarkar
>>
>>> Hi Parul,
>>>
>>> In step one, if protein2genome isn't turned on, then the protein
>>> alignments wont be used to generate gene models. Carson said before to
>>> use
>>> protein2genome to generate gene models for your trainings set, but you
>>> should know that those data aren't being used right now.
>>>
>>> In step 2, you can include the est and protein evidence that you used
>>>in
>>> step one, and the ab-initio predictors will takes those data as hints
>>>to
>>> guide their predictions. Also, are you reannotating human here? I'm
>>>just
>>> wondering why the snap file is called Pult, but the augustus species
>>> model
>>> is human. Also, I think you should include the same masking files from
>>> step 1, otherwise the ab-initio predictors will be predicting on the
>>> unmasked sequence which will give you many spurious predictions.
>>>
>>> In step 3, I'm not certain what you mean by boot-strapping. The control
>>> file you sent for step 3 will just pass-through all of the data from
>>> before.
>>>
>>> In step 4, I think what you'll get is pretty close to what you already
>>> had
>>> in step 3. The gene models from step 3 are already based on the est and
>>> protein data from step 1, so without giving any different evidence or
>>> ab-initio predictors, I think that you will just get the same gene
>>> models
>>> that you got from step 3. Those gene models are what you should be
>>>using
>>> to train snap. Also, is this the same genome as in the other steps? The
>>> genome file here is called genome.linear.fa, but before it was called
>>> genome.fa.
>>>
>>> Step 5. So maker uses both evidence and ab-initio predictions to create
>>> models. If you don't give any evidence (EST or protein) maker will not
>>> annotate any gene models. You have also changed the augustus species
>>> model
>>> in this step, but I don't know what you've gained by going from one
>>> species to another. You should be training augustus with the gene
>>>models
>>> and then creating a new species model in augustus. As I understand it,
>>> the
>>> filter only operates on gene models, not ab-initio predictions or
>>> alignments, so it probably isn't doing anything the way you have it
>>>set.
>>>
>>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>>> mean by boot-strapping here too.
>>>
>>> Hopefully that clears up some of the confusion with how maker works.
>>> Carson will probably have a lot of suggestions too.
>>>
>>> Thanks,
>>> Daniel
>>>
>>> Daniel Ence
>>> Graduate Student
>>> Eccles Institute of Human Genetics
>>> University of Utah
>>> 15 North 2030 East, Room 2100
>>> Salt Lake City, UT 84112-5330
>>> ________________________________________
>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>> Sent: Thursday, December 06, 2012 10:08 AM
>>> To: carsonhh at gmail.com
>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>> Subject: Re: [maker-devel] AED score
>>>
>>> Hi Carson,
>>>
>>> Once again thanks for a quick response. We expect to get 25,000 to
>>> 30,000
>>> genes.
>>> Here are the step
>>> Step1. EST and proteins are used to predict gene-models. the resulting
>>> file is used as training data-set for SNAP in step2. est2genome is
>>> turned
>>> ON
>>> Step2. Augustus and SNAP is used to predict genes.
>>> Step3. The results are re-annoated(boot-strap)
>>> Step4. EST and proteins are used to predict gene-models. The gff file
>>> from
>>> step3. is used as model_gff. The resulting file is used as training
>>> data-set for SNAP in step2
>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>>> contig_size to 10kb
>>>
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>
>>> I have attached the configuration file for each step.
>>>> Your output has no genes.  They've all been filtered out.  The gene
>>> predictions are left for reference purposes, but there are no gene
>>> models
>>>> in the file.  You need to look at the type columns in the GFF3 file
>>>>-->
>>> match/match_part features are evidence and reference data but not
>>> models.
>>>> All models will have types gene/mRNA/exon/CDS.  For example if you
>>>>just
>>> want gene models in your file you can use the gff3_merge script with
>>>the
>>> -g option, and it will only print out the gene models.
>>>> I think you may be misinterpreting what is happening at different
>>>> steps,
>>> as well as how to read the result files.  Could you give me a detailed
>>> explanation of what you expect to get back together with your control
>>> files and I can walk you through the configuration, and indicate what
>>>to
>>> expect.  Also what was the report like from CEGMA. Could you include
>>>the
>>> report file that shows how complete your genome is and how fragmented
>>>it
>>> is?
>>>> Thanks,
>>>> Carson
>>>> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>Dear Carson,
>>>>>Thanks for a quick response. keep_preds is set to 0
>>>>>Though for previous step(ab-intio gene predictions keep_preds was set
>>>>> to
>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>> Scaffold1_out.gff.
>>>>>Please advice.
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>> You should always get all predictions, but should only get models
>>> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>> keep_preds set.
>>>>>> Do you have keeps_preds set or gene models with AED values above
>>>>>>your
>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>case,
>>>>>> just set it to 0.  If the second one in the case, could you send me
>>> example GFF3?
>>>>>> Thanks,
>>>>>> Carson
>>>>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>Dear Carson,
>>>>>>>Thanks once again, we have limited experimental data with very short
>>>>>>> ESTs.
>>>>>>>CEGMA is useful for us to gauge our gene-model.
>>>>>>>On a different note to re-annotate genome(post evidence based
>>>>>>>prediction(used as training dataset)and abinitio gene-prediction).
>>> Here
>>>>>>>are the control parameters I am using with AED score set to 0.5,
>>>>>>> however
>>>>>>> I
>>>>>>>get predictions that includes the ones with AED score of 1.00 in
>>>>>>> resulting
>>>>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>> initial
>>>>>>>gff3 file.
>>>>>>>#-----Genome (Required for De-Novo Annotation)
>>>>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>> eukaryotic
>>>>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>>file
>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0
>>>>>>> =
>>> no
>>>>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 =
>>>>>>>no
>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>> no
>>>>>>>#-----MAKER Behavior Options
>>>>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound
>>>>>>>by
>>> 0
>>>>>>>and 1)
>>>>>>>Thanks and regards,
>>>>>>>Parul Kudtarkar
>>>>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>>partial
>>>>>>>>at
>>>>>>>> best.  You should seriously consider using mRNAseq to capture
>>>>>>>>those
>>> by
>>>>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>>>>trinity.
>>>>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
>>> size,
>>>>>>>>just
>>>>>>>> have maker skip them by setting the min_contig filter in the
>>> maker_opts.ctl file.
>>>>>>>> Thanks,
>>>>>>>> Carson
>>>>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
>>> N50
>>>>>>>>> of
>>>>>>>>>39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>reason
>>>>>>>>> when
>>>>>>>>>filtering based on AED score 0.75 there are no gene models
>>>>>>>>> predicted
>>> despite the model_gff file has few genes with scores less than 0.75?
>>> Thanks and regards,
>>>>>>>>>Parul Kudtarkar
>>>>>>>>>> There are certain characteristics that are apparent in this
>>> contig.
>>>>>>>>>First
>>>>>>>>>> it seems to be repeat rich with a very low gene density.  You
>>>>>>>>>> also
>>>>>>>>>>have
>>>>>>>>>very short ESTs, and because of the lengths you are probably
>>>>>>>>> getting
>>> many
>>>>>>>>>> of them to align spuriously which produces very short gene
>>>>>>>>>>models
>>> that
>>>>>>>>>are
>>>>>>>>>> more than likely false positives or at the very least just a
>>>>>>>>>> piece
>>>>>>>>>>of
>>>>>>>>>>a
>>>>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>>> unless
>>>>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>> protein
>>>>>>>>>alignments also seem to be few and far between.  You probably need
>>> to
>>>>>>>>>add
>>>>>>>>>> more proteins from a couple of related species, and you might
>>> consider
>>>>>>>>>using protein2genome rather than est2genome as a predictor if you
>>> are
>>>>>>>>>still working to generate a training set. Also est2genome produced
>>> models
>>>>>>>>>> almost always have an AED score near 0 so mixing est2genome with
>>> the
>>>>>>>>>AED_threshold with such limited protein support does create an
>>> artificial
>>>>>>>>>> bias to get back very short and incomplete models.
>>>>>>>>>> How many contigs do you have in total and what is the N50 value
>>> for
>>>>>>>>>>the
>>>>>>>>>assembly? If you have a large number of very short contigs, you
>>>>>>>>> will
>>>>>>>>> get
>>>>>>>>>very inflated gene counts because you get genes split across
>>>>>>>>> contigs
>>>>>>>>> and
>>>>>>>>>many contigs tend t be subtle rearrangements of other contigs just
>>> assembled in a slightly different way (so you can get bits and
>>> pieces
>>>>>>>>> of
>>>>>>>>>the same genes just rearranged).  This scenario is another
>>>>>>>>> confounding
>>>>>>>>>factor if using the est2genome predictor with short ESTs.  I would
>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>> completeness
>>>>>>>>>as
>>>>>>>>>> well as get an estimate of fragmentation as one of the
>>>>>>>>>>statistics
>>>>>>>>>produced
>>>>>>>>>> is a percent of genes that are found complete (end to end) vs
>>> those
>>>>>>>>>> that
>>>>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
>>> shorter
>>>>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
>>> gives
>>>>>>>>>> a
>>>>>>>>>high partial percentage and a low complete percentage, then this
>>>>>>>>> pattern
>>>>>>>>>can be expected to be even more exaggerated for other genes in the
>>> genome.
>>>>>>>>>> If your genome is highly fragmented or proteins do not align
>>>>>>>>>>well
>>> then
>>>>>>>>>there are other strategies.  For example, some vertebrate genomes
>>> end
>>>>>>>>> up
>>>>>>>>>having extremely fragmented assemblies (on the order of 100,000
>>> contigs),
>>>>>>>>>> and if they are distantly related to other annotated species few
>>>>>>>>>proteins
>>>>>>>>>> may align to the contigs because the introns in the alignments
>>> tend
>>>>>>>>>> to
>>>>>>>>>be
>>>>>>>>>> so long and exons so short that it pushes down the significance
>>> scores
>>>>>>>>>too
>>>>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
>>> only
>>>>>>>>>> way
>>>>>>>>>to get enough evidence to stitch gene models together.
>>>>>>>>>> Thanks,
>>>>>>>>>> Carson
>>>>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>>>Dear Carson and Daniel,
>>>>>>>>>>>Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>score.
>>> The
>>>>>>>>>input gff3 file was provided to option model_pred(see attached
>>>>>>>>>file
>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>> least
>>>>>>>>>>> 5
>>>>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>>>>> predicted
>>>>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>>>>attached
>>>>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>>>just
>>>>>>>>>>>>want
>>>>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>>>>maker.
>>>>>>>>>>>>On
>>>>>>>>>>>> the other hand, if you are trying to build a dataset for
>>> training
>>>>>>>>>>>> gene
>>>>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>>>>> dataset
>>>>>>>>>>>>for
>>>>>>>>>>>> SNAP training.  There are a number of filters available. Just
>>> call
>>>>>>>>>>>> the
>>>>>>>>>script once without parameters to see the options.
>>>>>>>>>>>> Thanks,
>>>>>>>>>>>> Carson
>>>>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>Hi Parul,
>>>>>>>>>>>>>I think the way you described (with the maker_opts.ctl file)
>>>>>>>>>>>>>is
>>> how
>>>>>>>>>you
>>>>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>>>>Daniel
>>>>>>>>>>>>>Daniel Ence
>>>>>>>>>>>>>Graduate Student
>>>>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>>>>University of Utah
>>>>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>>>>________________________________________
>>>>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>>> Kudtarkar
>>>>>>>>>[parulk at caltech.edu]
>>>>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>>>>Also, are there any other parameters that are required when
>>> filtering
>>>>>>>>>based on AED score?
>>>>>>>>>>>>>> Hello Carson,
>>>>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
>>> models
>>>>>>>>>>>>>>at
>>>>>>>>>specific AED score.
>>>>>>>>>>>>>> Alternatively if I were to do this within maker with regards
>>> to
>>>>>>>>>>>>>>parameters
>>>>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>>>genes
>>>>>>>>>>>>>>gff3
>>>>>>>>>>>>>> file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>>> threshold?
>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best
>>>>>>>>>>>>>>>and
>>> 1
>>>>>>>>>>>>>>> is
>>>>>>>>>worst
>>>>>>>>>>>>>>> as
>>>>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
>>> parameter
>>>>>>>>>to
>>>>>>>>>>>>>>> require better matching to the evidence by setting it
>>>>>>>>>>>>>>>closer
>>> to
>>>>>>>>>>>>>>>0.
>>>>>>>>>>>>>>>You
>>>>>>>>>>>>>>> can
>>>>>>>>>>>>>>> also try to increase protein homology evidence as some of
>>> your
>>>>>>>>>calls
>>>>>>>>>>>>>>>may
>>>>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>>>>> --Carson
>>>>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>>>> based
>>>>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
>>> predictions, followed by boot-strapping. I would typically expect
>>> 20-30K
>>>>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>>>> indicating
>>>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>>>many false positives. Is there a way to further refine
>>>>>>>>>>>>>>>>these
>>>>>>>>>predication/script to retain predictions with AED score 1 and if
>>>>>>>>> yes
>>>>>>>>>>>>>>>>how
>>>>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>>>>--
>>>>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yan
>>>>>>>>>>>>>>>>dell
>>> -l
>>>>>>>>>>>>>>>>ab
>>>>>>>>>>>>>>>>.o
>>>>>>>>>rg
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>>--
>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandel
>>>>>>>>>>>>>l-la
>>> b.
>>>>>>>>>>>>>or
>>>>>>>>>>>>>g
>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandel
>>>>>>>>>>>>>l-la
>>> b.
>>>>>>>>>>>>>or
>>>>>>>>>>>>>g
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-lab
>>> .o
>>>>>>>>>>>>rg
>>>>>>>>>>>--
>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>>
>>>
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>>
>>
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>
>
>_______________________________________________
>maker-devel mailing list
>maker-devel at box290.bluehost.com
>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org





From carsonhh at gmail.com  Fri Dec  7 09:47:39 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 07 Dec 2012 10:47:39 -0500
Subject: [maker-devel] AED score
In-Reply-To: <CCE77415.16E00%carsonhh@gmail.com>
Message-ID: <CCE77941.16E3D%carsonhh@gmail.com>

For step 2 and 3, use lamprey rather than human in augustus.  For some
reason the current version of augustus doesn't diplay it as an option for
the species help menu (so I didn't see it), but it's there in
?/augustus/config/species/lamprey

For any additional training, make copies into
?/augustus/config/species/lamprey2 and ?/augustus/config/species/lamprey3

Thanks,
Carson



From:  Carson Holt <carsonhh at gmail.com>
Date:  Friday, 7 December, 2012 10:22 AM
To:  Daniel Ence <dence at genetics.utah.edu>, "maker-devel at yandell-lab.org"
<maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
Subject:  Re: [maker-devel] AED score

Just to add to Daniels comments.

Things to change in step 1:
> protein= <just try and add more protein evidence in general>
> est2genome=0
> protein2genome=1
> split_hit=20000
> min_contig=50000

Reasoning:
> Your ESTs are very short especially if this is a lamprey species which have
> very long introns and really short exons.  In lamprey (i.e. Petromyzon
> marinus), genes tend to be very long (remember gene lengths include introns
> and UTR and is not just the size of the coding sequence), so contigs shorter
> than 50kb are useless for training as you are unlikely to get nice complete
> gene models on those.  Also lampreys have very long introns, so you have to
> allow for bigger introns in alignments (split_hit parameter).  Finally add as
> much protein evidence from as many sources as possible.  Your maker training
> run will take a long time as proteins take forever to align, but because of
> the evolutionary distance of lamprey from everything else and the short exon
> structure of its genome, very little aligns directly to its genome from other
> deuterstome and vertebrate species.  I'm assuming this is a lamprey species
> because of what you said about the  augustus species file you are using.
> Really the only thing closely related to lampreys unfortunately are other
> lampreys.  Lancelets, hagfish, and sharks are not closely related to lamprey
> (while they branch closely together on the tree of life, there are too many
> years since the last common ancestor).  So while they may have similar issues
> related to annotation (long introns and short exons etc.) they will not really
> match that well for the gene predictor or even protein alignments.

Additional note:
> I have training files for the lamprey species Petromyzon marinus for both
> Augustus and SNAP that I could share with you in a few week, when the genome
> publication is is released.  But before that happens, new gene models will be
> available  through the UCSC browser (hopefully within a couple of weeks), and
> gene models are already available through ENSEMBL.  Get those protein files
> for training, it may be a big help for you.  If you want early access to the
> lamprey training files for Augustus and SNAP, you would have to request it
> from Weiming Li at Michigan State University (the head of that genome
> project).
> 


Things to change in step 2:
> Optimally you would be doing de novo training using mRNAseq results, but with
> on;ly sparse protein alignments and such a fragmented assembly, you are
> probably better off just trying to adapt the human HMM files.  They won't
> match that well, but you probably won't have the evidence for De Novo
> training.  First make a copy of the augustus human species directory and
> rename it to lamprey (cp -R  ?/augustus/config/species/human
> ?/augustus/config/species/lamprey).  Use it as the base species for retraining
> augustus using your new models.  You will have to edit multiple files in the
> directory after you copy it so that they no longer say human or homo sapiens
> internally or in the file name.  Use maker2zff to generate the filtered ZFF
> file for training SNAP, but don't train SNAP.  Rather use the training file to
> better train Augustus info here (just ignore the CEGMA part) -->
> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
> 
> MAKE a backup of the step 1 maker output directory and run step 2 in the old
> step 1 directory (this allows you to change the parameters and reuse files
> form step 1 so you don't have to recalculate all the protein and EST
> alignments).  So control files for step 2 are identical to step 1 except for
> these parameters.
> 
> protein2genome=0
> augustus_species=lamprey
> snaphmm=lamprey.hmm #optional if you decide to use SNAP
> 
> Don't both training SNAP here as you probably won't have enough data and you
> assembly is too fragmented for it to work well, so just stick to augustus.
> Try SNAP if you want just to see how well it works.  Manually open up the
> largest contigs in a viewer to look at the models produced from the MAKER run
> to see if they look reasonable (this will also help you decide whether to keep
> SNAP).
> 

Things to change in step 3:
> Step 3 should just be a clone of step 2 as it is bootstrapping.  But make
> copies of ?/augustus/config/species/lamprey and save it to
> ?/augustus/config/species/lamprey2 (editing all the files and names as you did
> in step 2). This way you don't loose that training data if you decide to step
> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
> 
> augustus_species=lamprey2
> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
> 
> Make a backup of Step 2 and run step 3 in the old Step 2 directory (This is
> for file reuse, so the step will run fast).  This must be the exact same step
> directory as step 2 for the reuse trick to work.
> 
> Manually review the models and if you are satisfied move to step 4.  Also note
> that most parameters including the protein, EST, and repeats should not change
> from step1-step3, and should not be removed for step 4 either, you can add
> more evidence, but don't remove evidence (like the repeats).
> 
> 
Things to change in step 4:
> For this step, just set min_contig=10000 and rerun MAKER inside the step 3
> directory to get the smaller contigs annotated.  This should be your final
> step, although you can try altering other parameters or adding more evidence
> sources here etc.
> 
> 
For other things to keep in mind, you should consider taking extra time to
build a comprehensive library of repeats for your species, I know that
Petromyzon marinus was virtually unannotatable until we had a very deep
repeat library built for it.  Any repeat library should be used in all
steps.  Also for lamprey, you will expect between 20,000-30,000 genes both
because of your assemblies fragmentation and because of some ancestral
genome duplication.  Also be aware that lampreys appear to undergo
programmed genome loss in somatic tissues, so any gene count you get is only
going to represent a maximum of 75-80% of all genes unless the assembly is
derived from germline tissue.

Thanks,
Carson


> 
On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:

> Hi Parul, 
> 
> In step one, if protein2genome isn't turned on, then the protein alignments
> wont be used to generate gene models. Carson said before to use protein2genome
> to generate gene models for your trainings set, but you should know that those
> data aren't being used right now.
> 
> In step 2, you can include the est and protein evidence that you used in step
> one, and the ab-initio predictors will takes those data as hints to guide
> their predictions. Also, are you reannotating human here? I'm just wondering
> why the snap file is called Pult, but the augustus species model is human.
> Also, I think you should include the same masking files from step 1, otherwise
> the ab-initio predictors will be predicting on the unmasked sequence which
> will give you many spurious predictions.
> 
> In step 3, I'm not certain what you mean by boot-strapping. The control file
> you sent for step 3 will just pass-through all of the data from before.
> 
> In step 4, I think what you'll get is pretty close to what you already had in
> step 3. The gene models from step 3 are already based on the est and protein
> data from step 1, so without giving any different evidence or ab-initio
> predictors, I think that you will just get the same gene models that you got
> from step 3. Those gene models are what you should be using to train snap.
> Also, is this the same genome as in the other steps? The genome file here is
> called genome.linear.fa, but before it was called genome.fa.
> 
> Step 5. So maker uses both evidence and ab-initio predictions to create
> models. If you don't give any evidence (EST or protein) maker will not
> annotate any gene models. You have also changed the augustus species model in
> this step, but I don't know what you've gained by going from one species to
> another. You should be training augustus with the gene models and then
> creating a new species model in augustus. As I understand it, the filter only
> operates on gene models, not ab-initio predictions or alignments, so it
> probably isn't doing anything the way you have it set.
> 
> Step 6. I think step 5 and 6 should be combined. I don't know what you mean by
> boot-strapping here too.
> 
> Hopefully that clears up some of the confusion with how maker works. Carson
> will probably have a lot of suggestions too.
> 
> Thanks,
> Daniel 
> 
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 10:08 AM
> To: carsonhh at gmail.com
> Cc: Daniel Ence; maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
> 
> Hi Carson,
> 
> Once again thanks for a quick response. We expect to get 25,000 to 30,000
> genes.
> Here are the step
> Step1. EST and proteins are used to predict gene-models. the resulting
> file is used as training data-set for SNAP in step2. est2genome is turned
> ON
> Step2. Augustus and SNAP is used to predict genes.
> Step3. The results are re-annoated(boot-strap)
> Step4. EST and proteins are used to predict gene-models. The gff file from
> step3. is used as model_gff. The resulting file is used as training
> data-set for SNAP in step2
> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
> contig_size to 10kb
> 
> Thanks and regards,
> Parul Kudtarkar
> 
> I have attached the configuration file for each step.
>>  Your output has no genes.  They've all been filtered out.  The gene
> predictions are left for reference purposes, but there are no gene models
>>  in the file.  You need to look at the type columns in the GFF3 file -->
> match/match_part features are evidence and reference data but not
> models.
>>  All models will have types gene/mRNA/exon/CDS.  For example if you just
> want gene models in your file you can use the gff3_merge script with the
> -g option, and it will only print out the gene models.
>>  I think you may be misinterpreting what is happening at different steps,
> as well as how to read the result files.  Could you give me a detailed
> explanation of what you expect to get back together with your control
> files and I can walk you through the configuration, and indicate what to
> expect.  Also what was the report like from CEGMA. Could you include the
> report file that shows how complete your genome is and how fragmented it
> is?
>>  Thanks,
>>  Carson
>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>> Dear Carson,
>>> Thanks for a quick response. keep_preds is set to 0
>>> Though for previous step(ab-intio gene predictions keep_preds was set to
> 1, see Scaffold1_input.gff). I have also attached the output file
> Scaffold1_out.gff.
>>> Please advice.
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>>  You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>>>>  Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the
>>>> case,
>>>>  just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>>>>  Thanks,
>>>>  Carson
>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>> Dear Carson,
>>>>> Thanks once again, we have limited experimental data with very short
>>>>>  ESTs.
>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>> On a different note to re-annotate genome(post evidence based
>>>>> prediction(used as training dataset)and abinitio gene-prediction).
> Here
>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>  however
>>>>>  I
>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>  resulting
>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>  initial
>>>>> gff3 file.
>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>  eukaryotic
>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
> no
>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>  no
>>>>> #-----MAKER Behavior Options
>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
> 0
>>>>> and 1)
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>> partial
>>>>>> at
>>>>>>  best.  You should seriously consider using mRNAseq to capture those
> by
>>>>>>  using maker's est_gff option to pass in results from cufflinks or
>>>>>> trinity.
>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
> size,
>>>>>> just
>>>>>>  have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>>>>>>  Thanks,
>>>>>>  Carson
>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Thanks for the guidance Carson, total contig size is 330,611 with
> N50
>>>>>>>  of
>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>>  when
>>>>>>> filtering based on AED score 0.75 there are no gene models predicted
> despite the model_gff file has few genes with scores less than 0.75?
> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>  There are certain characteristics that are apparent in this
> contig.
>>>>>>> First
>>>>>>>  it seems to be repeat rich with a very low gene density.  You also
>>>>>>> have
>>>>>>> very short ESTs, and because of the lengths you are probably getting
> many
>>>>>>>  of them to align spuriously which produces very short gene models
> that
>>>>>>> are
>>>>>>>  more than likely false positives or at the very least just a piece
>>>>>>> of
>>>>>>> a
>>>>>>> gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>  unless
>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>  protein
>>>>>>> alignments also seem to be few and far between.  You probably need
> to
>>>>>>> add
>>>>>>>  more proteins from a couple of related species, and you might
> consider
>>>>>>> using protein2genome rather than est2genome as a predictor if you
> are
>>>>>>> still working to generate a training set. Also est2genome produced
> models
>>>>>>>  almost always have an AED score near 0 so mixing est2genome with
> the
>>>>>>> AED_threshold with such limited protein support does create an
> artificial
>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>  How many contigs do you have in total and what is the N50 value
> for
>>>>>>> the
>>>>>>> assembly? If you have a large number of very short contigs, you will
>>>>>>>  get
>>>>>>> very inflated gene counts because you get genes split across contigs
>>>>>>>  and
>>>>>>> many contigs tend t be subtle rearrangements of other contigs just
> assembled in a slightly different way (so you can get bits and
> pieces
>>>>>>>  of
>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>  confounding
>>>>>>> factor if using the est2genome predictor with short ESTs.  I would
> recommend running CEGMA to get an estimate for the genome
>>>>>>>  completeness
>>>>>>> as
>>>>>>>  well as get an estimate of fragmentation as one of the statistics
>>>>>>> produced
>>>>>>>  is a percent of genes that are found complete (end to end) vs
> those
>>>>>>>  that
>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to be
> shorter
>>>>>>>  and less intron rich than other genes in the genome, so if CEGMA
> gives
>>>>>>>  a
>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>  pattern
>>>>>>> can be expected to be even more exaggerated for other genes in the
> genome.
>>>>>>>  If your genome is highly fragmented or proteins do not align well
> then
>>>>>>> there are other strategies.  For example, some vertebrate genomes
> end
>>>>>>>  up
>>>>>>> having extremely fragmented assemblies (on the order of 100,000
> contigs),
>>>>>>>  and if they are distantly related to other annotated species few
>>>>>>> proteins
>>>>>>>  may align to the contigs because the introns in the alignments
> tend
>>>>>>>  to
>>>>>>> be
>>>>>>>  so long and exons so short that it pushes down the significance
> scores
>>>>>>> too
>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
> only
>>>>>>>  way
>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Dear Carson and Daniel,
>>>>>>> Thanks. I ran sample file for filtering genes based on AED score.
> The
>>>>>>> input gff3 file was provided to option model_pred(see attached file
> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>  least
>>>>>>>  5
>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>  predicted
>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>> attached
>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>> just
>>>>>>> want
>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>> maker.
>>>>>>> On
>>>>>>>  the other hand, if you are trying to build a dataset for
> training
>>>>>>>  gene
>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>  dataset
>>>>>>> for
>>>>>>>  SNAP training.  There are a number of filters available. Just
> call
>>>>>>>  the
>>>>>>> script once without parameters to see the options.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>> wrote:
>>>>>>> Hi Parul,
>>>>>>> I think the way you described (with the maker_opts.ctl file) is
> how
>>>>>>> you
>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>> Daniel
>>>>>>> Daniel Ence
>>>>>>> Graduate Student
>>>>>>> Eccles Institute of Human Genetics
>>>>>>> University of Utah
>>>>>>> 15 North 2030 East, Room 2100
>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>> ________________________________________
>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>  Kudtarkar
>>>>>>> [parulk at caltech.edu]
>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>> To: Parul Kudtarkar
>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>> Also, are there any other parameters that are required when
> filtering
>>>>>>> based on AED score?
>>>>>>>  Hello Carson,
>>>>>>>  Just to confirm, Is there a script that would filter gene
> models
>>>>>>> at
>>>>>>> specific AED score.
>>>>>>>  Alternatively if I were to do this within maker with regards
> to
>>>>>>> parameters
>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>> genes
>>>>>>> gff3
>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>> Thanks and regards,
>>>>>>>  Parul Kudtarkar
>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
> 1
>>>>>>>  is
>>>>>>> worst
>>>>>>>  as
>>>>>>>  it is a distance metric.  You can use the AED_threshold
> parameter
>>>>>>> to
>>>>>>>  require better matching to the evidence by setting it closer
> to
>>>>>>> 0.
>>>>>>> You
>>>>>>>  can
>>>>>>>  also try to increase protein homology evidence as some of
> your
>>>>>>> calls
>>>>>>> may
>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>  --Carson
>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>> wrote:
>>>>>>> Dear Maker community,
>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>  based
>>>>>>> prediction, I use this data-set to train SNAP as well as Augustus
> predictions, followed by boot-strapping. I would typically expect
> 20-30K
>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>  indicating
>>>>>>>  too
>>>>>>> many false positives. Is there a way to further refine these
>>>>>>> predication/script to retain predictions with AED score 1 and if yes
>>>>>>> how
>>>>>>> to go about this?
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
> -l
>>>>>>> ab
>>>>>>> .o
>>>>>>> rg
>>>>>>>  --
>>>>>>>  Scientific Programmer
>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>  Beckman Institute,
>>>>>>>  California Institute of Technology
>>>>>>>  http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>> or
>>>>>>> g
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>> or
>>>>>>> g
>>>>>>>  _______________________________________________
>>>>>>>  maker-devel mailing list
>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
> .o
>>>>>>> rg
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
> 
> 
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
> 
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
> 
> 
> 


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From parulk at caltech.edu  Fri Dec  7 16:06:26 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Fri, 7 Dec 2012 14:06:26 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCE77941.16E3D%carsonhh@gmail.com>
References: <CCE77941.16E3D%carsonhh@gmail.com>
Message-ID: <2974.131.215.15.234.1354917986.squirrel@webmail.caltech.edu>

Dear Carson,

Thanks for detailed explanation and help. Now we know the exact parameters
that should help us with generating good gene-model.

The genome for which we are working on gene predictions is
Echinoderm(sea-urchin). lamprey was the closest organism for training
augustus that I could find. A quick question for training augustus, there
is augustus_species option how would you go from training data generated
by zff2augustus_gbk.pl > train.gb as specified here
http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
generating the species folder that can be specified to augustus_species
option.

The average expected gene-length in our case is ~15kb.
We also have a good repeat library for our genome.

Thanks and regards,
Parul Kudtarkar

> For step 2 and 3, use lamprey rather than human in augustus.  For some
> reason the current version of augustus doesn't diplay it as an option for
> the species help menu (so I didn't see it), but it's there in
> ?/augustus/config/species/lamprey
>
> For any additional training, make copies into
> ?/augustus/config/species/lamprey2 and ?/augustus/config/species/lamprey3
>
> Thanks,
> Carson
>
>
>
> From:  Carson Holt <carsonhh at gmail.com>
> Date:  Friday, 7 December, 2012 10:22 AM
> To:  Daniel Ence <dence at genetics.utah.edu>, "maker-devel at yandell-lab.org"
> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
> Subject:  Re: [maker-devel] AED score
>
> Just to add to Daniels comments.
>
> Things to change in step 1:
>> protein= <just try and add more protein evidence in general>
>> est2genome=0
>> protein2genome=1
>> split_hit=20000
>> min_contig=50000
>
> Reasoning:
>> Your ESTs are very short especially if this is a lamprey species which
>> have
>> very long introns and really short exons.  In lamprey (i.e. Petromyzon
>> marinus), genes tend to be very long (remember gene lengths include
>> introns
>> and UTR and is not just the size of the coding sequence), so contigs
>> shorter
>> than 50kb are useless for training as you are unlikely to get nice
>> complete
>> gene models on those.  Also lampreys have very long introns, so you have
>> to
>> allow for bigger introns in alignments (split_hit parameter).  Finally
>> add as
>> much protein evidence from as many sources as possible.  Your maker
>> training
>> run will take a long time as proteins take forever to align, but because
>> of
>> the evolutionary distance of lamprey from everything else and the short
>> exon
>> structure of its genome, very little aligns directly to its genome from
>> other
>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>> species
>> because of what you said about the  augustus species file you are using.
>> Really the only thing closely related to lampreys unfortunately are
>> other
>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>> lamprey
>> (while they branch closely together on the tree of life, there are too
>> many
>> years since the last common ancestor).  So while they may have similar
>> issues
>> related to annotation (long introns and short exons etc.) they will not
>> really
>> match that well for the gene predictor or even protein alignments.
>
> Additional note:
>> I have training files for the lamprey species Petromyzon marinus for
>> both
>> Augustus and SNAP that I could share with you in a few week, when the
>> genome
>> publication is is released.  But before that happens, new gene models
>> will be
>> available  through the UCSC browser (hopefully within a couple of
>> weeks), and
>> gene models are already available through ENSEMBL.  Get those protein
>> files
>> for training, it may be a big help for you.  If you want early access to
>> the
>> lamprey training files for Augustus and SNAP, you would have to request
>> it
>> from Weiming Li at Michigan State University (the head of that genome
>> project).
>>
>
>
> Things to change in step 2:
>> Optimally you would be doing de novo training using mRNAseq results, but
>> with
>> on;ly sparse protein alignments and such a fragmented assembly, you are
>> probably better off just trying to adapt the human HMM files.  They
>> won't
>> match that well, but you probably won't have the evidence for De Novo
>> training.  First make a copy of the augustus human species directory and
>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>> ?/augustus/config/species/lamprey).  Use it as the base species for
>> retraining
>> augustus using your new models.  You will have to edit multiple files in
>> the
>> directory after you copy it so that they no longer say human or homo
>> sapiens
>> internally or in the file name.  Use maker2zff to generate the filtered
>> ZFF
>> file for training SNAP, but don't train SNAP.  Rather use the training
>> file to
>> better train Augustus info here (just ignore the CEGMA part) -->
>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>
>> MAKE a backup of the step 1 maker output directory and run step 2 in the
>> old
>> step 1 directory (this allows you to change the parameters and reuse
>> files
>> form step 1 so you don't have to recalculate all the protein and EST
>> alignments).  So control files for step 2 are identical to step 1 except
>> for
>> these parameters.
>>
>> protein2genome=0
>> augustus_species=lamprey
>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>
>> Don't both training SNAP here as you probably won't have enough data and
>> you
>> assembly is too fragmented for it to work well, so just stick to
>> augustus.
>> Try SNAP if you want just to see how well it works.  Manually open up
>> the
>> largest contigs in a viewer to look at the models produced from the
>> MAKER run
>> to see if they look reasonable (this will also help you decide whether
>> to keep
>> SNAP).
>>
>
> Things to change in step 3:
>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>> make
>> copies of ?/augustus/config/species/lamprey and save it to
>> ?/augustus/config/species/lamprey2 (editing all the files and names as
>> you did
>> in step 2). This way you don't loose that training data if you decide to
>> step
>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>
>> augustus_species=lamprey2
>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>
>> Make a backup of Step 2 and run step 3 in the old Step 2 directory (This
>> is
>> for file reuse, so the step will run fast).  This must be the exact same
>> step
>> directory as step 2 for the reuse trick to work.
>>
>> Manually review the models and if you are satisfied move to step 4.
>> Also note
>> that most parameters including the protein, EST, and repeats should not
>> change
>> from step1-step3, and should not be removed for step 4 either, you can
>> add
>> more evidence, but don't remove evidence (like the repeats).
>>
>>
> Things to change in step 4:
>> For this step, just set min_contig=10000 and rerun MAKER inside the step
>> 3
>> directory to get the smaller contigs annotated.  This should be your
>> final
>> step, although you can try altering other parameters or adding more
>> evidence
>> sources here etc.
>>
>>
> For other things to keep in mind, you should consider taking extra time to
> build a comprehensive library of repeats for your species, I know that
> Petromyzon marinus was virtually unannotatable until we had a very deep
> repeat library built for it.  Any repeat library should be used in all
> steps.  Also for lamprey, you will expect between 20,000-30,000 genes both
> because of your assemblies fragmentation and because of some ancestral
> genome duplication.  Also be aware that lampreys appear to undergo
> programmed genome loss in somatic tissues, so any gene count you get is
> only
> going to represent a maximum of 75-80% of all genes unless the assembly is
> derived from germline tissue.
>
> Thanks,
> Carson
>
>
>>
> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>
>> Hi Parul,
>>
>> In step one, if protein2genome isn't turned on, then the protein
>> alignments
>> wont be used to generate gene models. Carson said before to use
>> protein2genome
>> to generate gene models for your trainings set, but you should know that
>> those
>> data aren't being used right now.
>>
>> In step 2, you can include the est and protein evidence that you used in
>> step
>> one, and the ab-initio predictors will takes those data as hints to
>> guide
>> their predictions. Also, are you reannotating human here? I'm just
>> wondering
>> why the snap file is called Pult, but the augustus species model is
>> human.
>> Also, I think you should include the same masking files from step 1,
>> otherwise
>> the ab-initio predictors will be predicting on the unmasked sequence
>> which
>> will give you many spurious predictions.
>>
>> In step 3, I'm not certain what you mean by boot-strapping. The control
>> file
>> you sent for step 3 will just pass-through all of the data from before.
>>
>> In step 4, I think what you'll get is pretty close to what you already
>> had in
>> step 3. The gene models from step 3 are already based on the est and
>> protein
>> data from step 1, so without giving any different evidence or ab-initio
>> predictors, I think that you will just get the same gene models that you
>> got
>> from step 3. Those gene models are what you should be using to train
>> snap.
>> Also, is this the same genome as in the other steps? The genome file
>> here is
>> called genome.linear.fa, but before it was called genome.fa.
>>
>> Step 5. So maker uses both evidence and ab-initio predictions to create
>> models. If you don't give any evidence (EST or protein) maker will not
>> annotate any gene models. You have also changed the augustus species
>> model in
>> this step, but I don't know what you've gained by going from one species
>> to
>> another. You should be training augustus with the gene models and then
>> creating a new species model in augustus. As I understand it, the filter
>> only
>> operates on gene models, not ab-initio predictions or alignments, so it
>> probably isn't doing anything the way you have it set.
>>
>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>> mean by
>> boot-strapping here too.
>>
>> Hopefully that clears up some of the confusion with how maker works.
>> Carson
>> will probably have a lot of suggestions too.
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: Parul Kudtarkar [parulk at caltech.edu]
>> Sent: Thursday, December 06, 2012 10:08 AM
>> To: carsonhh at gmail.com
>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>> Subject: Re: [maker-devel] AED score
>>
>> Hi Carson,
>>
>> Once again thanks for a quick response. We expect to get 25,000 to
>> 30,000
>> genes.
>> Here are the step
>> Step1. EST and proteins are used to predict gene-models. the resulting
>> file is used as training data-set for SNAP in step2. est2genome is
>> turned
>> ON
>> Step2. Augustus and SNAP is used to predict genes.
>> Step3. The results are re-annoated(boot-strap)
>> Step4. EST and proteins are used to predict gene-models. The gff file
>> from
>> step3. is used as model_gff. The resulting file is used as training
>> data-set for SNAP in step2
>> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>> contig_size to 10kb
>>
>> Thanks and regards,
>> Parul Kudtarkar
>>
>> I have attached the configuration file for each step.
>>>  Your output has no genes.  They've all been filtered out.  The gene
>> predictions are left for reference purposes, but there are no gene
>> models
>>>  in the file.  You need to look at the type columns in the GFF3 file
>>> -->
>> match/match_part features are evidence and reference data but not
>> models.
>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>> just
>> want gene models in your file you can use the gff3_merge script with the
>> -g option, and it will only print out the gene models.
>>>  I think you may be misinterpreting what is happening at different
>>> steps,
>> as well as how to read the result files.  Could you give me a detailed
>> explanation of what you expect to get back together with your control
>> files and I can walk you through the configuration, and indicate what to
>> expect.  Also what was the report like from CEGMA. Could you include the
>> report file that shows how complete your genome is and how fragmented it
>> is?
>>>  Thanks,
>>>  Carson
>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>> Dear Carson,
>>>> Thanks for a quick response. keep_preds is set to 0
>>>> Though for previous step(ab-intio gene predictions keep_preds was set
>>>> to
>> 1, see Scaffold1_input.gff). I have also attached the output file
>> Scaffold1_out.gff.
>>>> Please advice.
>>>> Thanks and regards,
>>>> Parul Kudtarkar
>>>>>  You should always get all predictions, but should only get models
>> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>> keep_preds set.
>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>> your
>> threshold (not match/match_part features)?  If the first one is the
>>>>> case,
>>>>>  just set it to 0.  If the second one in the case, could you send me
>> example GFF3?
>>>>>  Thanks,
>>>>>  Carson
>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>> Dear Carson,
>>>>>> Thanks once again, we have limited experimental data with very short
>>>>>>  ESTs.
>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>> prediction(used as training dataset)and abinitio gene-prediction).
>> Here
>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>  however
>>>>>>  I
>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>  resulting
>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>  initial
>>>>>> gff3 file.
>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>  eukaryotic
>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>> file
>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0
>>>>>> =
>> no
>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 =
>>>>>> no
>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>  no
>>>>>> #-----MAKER Behavior Options
>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound
>>>>>> by
>> 0
>>>>>> and 1)
>>>>>> Thanks and regards,
>>>>>> Parul Kudtarkar
>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>> partial
>>>>>>> at
>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>> those
>> by
>>>>>>>  using maker's est_gff option to pass in results from cufflinks or
>>>>>>> trinity.
>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
>> size,
>>>>>>> just
>>>>>>>  have maker skip them by setting the min_contig filter in the
>> maker_opts.ctl file.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611 with
>> N50
>>>>>>>>  of
>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>> reason
>>>>>>>>  when
>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>> predicted
>> despite the model_gff file has few genes with scores less than 0.75?
>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>  There are certain characteristics that are apparent in this
>> contig.
>>>>>>>> First
>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>> also
>>>>>>>> have
>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>> getting
>> many
>>>>>>>>  of them to align spuriously which produces very short gene models
>> that
>>>>>>>> are
>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>> piece
>>>>>>>> of
>>>>>>>> a
>>>>>>>> gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>>  unless
>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>  protein
>>>>>>>> alignments also seem to be few and far between.  You probably need
>> to
>>>>>>>> add
>>>>>>>>  more proteins from a couple of related species, and you might
>> consider
>>>>>>>> using protein2genome rather than est2genome as a predictor if you
>> are
>>>>>>>> still working to generate a training set. Also est2genome produced
>> models
>>>>>>>>  almost always have an AED score near 0 so mixing est2genome with
>> the
>>>>>>>> AED_threshold with such limited protein support does create an
>> artificial
>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>  How many contigs do you have in total and what is the N50 value
>> for
>>>>>>>> the
>>>>>>>> assembly? If you have a large number of very short contigs, you
>>>>>>>> will
>>>>>>>>  get
>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>> contigs
>>>>>>>>  and
>>>>>>>> many contigs tend t be subtle rearrangements of other contigs just
>> assembled in a slightly different way (so you can get bits and
>> pieces
>>>>>>>>  of
>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>  confounding
>>>>>>>> factor if using the est2genome predictor with short ESTs.  I would
>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>  completeness
>>>>>>>> as
>>>>>>>>  well as get an estimate of fragmentation as one of the statistics
>>>>>>>> produced
>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>> those
>>>>>>>>  that
>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to be
>> shorter
>>>>>>>>  and less intron rich than other genes in the genome, so if CEGMA
>> gives
>>>>>>>>  a
>>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>>  pattern
>>>>>>>> can be expected to be even more exaggerated for other genes in the
>> genome.
>>>>>>>>  If your genome is highly fragmented or proteins do not align well
>> then
>>>>>>>> there are other strategies.  For example, some vertebrate genomes
>> end
>>>>>>>>  up
>>>>>>>> having extremely fragmented assemblies (on the order of 100,000
>> contigs),
>>>>>>>>  and if they are distantly related to other annotated species few
>>>>>>>> proteins
>>>>>>>>  may align to the contigs because the introns in the alignments
>> tend
>>>>>>>>  to
>>>>>>>> be
>>>>>>>>  so long and exons so short that it pushes down the significance
>> scores
>>>>>>>> too
>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
>> only
>>>>>>>>  way
>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>> Dear Carson and Daniel,
>>>>>>>> Thanks. I ran sample file for filtering genes based on AED score.
>> The
>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>> file
>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>  least
>>>>>>>>  5
>>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>>  predicted
>>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>>> attached
>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>> just
>>>>>>>> want
>>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>>> maker.
>>>>>>>> On
>>>>>>>>  the other hand, if you are trying to build a dataset for
>> training
>>>>>>>>  gene
>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>  dataset
>>>>>>>> for
>>>>>>>>  SNAP training.  There are a number of filters available. Just
>> call
>>>>>>>>  the
>>>>>>>> script once without parameters to see the options.
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>> wrote:
>>>>>>>> Hi Parul,
>>>>>>>> I think the way you described (with the maker_opts.ctl file) is
>> how
>>>>>>>> you
>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>> Daniel
>>>>>>>> Daniel Ence
>>>>>>>> Graduate Student
>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>> University of Utah
>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>> ________________________________________
>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>  Kudtarkar
>>>>>>>> [parulk at caltech.edu]
>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>> To: Parul Kudtarkar
>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>> Also, are there any other parameters that are required when
>> filtering
>>>>>>>> based on AED score?
>>>>>>>>  Hello Carson,
>>>>>>>>  Just to confirm, Is there a script that would filter gene
>> models
>>>>>>>> at
>>>>>>>> specific AED score.
>>>>>>>>  Alternatively if I were to do this within maker with regards
>> to
>>>>>>>> parameters
>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>> genes
>>>>>>>> gff3
>>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>> Thanks and regards,
>>>>>>>>  Parul Kudtarkar
>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>> 1
>>>>>>>>  is
>>>>>>>> worst
>>>>>>>>  as
>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>> parameter
>>>>>>>> to
>>>>>>>>  require better matching to the evidence by setting it closer
>> to
>>>>>>>> 0.
>>>>>>>> You
>>>>>>>>  can
>>>>>>>>  also try to increase protein homology evidence as some of
>> your
>>>>>>>> calls
>>>>>>>> may
>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>  --Carson
>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>> Dear Maker community,
>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>  based
>>>>>>>> prediction, I use this data-set to train SNAP as well as Augustus
>> predictions, followed by boot-strapping. I would typically expect
>> 20-30K
>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>  indicating
>>>>>>>>  too
>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>> predication/script to retain predictions with AED score 1 and if
>>>>>>>> yes
>>>>>>>> how
>>>>>>>> to go about this?
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>> _______________________________________________
>>>>>>>> maker-devel mailing list
>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>> -l
>>>>>>>> ab
>>>>>>>> .o
>>>>>>>> rg
>>>>>>>>  --
>>>>>>>>  Scientific Programmer
>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>  Beckman Institute,
>>>>>>>>  California Institute of Technology
>>>>>>>>  http://www.spbase.org
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>> _______________________________________________
>>>>>>>> maker-devel mailing list
>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>> b.
>>>>>>>> or
>>>>>>>> g
>>>>>>>> _______________________________________________
>>>>>>>> maker-devel mailing list
>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>> b.
>>>>>>>> or
>>>>>>>> g
>>>>>>>>  _______________________________________________
>>>>>>>>  maker-devel mailing list
>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>> .o
>>>>>>>> rg
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>> --
>>>> Scientific Programmer
>>>> Center for Computational Regulatory Genomics
>>>> Beckman Institute,
>>>> California Institute of Technology
>>>> http://www.spbase.org
>>
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>>
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From parulk at caltech.edu  Fri Dec  7 19:09:53 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Fri, 7 Dec 2012 17:09:53 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <2974.131.215.15.234.1354917989.squirrel@webmail.caltech.edu>
References: <CCE77941.16E3D%carsonhh@gmail.com>
	<2974.131.215.15.234.1354917989.squirrel@webmail.caltech.edu>
Message-ID: <2516.131.215.15.234.1354928993.squirrel@webmail.caltech.edu>

Sorry for not checking this before, just to answer my own question I just
found after reading augustus documentation that autoAugTrain.pl should
work for generating training dataset for Augustus from using the
gene-model hints from first pass run of maker and using
http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script to
generate training.gb

autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb

I believe should work better than using lamprey to train augustus.

Thanks and regards,
Parul Kudtarkar

> Dear Carson,
>
> Thanks for detailed explanation and help. Now we know the exact parameters
> that should help us with generating good gene-model.
>
> The genome for which we are working on gene predictions is
> Echinoderm(sea-urchin). lamprey was the closest organism for training
> augustus that I could find. A quick question for training augustus, there
> is augustus_species option how would you go from training data generated
> by zff2augustus_gbk.pl > train.gb as specified here
> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
> generating the species folder that can be specified to augustus_species
> option.
>
> The average expected gene-length in our case is ~15kb.
> We also have a good repeat library for our genome.
>
> Thanks and regards,
> Parul Kudtarkar
>
>> For step 2 and 3, use lamprey rather than human in augustus.  For some
>> reason the current version of augustus doesn't diplay it as an option
>> for
>> the species help menu (so I didn't see it), but it's there in
>> ?/augustus/config/species/lamprey
>>
>> For any additional training, make copies into
>> ?/augustus/config/species/lamprey2 and
>> ?/augustus/config/species/lamprey3
>>
>> Thanks,
>> Carson
>>
>>
>>
>> From:  Carson Holt <carsonhh at gmail.com>
>> Date:  Friday, 7 December, 2012 10:22 AM
>> To:  Daniel Ence <dence at genetics.utah.edu>,
>> "maker-devel at yandell-lab.org"
>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>> Subject:  Re: [maker-devel] AED score
>>
>> Just to add to Daniels comments.
>>
>> Things to change in step 1:
>>> protein= <just try and add more protein evidence in general>
>>> est2genome=0
>>> protein2genome=1
>>> split_hit=20000
>>> min_contig=50000
>>
>> Reasoning:
>>> Your ESTs are very short especially if this is a lamprey species which
>>> have
>>> very long introns and really short exons.  In lamprey (i.e. Petromyzon
>>> marinus), genes tend to be very long (remember gene lengths include
>>> introns
>>> and UTR and is not just the size of the coding sequence), so contigs
>>> shorter
>>> than 50kb are useless for training as you are unlikely to get nice
>>> complete
>>> gene models on those.  Also lampreys have very long introns, so you
>>> have
>>> to
>>> allow for bigger introns in alignments (split_hit parameter).  Finally
>>> add as
>>> much protein evidence from as many sources as possible.  Your maker
>>> training
>>> run will take a long time as proteins take forever to align, but
>>> because
>>> of
>>> the evolutionary distance of lamprey from everything else and the short
>>> exon
>>> structure of its genome, very little aligns directly to its genome from
>>> other
>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>> species
>>> because of what you said about the  augustus species file you are
>>> using.
>>> Really the only thing closely related to lampreys unfortunately are
>>> other
>>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>>> lamprey
>>> (while they branch closely together on the tree of life, there are too
>>> many
>>> years since the last common ancestor).  So while they may have similar
>>> issues
>>> related to annotation (long introns and short exons etc.) they will not
>>> really
>>> match that well for the gene predictor or even protein alignments.
>>
>> Additional note:
>>> I have training files for the lamprey species Petromyzon marinus for
>>> both
>>> Augustus and SNAP that I could share with you in a few week, when the
>>> genome
>>> publication is is released.  But before that happens, new gene models
>>> will be
>>> available  through the UCSC browser (hopefully within a couple of
>>> weeks), and
>>> gene models are already available through ENSEMBL.  Get those protein
>>> files
>>> for training, it may be a big help for you.  If you want early access
>>> to
>>> the
>>> lamprey training files for Augustus and SNAP, you would have to request
>>> it
>>> from Weiming Li at Michigan State University (the head of that genome
>>> project).
>>>
>>
>>
>> Things to change in step 2:
>>> Optimally you would be doing de novo training using mRNAseq results,
>>> but
>>> with
>>> on;ly sparse protein alignments and such a fragmented assembly, you are
>>> probably better off just trying to adapt the human HMM files.  They
>>> won't
>>> match that well, but you probably won't have the evidence for De Novo
>>> training.  First make a copy of the augustus human species directory
>>> and
>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>> retraining
>>> augustus using your new models.  You will have to edit multiple files
>>> in
>>> the
>>> directory after you copy it so that they no longer say human or homo
>>> sapiens
>>> internally or in the file name.  Use maker2zff to generate the filtered
>>> ZFF
>>> file for training SNAP, but don't train SNAP.  Rather use the training
>>> file to
>>> better train Augustus info here (just ignore the CEGMA part) -->
>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>
>>> MAKE a backup of the step 1 maker output directory and run step 2 in
>>> the
>>> old
>>> step 1 directory (this allows you to change the parameters and reuse
>>> files
>>> form step 1 so you don't have to recalculate all the protein and EST
>>> alignments).  So control files for step 2 are identical to step 1
>>> except
>>> for
>>> these parameters.
>>>
>>> protein2genome=0
>>> augustus_species=lamprey
>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>
>>> Don't both training SNAP here as you probably won't have enough data
>>> and
>>> you
>>> assembly is too fragmented for it to work well, so just stick to
>>> augustus.
>>> Try SNAP if you want just to see how well it works.  Manually open up
>>> the
>>> largest contigs in a viewer to look at the models produced from the
>>> MAKER run
>>> to see if they look reasonable (this will also help you decide whether
>>> to keep
>>> SNAP).
>>>
>>
>> Things to change in step 3:
>>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>>> make
>>> copies of ?/augustus/config/species/lamprey and save it to
>>> ?/augustus/config/species/lamprey2 (editing all the files and names as
>>> you did
>>> in step 2). This way you don't loose that training data if you decide
>>> to
>>> step
>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>
>>> augustus_species=lamprey2
>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>
>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>> (This
>>> is
>>> for file reuse, so the step will run fast).  This must be the exact
>>> same
>>> step
>>> directory as step 2 for the reuse trick to work.
>>>
>>> Manually review the models and if you are satisfied move to step 4.
>>> Also note
>>> that most parameters including the protein, EST, and repeats should not
>>> change
>>> from step1-step3, and should not be removed for step 4 either, you can
>>> add
>>> more evidence, but don't remove evidence (like the repeats).
>>>
>>>
>> Things to change in step 4:
>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>> step
>>> 3
>>> directory to get the smaller contigs annotated.  This should be your
>>> final
>>> step, although you can try altering other parameters or adding more
>>> evidence
>>> sources here etc.
>>>
>>>
>> For other things to keep in mind, you should consider taking extra time
>> to
>> build a comprehensive library of repeats for your species, I know that
>> Petromyzon marinus was virtually unannotatable until we had a very deep
>> repeat library built for it.  Any repeat library should be used in all
>> steps.  Also for lamprey, you will expect between 20,000-30,000 genes
>> both
>> because of your assemblies fragmentation and because of some ancestral
>> genome duplication.  Also be aware that lampreys appear to undergo
>> programmed genome loss in somatic tissues, so any gene count you get is
>> only
>> going to represent a maximum of 75-80% of all genes unless the assembly
>> is
>> derived from germline tissue.
>>
>> Thanks,
>> Carson
>>
>>
>>>
>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>
>>> Hi Parul,
>>>
>>> In step one, if protein2genome isn't turned on, then the protein
>>> alignments
>>> wont be used to generate gene models. Carson said before to use
>>> protein2genome
>>> to generate gene models for your trainings set, but you should know
>>> that
>>> those
>>> data aren't being used right now.
>>>
>>> In step 2, you can include the est and protein evidence that you used
>>> in
>>> step
>>> one, and the ab-initio predictors will takes those data as hints to
>>> guide
>>> their predictions. Also, are you reannotating human here? I'm just
>>> wondering
>>> why the snap file is called Pult, but the augustus species model is
>>> human.
>>> Also, I think you should include the same masking files from step 1,
>>> otherwise
>>> the ab-initio predictors will be predicting on the unmasked sequence
>>> which
>>> will give you many spurious predictions.
>>>
>>> In step 3, I'm not certain what you mean by boot-strapping. The control
>>> file
>>> you sent for step 3 will just pass-through all of the data from before.
>>>
>>> In step 4, I think what you'll get is pretty close to what you already
>>> had in
>>> step 3. The gene models from step 3 are already based on the est and
>>> protein
>>> data from step 1, so without giving any different evidence or ab-initio
>>> predictors, I think that you will just get the same gene models that
>>> you
>>> got
>>> from step 3. Those gene models are what you should be using to train
>>> snap.
>>> Also, is this the same genome as in the other steps? The genome file
>>> here is
>>> called genome.linear.fa, but before it was called genome.fa.
>>>
>>> Step 5. So maker uses both evidence and ab-initio predictions to create
>>> models. If you don't give any evidence (EST or protein) maker will not
>>> annotate any gene models. You have also changed the augustus species
>>> model in
>>> this step, but I don't know what you've gained by going from one
>>> species
>>> to
>>> another. You should be training augustus with the gene models and then
>>> creating a new species model in augustus. As I understand it, the
>>> filter
>>> only
>>> operates on gene models, not ab-initio predictions or alignments, so it
>>> probably isn't doing anything the way you have it set.
>>>
>>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>>> mean by
>>> boot-strapping here too.
>>>
>>> Hopefully that clears up some of the confusion with how maker works.
>>> Carson
>>> will probably have a lot of suggestions too.
>>>
>>> Thanks,
>>> Daniel
>>>
>>> Daniel Ence
>>> Graduate Student
>>> Eccles Institute of Human Genetics
>>> University of Utah
>>> 15 North 2030 East, Room 2100
>>> Salt Lake City, UT 84112-5330
>>> ________________________________________
>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>> Sent: Thursday, December 06, 2012 10:08 AM
>>> To: carsonhh at gmail.com
>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>> Subject: Re: [maker-devel] AED score
>>>
>>> Hi Carson,
>>>
>>> Once again thanks for a quick response. We expect to get 25,000 to
>>> 30,000
>>> genes.
>>> Here are the step
>>> Step1. EST and proteins are used to predict gene-models. the resulting
>>> file is used as training data-set for SNAP in step2. est2genome is
>>> turned
>>> ON
>>> Step2. Augustus and SNAP is used to predict genes.
>>> Step3. The results are re-annoated(boot-strap)
>>> Step4. EST and proteins are used to predict gene-models. The gff file
>>> from
>>> step3. is used as model_gff. The resulting file is used as training
>>> data-set for SNAP in step2
>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>>> contig_size to 10kb
>>>
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>
>>> I have attached the configuration file for each step.
>>>>  Your output has no genes.  They've all been filtered out.  The gene
>>> predictions are left for reference purposes, but there are no gene
>>> models
>>>>  in the file.  You need to look at the type columns in the GFF3 file
>>>> -->
>>> match/match_part features are evidence and reference data but not
>>> models.
>>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>>> just
>>> want gene models in your file you can use the gff3_merge script with
>>> the
>>> -g option, and it will only print out the gene models.
>>>>  I think you may be misinterpreting what is happening at different
>>>> steps,
>>> as well as how to read the result files.  Could you give me a detailed
>>> explanation of what you expect to get back together with your control
>>> files and I can walk you through the configuration, and indicate what
>>> to
>>> expect.  Also what was the report like from CEGMA. Could you include
>>> the
>>> report file that shows how complete your genome is and how fragmented
>>> it
>>> is?
>>>>  Thanks,
>>>>  Carson
>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>> Dear Carson,
>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>> Though for previous step(ab-intio gene predictions keep_preds was set
>>>>> to
>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>> Scaffold1_out.gff.
>>>>> Please advice.
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>>  You should always get all predictions, but should only get models
>>> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>> keep_preds set.
>>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>>> your
>>> threshold (not match/match_part features)?  If the first one is the
>>>>>> case,
>>>>>>  just set it to 0.  If the second one in the case, could you send me
>>> example GFF3?
>>>>>>  Thanks,
>>>>>>  Carson
>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Dear Carson,
>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>> short
>>>>>>>  ESTs.
>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>> prediction(used as training dataset)and abinitio gene-prediction).
>>> Here
>>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>>  however
>>>>>>>  I
>>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>>  resulting
>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>>  initial
>>>>>>> gff3 file.
>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>  eukaryotic
>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>> file
>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes,
>>>>>>> 0
>>>>>>> =
>>> no
>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 =
>>>>>>> no
>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>>  no
>>>>>>> #-----MAKER Behavior Options
>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound
>>>>>>> by
>>> 0
>>>>>>> and 1)
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>> partial
>>>>>>>> at
>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>> those
>>> by
>>>>>>>>  using maker's est_gff option to pass in results from cufflinks or
>>>>>>>> trinity.
>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
>>> size,
>>>>>>>> just
>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>> maker_opts.ctl file.
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611 with
>>> N50
>>>>>>>>>  of
>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>> reason
>>>>>>>>>  when
>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>> predicted
>>> despite the model_gff file has few genes with scores less than 0.75?
>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>  There are certain characteristics that are apparent in this
>>> contig.
>>>>>>>>> First
>>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>>> also
>>>>>>>>> have
>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>> getting
>>> many
>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>> models
>>> that
>>>>>>>>> are
>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>> piece
>>>>>>>>> of
>>>>>>>>> a
>>>>>>>>> gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>>>  unless
>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>>  protein
>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>> need
>>> to
>>>>>>>>> add
>>>>>>>>>  more proteins from a couple of related species, and you might
>>> consider
>>>>>>>>> using protein2genome rather than est2genome as a predictor if you
>>> are
>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>> produced
>>> models
>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome with
>>> the
>>>>>>>>> AED_threshold with such limited protein support does create an
>>> artificial
>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>  How many contigs do you have in total and what is the N50 value
>>> for
>>>>>>>>> the
>>>>>>>>> assembly? If you have a large number of very short contigs, you
>>>>>>>>> will
>>>>>>>>>  get
>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>> contigs
>>>>>>>>>  and
>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>> just
>>> assembled in a slightly different way (so you can get bits and
>>> pieces
>>>>>>>>>  of
>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>  confounding
>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>> would
>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>  completeness
>>>>>>>>> as
>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>> statistics
>>>>>>>>> produced
>>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>>> those
>>>>>>>>>  that
>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to
>>>>>>>>> be
>>> shorter
>>>>>>>>>  and less intron rich than other genes in the genome, so if CEGMA
>>> gives
>>>>>>>>>  a
>>>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>>>  pattern
>>>>>>>>> can be expected to be even more exaggerated for other genes in
>>>>>>>>> the
>>> genome.
>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>> well
>>> then
>>>>>>>>> there are other strategies.  For example, some vertebrate genomes
>>> end
>>>>>>>>>  up
>>>>>>>>> having extremely fragmented assemblies (on the order of 100,000
>>> contigs),
>>>>>>>>>  and if they are distantly related to other annotated species few
>>>>>>>>> proteins
>>>>>>>>>  may align to the contigs because the introns in the alignments
>>> tend
>>>>>>>>>  to
>>>>>>>>> be
>>>>>>>>>  so long and exons so short that it pushes down the significance
>>> scores
>>>>>>>>> too
>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
>>> only
>>>>>>>>>  way
>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED score.
>>> The
>>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>>> file
>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>  least
>>>>>>>>>  5
>>>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>>>  predicted
>>>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>>>> attached
>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>> just
>>>>>>>>> want
>>>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>>>> maker.
>>>>>>>>> On
>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>> training
>>>>>>>>>  gene
>>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>>  dataset
>>>>>>>>> for
>>>>>>>>>  SNAP training.  There are a number of filters available. Just
>>> call
>>>>>>>>>  the
>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>> wrote:
>>>>>>>>> Hi Parul,
>>>>>>>>> I think the way you described (with the maker_opts.ctl file) is
>>> how
>>>>>>>>> you
>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>> Daniel
>>>>>>>>> Daniel Ence
>>>>>>>>> Graduate Student
>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>> University of Utah
>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>> ________________________________________
>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>  Kudtarkar
>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>> Also, are there any other parameters that are required when
>>> filtering
>>>>>>>>> based on AED score?
>>>>>>>>>  Hello Carson,
>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>> models
>>>>>>>>> at
>>>>>>>>> specific AED score.
>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>> to
>>>>>>>>> parameters
>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>> genes
>>>>>>>>> gff3
>>>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>>> Thanks and regards,
>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>> 1
>>>>>>>>>  is
>>>>>>>>> worst
>>>>>>>>>  as
>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>> parameter
>>>>>>>>> to
>>>>>>>>>  require better matching to the evidence by setting it closer
>>> to
>>>>>>>>> 0.
>>>>>>>>> You
>>>>>>>>>  can
>>>>>>>>>  also try to increase protein homology evidence as some of
>>> your
>>>>>>>>> calls
>>>>>>>>> may
>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>  --Carson
>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>> Dear Maker community,
>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>  based
>>>>>>>>> prediction, I use this data-set to train SNAP as well as Augustus
>>> predictions, followed by boot-strapping. I would typically expect
>>> 20-30K
>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>  indicating
>>>>>>>>>  too
>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>> predication/script to retain predictions with AED score 1 and if
>>>>>>>>> yes
>>>>>>>>> how
>>>>>>>>> to go about this?
>>>>>>>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>> -l
>>>>>>>>> ab
>>>>>>>>> .o
>>>>>>>>> rg
>>>>>>>>>  --
>>>>>>>>>  Scientific Programmer
>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>  Beckman Institute,
>>>>>>>>>  California Institute of Technology
>>>>>>>>>  http://www.spbase.org
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>>> b.
>>>>>>>>> or
>>>>>>>>> g
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>>> b.
>>>>>>>>> or
>>>>>>>>> g
>>>>>>>>>  _______________________________________________
>>>>>>>>>  maker-devel mailing list
>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>>> .o
>>>>>>>>> rg
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>>
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>>
>>>
>>
>>
>>
>
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From carsonhh at gmail.com  Fri Dec  7 19:23:18 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 07 Dec 2012 20:23:18 -0500
Subject: [maker-devel] AED score
In-Reply-To: <2516.131.215.15.234.1354928993.squirrel@webmail.caltech.edu>
Message-ID: <CCE7FF16.16F0A%carsonhh@gmail.com>

Yes.  Lamprey is not a good match for sea urchin.  When training Augusuts
you can sometimes use other genomes as starting points and let Augustus
then modify that species to match the models you provided, which can be
better than de novo training under certain circumstances. But given sea
urchin's evolutionary distance from all the other species bundled with
augustus, its probably not a good starting point.  So protein2genome
derived models and cegma based training are probably your best options.

--Carson


On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Sorry for not checking this before, just to answer my own question I just
>found after reading augustus documentation that autoAugTrain.pl should
>work for generating training dataset for Augustus from using the
>gene-model hints from first pass run of maker and using
>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script to
>generate training.gb
>
>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>
>I believe should work better than using lamprey to train augustus.
>
>Thanks and regards,
>Parul Kudtarkar
>
>> Dear Carson,
>>
>> Thanks for detailed explanation and help. Now we know the exact
>>parameters
>> that should help us with generating good gene-model.
>>
>> The genome for which we are working on gene predictions is
>> Echinoderm(sea-urchin). lamprey was the closest organism for training
>> augustus that I could find. A quick question for training augustus,
>>there
>> is augustus_species option how would you go from training data generated
>> by zff2augustus_gbk.pl > train.gb as specified here
>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>> generating the species folder that can be specified to augustus_species
>> option.
>>
>> The average expected gene-length in our case is ~15kb.
>> We also have a good repeat library for our genome.
>>
>> Thanks and regards,
>> Parul Kudtarkar
>>
>>> For step 2 and 3, use lamprey rather than human in augustus.  For some
>>> reason the current version of augustus doesn't diplay it as an option
>>> for
>>> the species help menu (so I didn't see it), but it's there in
>>> ?/augustus/config/species/lamprey
>>>
>>> For any additional training, make copies into
>>> ?/augustus/config/species/lamprey2 and
>>> ?/augustus/config/species/lamprey3
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>
>>> From:  Carson Holt <carsonhh at gmail.com>
>>> Date:  Friday, 7 December, 2012 10:22 AM
>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>> "maker-devel at yandell-lab.org"
>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>> Subject:  Re: [maker-devel] AED score
>>>
>>> Just to add to Daniels comments.
>>>
>>> Things to change in step 1:
>>>> protein= <just try and add more protein evidence in general>
>>>> est2genome=0
>>>> protein2genome=1
>>>> split_hit=20000
>>>> min_contig=50000
>>>
>>> Reasoning:
>>>> Your ESTs are very short especially if this is a lamprey species which
>>>> have
>>>> very long introns and really short exons.  In lamprey (i.e. Petromyzon
>>>> marinus), genes tend to be very long (remember gene lengths include
>>>> introns
>>>> and UTR and is not just the size of the coding sequence), so contigs
>>>> shorter
>>>> than 50kb are useless for training as you are unlikely to get nice
>>>> complete
>>>> gene models on those.  Also lampreys have very long introns, so you
>>>> have
>>>> to
>>>> allow for bigger introns in alignments (split_hit parameter).  Finally
>>>> add as
>>>> much protein evidence from as many sources as possible.  Your maker
>>>> training
>>>> run will take a long time as proteins take forever to align, but
>>>> because
>>>> of
>>>> the evolutionary distance of lamprey from everything else and the
>>>>short
>>>> exon
>>>> structure of its genome, very little aligns directly to its genome
>>>>from
>>>> other
>>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>>> species
>>>> because of what you said about the  augustus species file you are
>>>> using.
>>>> Really the only thing closely related to lampreys unfortunately are
>>>> other
>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>>>> lamprey
>>>> (while they branch closely together on the tree of life, there are too
>>>> many
>>>> years since the last common ancestor).  So while they may have similar
>>>> issues
>>>> related to annotation (long introns and short exons etc.) they will
>>>>not
>>>> really
>>>> match that well for the gene predictor or even protein alignments.
>>>
>>> Additional note:
>>>> I have training files for the lamprey species Petromyzon marinus for
>>>> both
>>>> Augustus and SNAP that I could share with you in a few week, when the
>>>> genome
>>>> publication is is released.  But before that happens, new gene models
>>>> will be
>>>> available  through the UCSC browser (hopefully within a couple of
>>>> weeks), and
>>>> gene models are already available through ENSEMBL.  Get those protein
>>>> files
>>>> for training, it may be a big help for you.  If you want early access
>>>> to
>>>> the
>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>request
>>>> it
>>>> from Weiming Li at Michigan State University (the head of that genome
>>>> project).
>>>>
>>>
>>>
>>> Things to change in step 2:
>>>> Optimally you would be doing de novo training using mRNAseq results,
>>>> but
>>>> with
>>>> on;ly sparse protein alignments and such a fragmented assembly, you
>>>>are
>>>> probably better off just trying to adapt the human HMM files.  They
>>>> won't
>>>> match that well, but you probably won't have the evidence for De Novo
>>>> training.  First make a copy of the augustus human species directory
>>>> and
>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>>> retraining
>>>> augustus using your new models.  You will have to edit multiple files
>>>> in
>>>> the
>>>> directory after you copy it so that they no longer say human or homo
>>>> sapiens
>>>> internally or in the file name.  Use maker2zff to generate the
>>>>filtered
>>>> ZFF
>>>> file for training SNAP, but don't train SNAP.  Rather use the training
>>>> file to
>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>
>>>> MAKE a backup of the step 1 maker output directory and run step 2 in
>>>> the
>>>> old
>>>> step 1 directory (this allows you to change the parameters and reuse
>>>> files
>>>> form step 1 so you don't have to recalculate all the protein and EST
>>>> alignments).  So control files for step 2 are identical to step 1
>>>> except
>>>> for
>>>> these parameters.
>>>>
>>>> protein2genome=0
>>>> augustus_species=lamprey
>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>
>>>> Don't both training SNAP here as you probably won't have enough data
>>>> and
>>>> you
>>>> assembly is too fragmented for it to work well, so just stick to
>>>> augustus.
>>>> Try SNAP if you want just to see how well it works.  Manually open up
>>>> the
>>>> largest contigs in a viewer to look at the models produced from the
>>>> MAKER run
>>>> to see if they look reasonable (this will also help you decide whether
>>>> to keep
>>>> SNAP).
>>>>
>>>
>>> Things to change in step 3:
>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>>>> make
>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>> ?/augustus/config/species/lamprey2 (editing all the files and names as
>>>> you did
>>>> in step 2). This way you don't loose that training data if you decide
>>>> to
>>>> step
>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>
>>>> augustus_species=lamprey2
>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>
>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>> (This
>>>> is
>>>> for file reuse, so the step will run fast).  This must be the exact
>>>> same
>>>> step
>>>> directory as step 2 for the reuse trick to work.
>>>>
>>>> Manually review the models and if you are satisfied move to step 4.
>>>> Also note
>>>> that most parameters including the protein, EST, and repeats should
>>>>not
>>>> change
>>>> from step1-step3, and should not be removed for step 4 either, you can
>>>> add
>>>> more evidence, but don't remove evidence (like the repeats).
>>>>
>>>>
>>> Things to change in step 4:
>>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>>> step
>>>> 3
>>>> directory to get the smaller contigs annotated.  This should be your
>>>> final
>>>> step, although you can try altering other parameters or adding more
>>>> evidence
>>>> sources here etc.
>>>>
>>>>
>>> For other things to keep in mind, you should consider taking extra time
>>> to
>>> build a comprehensive library of repeats for your species, I know that
>>> Petromyzon marinus was virtually unannotatable until we had a very deep
>>> repeat library built for it.  Any repeat library should be used in all
>>> steps.  Also for lamprey, you will expect between 20,000-30,000 genes
>>> both
>>> because of your assemblies fragmentation and because of some ancestral
>>> genome duplication.  Also be aware that lampreys appear to undergo
>>> programmed genome loss in somatic tissues, so any gene count you get is
>>> only
>>> going to represent a maximum of 75-80% of all genes unless the assembly
>>> is
>>> derived from germline tissue.
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>>
>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>
>>>> Hi Parul,
>>>>
>>>> In step one, if protein2genome isn't turned on, then the protein
>>>> alignments
>>>> wont be used to generate gene models. Carson said before to use
>>>> protein2genome
>>>> to generate gene models for your trainings set, but you should know
>>>> that
>>>> those
>>>> data aren't being used right now.
>>>>
>>>> In step 2, you can include the est and protein evidence that you used
>>>> in
>>>> step
>>>> one, and the ab-initio predictors will takes those data as hints to
>>>> guide
>>>> their predictions. Also, are you reannotating human here? I'm just
>>>> wondering
>>>> why the snap file is called Pult, but the augustus species model is
>>>> human.
>>>> Also, I think you should include the same masking files from step 1,
>>>> otherwise
>>>> the ab-initio predictors will be predicting on the unmasked sequence
>>>> which
>>>> will give you many spurious predictions.
>>>>
>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>control
>>>> file
>>>> you sent for step 3 will just pass-through all of the data from
>>>>before.
>>>>
>>>> In step 4, I think what you'll get is pretty close to what you already
>>>> had in
>>>> step 3. The gene models from step 3 are already based on the est and
>>>> protein
>>>> data from step 1, so without giving any different evidence or
>>>>ab-initio
>>>> predictors, I think that you will just get the same gene models that
>>>> you
>>>> got
>>>> from step 3. Those gene models are what you should be using to train
>>>> snap.
>>>> Also, is this the same genome as in the other steps? The genome file
>>>> here is
>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>
>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>create
>>>> models. If you don't give any evidence (EST or protein) maker will not
>>>> annotate any gene models. You have also changed the augustus species
>>>> model in
>>>> this step, but I don't know what you've gained by going from one
>>>> species
>>>> to
>>>> another. You should be training augustus with the gene models and then
>>>> creating a new species model in augustus. As I understand it, the
>>>> filter
>>>> only
>>>> operates on gene models, not ab-initio predictions or alignments, so
>>>>it
>>>> probably isn't doing anything the way you have it set.
>>>>
>>>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>>>> mean by
>>>> boot-strapping here too.
>>>>
>>>> Hopefully that clears up some of the confusion with how maker works.
>>>> Carson
>>>> will probably have a lot of suggestions too.
>>>>
>>>> Thanks,
>>>> Daniel
>>>>
>>>> Daniel Ence
>>>> Graduate Student
>>>> Eccles Institute of Human Genetics
>>>> University of Utah
>>>> 15 North 2030 East, Room 2100
>>>> Salt Lake City, UT 84112-5330
>>>> ________________________________________
>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>> To: carsonhh at gmail.com
>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>> Subject: Re: [maker-devel] AED score
>>>>
>>>> Hi Carson,
>>>>
>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>> 30,000
>>>> genes.
>>>> Here are the step
>>>> Step1. EST and proteins are used to predict gene-models. the resulting
>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>> turned
>>>> ON
>>>> Step2. Augustus and SNAP is used to predict genes.
>>>> Step3. The results are re-annoated(boot-strap)
>>>> Step4. EST and proteins are used to predict gene-models. The gff file
>>>> from
>>>> step3. is used as model_gff. The resulting file is used as training
>>>> data-set for SNAP in step2
>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to
>>>>0.5
>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>>>> contig_size to 10kb
>>>>
>>>> Thanks and regards,
>>>> Parul Kudtarkar
>>>>
>>>> I have attached the configuration file for each step.
>>>>>  Your output has no genes.  They've all been filtered out.  The gene
>>>> predictions are left for reference purposes, but there are no gene
>>>> models
>>>>>  in the file.  You need to look at the type columns in the GFF3 file
>>>>> -->
>>>> match/match_part features are evidence and reference data but not
>>>> models.
>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>>>> just
>>>> want gene models in your file you can use the gff3_merge script with
>>>> the
>>>> -g option, and it will only print out the gene models.
>>>>>  I think you may be misinterpreting what is happening at different
>>>>> steps,
>>>> as well as how to read the result files.  Could you give me a detailed
>>>> explanation of what you expect to get back together with your control
>>>> files and I can walk you through the configuration, and indicate what
>>>> to
>>>> expect.  Also what was the report like from CEGMA. Could you include
>>>> the
>>>> report file that shows how complete your genome is and how fragmented
>>>> it
>>>> is?
>>>>>  Thanks,
>>>>>  Carson
>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>> Dear Carson,
>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>> Though for previous step(ab-intio gene predictions keep_preds was
>>>>>>set
>>>>>> to
>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>> Scaffold1_out.gff.
>>>>>> Please advice.
>>>>>> Thanks and regards,
>>>>>> Parul Kudtarkar
>>>>>>>  You should always get all predictions, but should only get models
>>>> (match/match_part) with AED scores less than 0.5.  You should never
>>>>get
>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>>> keep_preds set.
>>>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>>>> your
>>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>> case,
>>>>>>>  just set it to 0.  If the second one in the case, could you send
>>>>>>>me
>>>> example GFF3?
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>> Dear Carson,
>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>> short
>>>>>>>>  ESTs.
>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>> prediction(used as training dataset)and abinitio gene-prediction).
>>>> Here
>>>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>>>  however
>>>>>>>>  I
>>>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>>>  resulting
>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>>>  initial
>>>>>>>> gff3 file.
>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>>  eukaryotic
>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>>> file
>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes,
>>>>>>>> 0
>>>>>>>> =
>>>> no
>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 =
>>>>>>>> no
>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>>>  no
>>>>>>>> #-----MAKER Behavior Options
>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound
>>>>>>>> by
>>>> 0
>>>>>>>> and 1)
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>>> partial
>>>>>>>>> at
>>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>>> those
>>>> by
>>>>>>>>>  using maker's est_gff option to pass in results from cufflinks
>>>>>>>>>or
>>>>>>>>> trinity.
>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
>>>> size,
>>>>>>>>> just
>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>> maker_opts.ctl file.
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>with
>>>> N50
>>>>>>>>>>  of
>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>> reason
>>>>>>>>>>  when
>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>> predicted
>>>> despite the model_gff file has few genes with scores less than 0.75?
>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>> contig.
>>>>>>>>>> First
>>>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>>>> also
>>>>>>>>>> have
>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>> getting
>>>> many
>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>> models
>>>> that
>>>>>>>>>> are
>>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>>> piece
>>>>>>>>>> of
>>>>>>>>>> a
>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>reason
>>>>>>>>>>  unless
>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>>>  protein
>>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>>> need
>>>> to
>>>>>>>>>> add
>>>>>>>>>>  more proteins from a couple of related species, and you might
>>>> consider
>>>>>>>>>> using protein2genome rather than est2genome as a predictor if
>>>>>>>>>>you
>>>> are
>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>> produced
>>>> models
>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>with
>>>> the
>>>>>>>>>> AED_threshold with such limited protein support does create an
>>>> artificial
>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>  How many contigs do you have in total and what is the N50 value
>>>> for
>>>>>>>>>> the
>>>>>>>>>> assembly? If you have a large number of very short contigs, you
>>>>>>>>>> will
>>>>>>>>>>  get
>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>> contigs
>>>>>>>>>>  and
>>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>>> just
>>>> assembled in a slightly different way (so you can get bits and
>>>> pieces
>>>>>>>>>>  of
>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>  confounding
>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>> would
>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>  completeness
>>>>>>>>>> as
>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>> statistics
>>>>>>>>>> produced
>>>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>>>> those
>>>>>>>>>>  that
>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to
>>>>>>>>>> be
>>>> shorter
>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>CEGMA
>>>> gives
>>>>>>>>>>  a
>>>>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>>>>  pattern
>>>>>>>>>> can be expected to be even more exaggerated for other genes in
>>>>>>>>>> the
>>>> genome.
>>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>>> well
>>>> then
>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>genomes
>>>> end
>>>>>>>>>>  up
>>>>>>>>>> having extremely fragmented assemblies (on the order of 100,000
>>>> contigs),
>>>>>>>>>>  and if they are distantly related to other annotated species
>>>>>>>>>>few
>>>>>>>>>> proteins
>>>>>>>>>>  may align to the contigs because the introns in the alignments
>>>> tend
>>>>>>>>>>  to
>>>>>>>>>> be
>>>>>>>>>>  so long and exons so short that it pushes down the significance
>>>> scores
>>>>>>>>>> too
>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
>>>> only
>>>>>>>>>>  way
>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>  Thanks,
>>>>>>>>>>  Carson
>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>score.
>>>> The
>>>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>>>> file
>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>  least
>>>>>>>>>>  5
>>>>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>>>>  predicted
>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>>>>> attached
>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>> just
>>>>>>>>>> want
>>>>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>>>>> maker.
>>>>>>>>>> On
>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>> training
>>>>>>>>>>  gene
>>>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>>>  dataset
>>>>>>>>>> for
>>>>>>>>>>  SNAP training.  There are a number of filters available. Just
>>>> call
>>>>>>>>>>  the
>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>  Thanks,
>>>>>>>>>>  Carson
>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>> wrote:
>>>>>>>>>> Hi Parul,
>>>>>>>>>> I think the way you described (with the maker_opts.ctl file) is
>>>> how
>>>>>>>>>> you
>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>> Daniel
>>>>>>>>>> Daniel Ence
>>>>>>>>>> Graduate Student
>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>> University of Utah
>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>> ________________________________________
>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>  Kudtarkar
>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>> Also, are there any other parameters that are required when
>>>> filtering
>>>>>>>>>> based on AED score?
>>>>>>>>>>  Hello Carson,
>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>> models
>>>>>>>>>> at
>>>>>>>>>> specific AED score.
>>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>>> to
>>>>>>>>>> parameters
>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>> genes
>>>>>>>>>> gff3
>>>>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>>>> Thanks and regards,
>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>>> 1
>>>>>>>>>>  is
>>>>>>>>>> worst
>>>>>>>>>>  as
>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>> parameter
>>>>>>>>>> to
>>>>>>>>>>  require better matching to the evidence by setting it closer
>>>> to
>>>>>>>>>> 0.
>>>>>>>>>> You
>>>>>>>>>>  can
>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>> your
>>>>>>>>>> calls
>>>>>>>>>> may
>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>  --Carson
>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>> Dear Maker community,
>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>  based
>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>Augustus
>>>> predictions, followed by boot-strapping. I would typically expect
>>>> 20-30K
>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>  indicating
>>>>>>>>>>  too
>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>> predication/script to retain predictions with AED score 1 and if
>>>>>>>>>> yes
>>>>>>>>>> how
>>>>>>>>>> to go about this?
>>>>>>>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>> -l
>>>>>>>>>> ab
>>>>>>>>>> .o
>>>>>>>>>> rg
>>>>>>>>>>  --
>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>> 
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>a
>>>> b.
>>>>>>>>>> or
>>>>>>>>>> g
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>> 
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>a
>>>> b.
>>>>>>>>>> or
>>>>>>>>>> g
>>>>>>>>>>  _______________________________________________
>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>> 
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>ab
>>>> .o
>>>>>>>>>> rg
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>>
>>>>
>>>> --
>>>> Scientific Programmer
>>>> Center for Computational Regulatory Genomics
>>>> Beckman Institute,
>>>> California Institute of Technology
>>>> http://www.spbase.org
>>>>
>>>> --
>>>> Scientific Programmer
>>>> Center for Computational Regulatory Genomics
>>>> Beckman Institute,
>>>> California Institute of Technology
>>>> http://www.spbase.org
>>>>
>>>>
>>>>
>>>
>>>
>>>
>>
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>





From mark.rose at syngenta.com  Sat Dec  8 10:06:00 2012
From: mark.rose at syngenta.com (mark.rose at syngenta.com)
Date: Sat, 8 Dec 2012 11:06:00 -0500
Subject: [maker-devel] FW: maker error
In-Reply-To: <50C36102.6080306@mark62.me>
References: <50C36102.6080306@mark62.me>
Message-ID: <F0C46C4D691E2047A95E0293D5660AD00BC1359B99@USETCMSXMB03.NAFTA.SYNGENTA.ORG>

Hi

I just installed maker and am trying to run it with the sample data but get the following error:

$ maker
STATUS: Parsing control files...
WARNING: RepBase is not installed for RepeatMasker. This limits RepeatMasker's functionality and makes the model_org option in the control files virtually meaningless. MAKER will now reconfigure for simple repeat masking only.
STATUS: Processing and indexing input FASTA files...
Segmentation fault (core dumped)

I've attached the config files and the output of $maker --debug

Thanks for your help

Mark




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From carsonhh at gmail.com  Sun Dec  9 13:16:53 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Sun, 09 Dec 2012 14:16:53 -0500
Subject: [maker-devel] FW: maker error
In-Reply-To: <F0C46C4D691E2047A95E0293D5660AD00BC1359B99@USETCMSXMB03.NAFTA.SYNGENTA.ORG>
Message-ID: <CCEA4C91.16F67%carsonhh@gmail.com>

The error is most likely one related to Berkley DB on some systems that
has been fixed in the devel version of maker.  I've updated the maker
download at yandell-lab.org to version 2.27, so it also has the fix
integrated.

Thanks,
Carson




On 12-12-08 11:06 AM, "mark.rose at syngenta.com" <mark.rose at syngenta.com>
wrote:

>Hi
>
>I just installed maker and am trying to run it with the sample data but
>get the following error:
>
>$ maker
>STATUS: Parsing control files...
>WARNING: RepBase is not installed for RepeatMasker. This limits
>RepeatMasker's functionality and makes the model_org option in the
>control files virtually meaningless. MAKER will now reconfigure for
>simple repeat masking only.
>STATUS: Processing and indexing input FASTA files...
>Segmentation fault (core dumped)
>
>I've attached the config files and the output of $maker --debug
>
>Thanks for your help
>
>Mark
>
>
>
>
>This message may contain confidential information. If you are not the
>designated recipient, please notify the sender immediately, and delete
>the original and any copies. Any use of the message by you is prohibited.
>_______________________________________________
>maker-devel mailing list
>maker-devel at box290.bluehost.com
>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org





From carsonhh at gmail.com  Sun Dec  9 13:33:22 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Sun, 09 Dec 2012 14:33:22 -0500
Subject: [maker-devel] MAKER download updated to 2.27
Message-ID: <CCEA51B2.16F91%carsonhh@gmail.com>

MAKER has now been updated to version 2.27-beta on the yandell-lab.org
download site


Changes
* Fix parsing failure that rarely happen in some exonerate results
* Faster performance on NFS
* Workaround for filesystems that don't support hard links, and new command
line options to completely turn off file locking during runs
* Support for more indexing types beyond Berkley DB
* Fix for seg fault during indexing on some systems
* Better support for more MPI flavors (OpenMPi and MVAPICH2)
* Non-standard nucleotides now allowed although not recommended because they
may cause compatibility issues when you try and use MAKER results with other
programs that don't support those nucleotides.
* Other incremental bug fixes and performance enhancements.

Thanks,
Carson




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From parulk at caltech.edu  Mon Dec 10 21:28:24 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Mon, 10 Dec 2012 19:28:24 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCE7FF16.16F0A%carsonhh@gmail.com>
References: <CCE7FF16.16F0A%carsonhh@gmail.com>
Message-ID: <3576.131.215.15.234.1355196504.squirrel@webmail.caltech.edu>

Dear Carson, Thanks a lot for detailed explanation and all the help with
running and understanding maker2.


> Yes.  Lamprey is not a good match for sea urchin.  When training Augusuts
> you can sometimes use other genomes as starting points and let Augustus
> then modify that species to match the models you provided, which can be
> better than de novo training under certain circumstances. But given sea
> urchin's evolutionary distance from all the other species bundled with
> augustus, its probably not a good starting point.  So protein2genome
> derived models and cegma based training are probably your best options.
>
> --Carson
>
>
> On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>
>>Sorry for not checking this before, just to answer my own question I just
>>found after reading augustus documentation that autoAugTrain.pl should
>>work for generating training dataset for Augustus from using the
>>gene-model hints from first pass run of maker and using
>>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script to
>>generate training.gb
>>
>>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>>
>>I believe should work better than using lamprey to train augustus.
>>
>>Thanks and regards,
>>Parul Kudtarkar
>>
>>> Dear Carson,
>>>
>>> Thanks for detailed explanation and help. Now we know the exact
>>>parameters
>>> that should help us with generating good gene-model.
>>>
>>> The genome for which we are working on gene predictions is
>>> Echinoderm(sea-urchin). lamprey was the closest organism for training
>>> augustus that I could find. A quick question for training augustus,
>>>there
>>> is augustus_species option how would you go from training data
>>> generated
>>> by zff2augustus_gbk.pl > train.gb as specified here
>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>>> generating the species folder that can be specified to augustus_species
>>> option.
>>>
>>> The average expected gene-length in our case is ~15kb.
>>> We also have a good repeat library for our genome.
>>>
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>
>>>> For step 2 and 3, use lamprey rather than human in augustus.  For some
>>>> reason the current version of augustus doesn't diplay it as an option
>>>> for
>>>> the species help menu (so I didn't see it), but it's there in
>>>> ?/augustus/config/species/lamprey
>>>>
>>>> For any additional training, make copies into
>>>> ?/augustus/config/species/lamprey2 and
>>>> ?/augustus/config/species/lamprey3
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>
>>>> From:  Carson Holt <carsonhh at gmail.com>
>>>> Date:  Friday, 7 December, 2012 10:22 AM
>>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>>> "maker-devel at yandell-lab.org"
>>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>>> Subject:  Re: [maker-devel] AED score
>>>>
>>>> Just to add to Daniels comments.
>>>>
>>>> Things to change in step 1:
>>>>> protein= <just try and add more protein evidence in general>
>>>>> est2genome=0
>>>>> protein2genome=1
>>>>> split_hit=20000
>>>>> min_contig=50000
>>>>
>>>> Reasoning:
>>>>> Your ESTs are very short especially if this is a lamprey species
>>>>> which
>>>>> have
>>>>> very long introns and really short exons.  In lamprey (i.e.
>>>>> Petromyzon
>>>>> marinus), genes tend to be very long (remember gene lengths include
>>>>> introns
>>>>> and UTR and is not just the size of the coding sequence), so contigs
>>>>> shorter
>>>>> than 50kb are useless for training as you are unlikely to get nice
>>>>> complete
>>>>> gene models on those.  Also lampreys have very long introns, so you
>>>>> have
>>>>> to
>>>>> allow for bigger introns in alignments (split_hit parameter).
>>>>> Finally
>>>>> add as
>>>>> much protein evidence from as many sources as possible.  Your maker
>>>>> training
>>>>> run will take a long time as proteins take forever to align, but
>>>>> because
>>>>> of
>>>>> the evolutionary distance of lamprey from everything else and the
>>>>>short
>>>>> exon
>>>>> structure of its genome, very little aligns directly to its genome
>>>>>from
>>>>> other
>>>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>>>> species
>>>>> because of what you said about the  augustus species file you are
>>>>> using.
>>>>> Really the only thing closely related to lampreys unfortunately are
>>>>> other
>>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>>>>> lamprey
>>>>> (while they branch closely together on the tree of life, there are
>>>>> too
>>>>> many
>>>>> years since the last common ancestor).  So while they may have
>>>>> similar
>>>>> issues
>>>>> related to annotation (long introns and short exons etc.) they will
>>>>>not
>>>>> really
>>>>> match that well for the gene predictor or even protein alignments.
>>>>
>>>> Additional note:
>>>>> I have training files for the lamprey species Petromyzon marinus for
>>>>> both
>>>>> Augustus and SNAP that I could share with you in a few week, when the
>>>>> genome
>>>>> publication is is released.  But before that happens, new gene models
>>>>> will be
>>>>> available  through the UCSC browser (hopefully within a couple of
>>>>> weeks), and
>>>>> gene models are already available through ENSEMBL.  Get those protein
>>>>> files
>>>>> for training, it may be a big help for you.  If you want early access
>>>>> to
>>>>> the
>>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>>request
>>>>> it
>>>>> from Weiming Li at Michigan State University (the head of that genome
>>>>> project).
>>>>>
>>>>
>>>>
>>>> Things to change in step 2:
>>>>> Optimally you would be doing de novo training using mRNAseq results,
>>>>> but
>>>>> with
>>>>> on;ly sparse protein alignments and such a fragmented assembly, you
>>>>>are
>>>>> probably better off just trying to adapt the human HMM files.  They
>>>>> won't
>>>>> match that well, but you probably won't have the evidence for De Novo
>>>>> training.  First make a copy of the augustus human species directory
>>>>> and
>>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>>>> retraining
>>>>> augustus using your new models.  You will have to edit multiple files
>>>>> in
>>>>> the
>>>>> directory after you copy it so that they no longer say human or homo
>>>>> sapiens
>>>>> internally or in the file name.  Use maker2zff to generate the
>>>>>filtered
>>>>> ZFF
>>>>> file for training SNAP, but don't train SNAP.  Rather use the
>>>>> training
>>>>> file to
>>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>>
>>>>> MAKE a backup of the step 1 maker output directory and run step 2 in
>>>>> the
>>>>> old
>>>>> step 1 directory (this allows you to change the parameters and reuse
>>>>> files
>>>>> form step 1 so you don't have to recalculate all the protein and EST
>>>>> alignments).  So control files for step 2 are identical to step 1
>>>>> except
>>>>> for
>>>>> these parameters.
>>>>>
>>>>> protein2genome=0
>>>>> augustus_species=lamprey
>>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>>
>>>>> Don't both training SNAP here as you probably won't have enough data
>>>>> and
>>>>> you
>>>>> assembly is too fragmented for it to work well, so just stick to
>>>>> augustus.
>>>>> Try SNAP if you want just to see how well it works.  Manually open up
>>>>> the
>>>>> largest contigs in a viewer to look at the models produced from the
>>>>> MAKER run
>>>>> to see if they look reasonable (this will also help you decide
>>>>> whether
>>>>> to keep
>>>>> SNAP).
>>>>>
>>>>
>>>> Things to change in step 3:
>>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>>>>> make
>>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>>> ?/augustus/config/species/lamprey2 (editing all the files and names
>>>>> as
>>>>> you did
>>>>> in step 2). This way you don't loose that training data if you decide
>>>>> to
>>>>> step
>>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>>
>>>>> augustus_species=lamprey2
>>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>>
>>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>>> (This
>>>>> is
>>>>> for file reuse, so the step will run fast).  This must be the exact
>>>>> same
>>>>> step
>>>>> directory as step 2 for the reuse trick to work.
>>>>>
>>>>> Manually review the models and if you are satisfied move to step 4.
>>>>> Also note
>>>>> that most parameters including the protein, EST, and repeats should
>>>>>not
>>>>> change
>>>>> from step1-step3, and should not be removed for step 4 either, you
>>>>> can
>>>>> add
>>>>> more evidence, but don't remove evidence (like the repeats).
>>>>>
>>>>>
>>>> Things to change in step 4:
>>>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>>>> step
>>>>> 3
>>>>> directory to get the smaller contigs annotated.  This should be your
>>>>> final
>>>>> step, although you can try altering other parameters or adding more
>>>>> evidence
>>>>> sources here etc.
>>>>>
>>>>>
>>>> For other things to keep in mind, you should consider taking extra
>>>> time
>>>> to
>>>> build a comprehensive library of repeats for your species, I know that
>>>> Petromyzon marinus was virtually unannotatable until we had a very
>>>> deep
>>>> repeat library built for it.  Any repeat library should be used in all
>>>> steps.  Also for lamprey, you will expect between 20,000-30,000 genes
>>>> both
>>>> because of your assemblies fragmentation and because of some ancestral
>>>> genome duplication.  Also be aware that lampreys appear to undergo
>>>> programmed genome loss in somatic tissues, so any gene count you get
>>>> is
>>>> only
>>>> going to represent a maximum of 75-80% of all genes unless the
>>>> assembly
>>>> is
>>>> derived from germline tissue.
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>>
>>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>
>>>>> Hi Parul,
>>>>>
>>>>> In step one, if protein2genome isn't turned on, then the protein
>>>>> alignments
>>>>> wont be used to generate gene models. Carson said before to use
>>>>> protein2genome
>>>>> to generate gene models for your trainings set, but you should know
>>>>> that
>>>>> those
>>>>> data aren't being used right now.
>>>>>
>>>>> In step 2, you can include the est and protein evidence that you used
>>>>> in
>>>>> step
>>>>> one, and the ab-initio predictors will takes those data as hints to
>>>>> guide
>>>>> their predictions. Also, are you reannotating human here? I'm just
>>>>> wondering
>>>>> why the snap file is called Pult, but the augustus species model is
>>>>> human.
>>>>> Also, I think you should include the same masking files from step 1,
>>>>> otherwise
>>>>> the ab-initio predictors will be predicting on the unmasked sequence
>>>>> which
>>>>> will give you many spurious predictions.
>>>>>
>>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>>control
>>>>> file
>>>>> you sent for step 3 will just pass-through all of the data from
>>>>>before.
>>>>>
>>>>> In step 4, I think what you'll get is pretty close to what you
>>>>> already
>>>>> had in
>>>>> step 3. The gene models from step 3 are already based on the est and
>>>>> protein
>>>>> data from step 1, so without giving any different evidence or
>>>>>ab-initio
>>>>> predictors, I think that you will just get the same gene models that
>>>>> you
>>>>> got
>>>>> from step 3. Those gene models are what you should be using to train
>>>>> snap.
>>>>> Also, is this the same genome as in the other steps? The genome file
>>>>> here is
>>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>>
>>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>>create
>>>>> models. If you don't give any evidence (EST or protein) maker will
>>>>> not
>>>>> annotate any gene models. You have also changed the augustus species
>>>>> model in
>>>>> this step, but I don't know what you've gained by going from one
>>>>> species
>>>>> to
>>>>> another. You should be training augustus with the gene models and
>>>>> then
>>>>> creating a new species model in augustus. As I understand it, the
>>>>> filter
>>>>> only
>>>>> operates on gene models, not ab-initio predictions or alignments, so
>>>>>it
>>>>> probably isn't doing anything the way you have it set.
>>>>>
>>>>> Step 6. I think step 5 and 6 should be combined. I don't know what
>>>>> you
>>>>> mean by
>>>>> boot-strapping here too.
>>>>>
>>>>> Hopefully that clears up some of the confusion with how maker works.
>>>>> Carson
>>>>> will probably have a lot of suggestions too.
>>>>>
>>>>> Thanks,
>>>>> Daniel
>>>>>
>>>>> Daniel Ence
>>>>> Graduate Student
>>>>> Eccles Institute of Human Genetics
>>>>> University of Utah
>>>>> 15 North 2030 East, Room 2100
>>>>> Salt Lake City, UT 84112-5330
>>>>> ________________________________________
>>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>>> To: carsonhh at gmail.com
>>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>>> Subject: Re: [maker-devel] AED score
>>>>>
>>>>> Hi Carson,
>>>>>
>>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>>> 30,000
>>>>> genes.
>>>>> Here are the step
>>>>> Step1. EST and proteins are used to predict gene-models. the
>>>>> resulting
>>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>>> turned
>>>>> ON
>>>>> Step2. Augustus and SNAP is used to predict genes.
>>>>> Step3. The results are re-annoated(boot-strap)
>>>>> Step4. EST and proteins are used to predict gene-models. The gff file
>>>>> from
>>>>> step3. is used as model_gff. The resulting file is used as training
>>>>> data-set for SNAP in step2
>>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to
>>>>>0.5
>>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5
>>>>> and
>>>>> contig_size to 10kb
>>>>>
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>
>>>>> I have attached the configuration file for each step.
>>>>>>  Your output has no genes.  They've all been filtered out.  The gene
>>>>> predictions are left for reference purposes, but there are no gene
>>>>> models
>>>>>>  in the file.  You need to look at the type columns in the GFF3 file
>>>>>> -->
>>>>> match/match_part features are evidence and reference data but not
>>>>> models.
>>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>>>>> just
>>>>> want gene models in your file you can use the gff3_merge script with
>>>>> the
>>>>> -g option, and it will only print out the gene models.
>>>>>>  I think you may be misinterpreting what is happening at different
>>>>>> steps,
>>>>> as well as how to read the result files.  Could you give me a
>>>>> detailed
>>>>> explanation of what you expect to get back together with your control
>>>>> files and I can walk you through the configuration, and indicate what
>>>>> to
>>>>> expect.  Also what was the report like from CEGMA. Could you include
>>>>> the
>>>>> report file that shows how complete your genome is and how fragmented
>>>>> it
>>>>> is?
>>>>>>  Thanks,
>>>>>>  Carson
>>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Dear Carson,
>>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>>> Though for previous step(ab-intio gene predictions keep_preds was
>>>>>>>set
>>>>>>> to
>>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>>> Scaffold1_out.gff.
>>>>>>> Please advice.
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>>  You should always get all predictions, but should only get models
>>>>> (match/match_part) with AED scores less than 0.5.  You should never
>>>>>get
>>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>>>> keep_preds set.
>>>>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>>>>> your
>>>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>>> case,
>>>>>>>>  just set it to 0.  If the second one in the case, could you send
>>>>>>>>me
>>>>> example GFF3?
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>>> Dear Carson,
>>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>>> short
>>>>>>>>>  ESTs.
>>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>>> prediction(used as training dataset)and abinitio
>>>>>>>>> gene-prediction).
>>>>> Here
>>>>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>>>>  however
>>>>>>>>>  I
>>>>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>>>>  resulting
>>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>>>>  initial
>>>>>>>>> gff3 file.
>>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>>>  eukaryotic
>>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>>>> file
>>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 =
>>>>>>>>> yes,
>>>>>>>>> 0
>>>>>>>>> =
>>>>> no
>>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0
>>>>>>>>> =
>>>>>>>>> no
>>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>>>>  no
>>>>>>>>> #-----MAKER Behavior Options
>>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed
>>>>>>>>> (bound
>>>>>>>>> by
>>>>> 0
>>>>>>>>> and 1)
>>>>>>>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>>>> partial
>>>>>>>>>> at
>>>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>>>> those
>>>>> by
>>>>>>>>>>  using maker's est_gff option to pass in results from cufflinks
>>>>>>>>>>or
>>>>>>>>>> trinity.
>>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
>>>>> size,
>>>>>>>>>> just
>>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>>> maker_opts.ctl file.
>>>>>>>>>>  Thanks,
>>>>>>>>>>  Carson
>>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>>with
>>>>> N50
>>>>>>>>>>>  of
>>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>>> reason
>>>>>>>>>>>  when
>>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>>> predicted
>>>>> despite the model_gff file has few genes with scores less than 0.75?
>>>>> Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>>> contig.
>>>>>>>>>>> First
>>>>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>>>>> also
>>>>>>>>>>> have
>>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>>> getting
>>>>> many
>>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>>> models
>>>>> that
>>>>>>>>>>> are
>>>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>>>> piece
>>>>>>>>>>> of
>>>>>>>>>>> a
>>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>>reason
>>>>>>>>>>>  unless
>>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>>>>  protein
>>>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>>>> need
>>>>> to
>>>>>>>>>>> add
>>>>>>>>>>>  more proteins from a couple of related species, and you might
>>>>> consider
>>>>>>>>>>> using protein2genome rather than est2genome as a predictor if
>>>>>>>>>>>you
>>>>> are
>>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>>> produced
>>>>> models
>>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>>with
>>>>> the
>>>>>>>>>>> AED_threshold with such limited protein support does create an
>>>>> artificial
>>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>>  How many contigs do you have in total and what is the N50
>>>>>>>>>>> value
>>>>> for
>>>>>>>>>>> the
>>>>>>>>>>> assembly? If you have a large number of very short contigs, you
>>>>>>>>>>> will
>>>>>>>>>>>  get
>>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>>> contigs
>>>>>>>>>>>  and
>>>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>>>> just
>>>>> assembled in a slightly different way (so you can get bits and
>>>>> pieces
>>>>>>>>>>>  of
>>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>>  confounding
>>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>>> would
>>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>>  completeness
>>>>>>>>>>> as
>>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>>> statistics
>>>>>>>>>>> produced
>>>>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>>>>> those
>>>>>>>>>>>  that
>>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to
>>>>>>>>>>> be
>>>>> shorter
>>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>>CEGMA
>>>>> gives
>>>>>>>>>>>  a
>>>>>>>>>>> high partial percentage and a low complete percentage, then
>>>>>>>>>>> this
>>>>>>>>>>>  pattern
>>>>>>>>>>> can be expected to be even more exaggerated for other genes in
>>>>>>>>>>> the
>>>>> genome.
>>>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>>>> well
>>>>> then
>>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>>genomes
>>>>> end
>>>>>>>>>>>  up
>>>>>>>>>>> having extremely fragmented assemblies (on the order of 100,000
>>>>> contigs),
>>>>>>>>>>>  and if they are distantly related to other annotated species
>>>>>>>>>>>few
>>>>>>>>>>> proteins
>>>>>>>>>>>  may align to the contigs because the introns in the alignments
>>>>> tend
>>>>>>>>>>>  to
>>>>>>>>>>> be
>>>>>>>>>>>  so long and exons so short that it pushes down the
>>>>>>>>>>> significance
>>>>> scores
>>>>>>>>>>> too
>>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if
>>>>>>>>>>> not
>>>>> only
>>>>>>>>>>>  way
>>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>>  Thanks,
>>>>>>>>>>>  Carson
>>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>score.
>>>>> The
>>>>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>>>>> file
>>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>>  least
>>>>>>>>>>>  5
>>>>>>>>>>> genes with AED score less than 0.75. However there were no
>>>>>>>>>>> genes
>>>>>>>>>>>  predicted
>>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have
>>>>>>>>>>> also
>>>>>>>>>>> attached
>>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>> just
>>>>>>>>>>> want
>>>>>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>>>>>> maker.
>>>>>>>>>>> On
>>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>>> training
>>>>>>>>>>>  gene
>>>>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>>>>  dataset
>>>>>>>>>>> for
>>>>>>>>>>>  SNAP training.  There are a number of filters available. Just
>>>>> call
>>>>>>>>>>>  the
>>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>>  Thanks,
>>>>>>>>>>>  Carson
>>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>> Hi Parul,
>>>>>>>>>>> I think the way you described (with the maker_opts.ctl file) is
>>>>> how
>>>>>>>>>>> you
>>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>>> Daniel
>>>>>>>>>>> Daniel Ence
>>>>>>>>>>> Graduate Student
>>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>>> University of Utah
>>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>>> ________________________________________
>>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>  Kudtarkar
>>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>>> Also, are there any other parameters that are required when
>>>>> filtering
>>>>>>>>>>> based on AED score?
>>>>>>>>>>>  Hello Carson,
>>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>>> models
>>>>>>>>>>> at
>>>>>>>>>>> specific AED score.
>>>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>>>> to
>>>>>>>>>>> parameters
>>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>> genes
>>>>>>>>>>> gff3
>>>>>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>>>> 1
>>>>>>>>>>>  is
>>>>>>>>>>> worst
>>>>>>>>>>>  as
>>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>>> parameter
>>>>>>>>>>> to
>>>>>>>>>>>  require better matching to the evidence by setting it closer
>>>>> to
>>>>>>>>>>> 0.
>>>>>>>>>>> You
>>>>>>>>>>>  can
>>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>>> your
>>>>>>>>>>> calls
>>>>>>>>>>> may
>>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>>  --Carson
>>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>> Dear Maker community,
>>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>>  based
>>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>>Augustus
>>>>> predictions, followed by boot-strapping. I would typically expect
>>>>> 20-30K
>>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>>  indicating
>>>>>>>>>>>  too
>>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>>> predication/script to retain predictions with AED score 1 and
>>>>>>>>>>> if
>>>>>>>>>>> yes
>>>>>>>>>>> how
>>>>>>>>>>> to go about this?
>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>> -l
>>>>>>>>>>> ab
>>>>>>>>>>> .o
>>>>>>>>>>> rg
>>>>>>>>>>>  --
>>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>>a
>>>>> b.
>>>>>>>>>>> or
>>>>>>>>>>> g
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>>a
>>>>> b.
>>>>>>>>>>> or
>>>>>>>>>>> g
>>>>>>>>>>>  _______________________________________________
>>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>>>
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>>ab
>>>>> .o
>>>>>>>>>>> rg
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>
>>>>>
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>>>>
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>
>>
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From carsonhh at gmail.com  Tue Dec 11 08:21:44 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Tue, 11 Dec 2012 09:21:44 -0500
Subject: [maker-devel] AED score
In-Reply-To: <3576.131.215.15.234.1355196504.squirrel@webmail.caltech.edu>
Message-ID: <CCECAB6F.16FD3%carsonhh@gmail.com>

Thanks Parul.  If you need any more help, just let us know.

--Carson



On 12-12-10 10:28 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Carson, Thanks a lot for detailed explanation and all the help with
>running and understanding maker2.
>
>
>> Yes.  Lamprey is not a good match for sea urchin.  When training
>>Augusuts
>> you can sometimes use other genomes as starting points and let Augustus
>> then modify that species to match the models you provided, which can be
>> better than de novo training under certain circumstances. But given sea
>> urchin's evolutionary distance from all the other species bundled with
>> augustus, its probably not a good starting point.  So protein2genome
>> derived models and cegma based training are probably your best options.
>>
>> --Carson
>>
>>
>> On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>
>>>Sorry for not checking this before, just to answer my own question I
>>>just
>>>found after reading augustus documentation that autoAugTrain.pl should
>>>work for generating training dataset for Augustus from using the
>>>gene-model hints from first pass run of maker and using
>>>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script to
>>>generate training.gb
>>>
>>>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>>>
>>>I believe should work better than using lamprey to train augustus.
>>>
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>
>>>> Dear Carson,
>>>>
>>>> Thanks for detailed explanation and help. Now we know the exact
>>>>parameters
>>>> that should help us with generating good gene-model.
>>>>
>>>> The genome for which we are working on gene predictions is
>>>> Echinoderm(sea-urchin). lamprey was the closest organism for training
>>>> augustus that I could find. A quick question for training augustus,
>>>>there
>>>> is augustus_species option how would you go from training data
>>>> generated
>>>> by zff2augustus_gbk.pl > train.gb as specified here
>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>>>> generating the species folder that can be specified to
>>>>augustus_species
>>>> option.
>>>>
>>>> The average expected gene-length in our case is ~15kb.
>>>> We also have a good repeat library for our genome.
>>>>
>>>> Thanks and regards,
>>>> Parul Kudtarkar
>>>>
>>>>> For step 2 and 3, use lamprey rather than human in augustus.  For
>>>>>some
>>>>> reason the current version of augustus doesn't diplay it as an option
>>>>> for
>>>>> the species help menu (so I didn't see it), but it's there in
>>>>> ?/augustus/config/species/lamprey
>>>>>
>>>>> For any additional training, make copies into
>>>>> ?/augustus/config/species/lamprey2 and
>>>>> ?/augustus/config/species/lamprey3
>>>>>
>>>>> Thanks,
>>>>> Carson
>>>>>
>>>>>
>>>>>
>>>>> From:  Carson Holt <carsonhh at gmail.com>
>>>>> Date:  Friday, 7 December, 2012 10:22 AM
>>>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>>>> "maker-devel at yandell-lab.org"
>>>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>>>> Subject:  Re: [maker-devel] AED score
>>>>>
>>>>> Just to add to Daniels comments.
>>>>>
>>>>> Things to change in step 1:
>>>>>> protein= <just try and add more protein evidence in general>
>>>>>> est2genome=0
>>>>>> protein2genome=1
>>>>>> split_hit=20000
>>>>>> min_contig=50000
>>>>>
>>>>> Reasoning:
>>>>>> Your ESTs are very short especially if this is a lamprey species
>>>>>> which
>>>>>> have
>>>>>> very long introns and really short exons.  In lamprey (i.e.
>>>>>> Petromyzon
>>>>>> marinus), genes tend to be very long (remember gene lengths include
>>>>>> introns
>>>>>> and UTR and is not just the size of the coding sequence), so contigs
>>>>>> shorter
>>>>>> than 50kb are useless for training as you are unlikely to get nice
>>>>>> complete
>>>>>> gene models on those.  Also lampreys have very long introns, so you
>>>>>> have
>>>>>> to
>>>>>> allow for bigger introns in alignments (split_hit parameter).
>>>>>> Finally
>>>>>> add as
>>>>>> much protein evidence from as many sources as possible.  Your maker
>>>>>> training
>>>>>> run will take a long time as proteins take forever to align, but
>>>>>> because
>>>>>> of
>>>>>> the evolutionary distance of lamprey from everything else and the
>>>>>>short
>>>>>> exon
>>>>>> structure of its genome, very little aligns directly to its genome
>>>>>>from
>>>>>> other
>>>>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>>>>> species
>>>>>> because of what you said about the  augustus species file you are
>>>>>> using.
>>>>>> Really the only thing closely related to lampreys unfortunately are
>>>>>> other
>>>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>>>>>> lamprey
>>>>>> (while they branch closely together on the tree of life, there are
>>>>>> too
>>>>>> many
>>>>>> years since the last common ancestor).  So while they may have
>>>>>> similar
>>>>>> issues
>>>>>> related to annotation (long introns and short exons etc.) they will
>>>>>>not
>>>>>> really
>>>>>> match that well for the gene predictor or even protein alignments.
>>>>>
>>>>> Additional note:
>>>>>> I have training files for the lamprey species Petromyzon marinus for
>>>>>> both
>>>>>> Augustus and SNAP that I could share with you in a few week, when
>>>>>>the
>>>>>> genome
>>>>>> publication is is released.  But before that happens, new gene
>>>>>>models
>>>>>> will be
>>>>>> available  through the UCSC browser (hopefully within a couple of
>>>>>> weeks), and
>>>>>> gene models are already available through ENSEMBL.  Get those
>>>>>>protein
>>>>>> files
>>>>>> for training, it may be a big help for you.  If you want early
>>>>>>access
>>>>>> to
>>>>>> the
>>>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>>>request
>>>>>> it
>>>>>> from Weiming Li at Michigan State University (the head of that
>>>>>>genome
>>>>>> project).
>>>>>>
>>>>>
>>>>>
>>>>> Things to change in step 2:
>>>>>> Optimally you would be doing de novo training using mRNAseq results,
>>>>>> but
>>>>>> with
>>>>>> on;ly sparse protein alignments and such a fragmented assembly, you
>>>>>>are
>>>>>> probably better off just trying to adapt the human HMM files.  They
>>>>>> won't
>>>>>> match that well, but you probably won't have the evidence for De
>>>>>>Novo
>>>>>> training.  First make a copy of the augustus human species directory
>>>>>> and
>>>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>>>>> retraining
>>>>>> augustus using your new models.  You will have to edit multiple
>>>>>>files
>>>>>> in
>>>>>> the
>>>>>> directory after you copy it so that they no longer say human or homo
>>>>>> sapiens
>>>>>> internally or in the file name.  Use maker2zff to generate the
>>>>>>filtered
>>>>>> ZFF
>>>>>> file for training SNAP, but don't train SNAP.  Rather use the
>>>>>> training
>>>>>> file to
>>>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>>>
>>>>>> MAKE a backup of the step 1 maker output directory and run step 2 in
>>>>>> the
>>>>>> old
>>>>>> step 1 directory (this allows you to change the parameters and reuse
>>>>>> files
>>>>>> form step 1 so you don't have to recalculate all the protein and EST
>>>>>> alignments).  So control files for step 2 are identical to step 1
>>>>>> except
>>>>>> for
>>>>>> these parameters.
>>>>>>
>>>>>> protein2genome=0
>>>>>> augustus_species=lamprey
>>>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>>>
>>>>>> Don't both training SNAP here as you probably won't have enough data
>>>>>> and
>>>>>> you
>>>>>> assembly is too fragmented for it to work well, so just stick to
>>>>>> augustus.
>>>>>> Try SNAP if you want just to see how well it works.  Manually open
>>>>>>up
>>>>>> the
>>>>>> largest contigs in a viewer to look at the models produced from the
>>>>>> MAKER run
>>>>>> to see if they look reasonable (this will also help you decide
>>>>>> whether
>>>>>> to keep
>>>>>> SNAP).
>>>>>>
>>>>>
>>>>> Things to change in step 3:
>>>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>>>>>> make
>>>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>>>> ?/augustus/config/species/lamprey2 (editing all the files and names
>>>>>> as
>>>>>> you did
>>>>>> in step 2). This way you don't loose that training data if you
>>>>>>decide
>>>>>> to
>>>>>> step
>>>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>>>
>>>>>> augustus_species=lamprey2
>>>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>>>
>>>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>>>> (This
>>>>>> is
>>>>>> for file reuse, so the step will run fast).  This must be the exact
>>>>>> same
>>>>>> step
>>>>>> directory as step 2 for the reuse trick to work.
>>>>>>
>>>>>> Manually review the models and if you are satisfied move to step 4.
>>>>>> Also note
>>>>>> that most parameters including the protein, EST, and repeats should
>>>>>>not
>>>>>> change
>>>>>> from step1-step3, and should not be removed for step 4 either, you
>>>>>> can
>>>>>> add
>>>>>> more evidence, but don't remove evidence (like the repeats).
>>>>>>
>>>>>>
>>>>> Things to change in step 4:
>>>>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>>>>> step
>>>>>> 3
>>>>>> directory to get the smaller contigs annotated.  This should be your
>>>>>> final
>>>>>> step, although you can try altering other parameters or adding more
>>>>>> evidence
>>>>>> sources here etc.
>>>>>>
>>>>>>
>>>>> For other things to keep in mind, you should consider taking extra
>>>>> time
>>>>> to
>>>>> build a comprehensive library of repeats for your species, I know
>>>>>that
>>>>> Petromyzon marinus was virtually unannotatable until we had a very
>>>>> deep
>>>>> repeat library built for it.  Any repeat library should be used in
>>>>>all
>>>>> steps.  Also for lamprey, you will expect between 20,000-30,000 genes
>>>>> both
>>>>> because of your assemblies fragmentation and because of some
>>>>>ancestral
>>>>> genome duplication.  Also be aware that lampreys appear to undergo
>>>>> programmed genome loss in somatic tissues, so any gene count you get
>>>>> is
>>>>> only
>>>>> going to represent a maximum of 75-80% of all genes unless the
>>>>> assembly
>>>>> is
>>>>> derived from germline tissue.
>>>>>
>>>>> Thanks,
>>>>> Carson
>>>>>
>>>>>
>>>>>>
>>>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>
>>>>>> Hi Parul,
>>>>>>
>>>>>> In step one, if protein2genome isn't turned on, then the protein
>>>>>> alignments
>>>>>> wont be used to generate gene models. Carson said before to use
>>>>>> protein2genome
>>>>>> to generate gene models for your trainings set, but you should know
>>>>>> that
>>>>>> those
>>>>>> data aren't being used right now.
>>>>>>
>>>>>> In step 2, you can include the est and protein evidence that you
>>>>>>used
>>>>>> in
>>>>>> step
>>>>>> one, and the ab-initio predictors will takes those data as hints to
>>>>>> guide
>>>>>> their predictions. Also, are you reannotating human here? I'm just
>>>>>> wondering
>>>>>> why the snap file is called Pult, but the augustus species model is
>>>>>> human.
>>>>>> Also, I think you should include the same masking files from step 1,
>>>>>> otherwise
>>>>>> the ab-initio predictors will be predicting on the unmasked sequence
>>>>>> which
>>>>>> will give you many spurious predictions.
>>>>>>
>>>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>>>control
>>>>>> file
>>>>>> you sent for step 3 will just pass-through all of the data from
>>>>>>before.
>>>>>>
>>>>>> In step 4, I think what you'll get is pretty close to what you
>>>>>> already
>>>>>> had in
>>>>>> step 3. The gene models from step 3 are already based on the est and
>>>>>> protein
>>>>>> data from step 1, so without giving any different evidence or
>>>>>>ab-initio
>>>>>> predictors, I think that you will just get the same gene models that
>>>>>> you
>>>>>> got
>>>>>> from step 3. Those gene models are what you should be using to train
>>>>>> snap.
>>>>>> Also, is this the same genome as in the other steps? The genome file
>>>>>> here is
>>>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>>>
>>>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>>>create
>>>>>> models. If you don't give any evidence (EST or protein) maker will
>>>>>> not
>>>>>> annotate any gene models. You have also changed the augustus species
>>>>>> model in
>>>>>> this step, but I don't know what you've gained by going from one
>>>>>> species
>>>>>> to
>>>>>> another. You should be training augustus with the gene models and
>>>>>> then
>>>>>> creating a new species model in augustus. As I understand it, the
>>>>>> filter
>>>>>> only
>>>>>> operates on gene models, not ab-initio predictions or alignments, so
>>>>>>it
>>>>>> probably isn't doing anything the way you have it set.
>>>>>>
>>>>>> Step 6. I think step 5 and 6 should be combined. I don't know what
>>>>>> you
>>>>>> mean by
>>>>>> boot-strapping here too.
>>>>>>
>>>>>> Hopefully that clears up some of the confusion with how maker works.
>>>>>> Carson
>>>>>> will probably have a lot of suggestions too.
>>>>>>
>>>>>> Thanks,
>>>>>> Daniel
>>>>>>
>>>>>> Daniel Ence
>>>>>> Graduate Student
>>>>>> Eccles Institute of Human Genetics
>>>>>> University of Utah
>>>>>> 15 North 2030 East, Room 2100
>>>>>> Salt Lake City, UT 84112-5330
>>>>>> ________________________________________
>>>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>>>> To: carsonhh at gmail.com
>>>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>
>>>>>> Hi Carson,
>>>>>>
>>>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>>>> 30,000
>>>>>> genes.
>>>>>> Here are the step
>>>>>> Step1. EST and proteins are used to predict gene-models. the
>>>>>> resulting
>>>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>>>> turned
>>>>>> ON
>>>>>> Step2. Augustus and SNAP is used to predict genes.
>>>>>> Step3. The results are re-annoated(boot-strap)
>>>>>> Step4. EST and proteins are used to predict gene-models. The gff
>>>>>>file
>>>>>> from
>>>>>> step3. is used as model_gff. The resulting file is used as training
>>>>>> data-set for SNAP in step2
>>>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to
>>>>>>0.5
>>>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5
>>>>>> and
>>>>>> contig_size to 10kb
>>>>>>
>>>>>> Thanks and regards,
>>>>>> Parul Kudtarkar
>>>>>>
>>>>>> I have attached the configuration file for each step.
>>>>>>>  Your output has no genes.  They've all been filtered out.  The
>>>>>>>gene
>>>>>> predictions are left for reference purposes, but there are no gene
>>>>>> models
>>>>>>>  in the file.  You need to look at the type columns in the GFF3
>>>>>>>file
>>>>>>> -->
>>>>>> match/match_part features are evidence and reference data but not
>>>>>> models.
>>>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>>>>>> just
>>>>>> want gene models in your file you can use the gff3_merge script with
>>>>>> the
>>>>>> -g option, and it will only print out the gene models.
>>>>>>>  I think you may be misinterpreting what is happening at different
>>>>>>> steps,
>>>>>> as well as how to read the result files.  Could you give me a
>>>>>> detailed
>>>>>> explanation of what you expect to get back together with your
>>>>>>control
>>>>>> files and I can walk you through the configuration, and indicate
>>>>>>what
>>>>>> to
>>>>>> expect.  Also what was the report like from CEGMA. Could you include
>>>>>> the
>>>>>> report file that shows how complete your genome is and how
>>>>>>fragmented
>>>>>> it
>>>>>> is?
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>> Dear Carson,
>>>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>>>> Though for previous step(ab-intio gene predictions keep_preds was
>>>>>>>>set
>>>>>>>> to
>>>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>>>> Scaffold1_out.gff.
>>>>>>>> Please advice.
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>>  You should always get all predictions, but should only get
>>>>>>>>>models
>>>>>> (match/match_part) with AED scores less than 0.5.  You should never
>>>>>>get
>>>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>>>>> keep_preds set.
>>>>>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>>>>>> your
>>>>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>>>> case,
>>>>>>>>>  just set it to 0.  If the second one in the case, could you send
>>>>>>>>>me
>>>>>> example GFF3?
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>>> Dear Carson,
>>>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>>>> short
>>>>>>>>>>  ESTs.
>>>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>>>> prediction(used as training dataset)and abinitio
>>>>>>>>>> gene-prediction).
>>>>>> Here
>>>>>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>>>>>  however
>>>>>>>>>>  I
>>>>>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>>>>>  resulting
>>>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>>>>>  initial
>>>>>>>>>> gff3 file.
>>>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>>>>  eukaryotic
>>>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>>>>> file
>>>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 =
>>>>>>>>>> yes,
>>>>>>>>>> 0
>>>>>>>>>> =
>>>>>> no
>>>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0
>>>>>>>>>> =
>>>>>>>>>> no
>>>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0
>>>>>>=
>>>>>>>>>>  no
>>>>>>>>>> #-----MAKER Behavior Options
>>>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed
>>>>>>>>>> (bound
>>>>>>>>>> by
>>>>>> 0
>>>>>>>>>> and 1)
>>>>>>>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to
>>>>>>>>>>>be
>>>>>>>>>>> partial
>>>>>>>>>>> at
>>>>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>>>>> those
>>>>>> by
>>>>>>>>>>>  using maker's est_gff option to pass in results from cufflinks
>>>>>>>>>>>or
>>>>>>>>>>> trinity.
>>>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb
>>>>>>>>>>>in
>>>>>> size,
>>>>>>>>>>> just
>>>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>>>> maker_opts.ctl file.
>>>>>>>>>>>  Thanks,
>>>>>>>>>>>  Carson
>>>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>>>with
>>>>>> N50
>>>>>>>>>>>>  of
>>>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>>>> reason
>>>>>>>>>>>>  when
>>>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>>>> predicted
>>>>>> despite the model_gff file has few genes with scores less than 0.75?
>>>>>> Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>>>> contig.
>>>>>>>>>>>> First
>>>>>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>>>>>> also
>>>>>>>>>>>> have
>>>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>>>> getting
>>>>>> many
>>>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>>>> models
>>>>>> that
>>>>>>>>>>>> are
>>>>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>>>>> piece
>>>>>>>>>>>> of
>>>>>>>>>>>> a
>>>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>>>reason
>>>>>>>>>>>>  unless
>>>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>>>>>  protein
>>>>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>>>>> need
>>>>>> to
>>>>>>>>>>>> add
>>>>>>>>>>>>  more proteins from a couple of related species, and you might
>>>>>> consider
>>>>>>>>>>>> using protein2genome rather than est2genome as a predictor if
>>>>>>>>>>>>you
>>>>>> are
>>>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>>>> produced
>>>>>> models
>>>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>>>with
>>>>>> the
>>>>>>>>>>>> AED_threshold with such limited protein support does create an
>>>>>> artificial
>>>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>>>  How many contigs do you have in total and what is the N50
>>>>>>>>>>>> value
>>>>>> for
>>>>>>>>>>>> the
>>>>>>>>>>>> assembly? If you have a large number of very short contigs,
>>>>>>>>>>>>you
>>>>>>>>>>>> will
>>>>>>>>>>>>  get
>>>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>>>> contigs
>>>>>>>>>>>>  and
>>>>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>>>>> just
>>>>>> assembled in a slightly different way (so you can get bits and
>>>>>> pieces
>>>>>>>>>>>>  of
>>>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>>>  confounding
>>>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>>>> would
>>>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>>>  completeness
>>>>>>>>>>>> as
>>>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>>>> statistics
>>>>>>>>>>>> produced
>>>>>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>>>>>> those
>>>>>>>>>>>>  that
>>>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend
>>>>>>>>>>>>to
>>>>>>>>>>>> be
>>>>>> shorter
>>>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>>>CEGMA
>>>>>> gives
>>>>>>>>>>>>  a
>>>>>>>>>>>> high partial percentage and a low complete percentage, then
>>>>>>>>>>>> this
>>>>>>>>>>>>  pattern
>>>>>>>>>>>> can be expected to be even more exaggerated for other genes in
>>>>>>>>>>>> the
>>>>>> genome.
>>>>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>>>>> well
>>>>>> then
>>>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>>>genomes
>>>>>> end
>>>>>>>>>>>>  up
>>>>>>>>>>>> having extremely fragmented assemblies (on the order of
>>>>>>>>>>>>100,000
>>>>>> contigs),
>>>>>>>>>>>>  and if they are distantly related to other annotated species
>>>>>>>>>>>>few
>>>>>>>>>>>> proteins
>>>>>>>>>>>>  may align to the contigs because the introns in the
>>>>>>>>>>>>alignments
>>>>>> tend
>>>>>>>>>>>>  to
>>>>>>>>>>>> be
>>>>>>>>>>>>  so long and exons so short that it pushes down the
>>>>>>>>>>>> significance
>>>>>> scores
>>>>>>>>>>>> too
>>>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if
>>>>>>>>>>>> not
>>>>>> only
>>>>>>>>>>>>  way
>>>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>  Carson
>>>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>>score.
>>>>>> The
>>>>>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>>>>>> file
>>>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>>>  least
>>>>>>>>>>>>  5
>>>>>>>>>>>> genes with AED score less than 0.75. However there were no
>>>>>>>>>>>> genes
>>>>>>>>>>>>  predicted
>>>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have
>>>>>>>>>>>> also
>>>>>>>>>>>> attached
>>>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if
>>>>>>>>>>>>you
>>>>>>>>>>>> just
>>>>>>>>>>>> want
>>>>>>>>>>>>  to restrict final gene models to close matches directly
>>>>>>>>>>>>within
>>>>>>>>>>>> maker.
>>>>>>>>>>>> On
>>>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>>>> training
>>>>>>>>>>>>  gene
>>>>>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>>>>>  dataset
>>>>>>>>>>>> for
>>>>>>>>>>>>  SNAP training.  There are a number of filters available. Just
>>>>>> call
>>>>>>>>>>>>  the
>>>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>  Carson
>>>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>> Hi Parul,
>>>>>>>>>>>> I think the way you described (with the maker_opts.ctl file)
>>>>>>>>>>>>is
>>>>>> how
>>>>>>>>>>>> you
>>>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>>>> Daniel
>>>>>>>>>>>> Daniel Ence
>>>>>>>>>>>> Graduate Student
>>>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>>>> University of Utah
>>>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>>>> ________________________________________
>>>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>>  Kudtarkar
>>>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>>>> Also, are there any other parameters that are required when
>>>>>> filtering
>>>>>>>>>>>> based on AED score?
>>>>>>>>>>>>  Hello Carson,
>>>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>>>> models
>>>>>>>>>>>> at
>>>>>>>>>>>> specific AED score.
>>>>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>>>>> to
>>>>>>>>>>>> parameters
>>>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>> genes
>>>>>>>>>>>> gff3
>>>>>>>>>>>>  file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>threshold?
>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>>>>> 1
>>>>>>>>>>>>  is
>>>>>>>>>>>> worst
>>>>>>>>>>>>  as
>>>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>>>> parameter
>>>>>>>>>>>> to
>>>>>>>>>>>>  require better matching to the evidence by setting it closer
>>>>>> to
>>>>>>>>>>>> 0.
>>>>>>>>>>>> You
>>>>>>>>>>>>  can
>>>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>>>> your
>>>>>>>>>>>> calls
>>>>>>>>>>>> may
>>>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>>>  --Carson
>>>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>> Dear Maker community,
>>>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>  based
>>>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>>>Augustus
>>>>>> predictions, followed by boot-strapping. I would typically expect
>>>>>> 20-30K
>>>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>  indicating
>>>>>>>>>>>>  too
>>>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>>>> predication/script to retain predictions with AED score 1 and
>>>>>>>>>>>> if
>>>>>>>>>>>> yes
>>>>>>>>>>>> how
>>>>>>>>>>>> to go about this?
>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>> 
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>> -l
>>>>>>>>>>>> ab
>>>>>>>>>>>> .o
>>>>>>>>>>>> rg
>>>>>>>>>>>>  --
>>>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-l
>>>>>>>>>>>>a
>>>>>> b.
>>>>>>>>>>>> or
>>>>>>>>>>>> g
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> maker-devel mailing list
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>>>>>>>>>>>>
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-l
>>>>>>>>>>>>a
>>>>>> b.
>>>>>>>>>>>> or
>>>>>>>>>>>> g
>>>>>>>>>>>>  _______________________________________________
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>>>>>>>>>>>>
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
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>>>>>>>>>>>>ab
>>>>>> .o
>>>>>>>>>>>> rg
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>>>>
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> Scientific Programmer
>>>> Center for Computational Regulatory Genomics
>>>> Beckman Institute,
>>>> California Institute of Technology
>>>> http://www.spbase.org
>>>>
>>>
>>>
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>>>
>>
>>
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>





From parulk at caltech.edu  Thu Dec 13 16:16:53 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Thu, 13 Dec 2012 14:16:53 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCECAB6F.16FD3%carsonhh@gmail.com>
References: <CCECAB6F.16FD3%carsonhh@gmail.com>
Message-ID: <4575.131.215.15.234.1355437013.squirrel@webmail.caltech.edu>

Dear Carson,

Could you please advice how to combine results from protein2genome
derived models and cegma based training to be provided as training species
for augustus or are theses supposed to be run as separate maker2 run(i.e.
run maker2 with training set from protein2genome first followed by
cegma-based training set)

Thanks and regards,
Parul

> Thanks Parul.  If you need any more help, just let us know.
>
> --Carson
>
>
>
> On 12-12-10 10:28 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>
>>Dear Carson, Thanks a lot for detailed explanation and all the help with
>>running and understanding maker2.
>>
>>
>>> Yes.  Lamprey is not a good match for sea urchin.  When training
>>>Augusuts
>>> you can sometimes use other genomes as starting points and let Augustus
>>> then modify that species to match the models you provided, which can be
>>> better than de novo training under certain circumstances. But given sea
>>> urchin's evolutionary distance from all the other species bundled with
>>> augustus, its probably not a good starting point.  So protein2genome
>>> derived models and cegma based training are probably your best options.
>>>
>>> --Carson
>>>
>>>
>>> On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>
>>>>Sorry for not checking this before, just to answer my own question I
>>>>just
>>>>found after reading augustus documentation that autoAugTrain.pl should
>>>>work for generating training dataset for Augustus from using the
>>>>gene-model hints from first pass run of maker and using
>>>>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script
>>>> to
>>>>generate training.gb
>>>>
>>>>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>>>>
>>>>I believe should work better than using lamprey to train augustus.
>>>>
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>
>>>>> Dear Carson,
>>>>>
>>>>> Thanks for detailed explanation and help. Now we know the exact
>>>>>parameters
>>>>> that should help us with generating good gene-model.
>>>>>
>>>>> The genome for which we are working on gene predictions is
>>>>> Echinoderm(sea-urchin). lamprey was the closest organism for training
>>>>> augustus that I could find. A quick question for training augustus,
>>>>>there
>>>>> is augustus_species option how would you go from training data
>>>>> generated
>>>>> by zff2augustus_gbk.pl > train.gb as specified here
>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>>>>> generating the species folder that can be specified to
>>>>>augustus_species
>>>>> option.
>>>>>
>>>>> The average expected gene-length in our case is ~15kb.
>>>>> We also have a good repeat library for our genome.
>>>>>
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>
>>>>>> For step 2 and 3, use lamprey rather than human in augustus.  For
>>>>>>some
>>>>>> reason the current version of augustus doesn't diplay it as an
>>>>>> option
>>>>>> for
>>>>>> the species help menu (so I didn't see it), but it's there in
>>>>>> ?/augustus/config/species/lamprey
>>>>>>
>>>>>> For any additional training, make copies into
>>>>>> ?/augustus/config/species/lamprey2 and
>>>>>> ?/augustus/config/species/lamprey3
>>>>>>
>>>>>> Thanks,
>>>>>> Carson
>>>>>>
>>>>>>
>>>>>>
>>>>>> From:  Carson Holt <carsonhh at gmail.com>
>>>>>> Date:  Friday, 7 December, 2012 10:22 AM
>>>>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>>>>> "maker-devel at yandell-lab.org"
>>>>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>>>>> Subject:  Re: [maker-devel] AED score
>>>>>>
>>>>>> Just to add to Daniels comments.
>>>>>>
>>>>>> Things to change in step 1:
>>>>>>> protein= <just try and add more protein evidence in general>
>>>>>>> est2genome=0
>>>>>>> protein2genome=1
>>>>>>> split_hit=20000
>>>>>>> min_contig=50000
>>>>>>
>>>>>> Reasoning:
>>>>>>> Your ESTs are very short especially if this is a lamprey species
>>>>>>> which
>>>>>>> have
>>>>>>> very long introns and really short exons.  In lamprey (i.e.
>>>>>>> Petromyzon
>>>>>>> marinus), genes tend to be very long (remember gene lengths include
>>>>>>> introns
>>>>>>> and UTR and is not just the size of the coding sequence), so
>>>>>>> contigs
>>>>>>> shorter
>>>>>>> than 50kb are useless for training as you are unlikely to get nice
>>>>>>> complete
>>>>>>> gene models on those.  Also lampreys have very long introns, so you
>>>>>>> have
>>>>>>> to
>>>>>>> allow for bigger introns in alignments (split_hit parameter).
>>>>>>> Finally
>>>>>>> add as
>>>>>>> much protein evidence from as many sources as possible.  Your maker
>>>>>>> training
>>>>>>> run will take a long time as proteins take forever to align, but
>>>>>>> because
>>>>>>> of
>>>>>>> the evolutionary distance of lamprey from everything else and the
>>>>>>>short
>>>>>>> exon
>>>>>>> structure of its genome, very little aligns directly to its genome
>>>>>>>from
>>>>>>> other
>>>>>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>>>>>> species
>>>>>>> because of what you said about the  augustus species file you are
>>>>>>> using.
>>>>>>> Really the only thing closely related to lampreys unfortunately are
>>>>>>> other
>>>>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related
>>>>>>> to
>>>>>>> lamprey
>>>>>>> (while they branch closely together on the tree of life, there are
>>>>>>> too
>>>>>>> many
>>>>>>> years since the last common ancestor).  So while they may have
>>>>>>> similar
>>>>>>> issues
>>>>>>> related to annotation (long introns and short exons etc.) they will
>>>>>>>not
>>>>>>> really
>>>>>>> match that well for the gene predictor or even protein alignments.
>>>>>>
>>>>>> Additional note:
>>>>>>> I have training files for the lamprey species Petromyzon marinus
>>>>>>> for
>>>>>>> both
>>>>>>> Augustus and SNAP that I could share with you in a few week, when
>>>>>>>the
>>>>>>> genome
>>>>>>> publication is is released.  But before that happens, new gene
>>>>>>>models
>>>>>>> will be
>>>>>>> available  through the UCSC browser (hopefully within a couple of
>>>>>>> weeks), and
>>>>>>> gene models are already available through ENSEMBL.  Get those
>>>>>>>protein
>>>>>>> files
>>>>>>> for training, it may be a big help for you.  If you want early
>>>>>>>access
>>>>>>> to
>>>>>>> the
>>>>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>>>>request
>>>>>>> it
>>>>>>> from Weiming Li at Michigan State University (the head of that
>>>>>>>genome
>>>>>>> project).
>>>>>>>
>>>>>>
>>>>>>
>>>>>> Things to change in step 2:
>>>>>>> Optimally you would be doing de novo training using mRNAseq
>>>>>>> results,
>>>>>>> but
>>>>>>> with
>>>>>>> on;ly sparse protein alignments and such a fragmented assembly, you
>>>>>>>are
>>>>>>> probably better off just trying to adapt the human HMM files.  They
>>>>>>> won't
>>>>>>> match that well, but you probably won't have the evidence for De
>>>>>>>Novo
>>>>>>> training.  First make a copy of the augustus human species
>>>>>>> directory
>>>>>>> and
>>>>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>>>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>>>>>> retraining
>>>>>>> augustus using your new models.  You will have to edit multiple
>>>>>>>files
>>>>>>> in
>>>>>>> the
>>>>>>> directory after you copy it so that they no longer say human or
>>>>>>> homo
>>>>>>> sapiens
>>>>>>> internally or in the file name.  Use maker2zff to generate the
>>>>>>>filtered
>>>>>>> ZFF
>>>>>>> file for training SNAP, but don't train SNAP.  Rather use the
>>>>>>> training
>>>>>>> file to
>>>>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>>>>
>>>>>>> MAKE a backup of the step 1 maker output directory and run step 2
>>>>>>> in
>>>>>>> the
>>>>>>> old
>>>>>>> step 1 directory (this allows you to change the parameters and
>>>>>>> reuse
>>>>>>> files
>>>>>>> form step 1 so you don't have to recalculate all the protein and
>>>>>>> EST
>>>>>>> alignments).  So control files for step 2 are identical to step 1
>>>>>>> except
>>>>>>> for
>>>>>>> these parameters.
>>>>>>>
>>>>>>> protein2genome=0
>>>>>>> augustus_species=lamprey
>>>>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>>>>
>>>>>>> Don't both training SNAP here as you probably won't have enough
>>>>>>> data
>>>>>>> and
>>>>>>> you
>>>>>>> assembly is too fragmented for it to work well, so just stick to
>>>>>>> augustus.
>>>>>>> Try SNAP if you want just to see how well it works.  Manually open
>>>>>>>up
>>>>>>> the
>>>>>>> largest contigs in a viewer to look at the models produced from the
>>>>>>> MAKER run
>>>>>>> to see if they look reasonable (this will also help you decide
>>>>>>> whether
>>>>>>> to keep
>>>>>>> SNAP).
>>>>>>>
>>>>>>
>>>>>> Things to change in step 3:
>>>>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.
>>>>>>> But
>>>>>>> make
>>>>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>>>>> ?/augustus/config/species/lamprey2 (editing all the files and names
>>>>>>> as
>>>>>>> you did
>>>>>>> in step 2). This way you don't loose that training data if you
>>>>>>>decide
>>>>>>> to
>>>>>>> step
>>>>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>>>>
>>>>>>> augustus_species=lamprey2
>>>>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>>>>
>>>>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>>>>> (This
>>>>>>> is
>>>>>>> for file reuse, so the step will run fast).  This must be the exact
>>>>>>> same
>>>>>>> step
>>>>>>> directory as step 2 for the reuse trick to work.
>>>>>>>
>>>>>>> Manually review the models and if you are satisfied move to step 4.
>>>>>>> Also note
>>>>>>> that most parameters including the protein, EST, and repeats should
>>>>>>>not
>>>>>>> change
>>>>>>> from step1-step3, and should not be removed for step 4 either, you
>>>>>>> can
>>>>>>> add
>>>>>>> more evidence, but don't remove evidence (like the repeats).
>>>>>>>
>>>>>>>
>>>>>> Things to change in step 4:
>>>>>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>>>>>> step
>>>>>>> 3
>>>>>>> directory to get the smaller contigs annotated.  This should be
>>>>>>> your
>>>>>>> final
>>>>>>> step, although you can try altering other parameters or adding more
>>>>>>> evidence
>>>>>>> sources here etc.
>>>>>>>
>>>>>>>
>>>>>> For other things to keep in mind, you should consider taking extra
>>>>>> time
>>>>>> to
>>>>>> build a comprehensive library of repeats for your species, I know
>>>>>>that
>>>>>> Petromyzon marinus was virtually unannotatable until we had a very
>>>>>> deep
>>>>>> repeat library built for it.  Any repeat library should be used in
>>>>>>all
>>>>>> steps.  Also for lamprey, you will expect between 20,000-30,000
>>>>>> genes
>>>>>> both
>>>>>> because of your assemblies fragmentation and because of some
>>>>>>ancestral
>>>>>> genome duplication.  Also be aware that lampreys appear to undergo
>>>>>> programmed genome loss in somatic tissues, so any gene count you get
>>>>>> is
>>>>>> only
>>>>>> going to represent a maximum of 75-80% of all genes unless the
>>>>>> assembly
>>>>>> is
>>>>>> derived from germline tissue.
>>>>>>
>>>>>> Thanks,
>>>>>> Carson
>>>>>>
>>>>>>
>>>>>>>
>>>>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>
>>>>>>> Hi Parul,
>>>>>>>
>>>>>>> In step one, if protein2genome isn't turned on, then the protein
>>>>>>> alignments
>>>>>>> wont be used to generate gene models. Carson said before to use
>>>>>>> protein2genome
>>>>>>> to generate gene models for your trainings set, but you should know
>>>>>>> that
>>>>>>> those
>>>>>>> data aren't being used right now.
>>>>>>>
>>>>>>> In step 2, you can include the est and protein evidence that you
>>>>>>>used
>>>>>>> in
>>>>>>> step
>>>>>>> one, and the ab-initio predictors will takes those data as hints to
>>>>>>> guide
>>>>>>> their predictions. Also, are you reannotating human here? I'm just
>>>>>>> wondering
>>>>>>> why the snap file is called Pult, but the augustus species model is
>>>>>>> human.
>>>>>>> Also, I think you should include the same masking files from step
>>>>>>> 1,
>>>>>>> otherwise
>>>>>>> the ab-initio predictors will be predicting on the unmasked
>>>>>>> sequence
>>>>>>> which
>>>>>>> will give you many spurious predictions.
>>>>>>>
>>>>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>>>>control
>>>>>>> file
>>>>>>> you sent for step 3 will just pass-through all of the data from
>>>>>>>before.
>>>>>>>
>>>>>>> In step 4, I think what you'll get is pretty close to what you
>>>>>>> already
>>>>>>> had in
>>>>>>> step 3. The gene models from step 3 are already based on the est
>>>>>>> and
>>>>>>> protein
>>>>>>> data from step 1, so without giving any different evidence or
>>>>>>>ab-initio
>>>>>>> predictors, I think that you will just get the same gene models
>>>>>>> that
>>>>>>> you
>>>>>>> got
>>>>>>> from step 3. Those gene models are what you should be using to
>>>>>>> train
>>>>>>> snap.
>>>>>>> Also, is this the same genome as in the other steps? The genome
>>>>>>> file
>>>>>>> here is
>>>>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>>>>
>>>>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>>>>create
>>>>>>> models. If you don't give any evidence (EST or protein) maker will
>>>>>>> not
>>>>>>> annotate any gene models. You have also changed the augustus
>>>>>>> species
>>>>>>> model in
>>>>>>> this step, but I don't know what you've gained by going from one
>>>>>>> species
>>>>>>> to
>>>>>>> another. You should be training augustus with the gene models and
>>>>>>> then
>>>>>>> creating a new species model in augustus. As I understand it, the
>>>>>>> filter
>>>>>>> only
>>>>>>> operates on gene models, not ab-initio predictions or alignments,
>>>>>>> so
>>>>>>>it
>>>>>>> probably isn't doing anything the way you have it set.
>>>>>>>
>>>>>>> Step 6. I think step 5 and 6 should be combined. I don't know what
>>>>>>> you
>>>>>>> mean by
>>>>>>> boot-strapping here too.
>>>>>>>
>>>>>>> Hopefully that clears up some of the confusion with how maker
>>>>>>> works.
>>>>>>> Carson
>>>>>>> will probably have a lot of suggestions too.
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Daniel
>>>>>>>
>>>>>>> Daniel Ence
>>>>>>> Graduate Student
>>>>>>> Eccles Institute of Human Genetics
>>>>>>> University of Utah
>>>>>>> 15 North 2030 East, Room 2100
>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>> ________________________________________
>>>>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>>>>> To: carsonhh at gmail.com
>>>>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>
>>>>>>> Hi Carson,
>>>>>>>
>>>>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>>>>> 30,000
>>>>>>> genes.
>>>>>>> Here are the step
>>>>>>> Step1. EST and proteins are used to predict gene-models. the
>>>>>>> resulting
>>>>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>>>>> turned
>>>>>>> ON
>>>>>>> Step2. Augustus and SNAP is used to predict genes.
>>>>>>> Step3. The results are re-annoated(boot-strap)
>>>>>>> Step4. EST and proteins are used to predict gene-models. The gff
>>>>>>>file
>>>>>>> from
>>>>>>> step3. is used as model_gff. The resulting file is used as training
>>>>>>> data-set for SNAP in step2
>>>>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to
>>>>>>>0.5
>>>>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5
>>>>>>> and
>>>>>>> contig_size to 10kb
>>>>>>>
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>
>>>>>>> I have attached the configuration file for each step.
>>>>>>>>  Your output has no genes.  They've all been filtered out.  The
>>>>>>>>gene
>>>>>>> predictions are left for reference purposes, but there are no gene
>>>>>>> models
>>>>>>>>  in the file.  You need to look at the type columns in the GFF3
>>>>>>>>file
>>>>>>>> -->
>>>>>>> match/match_part features are evidence and reference data but not
>>>>>>> models.
>>>>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if
>>>>>>>> you
>>>>>>>> just
>>>>>>> want gene models in your file you can use the gff3_merge script
>>>>>>> with
>>>>>>> the
>>>>>>> -g option, and it will only print out the gene models.
>>>>>>>>  I think you may be misinterpreting what is happening at different
>>>>>>>> steps,
>>>>>>> as well as how to read the result files.  Could you give me a
>>>>>>> detailed
>>>>>>> explanation of what you expect to get back together with your
>>>>>>>control
>>>>>>> files and I can walk you through the configuration, and indicate
>>>>>>>what
>>>>>>> to
>>>>>>> expect.  Also what was the report like from CEGMA. Could you
>>>>>>> include
>>>>>>> the
>>>>>>> report file that shows how complete your genome is and how
>>>>>>>fragmented
>>>>>>> it
>>>>>>> is?
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>>> Dear Carson,
>>>>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>>>>> Though for previous step(ab-intio gene predictions keep_preds was
>>>>>>>>>set
>>>>>>>>> to
>>>>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>>>>> Scaffold1_out.gff.
>>>>>>>>> Please advice.
>>>>>>>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>  You should always get all predictions, but should only get
>>>>>>>>>>models
>>>>>>> (match/match_part) with AED scores less than 0.5.  You should never
>>>>>>>get
>>>>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you
>>>>>>>>>> have
>>>>>>> keep_preds set.
>>>>>>>>>>  Do you have keeps_preds set or gene models with AED values
>>>>>>>>>> above
>>>>>>>>>> your
>>>>>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>>>>> case,
>>>>>>>>>>  just set it to 0.  If the second one in the case, could you
>>>>>>>>>> send
>>>>>>>>>>me
>>>>>>> example GFF3?
>>>>>>>>>>  Thanks,
>>>>>>>>>>  Carson
>>>>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>>> Dear Carson,
>>>>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>>>>> short
>>>>>>>>>>>  ESTs.
>>>>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>>>>> prediction(used as training dataset)and abinitio
>>>>>>>>>>> gene-prediction).
>>>>>>> Here
>>>>>>>>>>> are the control parameters I am using with AED score set to
>>>>>>>>>>> 0.5,
>>>>>>>>>>>  however
>>>>>>>>>>>  I
>>>>>>>>>>> get predictions that includes the ones with AED score of 1.00
>>>>>>>>>>> in
>>>>>>>>>>>  resulting
>>>>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3
>>>>>>>>>>> of
>>>>>>>>>>>  initial
>>>>>>>>>>> gff3 file.
>>>>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>>>>>  eukaryotic
>>>>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this
>>>>>>>>>>> gff3
>>>>>>>>>>> file
>>>>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 =
>>>>>>>>>>> yes,
>>>>>>>>>>> 0
>>>>>>>>>>> =
>>>>>>> no
>>>>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes,
>>>>>>>>>>> 0
>>>>>>>>>>> =
>>>>>>>>>>> no
>>>>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0
>>>>>>>=
>>>>>>>>>>>  no
>>>>>>>>>>> #-----MAKER Behavior Options
>>>>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed
>>>>>>>>>>> (bound
>>>>>>>>>>> by
>>>>>>> 0
>>>>>>>>>>> and 1)
>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to
>>>>>>>>>>>>be
>>>>>>>>>>>> partial
>>>>>>>>>>>> at
>>>>>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>>>>>> those
>>>>>>> by
>>>>>>>>>>>>  using maker's est_gff option to pass in results from
>>>>>>>>>>>> cufflinks
>>>>>>>>>>>>or
>>>>>>>>>>>> trinity.
>>>>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb
>>>>>>>>>>>>in
>>>>>>> size,
>>>>>>>>>>>> just
>>>>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>>>>> maker_opts.ctl file.
>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>  Carson
>>>>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>>>>with
>>>>>>> N50
>>>>>>>>>>>>>  of
>>>>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>>>>> reason
>>>>>>>>>>>>>  when
>>>>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>>>>> predicted
>>>>>>> despite the model_gff file has few genes with scores less than
>>>>>>> 0.75?
>>>>>>> Thanks and regards,
>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>>>>> contig.
>>>>>>>>>>>>> First
>>>>>>>>>>>>>  it seems to be repeat rich with a very low gene density.
>>>>>>>>>>>>> You
>>>>>>>>>>>>> also
>>>>>>>>>>>>> have
>>>>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>>>>> getting
>>>>>>> many
>>>>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>>>>> models
>>>>>>> that
>>>>>>>>>>>>> are
>>>>>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>>>>>> piece
>>>>>>>>>>>>> of
>>>>>>>>>>>>> a
>>>>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>>>>reason
>>>>>>>>>>>>>  unless
>>>>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).
>>>>>>>>>>>>> Your
>>>>>>>>>>>>>  protein
>>>>>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>>>>>> need
>>>>>>> to
>>>>>>>>>>>>> add
>>>>>>>>>>>>>  more proteins from a couple of related species, and you
>>>>>>>>>>>>> might
>>>>>>> consider
>>>>>>>>>>>>> using protein2genome rather than est2genome as a predictor if
>>>>>>>>>>>>>you
>>>>>>> are
>>>>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>>>>> produced
>>>>>>> models
>>>>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>>>>with
>>>>>>> the
>>>>>>>>>>>>> AED_threshold with such limited protein support does create
>>>>>>>>>>>>> an
>>>>>>> artificial
>>>>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>>>>  How many contigs do you have in total and what is the N50
>>>>>>>>>>>>> value
>>>>>>> for
>>>>>>>>>>>>> the
>>>>>>>>>>>>> assembly? If you have a large number of very short contigs,
>>>>>>>>>>>>>you
>>>>>>>>>>>>> will
>>>>>>>>>>>>>  get
>>>>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>>>>> contigs
>>>>>>>>>>>>>  and
>>>>>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>>>>>> just
>>>>>>> assembled in a slightly different way (so you can get bits and
>>>>>>> pieces
>>>>>>>>>>>>>  of
>>>>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>>>>  confounding
>>>>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>>>>> would
>>>>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>>>>  completeness
>>>>>>>>>>>>> as
>>>>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>>>>> statistics
>>>>>>>>>>>>> produced
>>>>>>>>>>>>>  is a percent of genes that are found complete (end to end)
>>>>>>>>>>>>> vs
>>>>>>> those
>>>>>>>>>>>>>  that
>>>>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend
>>>>>>>>>>>>>to
>>>>>>>>>>>>> be
>>>>>>> shorter
>>>>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>>>>CEGMA
>>>>>>> gives
>>>>>>>>>>>>>  a
>>>>>>>>>>>>> high partial percentage and a low complete percentage, then
>>>>>>>>>>>>> this
>>>>>>>>>>>>>  pattern
>>>>>>>>>>>>> can be expected to be even more exaggerated for other genes
>>>>>>>>>>>>> in
>>>>>>>>>>>>> the
>>>>>>> genome.
>>>>>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>>>>>> well
>>>>>>> then
>>>>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>>>>genomes
>>>>>>> end
>>>>>>>>>>>>>  up
>>>>>>>>>>>>> having extremely fragmented assemblies (on the order of
>>>>>>>>>>>>>100,000
>>>>>>> contigs),
>>>>>>>>>>>>>  and if they are distantly related to other annotated species
>>>>>>>>>>>>>few
>>>>>>>>>>>>> proteins
>>>>>>>>>>>>>  may align to the contigs because the introns in the
>>>>>>>>>>>>>alignments
>>>>>>> tend
>>>>>>>>>>>>>  to
>>>>>>>>>>>>> be
>>>>>>>>>>>>>  so long and exons so short that it pushes down the
>>>>>>>>>>>>> significance
>>>>>>> scores
>>>>>>>>>>>>> too
>>>>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if
>>>>>>>>>>>>> not
>>>>>>> only
>>>>>>>>>>>>>  way
>>>>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>>>score.
>>>>>>> The
>>>>>>>>>>>>> input gff3 file was provided to option model_pred(see
>>>>>>>>>>>>> attached
>>>>>>>>>>>>> file
>>>>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>>>>  least
>>>>>>>>>>>>>  5
>>>>>>>>>>>>> genes with AED score less than 0.75. However there were no
>>>>>>>>>>>>> genes
>>>>>>>>>>>>>  predicted
>>>>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have
>>>>>>>>>>>>> also
>>>>>>>>>>>>> attached
>>>>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if
>>>>>>>>>>>>>you
>>>>>>>>>>>>> just
>>>>>>>>>>>>> want
>>>>>>>>>>>>>  to restrict final gene models to close matches directly
>>>>>>>>>>>>>within
>>>>>>>>>>>>> maker.
>>>>>>>>>>>>> On
>>>>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>>>>> training
>>>>>>>>>>>>>  gene
>>>>>>>>>>>>> predictors, use the maker2zff script for generating a
>>>>>>>>>>>>> filtered
>>>>>>>>>>>>>  dataset
>>>>>>>>>>>>> for
>>>>>>>>>>>>>  SNAP training.  There are a number of filters available.
>>>>>>>>>>>>> Just
>>>>>>> call
>>>>>>>>>>>>>  the
>>>>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>> Hi Parul,
>>>>>>>>>>>>> I think the way you described (with the maker_opts.ctl file)
>>>>>>>>>>>>>is
>>>>>>> how
>>>>>>>>>>>>> you
>>>>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>>>>> Daniel
>>>>>>>>>>>>> Daniel Ence
>>>>>>>>>>>>> Graduate Student
>>>>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>>>>> University of Utah
>>>>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>>>>> ________________________________________
>>>>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>>>  Kudtarkar
>>>>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>>>>> Also, are there any other parameters that are required when
>>>>>>> filtering
>>>>>>>>>>>>> based on AED score?
>>>>>>>>>>>>>  Hello Carson,
>>>>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>>>>> models
>>>>>>>>>>>>> at
>>>>>>>>>>>>> specific AED score.
>>>>>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>>>>>> to
>>>>>>>>>>>>> parameters
>>>>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>> genes
>>>>>>>>>>>>> gff3
>>>>>>>>>>>>>  file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>>threshold?
>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>>>>>> 1
>>>>>>>>>>>>>  is
>>>>>>>>>>>>> worst
>>>>>>>>>>>>>  as
>>>>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>>>>> parameter
>>>>>>>>>>>>> to
>>>>>>>>>>>>>  require better matching to the evidence by setting it closer
>>>>>>> to
>>>>>>>>>>>>> 0.
>>>>>>>>>>>>> You
>>>>>>>>>>>>>  can
>>>>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>>>>> your
>>>>>>>>>>>>> calls
>>>>>>>>>>>>> may
>>>>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>>>>  --Carson
>>>>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>> Dear Maker community,
>>>>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>  based
>>>>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>>>>Augustus
>>>>>>> predictions, followed by boot-strapping. I would typically expect
>>>>>>> 20-30K
>>>>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>  indicating
>>>>>>>>>>>>>  too
>>>>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>>>>> predication/script to retain predictions with AED score 1 and
>>>>>>>>>>>>> if
>>>>>>>>>>>>> yes
>>>>>>>>>>>>> how
>>>>>>>>>>>>> to go about this?
>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>> -l
>>>>>>>>>>>>> ab
>>>>>>>>>>>>> .o
>>>>>>>>>>>>> rg
>>>>>>>>>>>>>  --
>>>>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>>-l
>>>>>>>>>>>>>a
>>>>>>> b.
>>>>>>>>>>>>> or
>>>>>>>>>>>>> g
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>>-l
>>>>>>>>>>>>>a
>>>>>>> b.
>>>>>>>>>>>>> or
>>>>>>>>>>>>> g
>>>>>>>>>>>>>  _______________________________________________
>>>>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>>>>>
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>>-l
>>>>>>>>>>>>>ab
>>>>>>> .o
>>>>>>>>>>>>> rg
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>>
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>>>>
>>>>
>>>>
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>>>
>>>
>>>
>>>
>>
>>
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From carsonhh at gmail.com  Fri Dec 14 15:17:55 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 14 Dec 2012 16:17:55 -0500
Subject: [maker-devel] AED score
In-Reply-To: <4575.131.215.15.234.1355437013.squirrel@webmail.caltech.edu>
Message-ID: <CCF100EF.170E7%carsonhh@gmail.com>

You can either train with cegma first and then train a second time with
the protein2genome calls, or combine the cegma and protein2genome ZFF
files (from maker2zff and cegma2zff), then use that one file to generate
the training data for augustus.  Augustus allows you to keep training, so
rather than training a new species each time, you can specify an existing
species you trained before, and then refine the existing model using the
additional training data.

--Carson



On 12-12-13 5:16 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Carson,
>
>Could you please advice how to combine results from protein2genome
>derived models and cegma based training to be provided as training species
>for augustus or are theses supposed to be run as separate maker2 run(i.e.
>run maker2 with training set from protein2genome first followed by
>cegma-based training set)
>
>Thanks and regards,
>Parul
>
>> Thanks Parul.  If you need any more help, just let us know.
>>
>> --Carson
>>
>>
>>
>> On 12-12-10 10:28 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>
>>>Dear Carson, Thanks a lot for detailed explanation and all the help with
>>>running and understanding maker2.
>>>
>>>
>>>> Yes.  Lamprey is not a good match for sea urchin.  When training
>>>>Augusuts
>>>> you can sometimes use other genomes as starting points and let
>>>>Augustus
>>>> then modify that species to match the models you provided, which can
>>>>be
>>>> better than de novo training under certain circumstances. But given
>>>>sea
>>>> urchin's evolutionary distance from all the other species bundled with
>>>> augustus, its probably not a good starting point.  So protein2genome
>>>> derived models and cegma based training are probably your best
>>>>options.
>>>>
>>>> --Carson
>>>>
>>>>
>>>> On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>
>>>>>Sorry for not checking this before, just to answer my own question I
>>>>>just
>>>>>found after reading augustus documentation that autoAugTrain.pl should
>>>>>work for generating training dataset for Augustus from using the
>>>>>gene-model hints from first pass run of maker and using
>>>>>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script
>>>>> to
>>>>>generate training.gb
>>>>>
>>>>>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>>>>>
>>>>>I believe should work better than using lamprey to train augustus.
>>>>>
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>
>>>>>> Dear Carson,
>>>>>>
>>>>>> Thanks for detailed explanation and help. Now we know the exact
>>>>>>parameters
>>>>>> that should help us with generating good gene-model.
>>>>>>
>>>>>> The genome for which we are working on gene predictions is
>>>>>> Echinoderm(sea-urchin). lamprey was the closest organism for
>>>>>>training
>>>>>> augustus that I could find. A quick question for training augustus,
>>>>>>there
>>>>>> is augustus_species option how would you go from training data
>>>>>> generated
>>>>>> by zff2augustus_gbk.pl > train.gb as specified here
>>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>>>>>> generating the species folder that can be specified to
>>>>>>augustus_species
>>>>>> option.
>>>>>>
>>>>>> The average expected gene-length in our case is ~15kb.
>>>>>> We also have a good repeat library for our genome.
>>>>>>
>>>>>> Thanks and regards,
>>>>>> Parul Kudtarkar
>>>>>>
>>>>>>> For step 2 and 3, use lamprey rather than human in augustus.  For
>>>>>>>some
>>>>>>> reason the current version of augustus doesn't diplay it as an
>>>>>>> option
>>>>>>> for
>>>>>>> the species help menu (so I didn't see it), but it's there in
>>>>>>> ?/augustus/config/species/lamprey
>>>>>>>
>>>>>>> For any additional training, make copies into
>>>>>>> ?/augustus/config/species/lamprey2 and
>>>>>>> ?/augustus/config/species/lamprey3
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> From:  Carson Holt <carsonhh at gmail.com>
>>>>>>> Date:  Friday, 7 December, 2012 10:22 AM
>>>>>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>>>>>> "maker-devel at yandell-lab.org"
>>>>>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>>>>>> Subject:  Re: [maker-devel] AED score
>>>>>>>
>>>>>>> Just to add to Daniels comments.
>>>>>>>
>>>>>>> Things to change in step 1:
>>>>>>>> protein= <just try and add more protein evidence in general>
>>>>>>>> est2genome=0
>>>>>>>> protein2genome=1
>>>>>>>> split_hit=20000
>>>>>>>> min_contig=50000
>>>>>>>
>>>>>>> Reasoning:
>>>>>>>> Your ESTs are very short especially if this is a lamprey species
>>>>>>>> which
>>>>>>>> have
>>>>>>>> very long introns and really short exons.  In lamprey (i.e.
>>>>>>>> Petromyzon
>>>>>>>> marinus), genes tend to be very long (remember gene lengths
>>>>>>>>include
>>>>>>>> introns
>>>>>>>> and UTR and is not just the size of the coding sequence), so
>>>>>>>> contigs
>>>>>>>> shorter
>>>>>>>> than 50kb are useless for training as you are unlikely to get nice
>>>>>>>> complete
>>>>>>>> gene models on those.  Also lampreys have very long introns, so
>>>>>>>>you
>>>>>>>> have
>>>>>>>> to
>>>>>>>> allow for bigger introns in alignments (split_hit parameter).
>>>>>>>> Finally
>>>>>>>> add as
>>>>>>>> much protein evidence from as many sources as possible.  Your
>>>>>>>>maker
>>>>>>>> training
>>>>>>>> run will take a long time as proteins take forever to align, but
>>>>>>>> because
>>>>>>>> of
>>>>>>>> the evolutionary distance of lamprey from everything else and the
>>>>>>>>short
>>>>>>>> exon
>>>>>>>> structure of its genome, very little aligns directly to its genome
>>>>>>>>from
>>>>>>>> other
>>>>>>>> deuterstome and vertebrate species.  I'm assuming this is a
>>>>>>>>lamprey
>>>>>>>> species
>>>>>>>> because of what you said about the  augustus species file you are
>>>>>>>> using.
>>>>>>>> Really the only thing closely related to lampreys unfortunately
>>>>>>>>are
>>>>>>>> other
>>>>>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related
>>>>>>>> to
>>>>>>>> lamprey
>>>>>>>> (while they branch closely together on the tree of life, there are
>>>>>>>> too
>>>>>>>> many
>>>>>>>> years since the last common ancestor).  So while they may have
>>>>>>>> similar
>>>>>>>> issues
>>>>>>>> related to annotation (long introns and short exons etc.) they
>>>>>>>>will
>>>>>>>>not
>>>>>>>> really
>>>>>>>> match that well for the gene predictor or even protein alignments.
>>>>>>>
>>>>>>> Additional note:
>>>>>>>> I have training files for the lamprey species Petromyzon marinus
>>>>>>>> for
>>>>>>>> both
>>>>>>>> Augustus and SNAP that I could share with you in a few week, when
>>>>>>>>the
>>>>>>>> genome
>>>>>>>> publication is is released.  But before that happens, new gene
>>>>>>>>models
>>>>>>>> will be
>>>>>>>> available  through the UCSC browser (hopefully within a couple of
>>>>>>>> weeks), and
>>>>>>>> gene models are already available through ENSEMBL.  Get those
>>>>>>>>protein
>>>>>>>> files
>>>>>>>> for training, it may be a big help for you.  If you want early
>>>>>>>>access
>>>>>>>> to
>>>>>>>> the
>>>>>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>>>>>request
>>>>>>>> it
>>>>>>>> from Weiming Li at Michigan State University (the head of that
>>>>>>>>genome
>>>>>>>> project).
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Things to change in step 2:
>>>>>>>> Optimally you would be doing de novo training using mRNAseq
>>>>>>>> results,
>>>>>>>> but
>>>>>>>> with
>>>>>>>> on;ly sparse protein alignments and such a fragmented assembly,
>>>>>>>>you
>>>>>>>>are
>>>>>>>> probably better off just trying to adapt the human HMM files.
>>>>>>>>They
>>>>>>>> won't
>>>>>>>> match that well, but you probably won't have the evidence for De
>>>>>>>>Novo
>>>>>>>> training.  First make a copy of the augustus human species
>>>>>>>> directory
>>>>>>>> and
>>>>>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>>>>>> ?/augustus/config/species/lamprey).  Use it as the base species
>>>>>>>>for
>>>>>>>> retraining
>>>>>>>> augustus using your new models.  You will have to edit multiple
>>>>>>>>files
>>>>>>>> in
>>>>>>>> the
>>>>>>>> directory after you copy it so that they no longer say human or
>>>>>>>> homo
>>>>>>>> sapiens
>>>>>>>> internally or in the file name.  Use maker2zff to generate the
>>>>>>>>filtered
>>>>>>>> ZFF
>>>>>>>> file for training SNAP, but don't train SNAP.  Rather use the
>>>>>>>> training
>>>>>>>> file to
>>>>>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>>>>>
>>>>>>>> MAKE a backup of the step 1 maker output directory and run step 2
>>>>>>>> in
>>>>>>>> the
>>>>>>>> old
>>>>>>>> step 1 directory (this allows you to change the parameters and
>>>>>>>> reuse
>>>>>>>> files
>>>>>>>> form step 1 so you don't have to recalculate all the protein and
>>>>>>>> EST
>>>>>>>> alignments).  So control files for step 2 are identical to step 1
>>>>>>>> except
>>>>>>>> for
>>>>>>>> these parameters.
>>>>>>>>
>>>>>>>> protein2genome=0
>>>>>>>> augustus_species=lamprey
>>>>>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>>>>>
>>>>>>>> Don't both training SNAP here as you probably won't have enough
>>>>>>>> data
>>>>>>>> and
>>>>>>>> you
>>>>>>>> assembly is too fragmented for it to work well, so just stick to
>>>>>>>> augustus.
>>>>>>>> Try SNAP if you want just to see how well it works.  Manually open
>>>>>>>>up
>>>>>>>> the
>>>>>>>> largest contigs in a viewer to look at the models produced from
>>>>>>>>the
>>>>>>>> MAKER run
>>>>>>>> to see if they look reasonable (this will also help you decide
>>>>>>>> whether
>>>>>>>> to keep
>>>>>>>> SNAP).
>>>>>>>>
>>>>>>>
>>>>>>> Things to change in step 3:
>>>>>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.
>>>>>>>> But
>>>>>>>> make
>>>>>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>>>>>> ?/augustus/config/species/lamprey2 (editing all the files and
>>>>>>>>names
>>>>>>>> as
>>>>>>>> you did
>>>>>>>> in step 2). This way you don't loose that training data if you
>>>>>>>>decide
>>>>>>>> to
>>>>>>>> step
>>>>>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>>>>>
>>>>>>>> augustus_species=lamprey2
>>>>>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>>>>>
>>>>>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>>>>>> (This
>>>>>>>> is
>>>>>>>> for file reuse, so the step will run fast).  This must be the
>>>>>>>>exact
>>>>>>>> same
>>>>>>>> step
>>>>>>>> directory as step 2 for the reuse trick to work.
>>>>>>>>
>>>>>>>> Manually review the models and if you are satisfied move to step
>>>>>>>>4.
>>>>>>>> Also note
>>>>>>>> that most parameters including the protein, EST, and repeats
>>>>>>>>should
>>>>>>>>not
>>>>>>>> change
>>>>>>>> from step1-step3, and should not be removed for step 4 either, you
>>>>>>>> can
>>>>>>>> add
>>>>>>>> more evidence, but don't remove evidence (like the repeats).
>>>>>>>>
>>>>>>>>
>>>>>>> Things to change in step 4:
>>>>>>>> For this step, just set min_contig=10000 and rerun MAKER inside
>>>>>>>>the
>>>>>>>> step
>>>>>>>> 3
>>>>>>>> directory to get the smaller contigs annotated.  This should be
>>>>>>>> your
>>>>>>>> final
>>>>>>>> step, although you can try altering other parameters or adding
>>>>>>>>more
>>>>>>>> evidence
>>>>>>>> sources here etc.
>>>>>>>>
>>>>>>>>
>>>>>>> For other things to keep in mind, you should consider taking extra
>>>>>>> time
>>>>>>> to
>>>>>>> build a comprehensive library of repeats for your species, I know
>>>>>>>that
>>>>>>> Petromyzon marinus was virtually unannotatable until we had a very
>>>>>>> deep
>>>>>>> repeat library built for it.  Any repeat library should be used in
>>>>>>>all
>>>>>>> steps.  Also for lamprey, you will expect between 20,000-30,000
>>>>>>> genes
>>>>>>> both
>>>>>>> because of your assemblies fragmentation and because of some
>>>>>>>ancestral
>>>>>>> genome duplication.  Also be aware that lampreys appear to undergo
>>>>>>> programmed genome loss in somatic tissues, so any gene count you
>>>>>>>get
>>>>>>> is
>>>>>>> only
>>>>>>> going to represent a maximum of 75-80% of all genes unless the
>>>>>>> assembly
>>>>>>> is
>>>>>>> derived from germline tissue.
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>>
>>>>>>>
>>>>>>>>
>>>>>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>>
>>>>>>>> Hi Parul,
>>>>>>>>
>>>>>>>> In step one, if protein2genome isn't turned on, then the protein
>>>>>>>> alignments
>>>>>>>> wont be used to generate gene models. Carson said before to use
>>>>>>>> protein2genome
>>>>>>>> to generate gene models for your trainings set, but you should
>>>>>>>>know
>>>>>>>> that
>>>>>>>> those
>>>>>>>> data aren't being used right now.
>>>>>>>>
>>>>>>>> In step 2, you can include the est and protein evidence that you
>>>>>>>>used
>>>>>>>> in
>>>>>>>> step
>>>>>>>> one, and the ab-initio predictors will takes those data as hints
>>>>>>>>to
>>>>>>>> guide
>>>>>>>> their predictions. Also, are you reannotating human here? I'm just
>>>>>>>> wondering
>>>>>>>> why the snap file is called Pult, but the augustus species model
>>>>>>>>is
>>>>>>>> human.
>>>>>>>> Also, I think you should include the same masking files from step
>>>>>>>> 1,
>>>>>>>> otherwise
>>>>>>>> the ab-initio predictors will be predicting on the unmasked
>>>>>>>> sequence
>>>>>>>> which
>>>>>>>> will give you many spurious predictions.
>>>>>>>>
>>>>>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>>>>>control
>>>>>>>> file
>>>>>>>> you sent for step 3 will just pass-through all of the data from
>>>>>>>>before.
>>>>>>>>
>>>>>>>> In step 4, I think what you'll get is pretty close to what you
>>>>>>>> already
>>>>>>>> had in
>>>>>>>> step 3. The gene models from step 3 are already based on the est
>>>>>>>> and
>>>>>>>> protein
>>>>>>>> data from step 1, so without giving any different evidence or
>>>>>>>>ab-initio
>>>>>>>> predictors, I think that you will just get the same gene models
>>>>>>>> that
>>>>>>>> you
>>>>>>>> got
>>>>>>>> from step 3. Those gene models are what you should be using to
>>>>>>>> train
>>>>>>>> snap.
>>>>>>>> Also, is this the same genome as in the other steps? The genome
>>>>>>>> file
>>>>>>>> here is
>>>>>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>>>>>
>>>>>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>>>>>create
>>>>>>>> models. If you don't give any evidence (EST or protein) maker will
>>>>>>>> not
>>>>>>>> annotate any gene models. You have also changed the augustus
>>>>>>>> species
>>>>>>>> model in
>>>>>>>> this step, but I don't know what you've gained by going from one
>>>>>>>> species
>>>>>>>> to
>>>>>>>> another. You should be training augustus with the gene models and
>>>>>>>> then
>>>>>>>> creating a new species model in augustus. As I understand it, the
>>>>>>>> filter
>>>>>>>> only
>>>>>>>> operates on gene models, not ab-initio predictions or alignments,
>>>>>>>> so
>>>>>>>>it
>>>>>>>> probably isn't doing anything the way you have it set.
>>>>>>>>
>>>>>>>> Step 6. I think step 5 and 6 should be combined. I don't know what
>>>>>>>> you
>>>>>>>> mean by
>>>>>>>> boot-strapping here too.
>>>>>>>>
>>>>>>>> Hopefully that clears up some of the confusion with how maker
>>>>>>>> works.
>>>>>>>> Carson
>>>>>>>> will probably have a lot of suggestions too.
>>>>>>>>
>>>>>>>> Thanks,
>>>>>>>> Daniel
>>>>>>>>
>>>>>>>> Daniel Ence
>>>>>>>> Graduate Student
>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>> University of Utah
>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>> ________________________________________
>>>>>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>>>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>>>>>> To: carsonhh at gmail.com
>>>>>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>
>>>>>>>> Hi Carson,
>>>>>>>>
>>>>>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>>>>>> 30,000
>>>>>>>> genes.
>>>>>>>> Here are the step
>>>>>>>> Step1. EST and proteins are used to predict gene-models. the
>>>>>>>> resulting
>>>>>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>>>>>> turned
>>>>>>>> ON
>>>>>>>> Step2. Augustus and SNAP is used to predict genes.
>>>>>>>> Step3. The results are re-annoated(boot-strap)
>>>>>>>> Step4. EST and proteins are used to predict gene-models. The gff
>>>>>>>>file
>>>>>>>> from
>>>>>>>> step3. is used as model_gff. The resulting file is used as
>>>>>>>>training
>>>>>>>> data-set for SNAP in step2
>>>>>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set
>>>>>>>>to
>>>>>>>>0.5
>>>>>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5
>>>>>>>> and
>>>>>>>> contig_size to 10kb
>>>>>>>>
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>
>>>>>>>> I have attached the configuration file for each step.
>>>>>>>>>  Your output has no genes.  They've all been filtered out.  The
>>>>>>>>>gene
>>>>>>>> predictions are left for reference purposes, but there are no gene
>>>>>>>> models
>>>>>>>>>  in the file.  You need to look at the type columns in the GFF3
>>>>>>>>>file
>>>>>>>>> -->
>>>>>>>> match/match_part features are evidence and reference data but not
>>>>>>>> models.
>>>>>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if
>>>>>>>>> you
>>>>>>>>> just
>>>>>>>> want gene models in your file you can use the gff3_merge script
>>>>>>>> with
>>>>>>>> the
>>>>>>>> -g option, and it will only print out the gene models.
>>>>>>>>>  I think you may be misinterpreting what is happening at
>>>>>>>>>different
>>>>>>>>> steps,
>>>>>>>> as well as how to read the result files.  Could you give me a
>>>>>>>> detailed
>>>>>>>> explanation of what you expect to get back together with your
>>>>>>>>control
>>>>>>>> files and I can walk you through the configuration, and indicate
>>>>>>>>what
>>>>>>>> to
>>>>>>>> expect.  Also what was the report like from CEGMA. Could you
>>>>>>>> include
>>>>>>>> the
>>>>>>>> report file that shows how complete your genome is and how
>>>>>>>>fragmented
>>>>>>>> it
>>>>>>>> is?
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>>> Dear Carson,
>>>>>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>>>>>> Though for previous step(ab-intio gene predictions keep_preds
>>>>>>>>>>was
>>>>>>>>>>set
>>>>>>>>>> to
>>>>>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>>>>>> Scaffold1_out.gff.
>>>>>>>>>> Please advice.
>>>>>>>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>  You should always get all predictions, but should only get
>>>>>>>>>>>models
>>>>>>>> (match/match_part) with AED scores less than 0.5.  You should
>>>>>>>>never
>>>>>>>>get
>>>>>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you
>>>>>>>>>>> have
>>>>>>>> keep_preds set.
>>>>>>>>>>>  Do you have keeps_preds set or gene models with AED values
>>>>>>>>>>> above
>>>>>>>>>>> your
>>>>>>>> threshold (not match/match_part features)?  If the first one is
>>>>>>>>the
>>>>>>>>>>> case,
>>>>>>>>>>>  just set it to 0.  If the second one in the case, could you
>>>>>>>>>>> send
>>>>>>>>>>>me
>>>>>>>> example GFF3?
>>>>>>>>>>>  Thanks,
>>>>>>>>>>>  Carson
>>>>>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>>> Dear Carson,
>>>>>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>>>>>> short
>>>>>>>>>>>>  ESTs.
>>>>>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>>>>>> prediction(used as training dataset)and abinitio
>>>>>>>>>>>> gene-prediction).
>>>>>>>> Here
>>>>>>>>>>>> are the control parameters I am using with AED score set to
>>>>>>>>>>>> 0.5,
>>>>>>>>>>>>  however
>>>>>>>>>>>>  I
>>>>>>>>>>>> get predictions that includes the ones with AED score of 1.00
>>>>>>>>>>>> in
>>>>>>>>>>>>  resulting
>>>>>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3
>>>>>>>>>>>> of
>>>>>>>>>>>>  initial
>>>>>>>>>>>> gff3 file.
>>>>>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default
>>>>>>>>>>>>is
>>>>>>>>>>>>  eukaryotic
>>>>>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this
>>>>>>>>>>>> gff3
>>>>>>>>>>>> file
>>>>>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 =
>>>>>>>>>>>> yes,
>>>>>>>>>>>> 0
>>>>>>>>>>>> =
>>>>>>>> no
>>>>>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes,
>>>>>>>>>>>> 0
>>>>>>>>>>>> =
>>>>>>>>>>>> no
>>>>>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes,
>>>>>>>>0
>>>>>>>>=
>>>>>>>>>>>>  no
>>>>>>>>>>>> #-----MAKER Behavior Options
>>>>>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed
>>>>>>>>>>>> (bound
>>>>>>>>>>>> by
>>>>>>>> 0
>>>>>>>>>>>> and 1)
>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to
>>>>>>>>>>>>>be
>>>>>>>>>>>>> partial
>>>>>>>>>>>>> at
>>>>>>>>>>>>>  best.  You should seriously consider using mRNAseq to
>>>>>>>>>>>>>capture
>>>>>>>>>>>>> those
>>>>>>>> by
>>>>>>>>>>>>>  using maker's est_gff option to pass in results from
>>>>>>>>>>>>> cufflinks
>>>>>>>>>>>>>or
>>>>>>>>>>>>> trinity.
>>>>>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb
>>>>>>>>>>>>>in
>>>>>>>> size,
>>>>>>>>>>>>> just
>>>>>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>>>>>> maker_opts.ctl file.
>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>>>>>with
>>>>>>>> N50
>>>>>>>>>>>>>>  of
>>>>>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>>>>>> reason
>>>>>>>>>>>>>>  when
>>>>>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>>>>>> predicted
>>>>>>>> despite the model_gff file has few genes with scores less than
>>>>>>>> 0.75?
>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>>>>>> contig.
>>>>>>>>>>>>>> First
>>>>>>>>>>>>>>  it seems to be repeat rich with a very low gene density.
>>>>>>>>>>>>>> You
>>>>>>>>>>>>>> also
>>>>>>>>>>>>>> have
>>>>>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>>>>>> getting
>>>>>>>> many
>>>>>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>>>>>> models
>>>>>>>> that
>>>>>>>>>>>>>> are
>>>>>>>>>>>>>>  more than likely false positives or at the very least just
>>>>>>>>>>>>>>a
>>>>>>>>>>>>>> piece
>>>>>>>>>>>>>> of
>>>>>>>>>>>>>> a
>>>>>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>>>>>reason
>>>>>>>>>>>>>>  unless
>>>>>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).
>>>>>>>>>>>>>> Your
>>>>>>>>>>>>>>  protein
>>>>>>>>>>>>>> alignments also seem to be few and far between.  You
>>>>>>>>>>>>>>probably
>>>>>>>>>>>>>> need
>>>>>>>> to
>>>>>>>>>>>>>> add
>>>>>>>>>>>>>>  more proteins from a couple of related species, and you
>>>>>>>>>>>>>> might
>>>>>>>> consider
>>>>>>>>>>>>>> using protein2genome rather than est2genome as a predictor
>>>>>>>>>>>>>>if
>>>>>>>>>>>>>>you
>>>>>>>> are
>>>>>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>>>>>> produced
>>>>>>>> models
>>>>>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>>>>>with
>>>>>>>> the
>>>>>>>>>>>>>> AED_threshold with such limited protein support does create
>>>>>>>>>>>>>> an
>>>>>>>> artificial
>>>>>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>>>>>  How many contigs do you have in total and what is the N50
>>>>>>>>>>>>>> value
>>>>>>>> for
>>>>>>>>>>>>>> the
>>>>>>>>>>>>>> assembly? If you have a large number of very short contigs,
>>>>>>>>>>>>>>you
>>>>>>>>>>>>>> will
>>>>>>>>>>>>>>  get
>>>>>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>>>>>> contigs
>>>>>>>>>>>>>>  and
>>>>>>>>>>>>>> many contigs tend t be subtle rearrangements of other
>>>>>>>>>>>>>>contigs
>>>>>>>>>>>>>> just
>>>>>>>> assembled in a slightly different way (so you can get bits and
>>>>>>>> pieces
>>>>>>>>>>>>>>  of
>>>>>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>>>>>  confounding
>>>>>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>>>>>> would
>>>>>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>>>>>  completeness
>>>>>>>>>>>>>> as
>>>>>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>>>>>> statistics
>>>>>>>>>>>>>> produced
>>>>>>>>>>>>>>  is a percent of genes that are found complete (end to end)
>>>>>>>>>>>>>> vs
>>>>>>>> those
>>>>>>>>>>>>>>  that
>>>>>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend
>>>>>>>>>>>>>>to
>>>>>>>>>>>>>> be
>>>>>>>> shorter
>>>>>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>>>>>CEGMA
>>>>>>>> gives
>>>>>>>>>>>>>>  a
>>>>>>>>>>>>>> high partial percentage and a low complete percentage, then
>>>>>>>>>>>>>> this
>>>>>>>>>>>>>>  pattern
>>>>>>>>>>>>>> can be expected to be even more exaggerated for other genes
>>>>>>>>>>>>>> in
>>>>>>>>>>>>>> the
>>>>>>>> genome.
>>>>>>>>>>>>>>  If your genome is highly fragmented or proteins do not
>>>>>>>>>>>>>>align
>>>>>>>>>>>>>> well
>>>>>>>> then
>>>>>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>>>>>genomes
>>>>>>>> end
>>>>>>>>>>>>>>  up
>>>>>>>>>>>>>> having extremely fragmented assemblies (on the order of
>>>>>>>>>>>>>>100,000
>>>>>>>> contigs),
>>>>>>>>>>>>>>  and if they are distantly related to other annotated
>>>>>>>>>>>>>>species
>>>>>>>>>>>>>>few
>>>>>>>>>>>>>> proteins
>>>>>>>>>>>>>>  may align to the contigs because the introns in the
>>>>>>>>>>>>>>alignments
>>>>>>>> tend
>>>>>>>>>>>>>>  to
>>>>>>>>>>>>>> be
>>>>>>>>>>>>>>  so long and exons so short that it pushes down the
>>>>>>>>>>>>>> significance
>>>>>>>> scores
>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if
>>>>>>>>>>>>>> not
>>>>>>>> only
>>>>>>>>>>>>>>  way
>>>>>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>>>>score.
>>>>>>>> The
>>>>>>>>>>>>>> input gff3 file was provided to option model_pred(see
>>>>>>>>>>>>>> attached
>>>>>>>>>>>>>> file
>>>>>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>>>>>  least
>>>>>>>>>>>>>>  5
>>>>>>>>>>>>>> genes with AED score less than 0.75. However there were no
>>>>>>>>>>>>>> genes
>>>>>>>>>>>>>>  predicted
>>>>>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have
>>>>>>>>>>>>>> also
>>>>>>>>>>>>>> attached
>>>>>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if
>>>>>>>>>>>>>>you
>>>>>>>>>>>>>> just
>>>>>>>>>>>>>> want
>>>>>>>>>>>>>>  to restrict final gene models to close matches directly
>>>>>>>>>>>>>>within
>>>>>>>>>>>>>> maker.
>>>>>>>>>>>>>> On
>>>>>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>>>>>> training
>>>>>>>>>>>>>>  gene
>>>>>>>>>>>>>> predictors, use the maker2zff script for generating a
>>>>>>>>>>>>>> filtered
>>>>>>>>>>>>>>  dataset
>>>>>>>>>>>>>> for
>>>>>>>>>>>>>>  SNAP training.  There are a number of filters available.
>>>>>>>>>>>>>> Just
>>>>>>>> call
>>>>>>>>>>>>>>  the
>>>>>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence"
>>>>>>>>>>>>>><dence at genetics.utah.edu>
>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>> Hi Parul,
>>>>>>>>>>>>>> I think the way you described (with the maker_opts.ctl file)
>>>>>>>>>>>>>>is
>>>>>>>> how
>>>>>>>>>>>>>> you
>>>>>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>>>>>> Daniel
>>>>>>>>>>>>>> Daniel Ence
>>>>>>>>>>>>>> Graduate Student
>>>>>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>>>>>> University of Utah
>>>>>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>>>>>> ________________________________________
>>>>>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>>>>  Kudtarkar
>>>>>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>>>>>> Also, are there any other parameters that are required when
>>>>>>>> filtering
>>>>>>>>>>>>>> based on AED score?
>>>>>>>>>>>>>>  Hello Carson,
>>>>>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>>>>>> models
>>>>>>>>>>>>>> at
>>>>>>>>>>>>>> specific AED score.
>>>>>>>>>>>>>>  Alternatively if I were to do this within maker with
>>>>>>>>>>>>>>regards
>>>>>>>> to
>>>>>>>>>>>>>> parameters
>>>>>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>>> genes
>>>>>>>>>>>>>> gff3
>>>>>>>>>>>>>>  file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>>>threshold?
>>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best
>>>>>>>>>>>>>>and
>>>>>>>> 1
>>>>>>>>>>>>>>  is
>>>>>>>>>>>>>> worst
>>>>>>>>>>>>>>  as
>>>>>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>>>>>> parameter
>>>>>>>>>>>>>> to
>>>>>>>>>>>>>>  require better matching to the evidence by setting it
>>>>>>>>>>>>>>closer
>>>>>>>> to
>>>>>>>>>>>>>> 0.
>>>>>>>>>>>>>> You
>>>>>>>>>>>>>>  can
>>>>>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>>>>>> your
>>>>>>>>>>>>>> calls
>>>>>>>>>>>>>> may
>>>>>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>>>>>  --Carson
>>>>>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>> Dear Maker community,
>>>>>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>>  based
>>>>>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>>>>>Augustus
>>>>>>>> predictions, followed by boot-strapping. I would typically expect
>>>>>>>> 20-30K
>>>>>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>>  indicating
>>>>>>>>>>>>>>  too
>>>>>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>>>>>> predication/script to retain predictions with AED score 1
>>>>>>>>>>>>>>and
>>>>>>>>>>>>>> if
>>>>>>>>>>>>>> yes
>>>>>>>>>>>>>> how
>>>>>>>>>>>>>> to go about this?
>>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yande
>>>>>>>>>>>>>>ll
>>>>>>>> -l
>>>>>>>>>>>>>> ab
>>>>>>>>>>>>>> .o
>>>>>>>>>>>>>> rg
>>>>>>>>>>>>>>  --
>>>>>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yande
>>>>>>>>>>>>>>ll
>>>>>>>>>>>>>>-l
>>>>>>>>>>>>>>a
>>>>>>>> b.
>>>>>>>>>>>>>> or
>>>>>>>>>>>>>> g
>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yande
>>>>>>>>>>>>>>ll
>>>>>>>>>>>>>>-l
>>>>>>>>>>>>>>a
>>>>>>>> b.
>>>>>>>>>>>>>> or
>>>>>>>>>>>>>> g
>>>>>>>>>>>>>>  _______________________________________________
>>>>>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yande
>>>>>>>>>>>>>>ll
>>>>>>>>>>>>>>-l
>>>>>>>>>>>>>>ab
>>>>>>>> .o
>>>>>>>>>>>>>> rg
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>>
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>>>>
>>>>>
>>>>>
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>>>
>>
>>
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>





From indu2287 at gmail.com  Wed Dec 19 23:33:33 2012
From: indu2287 at gmail.com (indu khatri)
Date: Thu, 20 Dec 2012 11:03:33 +0530
Subject: [maker-devel] query
Message-ID: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>

 Hello Maker-devel
    Thanks for adding me to the list. I am new to this field. I have a
query regarding maker annotation.
    I have assembled a fungal Genome with 1590 contigs and was trying to
    annotate it using MAKER pipeline. I only have paired end WGS sequence
from
    Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
    any transcriptome data. I am using ESTs of a closer species for
validation
    and similarly the protein sequences. I have started annotation but the
    problem is the pipeline gets stuck to the first contig on blastx step
and
    doesn't move further. I could not make out the problem. Can you please
help
    me out of this.

Thanks and regards

-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India
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From dence at genetics.utah.edu  Thu Dec 20 10:53:59 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Thu, 20 Dec 2012 16:53:59 +0000
Subject: [maker-devel] query
In-Reply-To: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49939@mxb2.hg.genetics.utah.edu>

Hi Indu, Can you send you some of the error output that maker is printing? Blastx is used at a couple of different steps in maker's pipeline, so it is hard to tell without more information. You might also think about using the swiss prot database as a source for protein sequences.

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: maker-devel-bounces at yandell-lab.org [maker-devel-bounces at yandell-lab.org] on behalf of indu khatri [indu2287 at gmail.com]
Sent: Wednesday, December 19, 2012 10:33 PM
To: maker-devel at yandell-lab.org
Subject: [maker-devel] query

 Hello Maker-devel
    Thanks for adding me to the list. I am new to this field. I have a query regarding maker annotation.
    I have assembled a fungal Genome with 1590 contigs and was trying to
    annotate it using MAKER pipeline. I only have paired end WGS sequence from
    Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
    any transcriptome data. I am using ESTs of a closer species for validation
    and similarly the protein sequences. I have started annotation but the
    problem is the pipeline gets stuck to the first contig on blastx step and
    doesn't move further. I could not make out the problem. Can you please help
    me out of this.

Thanks and regards

--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

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From barry.moore at genetics.utah.edu  Thu Dec 20 11:20:31 2012
From: barry.moore at genetics.utah.edu (Barry Moore)
Date: Thu, 20 Dec 2012 10:20:31 -0700
Subject: [maker-devel] query
In-Reply-To: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
Message-ID: <15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>

Hi Indu,

The error output as Daniel suggested would be great and also a bit more detail on the problem.  Is it stalled on a long contig - how long?  How long has it been stalled for?  How many cpus are you running?  Are you running under MPI?  How big is the protein evidence file?  If you're using the altest function for your ESTs then it's running tblastx which is up to 10X slower than blastn with regular ESTs, is it possible that you're stuck on tblastx?

Finally, it can help if you isolate the problem a bit.  Can you run successfully on any of your contigs by running single contigs in your fasta file?  If it's stalled on a large contig, iteratively cut it in half and see if the problem isolates to one part of the contig.

B

On Dec 19, 2012, at 10:33 PM, indu khatri wrote:

>  Hello Maker-devel
>     Thanks for adding me to the list. I am new to this field. I have a query regarding maker annotation.
>     I have assembled a fungal Genome with 1590 contigs and was trying to
>     annotate it using MAKER pipeline. I only have paired end WGS sequence from
>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
>     any transcriptome data. I am using ESTs of a closer species for validation
>     and similarly the protein sequences. I have started annotation but the
>     problem is the pipeline gets stuck to the first contig on blastx step and
>     doesn't move further. I could not make out the problem. Can you please help
>     me out of this.
> 
> Thanks and regards
> 
> -- 
> Indu Khatri
> PhD Research Fellow,
> C/o Dr. Srikrishna Subramanian
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
> 
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

Barry Moore
Research Scientist
Dept. of Human Genetics
University of Utah
Salt Lake City, UT 84112
--------------------------------------------
(801) 585-3543




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From ranjani at uga.edu  Thu Dec 20 11:21:45 2012
From: ranjani at uga.edu (Sivaranjani Namasivayam)
Date: Thu, 20 Dec 2012 17:21:45 +0000
Subject: [maker-devel] MAKER annotations
Message-ID: <A21F03FBB429334EB4D450CC75E8CBF34B947EB4@CH1PRD0210MB384.namprd02.prod.outlook.com>

Hi,

I have a query regarding MAKER predictions. I made a a first round of predictions with RNAseq data from 454 and Illumina as EST evidence and proteins sequences from related organisms as proteins evidence. I also used augustus trained on a closely related organism as the ab-initio gene predictor.
I got ~4000 maker annotations (I expect around ~10,000 genes)

I used the annotations with AED score of 0 to train SNAP and used the HMM when retraining MAKER. This time I got ~8,000 genes but when I examined some annotations they appeared to be have worsened when compared to the initial predictions: that is, genes were getting split, UTRs were not annotated and the original predictions were modified but not for better.

Would you have any suggestions on how I can improve the annotations.

Also, is there a way to tell MAKER to produce gene models for all the cufflinks assembled transcripts(that is, for the data set I provide as EST evidence).

Thanks,
Ranjani
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From carsonhh at gmail.com  Thu Dec 20 12:16:42 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 20 Dec 2012 13:16:42 -0500
Subject: [maker-devel] MAKER annotations
In-Reply-To: <A21F03FBB429334EB4D450CC75E8CBF34B947EB4@CH1PRD0210MB384.namprd02.prod.outlook.com>
Message-ID: <CCF8B883.1724D%carsonhh@gmail.com>

Don't use an AED filter of 0.  It's too strict and will introduces certain
artifacts like partial genes.  Lower than 0.5 is probably sufficient for
training.  Also if in your first round you use Augustus, and the second
round you used SNAP instead, you may get poorer annotations because Augustus
is performing better than SNAP.  SNAP might need more training as well,
especially if the low AED filter introduced partial gene artifacts.    What
kind of organism are you annotating?

--Carson


From:  Sivaranjani Namasivayam <ranjani at uga.edu>
Date:  Thursday, 20 December, 2012 12:21 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  [maker-devel] MAKER annotations

Hi,

I have a query regarding MAKER predictions. I made a a first round of
predictions with RNAseq data from 454 and Illumina as EST evidence and
proteins sequences from related organisms as proteins evidence. I also used
augustus trained on a closely related organism as the ab-initio gene
predictor.
I got ~4000 maker annotations (I expect around ~10,000 genes)

I used the annotations with AED score of 0 to train SNAP and used the HMM
when retraining MAKER. This time I got ~8,000 genes but when I examined some
annotations they appeared to be have worsened when compared to the initial
predictions: that is, genes were getting split, UTRs were not annotated and
the original predictions were modified but not for better.

Would you have any suggestions on how I can improve the annotations.

Also, is there a way to tell MAKER to produce gene models for all the
cufflinks assembled transcripts(that is, for the data set I provide as EST
evidence).

Thanks,
Ranjani
_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From indu2287 at gmail.com  Thu Dec 20 13:41:59 2012
From: indu2287 at gmail.com (indu khatri)
Date: Thu, 20 Dec 2012 11:41:59 -0800
Subject: [maker-devel] Fwd:  query
In-Reply-To: <CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
	<15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>
	<CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>
Message-ID: <CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>

Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species
I chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <barry.moore at genetics.utah.edu
> wrote:

> Hi Indu,
>
> The error output as Daniel suggested would be great and also a bit more
> detail on the problem.  Is it stalled on a long contig - how long?  How
> long has it been stalled for?  How many cpus are you running?  Are you
> running under MPI?  How big is the protein evidence file?  If you're using
> the altest function for your ESTs then it's running tblastx which is up to
> 10X slower than blastn with regular ESTs, is it possible that you're stuck
> on tblastx?
>
> Finally, it can help if you isolate the problem a bit.  Can you run
> successfully on any of your contigs by running single contigs in your fasta
> file?  If it's stalled on a large contig, iteratively cut it in half and
> see if the problem isolates to one part of the contig.
>
> B
>
> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
>
>  Hello Maker-devel
>     Thanks for adding me to the list. I am new to this field. I have a
> query regarding maker annotation.
>     I have assembled a fungal Genome with 1590 contigs and was trying to
>     annotate it using MAKER pipeline. I only have paired end WGS sequence
> from
>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont
> have
>     any transcriptome data. I am using ESTs of a closer species for
> validation
>     and similarly the protein sequences. I have started annotation but the
>     problem is the pipeline gets stuck to the first contig on blastx step
> and
>     doesn't move further. I could not make out the problem. Can you please
> help
>     me out of this.
>
> Thanks and regards
>
> --
>
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
> Khatri
> PhD Research Fellow,
> C/o Dr. Srikrishna Subramanian
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
>
>  _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>
>  Barry Moore
> Research Scientist
> Dept. of Human Genetics
> University of Utah
> Salt Lake City, UT 84112
> --------------------------------------------
> (801) 585-3543
>
>
>
>
>


-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India
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From carsonhh at gmail.com  Thu Dec 20 16:04:43 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 20 Dec 2012 17:04:43 -0500
Subject: [maker-devel] MAKER annotations
In-Reply-To: <A21F03FBB429334EB4D450CC75E8CBF34B947ECF@CH1PRD0210MB384.namprd02.prod.outlook.com>
Message-ID: <CCF8F513.172A6%carsonhh@gmail.com>

If your organism is biased toward short genes with few introns, you might
also want to try something like GeneMark.  Not all gene predictors work well
on all kinds of gene structures, so I often will run multiple and then drop
those that perform poorly.

Thanks,
Carson


From:  Sivaranjani Namasivayam <ranjani at uga.edu>
Date:  Thursday, 20 December, 2012 1:33 PM
To:  Carson Holt <carsonhh at gmail.com>
Subject:  RE: [maker-devel] MAKER annotations

I am annotating a Apicomplexan organism.  When I retrained I used both SNAP
and Augustus. I will lower the AED score to 0.5 and check if that improves
the results.
Thanks for suggestion!

Ranjani

From: Carson Holt [carsonhh at gmail.com]
Sent: Thursday, December 20, 2012 1:16 PM
To: Sivaranjani Namasivayam; maker-devel at yandell-lab.org
Subject: Re: [maker-devel] MAKER annotations

Don't use an AED filter of 0.  It's too strict and will introduces certain
artifacts like partial genes.  Lower than 0.5 is probably sufficient for
training.  Also if in your first round you use Augustus, and the second
round you used SNAP instead, you may get poorer annotations because Augustus
is performing better than SNAP.  SNAP might need more training as well,
especially if the low AED filter introduced partial gene artifacts.    What
kind of organism are you annotating?

--Carson


From: Sivaranjani Namasivayam <ranjani at uga.edu>
Date: Thursday, 20 December, 2012 12:21 PM
To: "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject: [maker-devel] MAKER annotations

Hi,

I have a query regarding MAKER predictions. I made a a first round of
predictions with RNAseq data from 454 and Illumina as EST evidence and
proteins sequences from related organisms as proteins evidence. I also used
augustus trained on a closely related organism as the ab-initio gene
predictor.
I got ~4000 maker annotations (I expect around ~10,000 genes)

I used the annotations with AED score of 0 to train SNAP and used the HMM
when retraining MAKER. This time I got ~8,000 genes but when I examined some
annotations they appeared to be have worsened when compared to the initial
predictions: that is, genes were getting split, UTRs were not annotated and
the original predictions were modified but not for better.

Would you have any suggestions on how I can improve the annotations.

Also, is there a way to tell MAKER to produce gene models for all the
cufflinks assembled transcripts(that is, for the data set I provide as EST
evidence).

Thanks,
Ranjani
_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org


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From kapeelc at gmail.com  Thu Dec 20 17:00:10 2012
From: kapeelc at gmail.com (Kapeel Chougule)
Date: Thu, 20 Dec 2012 16:00:10 -0700
Subject: [maker-devel] AED eAED QI scores??
Message-ID: <CA+DOtediwDrsyvibU_B=av=knpeQRxVMjEM8_Xhq_a7rd2+NXQ@mail.gmail.com>

Hello,

I ran MAKER 2.27 using the option pred_stats=1 in the control file. In the
last column of the maker output gff file I have the
following annotation quality measures.

AED:0.41 eAED:0.41 QI:0|0.5|0.4|1|1|1|5|0|278

My understanding is that with AED score 0 your annotations are in prefect
agreement with the evidence data sets and with AED 1,vice versa.

 I would like to know what is the difference between AED against eAED
score. And how do I interpret the QI cloumn?

Thank you,

-- 
*

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719
www.genome.arizona.edu
*
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From dence at genetics.utah.edu  Fri Dec 21 11:08:31 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Fri, 21 Dec 2012 17:08:31 +0000
Subject: [maker-devel] AED eAED QI scores??
In-Reply-To: <CA+DOtediwDrsyvibU_B=av=knpeQRxVMjEM8_Xhq_a7rd2+NXQ@mail.gmail.com>
References: <CA+DOtediwDrsyvibU_B=av=knpeQRxVMjEM8_Xhq_a7rd2+NXQ@mail.gmail.com>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BC2@mxb2.hg.genetics.utah.edu>

Hi Kapeel, the QI columns are explained in the first maker paper (Cantarel and Yandell, Genome Research 2008).

>From pg. 189,

Table 2. Maker quality index summary

Length of the 5 UTR

Fraction of splice sites confirmed by an EST alignment

Fraction of exons that overlap an EST alignment

Fraction of exons that overlap EST or Protein alignments

Fraction of splice sites confirmed by a SNAP prediction

Fraction of exons that overlap a SNAP prediction

Number of exons in the mRNA

Length of the 3 UTR

Length of the protein sequence produced by the mRNA


eAED is the the AED edit distance at an exon level, not base pair level like normal AED.


Thanks,

Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: maker-devel-bounces at yandell-lab.org [maker-devel-bounces at yandell-lab.org] on behalf of Kapeel Chougule [kapeelc at gmail.com]
Sent: Thursday, December 20, 2012 4:00 PM
To: maker-devel at yandell-lab.org
Subject: [maker-devel] AED eAED QI scores??

Hello,

I ran MAKER 2.27 using the option pred_stats=1 in the control file. In the last column of the maker output gff file I have the following annotation quality measures.

AED:0.41 eAED:0.41 QI:0|0.5|0.4|1|1|1|5|0|278

My understanding is that with AED score 0 your annotations are in prefect agreement with the evidence data sets and with AED 1,vice versa.

 I would like to know what is the difference between AED against eAED score. And how do I interpret the QI cloumn?

Thank you,

--

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719
www.genome.arizona.edu<http://www.genome.arizona.edu>
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From dence at genetics.utah.edu  Fri Dec 21 11:23:24 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Fri, 21 Dec 2012 17:23:24 +0000
Subject: [maker-devel] query
In-Reply-To: <CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
	<15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>
	<CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>,
	<CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>

Hi Indu,

I'm going to echo Barry's request for more details about this problem too. Does augustus fail on more than one contig or does it fail repeatedly on the same contig? If its only contig, how big is that contig and is it possibly all masked out by repeatmasker? If you exclude that one contig, do the rest run successfully?  What are you using to mask the repeats in the genome? Which augustus model are you using, and how did you choose that model?

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: indu khatri [indu2287 at gmail.com]
Sent: Thursday, December 20, 2012 12:41 PM
To: maker-devel at yandell-lab.org
Cc: Barry Moore; Daniel Ence
Subject: Fwd: [maker-devel] query


Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species I chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <barry.moore at genetics.utah.edu<mailto:barry.moore at genetics.utah.edu>> wrote:
Hi Indu,

The error output as Daniel suggested would be great and also a bit more detail on the problem.  Is it stalled on a long contig - how long?  How long has it been stalled for?  How many cpus are you running?  Are you running under MPI?  How big is the protein evidence file?  If you're using the altest function for your ESTs then it's running tblastx which is up to 10X slower than blastn with regular ESTs, is it possible that you're stuck on tblastx?

Finally, it can help if you isolate the problem a bit.  Can you run successfully on any of your contigs by running single contigs in your fasta file?  If it's stalled on a large contig, iteratively cut it in half and see if the problem isolates to one part of the contig.

B

On Dec 19, 2012, at 10:33 PM, indu khatri wrote:

 Hello Maker-devel
    Thanks for adding me to the list. I am new to this field. I have a query regarding maker annotation.
    I have assembled a fungal Genome with 1590 contigs and was trying to
    annotate it using MAKER pipeline. I only have paired end WGS sequence from
    Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
    any transcriptome data. I am using ESTs of a closer species for validation
    and similarly the protein sequences. I have started annotation but the
    problem is the pipeline gets stuck to the first contig on blastx step and
    doesn't move further. I could not make out the problem. Can you please help
    me out of this.

Thanks and regards

--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

_______________________________________________
maker-devel mailing list
maker-devel at box290.bluehost.com<mailto:maker-devel at box290.bluehost.com>
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

Barry Moore
Research Scientist
Dept. of Human Genetics
University of Utah
Salt Lake City, UT 84112
--------------------------------------------
(801) 585-3543







--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India

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From carsonhh at gmail.com  Fri Dec 21 11:25:13 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 21 Dec 2012 12:25:13 -0500
Subject: [maker-devel] AED eAED QI scores??
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BC2@mxb2.hg.genetics.utah.edu>
Message-ID: <CCFA01EA.172C9%carsonhh@gmail.com>

eAED is a little more than that.  It is still at a base pair level, but it
uses exon inference from mRNAseq and in addition has a protein evidence
overlap correction for each exon.  Sometimes the overlapping protein reading
frame doesn't perfectly match the entire model (exonerate for example can
shift the reading frames by 1 in the middle to get a better alignment and
BLAST can't).  This means that just because you have physical overlap it may
be meaningless overlap.  eAED corrects for this.  Also it can use inferred
evidence from mRNAseq.  For example if you have mRNAseq data that confirm
both ends of an exon around the splice site, but not the middle of the exon,
then there is probably enough correlated data for MAKER to confidently infer
the middle of the exon.  It then counts those base pairs as confirmed even
though they don't physically overlap.  This is common with mRNAseq data as
it can taper off in the middle of long exons or won't align correctly around
short exons.  In both cases the middle gets left out.  MAKER uses
information from the reading frame and the ab initio predictors to infer if
those regions.

Most of the time eAED and AED will be identical.  eAED can sometimes be
higher for certain mRNAseq alignments and lower for what are apparent
spurious protein alignments.

--Carson


From:  Daniel Ence <dence at genetics.utah.edu>
Date:  Friday, 21 December, 2012 12:08 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] AED eAED QI scores??

Hi Kapeel, the QI columns are explained in the first maker paper (Cantarel
and Yandell, Genome Research 2008).

>From pg. 189,
Table 2. Maker quality index summary

Length of the 5 UTR

Fraction of splice sites confirmed by an EST alignment

Fraction of exons that overlap an EST alignment

Fraction of exons that overlap EST or Protein alignments

Fraction of splice sites confirmed by a SNAP prediction

Fraction of exons that overlap a SNAP prediction

Number of exons in the mRNA

Length of the 3 UTR

Length of the protein sequence produced by the mRNA



eAED is the the AED edit distance at an exon level, not base pair level like
normal AED. 



Thanks,

Daniel 


Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

From: maker-devel-bounces at yandell-lab.org
[maker-devel-bounces at yandell-lab.org] on behalf of Kapeel Chougule
[kapeelc at gmail.com]
Sent: Thursday, December 20, 2012 4:00 PM
To: maker-devel at yandell-lab.org
Subject: [maker-devel] AED eAED QI scores??

Hello, 

I ran MAKER 2.27 using the option pred_stats=1 in the control file. In the
last column of the maker output gff file I have the following annotation
quality measures.

AED:0.41 eAED:0.41 QI:0|0.5|0.4|1|1|1|5|0|278

My understanding is that with AED score 0 your annotations are in prefect
agreement with the evidence data sets and with AED 1,vice versa.

 I would like to know what is the difference between AED against eAED score.
And how do I interpret the QI cloumn?

Thank you,

-- 

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719   
www.genome.arizona.edu <http://www.genome.arizona.edu>
_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From carsonhh at gmail.com  Fri Dec 21 11:31:32 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 21 Dec 2012 12:31:32 -0500
Subject: [maker-devel] query
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>
Message-ID: <CCFA05D3.172F3%carsonhh@gmail.com>

Also try and capture the entire STDERR to a file for the failure, and attach
it to the e-mail.  The failure indicates that augustus itself failed.
Normally augustus should have provided it's own error message before the
"ERROR: Augustus failed" message.  If not it means that augusuts is failing
to even initialize.  If you send the whole STDERR we can find command line
MAKER used to run augustus, and we can let you try and execute the exact
same command line directly in a terminal (outside of MAKER) to see what
augustus does.

Thanks,
Carson



From:  Daniel Ence <dence at genetics.utah.edu>
Date:  Friday, 21 December, 2012 12:23 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] query

Hi Indu, 

I'm going to echo Barry's request for more details about this problem too.
Does augustus fail on more than one contig or does it fail repeatedly on the
same contig? If its only contig, how big is that contig and is it possibly
all masked out by repeatmasker? If you exclude that one contig, do the rest
run successfully?  What are you using to mask the repeats in the genome?
Which augustus model are you using, and how did you choose that model?

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

From: indu khatri [indu2287 at gmail.com]
Sent: Thursday, December 20, 2012 12:41 PM
To: maker-devel at yandell-lab.org
Cc: Barry Moore; Daniel Ence
Subject: Fwd: [maker-devel] query


Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species I
chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore
<barry.moore at genetics.utah.edu> wrote:
> Hi Indu, 
> 
> The error output as Daniel suggested would be great and also a bit more detail
> on the problem.  Is it stalled on a long contig - how long?  How long has it
> been stalled for?  How many cpus are you running?  Are you running under MPI?
> How big is the protein evidence file?  If you're using the altest function for
> your ESTs then it's running tblastx which is up to 10X slower than blastn with
> regular ESTs, is it possible that you're stuck on tblastx?
> 
> Finally, it can help if you isolate the problem a bit.  Can you run
> successfully on any of your contigs by running single contigs in your fasta
> file?  If it's stalled on a large contig, iteratively cut it in half and see
> if the problem isolates to one part of the contig.
> 
> B
> 
> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
> 
>>  Hello Maker-devel
>>     Thanks for adding me to the list. I am new to this field. I have a query
>> regarding maker annotation.
>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>     annotate it using MAKER pipeline. I only have paired end WGS sequence
>> from
>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
>>     any transcriptome data. I am using ESTs of a closer species for
>> validation
>>     and similarly the protein sequences. I have started annotation but the
>>     problem is the pipeline gets stuck to the first contig on blastx step and
>>     doesn't move further. I could not make out the problem. Can you please
>> help
>>     me out of this.
>> 
>> Thanks and regards
>> 
>> -- 
>>  
>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6
>> a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
>> PhD Research Fellow,
>> C/o Dr. Srikrishna Subramanian
>> Institute of Microbial Technology,
>> Chandigarh-160036,
>> India
>> 
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
> 
> Barry Moore
> Research Scientist
> Dept. of Human Genetics
> University of Utah
> Salt Lake City, UT 84112
> --------------------------------------------
> (801) 585-3543
> 
> 
> 
> 



-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India

_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From carsonhh at gmail.com  Fri Dec 21 11:40:10 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 21 Dec 2012 12:40:10 -0500
Subject: [maker-devel] query
In-Reply-To: <CCFA0734.17301%carsonhh@gmail.com>
Message-ID: <CCFA0869.17306%carsonhh@gmail.com>

In addition my last e-mailed explanation of eAED, here is where you can get
an explanation of how MAKER uses and calculates AED -->
http://www.biomedcentral.com/1471-2105/12/491
The original AED concept was borrowed from here  -->
http://www.biomedcentral.com/1471-2105/10/67

Thanks,
Carson

From:  Carson Holt <carsonhh at gmail.com>
Date:  Friday, 21 December, 2012 12:31 PM
To:  Daniel Ence <dence at genetics.utah.edu>, "maker-devel at yandell-lab.org"
<maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] query

Also try and capture the entire STDERR to a file for the failure, and attach
it to the e-mail.  The failure indicates that augustus itself failed.
Normally augustus should have provided it's own error message before the
"ERROR: Augustus failed" message.  If not it means that augusuts is failing
to even initialize.  If you send the whole STDERR we can find command line
MAKER used to run augustus, and we can let you try and execute the exact
same command line directly in a terminal (outside of MAKER) to see what
augustus does.

Thanks,
Carson



From:  Daniel Ence <dence at genetics.utah.edu>
Date:  Friday, 21 December, 2012 12:23 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] query

Hi Indu, 

I'm going to echo Barry's request for more details about this problem too.
Does augustus fail on more than one contig or does it fail repeatedly on the
same contig? If its only contig, how big is that contig and is it possibly
all masked out by repeatmasker? If you exclude that one contig, do the rest
run successfully?  What are you using to mask the repeats in the genome?
Which augustus model are you using, and how did you choose that model?

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

From: indu khatri [indu2287 at gmail.com]
Sent: Thursday, December 20, 2012 12:41 PM
To: maker-devel at yandell-lab.org
Cc: Barry Moore; Daniel Ence
Subject: Fwd: [maker-devel] query


Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species I
chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore
<barry.moore at genetics.utah.edu> wrote:
> Hi Indu, 
> 
> The error output as Daniel suggested would be great and also a bit more detail
> on the problem.  Is it stalled on a long contig - how long?  How long has it
> been stalled for?  How many cpus are you running?  Are you running under MPI?
> How big is the protein evidence file?  If you're using the altest function for
> your ESTs then it's running tblastx which is up to 10X slower than blastn with
> regular ESTs, is it possible that you're stuck on tblastx?
> 
> Finally, it can help if you isolate the problem a bit.  Can you run
> successfully on any of your contigs by running single contigs in your fasta
> file?  If it's stalled on a large contig, iteratively cut it in half and see
> if the problem isolates to one part of the contig.
> 
> B
> 
> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
> 
>>  Hello Maker-devel
>>     Thanks for adding me to the list. I am new to this field. I have a query
>> regarding maker annotation.
>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>     annotate it using MAKER pipeline. I only have paired end WGS sequence
>> from
>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
>>     any transcriptome data. I am using ESTs of a closer species for
>> validation
>>     and similarly the protein sequences. I have started annotation but the
>>     problem is the pipeline gets stuck to the first contig on blastx step and
>>     doesn't move further. I could not make out the problem. Can you please
>> help
>>     me out of this.
>> 
>> Thanks and regards
>> 
>> -- 
>>  
>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6
>> a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
>> PhD Research Fellow,
>> C/o Dr. Srikrishna Subramanian
>> Institute of Microbial Technology,
>> Chandigarh-160036,
>> India
>> 
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
> 
> Barry Moore
> Research Scientist
> Dept. of Human Genetics
> University of Utah
> Salt Lake City, UT 84112
> --------------------------------------------
> (801) 585-3543
> 
> 
> 
> 



-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India

_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/m
aker-devel_yandell-lab.org


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From indu2287 at gmail.com  Fri Dec 21 11:58:31 2012
From: indu2287 at gmail.com (indu khatri)
Date: Fri, 21 Dec 2012 09:58:31 -0800
Subject: [maker-devel] query
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
	<15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>
	<CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>
	<CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>
	<F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>
Message-ID: <CAFCapZvXFg3TdU8uEd0szU9inLCrNjujH36tEm55DO=1rKR1mw@mail.gmail.com>

Hii Daniel

It was failing for 1 contig only. The contig length is approx 1.5 Mb.
Excluding that contig the run was successful. I am using RepeatMasker
libraries only for masking the sequences. I used Fusarium graminearum
species as Augustus model species.

I have one more query about Maker annotation results. Only augustus as gene
predictor can be a good predictor for annotations or I have to retrain it
using the previous results from first runs of MAKER in order to get
validated gene models.

Thanks.


On Fri, Dec 21, 2012 at 9:23 AM, Daniel Ence <dence at genetics.utah.edu>wrote:

>  Hi Indu,
>
>  I'm going to echo Barry's request for more details about this problem
> too. Does augustus fail on more than one contig or does it fail repeatedly
> on the same contig? If its only contig, how big is that contig and is it
> possibly all masked out by repeatmasker? If you exclude that one contig, do
> the rest run successfully?  What are you using to mask the repeats in the
> genome? Which augustus model are you using, and how did you choose that
> model?
>
>  Thanks,
> Daniel
>
>  Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
>
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
>   ------------------------------
> *From:* indu khatri [indu2287 at gmail.com]
> *Sent:* Thursday, December 20, 2012 12:41 PM
> *To:* maker-devel at yandell-lab.org
> *Cc:* Barry Moore; Daniel Ence
> *Subject:* Fwd: [maker-devel] query
>
>
> Thanks Daniel and Barry for your reply.
>
> I have sorted out that problem. It was due to very distant homolog species
> I chose for training.
>
> But, I am still getting some errors while running MAKER.
> ERROR: Augustus failed
> ERROR: Failed while preparing ab-inits
> ERROR: Chunk failed at level:4, tier_type:0
> FAILED CONTIG
>
> Can you please tell me what is the possible reason for this error?
>
> Thanks in advance.
>
>
>
> On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <
> barry.moore at genetics.utah.edu> wrote:
>
>> Hi Indu,
>>
>>  The error output as Daniel suggested would be great and also a bit more
>> detail on the problem.  Is it stalled on a long contig - how long?  How
>> long has it been stalled for?  How many cpus are you running?  Are you
>> running under MPI?  How big is the protein evidence file?  If you're using
>> the altest function for your ESTs then it's running tblastx which is up to
>> 10X slower than blastn with regular ESTs, is it possible that you're stuck
>> on tblastx?
>>
>>  Finally, it can help if you isolate the problem a bit.  Can you run
>> successfully on any of your contigs by running single contigs in your fasta
>> file?  If it's stalled on a large contig, iteratively cut it in half and
>> see if the problem isolates to one part of the contig.
>>
>>  B
>>
>>  On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
>>
>>     Hello Maker-devel
>>     Thanks for adding me to the list. I am new to this field. I have a
>> query regarding maker annotation.
>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>     annotate it using MAKER pipeline. I only have paired end WGS sequence
>> from
>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont
>> have
>>     any transcriptome data. I am using ESTs of a closer species for
>> validation
>>     and similarly the protein sequences. I have started annotation but the
>>     problem is the pipeline gets stuck to the first contig on blastx step
>> and
>>     doesn't move further. I could not make out the problem. Can you
>> please help
>>     me out of this.
>>
>>  Thanks and regards
>>
>>  --
>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
>> Khatri
>> PhD Research Fellow,
>> C/o Dr. Srikrishna Subramanian
>> Institute of Microbial Technology,
>> Chandigarh-160036,
>> India
>>
>>    _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>>
>>  Barry Moore
>> Research Scientist
>> Dept. of Human Genetics
>> University of Utah
>> Salt Lake City, UT 84112
>> --------------------------------------------
>> (801) 585-3543
>>
>>
>>
>>
>>
>
>
>  --
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
> Khatri
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
>
>
>
>
>  --
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
> Khatri
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>


-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India
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From dence at genetics.utah.edu  Fri Dec 21 13:07:40 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Fri, 21 Dec 2012 19:07:40 +0000
Subject: [maker-devel] query
In-Reply-To: <CAFCapZvXFg3TdU8uEd0szU9inLCrNjujH36tEm55DO=1rKR1mw@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
	<15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>
	<CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>
	<CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>
	<F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>,
	<CAFCapZvXFg3TdU8uEd0szU9inLCrNjujH36tEm55DO=1rKR1mw@mail.gmail.com>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49C08@mxb2.hg.genetics.utah.edu>

Hi Indu, Can you send the error output that Carson mentioned? Using a closely related augustus model for your organism can be a good approach, if that's the best you can do. Training augustus for your organism would be better, but you don't have to do it.

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: indu khatri [indu2287 at gmail.com]
Sent: Friday, December 21, 2012 10:58 AM
To: Daniel Ence
Cc: maker-devel at yandell-lab.org
Subject: Re: [maker-devel] query

Hii Daniel

It was failing for 1 contig only. The contig length is approx 1.5 Mb. Excluding that contig the run was successful. I am using RepeatMasker libraries only for masking the sequences. I used Fusarium graminearum species as Augustus model species.

I have one more query about Maker annotation results. Only augustus as gene predictor can be a good predictor for annotations or I have to retrain it using the previous results from first runs of MAKER in order to get validated gene models.

Thanks.


On Fri, Dec 21, 2012 at 9:23 AM, Daniel Ence <dence at genetics.utah.edu<mailto:dence at genetics.utah.edu>> wrote:
Hi Indu,

I'm going to echo Barry's request for more details about this problem too. Does augustus fail on more than one contig or does it fail repeatedly on the same contig? If its only contig, how big is that contig and is it possibly all masked out by repeatmasker? If you exclude that one contig, do the rest run successfully?  What are you using to mask the repeats in the genome? Which augustus model are you using, and how did you choose that model?

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah

15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: indu khatri [indu2287 at gmail.com<mailto:indu2287 at gmail.com>]
Sent: Thursday, December 20, 2012 12:41 PM
To: maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org>
Cc: Barry Moore; Daniel Ence
Subject: Fwd: [maker-devel] query


Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species I chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <barry.moore at genetics.utah.edu<mailto:barry.moore at genetics.utah.edu>> wrote:
Hi Indu,

The error output as Daniel suggested would be great and also a bit more detail on the problem.  Is it stalled on a long contig - how long?  How long has it been stalled for?  How many cpus are you running?  Are you running under MPI?  How big is the protein evidence file?  If you're using the altest function for your ESTs then it's running tblastx which is up to 10X slower than blastn with regular ESTs, is it possible that you're stuck on tblastx?

Finally, it can help if you isolate the problem a bit.  Can you run successfully on any of your contigs by running single contigs in your fasta file?  If it's stalled on a large contig, iteratively cut it in half and see if the problem isolates to one part of the contig.

B

On Dec 19, 2012, at 10:33 PM, indu khatri wrote:

 Hello Maker-devel
    Thanks for adding me to the list. I am new to this field. I have a query regarding maker annotation.
    I have assembled a fungal Genome with 1590 contigs and was trying to
    annotate it using MAKER pipeline. I only have paired end WGS sequence from
    Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
    any transcriptome data. I am using ESTs of a closer species for validation
    and similarly the protein sequences. I have started annotation but the
    problem is the pipeline gets stuck to the first contig on blastx step and
    doesn't move further. I could not make out the problem. Can you please help
    me out of this.

Thanks and regards

--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

_______________________________________________
maker-devel mailing list
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http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

Barry Moore
Research Scientist
Dept. of Human Genetics
University of Utah
Salt Lake City, UT 84112
--------------------------------------------
(801) 585-3543







--
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Institute of Microbial Technology,
Chandigarh-160036,
India




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Institute of Microbial Technology,
Chandigarh-160036,
India


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PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

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From carsonhh at gmail.com  Fri Dec 21 13:14:38 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 21 Dec 2012 14:14:38 -0500
Subject: [maker-devel] query
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49C08@mxb2.hg.genetics.utah.edu>
Message-ID: <CCFA1E38.17327%carsonhh@gmail.com>

Daniel is right. If it's another Fusarium species retraining probably isn't
necessary (distantly related fungi would probably need retraining though).
I'd recommend using GeneMark as well though.  It is very easy to train and
works well on Fungi species.  Could you include the version of Augustus you
are using and the sequence for the contig that fails when you send the
STDERR.

Thanks,
Carson


From:  Daniel Ence <dence at genetics.utah.edu>
Date:  Friday, 21 December, 2012 2:07 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] query

Hi Indu, Can you send the error output that Carson mentioned? Using a
closely related augustus model for your organism can be a good approach, if
that's the best you can do. Training augustus for your organism would be
better, but you don't have to do it.

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

From: indu khatri [indu2287 at gmail.com]
Sent: Friday, December 21, 2012 10:58 AM
To: Daniel Ence
Cc: maker-devel at yandell-lab.org
Subject: Re: [maker-devel] query

Hii Daniel 

It was failing for 1 contig only. The contig length is approx 1.5 Mb.
Excluding that contig the run was successful. I am using RepeatMasker
libraries only for masking the sequences. I used Fusarium graminearum
species as Augustus model species.

I have one more query about Maker annotation results. Only augustus as gene
predictor can be a good predictor for annotations or I have to retrain it
using the previous results from first runs of MAKER in order to get
validated gene models.

Thanks.


On Fri, Dec 21, 2012 at 9:23 AM, Daniel Ence <dence at genetics.utah.edu>
wrote:
> Hi Indu, 
> 
> I'm going to echo Barry's request for more details about this problem too.
> Does augustus fail on more than one contig or does it fail repeatedly on the
> same contig? If its only contig, how big is that contig and is it possibly all
> masked out by repeatmasker? If you exclude that one contig, do the rest run
> successfully?  What are you using to mask the repeats in the genome? Which
> augustus model are you using, and how did you choose that model?
> 
> Thanks,
> Daniel
> 
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> 
> From: indu khatri [indu2287 at gmail.com]
> Sent: Thursday, December 20, 2012 12:41 PM
> To: maker-devel at yandell-lab.org
> Cc: Barry Moore; Daniel Ence
> Subject: Fwd: [maker-devel] query
> 
> 
> Thanks Daniel and Barry for your reply.
> 
> I have sorted out that problem. It was due to very distant homolog species I
> chose for training.
> 
> But, I am still getting some errors while running MAKER.
> ERROR: Augustus failed
> ERROR: Failed while preparing ab-inits
> ERROR: Chunk failed at level:4, tier_type:0
> FAILED CONTIG
> 
> Can you please tell me what is the possible reason for this error?
> 
> Thanks in advance.
> 
> 
> 
> On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <barry.moore at genetics.utah.edu>
> wrote:
>> Hi Indu, 
>> 
>> The error output as Daniel suggested would be great and also a bit more
>> detail on the problem.  Is it stalled on a long contig - how long?  How long
>> has it been stalled for?  How many cpus are you running?  Are you running
>> under MPI?  How big is the protein evidence file?  If you're using the altest
>> function for your ESTs then it's running tblastx which is up to 10X slower
>> than blastn with regular ESTs, is it possible that you're stuck on tblastx?
>> 
>> Finally, it can help if you isolate the problem a bit.  Can you run
>> successfully on any of your contigs by running single contigs in your fasta
>> file?  If it's stalled on a large contig, iteratively cut it in half and see
>> if the problem isolates to one part of the contig.
>> 
>> B
>> 
>> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
>> 
>>>  Hello Maker-devel
>>>     Thanks for adding me to the list. I am new to this field. I have a query
>>> regarding maker annotation.
>>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>>     annotate it using MAKER pipeline. I only have paired end WGS sequence
>>> from
>>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
>>>     any transcriptome data. I am using ESTs of a closer species for
>>> validation
>>>     and similarly the protein sequences. I have started annotation but the
>>>     problem is the pipeline gets stuck to the first contig on blastx step
>>> and
>>>     doesn't move further. I could not make out the problem. Can you please
>>> help
>>>     me out of this.
>>> 
>>> Thanks and regards
>>> 
>>> -- 
>>>  
>>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e
>>> 6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
>>> PhD Research Fellow,
>>> C/o Dr. Srikrishna Subramanian
>>> Institute of Microbial Technology,
>>> Chandigarh-160036,
>>> India
>>> 
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> 
>> Barry Moore
>> Research Scientist
>> Dept. of Human Genetics
>> University of Utah
>> Salt Lake City, UT 84112
>> --------------------------------------------
>> (801) 585-3543
>> 
>> 
>> 
>> 
> 
> 
> 
> -- 
>  
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a
> &attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
> 
> 
> 
> 
> -- 
>  
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a
> &attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
> 
> 
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
> 



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 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

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From indu2287 at gmail.com  Wed Dec 26 03:34:43 2012
From: indu2287 at gmail.com (indu khatri)
Date: Wed, 26 Dec 2012 15:04:43 +0530
Subject: [maker-devel] query
In-Reply-To: <CCFA1E38.17327%carsonhh@gmail.com>
References: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49C08@mxb2.hg.genetics.utah.edu>
	<CCFA1E38.17327%carsonhh@gmail.com>
Message-ID: <CAFCapZsuT4TaT1dDk3=C0QjtaJxK0-iBQ_HR-n2wDk6kAGiLFw@mail.gmail.com>

Thanks all.

The maker is now running properly. I don't know where the problem actually
was. I re install everything and now its working.

I'll let you know if there are any problems in future.

Thanks!


On Sat, Dec 22, 2012 at 12:44 AM, Carson Holt <carsonhh at gmail.com> wrote:

> Daniel is right. If it's another Fusarium species retraining probably
> isn't necessary (distantly related fungi would probably need retraining
> though).  I'd recommend using GeneMark as well though.  It is very easy to
> train and works well on Fungi species.  Could you include the version of
> Augustus you are using and the sequence for the contig that fails when you
> send the STDERR.
>
> Thanks,
> Carson
>
>
> From: Daniel Ence <dence at genetics.utah.edu>
> Date: Friday, 21 December, 2012 2:07 PM
> To: "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
> Subject: Re: [maker-devel] query
>
> Hi Indu, Can you send the error output that Carson mentioned? Using a
> closely related augustus model for your organism can be a good approach, if
> that's the best you can do. Training augustus for your organism would be
> better, but you don't have to do it.
>
> Thanks,
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ------------------------------
> *From:* indu khatri [indu2287 at gmail.com]
> *Sent:* Friday, December 21, 2012 10:58 AM
> *To:* Daniel Ence
> *Cc:* maker-devel at yandell-lab.org
> *Subject:* Re: [maker-devel] query
>
> Hii Daniel
>
> It was failing for 1 contig only. The contig length is approx 1.5 Mb.
> Excluding that contig the run was successful. I am using RepeatMasker
> libraries only for masking the sequences. I used Fusarium graminearum
> species as Augustus model species.
>
> I have one more query about Maker annotation results. Only augustus as
> gene predictor can be a good predictor for annotations or I have to retrain
> it using the previous results from first runs of MAKER in order to get
> validated gene models.
>
> Thanks.
>
>
> On Fri, Dec 21, 2012 at 9:23 AM, Daniel Ence <dence at genetics.utah.edu>wrote:
>
>> Hi Indu,
>>
>> I'm going to echo Barry's request for more details about this problem
>> too. Does augustus fail on more than one contig or does it fail repeatedly
>> on the same contig? If its only contig, how big is that contig and is it
>> possibly all masked out by repeatmasker? If you exclude that one contig, do
>> the rest run successfully?  What are you using to mask the repeats in the
>> genome? Which augustus model are you using, and how did you choose that
>> model?
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>>
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ------------------------------
>> *From:* indu khatri [indu2287 at gmail.com]
>> *Sent:* Thursday, December 20, 2012 12:41 PM
>> *To:* maker-devel at yandell-lab.org
>> *Cc:* Barry Moore; Daniel Ence
>> *Subject:* Fwd: [maker-devel] query
>>
>>
>> Thanks Daniel and Barry for your reply.
>>
>> I have sorted out that problem. It was due to very distant homolog
>> species I chose for training.
>>
>> But, I am still getting some errors while running MAKER.
>> ERROR: Augustus failed
>> ERROR: Failed while preparing ab-inits
>> ERROR: Chunk failed at level:4, tier_type:0
>> FAILED CONTIG
>>
>> Can you please tell me what is the possible reason for this error?
>>
>> Thanks in advance.
>>
>>
>>
>> On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <
>> barry.moore at genetics.utah.edu> wrote:
>>
>>> Hi Indu,
>>>
>>> The error output as Daniel suggested would be great and also a bit more
>>> detail on the problem.  Is it stalled on a long contig - how long?  How
>>> long has it been stalled for?  How many cpus are you running?  Are you
>>> running under MPI?  How big is the protein evidence file?  If you're using
>>> the altest function for your ESTs then it's running tblastx which is up to
>>> 10X slower than blastn with regular ESTs, is it possible that you're stuck
>>> on tblastx?
>>>
>>> Finally, it can help if you isolate the problem a bit.  Can you run
>>> successfully on any of your contigs by running single contigs in your fasta
>>> file?  If it's stalled on a large contig, iteratively cut it in half and
>>> see if the problem isolates to one part of the contig.
>>>
>>> B
>>>
>>> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
>>>
>>>  Hello Maker-devel
>>>     Thanks for adding me to the list. I am new to this field. I have a
>>> query regarding maker annotation.
>>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>>     annotate it using MAKER pipeline. I only have paired end WGS
>>> sequence from
>>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont
>>> have
>>>     any transcriptome data. I am using ESTs of a closer species for
>>> validation
>>>     and similarly the protein sequences. I have started annotation but
>>> the
>>>     problem is the pipeline gets stuck to the first contig on blastx
>>> step and
>>>     doesn't move further. I could not make out the problem. Can you
>>> please help
>>>     me out of this.
>>>
>>> Thanks and regards
>>>
>>> --
>>>
>>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
>>> Khatri
>>> PhD Research Fellow,
>>> C/o Dr. Srikrishna Subramanian
>>> Institute of Microbial Technology,
>>> Chandigarh-160036,
>>> India
>>>
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>>
>>>
>>> Barry Moore
>>> Research Scientist
>>> Dept. of Human Genetics
>>> University of Utah
>>> Salt Lake City, UT 84112
>>> --------------------------------------------
>>> (801) 585-3543
>>>
>>>
>>>
>>>
>>>
>>
>>
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>>
>
>
> _______________________________________________ maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>



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<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>
Indu
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From kapeelc at gmail.com  Mon Dec  3 09:55:20 2012
From: kapeelc at gmail.com (Kapeel Chougule)
Date: Mon, 3 Dec 2012 09:55:20 -0700
Subject: [maker-devel] Maker error message
In-Reply-To: <CCDCDA68.16600%carsonhh@gmail.com>
References: <CA+DOtefhs9BMWn-S2LPv_MkUvikM446jvuxRqfqUax11hhNp3g@mail.gmail.com>
	<CCDCDA68.16600%carsonhh@gmail.com>
Message-ID: <CA+DOtefF6sYrMvnVuQO8P75E5ekfQ1uQaAkvhmuTZ43bBdan9g@mail.gmail.com>

Hi Carson,

The MAKER devel version worked like a charm on the failed chromosomes. But
the MAKER 2.2.6 ended up giving me the same ERROR when I re-run it.

Thank you,

Kapeel

On Thu, Nov 29, 2012 at 7:52 AM, Carson Holt <carsonhh at gmail.com> wrote:

> There should normally be more error message than that.  The module used to
> capture the error returns the string "Died" without an end line character
> when there is a problem capturing the STDERR of the failure (and I see that
> phrase here), so could you run this again and see if it produces a
> different message the second time.  Also I'm going to send you instructions
> on download the development version of MAKER in a separate message (off
> list).  It is easier for me to make changes and have you test them
> immediately that way.  Also there are already some bug fixes in the devel
> version so it's good to rule those out.
>
> Thanks,
> Carson
>
>
> From: Kapeel Chougule <kapeelc at gmail.com>
> Date: Wednesday, 28 November, 2012 3:15 PM
> To: "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
> Subject: Re: [maker-devel] Maker error message
>
> Attached is the maker_opts file. I am using my own customized repeat
> library and repeat_protein files. The length of the identifiers was
> shortened to < 50 characters as in my previous run it complained for
> identifiers having > 50 characters.
>
> Thank you,
>
> Kapeel
> On Wed, Nov 28, 2012 at 12:25 PM, Daniel Ence <dence at genetics.utah.edu>wrote:
>
>> Hi Kapeel,
>>
>> Please keep this discussion on the maker-devel group, so we can get
>> everyone's input to help resolve this issue with maker.
>>
>> Can you sen me the maker_opts file that you were using? The options that
>> might be relevant include the libraries you were giving repeatrunner and
>> repeatmasker.
>>
>> Thanks,
>> Daniel
>>
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: kapeelc at gmail.com [kapeelc at gmail.com]
>> Sent: Wednesday, November 28, 2012 11:39 AM
>> To: Daniel Ence
>> Subject: Re: Maker error message
>>
>> Hi Daniel,
>>
>> Here is the output around the error:
>>
>> j_size:94   current j:76
>>  j_size:94   current j:77
>>  j_size:94   current j:78
>>  j_size:94   current j:79
>>  j_size:94   current j:80
>>  j_size:94   current j:81
>>  j_size:94   current j:82
>>  j_size:94   current j:83
>>  j_size:94   current j:84
>>  j_size:94   current j:85
>>  j_size:94   current j:86
>>  j_size:94   current j:87
>>  j_size:94   current j:88
>>  j_size:94   current j:89
>>  j_size:94   current j:90
>>  j_size:94   current j:91
>>  j_size:94   current j:92
>>  j_size:94   current j:93
>> ...finished clustering.
>> re reading repeat masker report.
>>
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/Chr5.64.PReDa_121015_short%2Efasta.specific.out
>> re reading blast report.
>>
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/Chr5.64.TE_protein_db_121015_short_header%2Efasta.repeatrunner
>> deleted:1 hits
>> in cluster::shadow_cluster...
>> DiedERROR: Failed while processing all repeats
>> ERROR: Chunk failed at level:3, tier_type:1
>> FAILED CONTIG:Chr5
>>
>> ERROR: Chunk failed at level:2, tier_type:0
>> FAILED CONTIG:Chr5
>>
>>
>>
>>
>> --Next Contig--
>>
>> Processing run.log file...
>>
>> Maker is now finished!!!
>>
>>
>> For RepeatMasker I am using wublast as the search engine.
>>
>> The run log had this:
>>
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.62
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.62
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> DIED    RANK    0
>> DIED    COUNT   2
>>
>> Is there way to skip the the failed chunk and move forward??
>>
>> Thanks
>>
>> Kapeel
>>
>> <quote author='Daniel Ence'>
>> Hi Kapeel,
>>
>> I think we need some more information about the settings that you're
>> running
>> maker with. Can you give more of the output around the error? Also, since
>> maker is dying during the repeatmasking stage, can you tell us more about
>> the settings you have for RepeatMasker?
>>
>>
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________
>> From: maker-devel-bounces at yandell-lab.org
>> [maker-devel-bounces at yandell-lab.org] on behalf of Kapeel Chougule
>> [kapeelc at gmail.com]
>> Sent: Tuesday, November 27, 2012 6:23 PM
>> To: maker-devel at yandell-lab.org
>> Subject: [maker-devel] Maker error message
>>
>> Hi,
>>
>> I recently ran into this error for chr5. I am using maker 2.26 .
>>
>> DiedERROR: Failed while processing all repeats
>> ERROR: Chunk failed at level:3, tier_type:1
>> FAILED CONTIG:Chr5
>>
>> ERROR: Chunk failed at level:2, tier_type:0
>> FAILED CONTIG:Chr5
>>
>> Could someone help me understand this error and why its happening?
>>
>> Thanks,
>>
>> --
>>
>> Kapeel Chougule
>> Systems Programmer
>> Arizona Genomics Institute (AGI)
>> Thomas W. Keating Bioresearch Building
>> University of Arizona
>> 1657 E. Helen Street
>> Tucson, AZ 85719
>> www.genome.arizona.edu<http://www.genome.arizona.edu>
>>
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>> </quote>
>> Quoted from:
>>
>> http://gmod.827538.n3.nabble.com/Maker-error-message-tp4027051p4027052.html
>>
>
>
>
> --
> *
>
> Kapeel Chougule
> Systems Programmer
> Arizona Genomics Institute (AGI)
> Thomas W. Keating Bioresearch Building
> University of Arizona
> 1657 E. Helen Street
> Tucson, AZ 85719
> www.genome.arizona.edu
> *
> _______________________________________________ maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>



-- 
*

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719
www.genome.arizona.edu
*
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From carsonhh at gmail.com  Mon Dec  3 12:28:40 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Mon, 03 Dec 2012 14:28:40 -0500
Subject: [maker-devel] Maker error message
In-Reply-To: <CA+DOtefF6sYrMvnVuQO8P75E5ekfQ1uQaAkvhmuTZ43bBdan9g@mail.gmail.com>
Message-ID: <CCE26754.16702%carsonhh@gmail.com>

Good to know.  It must be covered by an existing bug fix.  I'm going to wrap
up the devel version as 2.27 in the next couple days and put it online.

Thanks,
Carson



From:  Kapeel Chougule <kapeelc at gmail.com>
Date:  Monday, 3 December, 2012 11:55 AM
To:  Carson Holt <carsonhh at gmail.com>
Cc:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] Maker error message

Hi Carson,

The MAKER devel version worked like a charm on the failed chromosomes. But
the MAKER 2.2.6 ended up giving me the same ERROR when I re-run it.

Thank you,

Kapeel

On Thu, Nov 29, 2012 at 7:52 AM, Carson Holt <carsonhh at gmail.com> wrote:
> There should normally be more error message than that.  The module used to
> capture the error returns the string "Died" without an end line character when
> there is a problem capturing the STDERR of the failure (and I see that phrase
> here), so could you run this again and see if it produces a different message
> the second time.  Also I'm going to send you instructions on download the
> development version of MAKER in a separate message (off list).  It is easier
> for me to make changes and have you test them immediately that way.  Also
> there are already some bug fixes in the devel version so it's good to rule
> those out.
> 
> Thanks,
> Carson
> 
> 
> From:  Kapeel Chougule <kapeelc at gmail.com>
> Date:  Wednesday, 28 November, 2012 3:15 PM
> To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
> Subject:  Re: [maker-devel] Maker error message
> 
> Attached is the maker_opts file. I am using my own customized repeat library
> and repeat_protein files. The length of the identifiers was shortened to < 50
> characters as in my previous run it complained for identifiers having > 50
> characters.  
> 
> Thank you,
> 
> Kapeel
> On Wed, Nov 28, 2012 at 12:25 PM, Daniel Ence <dence at genetics.utah.edu> wrote:
>> Hi Kapeel, 
>> 
>> Please keep this discussion on the maker-devel group, so we can get
>> everyone's input to help resolve this issue with maker.
>> 
>> Can you sen me the maker_opts file that you were using? The options that
>> might be relevant include the libraries you were giving repeatrunner and
>> repeatmasker.
>> 
>> Thanks,
>> Daniel 
>> 
>> 
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: kapeelc at gmail.com [kapeelc at gmail.com]
>> Sent: Wednesday, November 28, 2012 11:39 AM
>> To: Daniel Ence
>> Subject: Re: Maker error message
>> 
>> Hi Daniel,
>> 
>> Here is the output around the error:
>> 
>> j_size:94   current j:76
>>  j_size:94   current j:77
>>  j_size:94   current j:78
>>  j_size:94   current j:79
>>  j_size:94   current j:80
>>  j_size:94   current j:81
>>  j_size:94   current j:82
>>  j_size:94   current j:83
>>  j_size:94   current j:84
>>  j_size:94   current j:85
>>  j_size:94   current j:86
>>  j_size:94   current j:87
>>  j_size:94   current j:88
>>  j_size:94   current j:89
>>  j_size:94   current j:90
>>  j_size:94   current j:91
>>  j_size:94   current j:92
>>  j_size:94   current j:93
>> ...finished clustering.
>> re reading repeat masker report.
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/Chr5.64.PReDa_121015_short%2Efasta.specif
>> ic.out
>> re reading blast report.
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/Chr5.64.TE_protein_db_121015_short_header
>> %2Efasta.repeatrunner
>> deleted:1 hits
>> in cluster::shadow_cluster...
>> DiedERROR: Failed while processing all repeats
>> ERROR: Chunk failed at level:3, tier_type:1
>> FAILED CONTIG:Chr5
>> 
>> ERROR: Chunk failed at level:2, tier_type:0
>> FAILED CONTIG:Chr5
>> 
>> 
>> 
>> 
>> --Next Contig--
>> 
>> Processing run.log file...
>> 
>> Maker is now finished!!!
>> 
>> 
>> For RepeatMasker I am using wublast as the search engine.
>> 
>> The run log had this:
>> 
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.62
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.62
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> DIED    RANK    0
>> DIED    COUNT   2
>> 
>> Is there way to skip the the failed chunk and move forward??
>> 
>> Thanks
>> 
>> Kapeel
>> 
>> <quote author='Daniel Ence'>
>> Hi Kapeel,
>> 
>> I think we need some more information about the settings that you're running
>> maker with. Can you give more of the output around the error? Also, since
>> maker is dying during the repeatmasking stage, can you tell us more about
>> the settings you have for RepeatMasker?
>> 
>> 
>> 
>> Thanks,
>> Daniel
>> 
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________
>> From: maker-devel-bounces at yandell-lab.org
>> [maker-devel-bounces at yandell-lab.org] on behalf of Kapeel Chougule
>> [kapeelc at gmail.com]
>> Sent: Tuesday, November 27, 2012 6:23 PM
>> To: maker-devel at yandell-lab.org
>> Subject: [maker-devel] Maker error message
>> 
>> Hi,
>> 
>> I recently ran into this error for chr5. I am using maker 2.26 .
>> 
>> DiedERROR: Failed while processing all repeats
>> ERROR: Chunk failed at level:3, tier_type:1
>> FAILED CONTIG:Chr5
>> 
>> ERROR: Chunk failed at level:2, tier_type:0
>> FAILED CONTIG:Chr5
>> 
>> Could someone help me understand this error and why its happening?
>> 
>> Thanks,
>> 
>> --
>> 
>> Kapeel Chougule
>> Systems Programmer
>> Arizona Genomics Institute (AGI)
>> Thomas W. Keating Bioresearch Building
>> University of Arizona
>> 1657 E. Helen Street
>> Tucson, AZ 85719
>> www.genome.arizona.edu <http://www.genome.arizona.edu>
>> <http://www.genome.arizona.edu>
>> 
>> 
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> 
>> </quote>
>> Quoted from:
>> http://gmod.827538.n3.nabble.com/Maker-error-message-tp4027051p4027052.html
> 
> 
> 
> -- 
> 
> Kapeel Chougule
> Systems Programmer
> Arizona Genomics Institute (AGI)
> Thomas W. Keating Bioresearch Building
> University of Arizona
> 1657 E. Helen Street
> Tucson, AZ 85719 
> www.genome.arizona.edu <http://www.genome.arizona.edu>
> 
> _______________________________________________ maker-devel mailing list
> maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/mak
> er-devel_yandell-lab.org



-- 

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719   
www.genome.arizona.edu <http://www.genome.arizona.edu>



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From parulk at caltech.edu  Tue Dec  4 17:27:18 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Tue, 4 Dec 2012 16:27:18 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCDD765C.16680%carsonhh@gmail.com>
References: <CCDD765C.16680%carsonhh@gmail.com>
Message-ID: <4049.131.215.15.234.1354667238.squirrel@webmail.caltech.edu>

Dear Carson,

Thanks once again, we have limited experimental data with very short ESTs.
CEGMA is useful for us to gauge our gene-model.
On a different note to re-annotate genome(post evidence based
prediction(used as training dataset)and abinitio gene-prediction). Here
are the control parameters I am using with AED score set to 0.5, however I
get predictions that includes the ones with AED score of 1.00 in resulting
gff3 file. Though I do see the number of genes reduced to 1/3 of initial
gff3 file.

#-----Genome (Required for De-Novo Annotation)
genome=Scaffold1.fa #genome sequence file in fasta format
organism_type=eukaryotic #eukaryotic or prokaryotic. Default is eukaryotic

#-----Re-annotation Using MAKER Derived GFF3
genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 = no
protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 = no

#-----MAKER Behavior Options
AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by 0
and 1)

Thanks and regards,
Parul Kudtarkar

> Wow 330,000 is a lot. a large portion of genes are likely to be partial at
> best.  You should seriously consider using mRNAseq to capture those by
> using maker's est_gff option to pass in results from cufflinks or trinity.
>  Also I wouldn't even try to annotate contigs less than 10kb in size, just
> have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>
> Thanks,
> Carson
>
>
>
>
> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>
>>Thanks for the guidance Carson, total contig size is 330,611 with N50 of
>>39.17kb. I agree we have short ESTs. So this is the possible reason when
>>filtering based on AED score 0.75 there are no gene models predicted
>>despite the model_gff file has few genes with scores less than 0.75?
>>
>>Thanks and regards,
>>Parul Kudtarkar
>>
>>> There are certain characteristics that are apparent in this contig.
>>First
>>> it seems to be repeat rich with a very low gene density.  You also have
>>very short ESTs, and because of the lengths you are probably getting
>>many
>>> of them to align spuriously which produces very short gene models that
>>are
>>> more than likely false positives or at the very least just a piece of a
>>gene.  I would turn off est2genome as a predictor for this reason unless
>>you can get longer EST assemblies (i.e. From mRNAseq).    Your protein
>>alignments also seem to be few and far between.  You probably need to
>>add
>>> more proteins from a couple of related species, and you might consider
>>using protein2genome rather than est2genome as a predictor if you are
>>still working to generate a training set. Also est2genome produced
>>models
>>> almost always have an AED score near 0 so mixing est2genome with the
>>AED_threshold with such limited protein support does create an
>>artificial
>>> bias to get back very short and incomplete models.
>>>
>>> How many contigs do you have in total and what is the N50 value for the
>>assembly? If you have a large number of very short contigs, you will get
>>very inflated gene counts because you get genes split across contigs and
>>many contigs tend t be subtle rearrangements of other contigs just
>>assembled in a slightly different way (so you can get bits and pieces of
>>the same genes just rearranged).  This scenario is another confounding
>>factor if using the est2genome predictor with short ESTs.  I would
>>recommend running CEGMA to get an estimate for the genome completeness
>>as
>>> well as get an estimate of fragmentation as one of the statistics
>>produced
>>> is a percent of genes that are found complete (end to end) vs those
>>> that
>>are partial.  CEGMA identifies house keeping genes that tend to be
>>shorter
>>> and less intron rich than other genes in the genome, so if CEGMA gives
>>> a
>>high partial percentage and a low complete percentage, then this pattern
>>can be expected to be even more exaggerated for other genes in the
>>genome.
>>>
>>> If your genome is highly fragmented or proteins do not align well then
>>there are other strategies.  For example, some vertebrate genomes end up
>>having extremely fragmented assemblies (on the order of 100,000
>>contigs),
>>> and if they are distantly related to other annotated species few
>>proteins
>>> may align to the contigs because the introns in the alignments tend to
>>be
>>> so long and exons so short that it pushes down the significance scores
>>too
>>> much.  In those cases heavy mRNAseq seems to be the best if not only
>>> way
>>to get enough evidence to stitch gene models together.
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>
>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>
>>>>Dear Carson and Daniel,
>>>>Thanks. I ran sample file for filtering genes based on AED score. The
>>input gff3 file was provided to option model_pred(see attached file
>>Scaffold1.gff), the cutoff AED score was set to 0.75. There are at least
>>>> 5
>>>>genes with AED score less than 0.75. However there were no genes
>>>> predicted
>>>>in the output file(see attached file Scaffold1_out). I have also
>>attached
>>>>the maker_opts.ctl. Could you please advice on this.
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>> Use the AED_threshold option in the maker_opts.ctl file if you just
>>>>>want
>>>>> to restrict final gene models to close matches directly within maker.
>>>>>On
>>>>> the other hand, if you are trying to build a dataset for training
>>>>> gene
>>predictors, use the maker2zff script for generating a filtered dataset
>>>>>for
>>>>> SNAP training.  There are a number of filters available. Just call
>>>>> the
>>script once without parameters to see the options.
>>>>> Thanks,
>>>>> Carson
>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>Hi Parul,
>>>>>>I think the way you described (with the maker_opts.ctl file) is how
>>you
>>>>>>want to proceed. You still need to give the genome too.
>>>>>>Daniel
>>>>>>Daniel Ence
>>>>>>Graduate Student
>>>>>>Eccles Institute of Human Genetics
>>>>>>University of Utah
>>>>>>15 North 2030 East, Room 2100
>>>>>>Salt Lake City, UT 84112-5330
>>>>>>________________________________________
>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
>>[parulk at caltech.edu]
>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>To: Parul Kudtarkar
>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>Also, are there any other parameters that are required when filtering
>>based on AED score?
>>>>>>> Hello Carson,
>>>>>>> Just to confirm, Is there a script that would filter gene models at
>>specific AED score.
>>>>>>> Alternatively if I were to do this within maker with regards to
>>>>>>>parameters
>>>>>>> in maker_opts.ctl file I would have to provide my predicted genes
>>>>>>>gff3
>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and 1 is
>>worst
>>>>>>>> as
>>>>>>>> it is a distance metric.  You can use the AED_threshold parameter
>>to
>>>>>>>> require better matching to the evidence by setting it closer to 0.
>>>>>>>>You
>>>>>>>> can
>>>>>>>> also try to increase protein homology evidence as some of your
>>calls
>>>>>>>>may
>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>> --Carson
>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>>Dear Maker community,
>>>>>>>>>For gene-prediction I get training data-set from evidence based
>>prediction, I use this data-set to train SNAP as well as Augustus
>>predictions, followed by boot-strapping. I would typically expect
>>20-30K
>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>> indicating
>>>>>>>>> too
>>>>>>>>>many false positives. Is there a way to further refine these
>>predication/script to retain predictions with AED score 1 and if
>>yes
>>>>>>>>>how
>>>>>>>>>to go about this?
>>>>>>>>>Thanks and regards,
>>>>>>>>>Parul Kudtarkar
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>>>_______________________________________________
>>>>>>>>>maker-devel mailing list
>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>>>>>>>>>.o
>>rg
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>>>_______________________________________________
>>>>>>maker-devel mailing list
>>>>>>maker-devel at box290.bluehost.com
>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.or
>>>>>>g
>>_______________________________________________
>>>>>>maker-devel mailing list
>>>>>>maker-devel at box290.bluehost.com
>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.or
>>>>>>g
>>>>> _______________________________________________
>>>>> maker-devel mailing list
>>>>> maker-devel at box290.bluehost.com
>>>>>
>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>>
>>>
>>>
>>
>>
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org
>>
>>
>>
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From parulk at caltech.edu  Tue Dec  4 17:39:51 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Tue, 4 Dec 2012 16:39:51 -0800 (PST)
Subject: [maker-devel] Maker Behavior Options
Message-ID: <4249.131.215.15.234.1354667991.squirrel@webmail.caltech.edu>

Hello,

I would presume min_contig=1 here is equal to contig size of 1KB?
min_contig=1

Thanks and regards,
Parul Kudtarkar

--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From dence at genetics.utah.edu  Wed Dec  5 08:39:36 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Wed, 5 Dec 2012 15:39:36 +0000
Subject: [maker-devel] Maker Behavior Options
In-Reply-To: <4249.131.215.15.234.1354667991.squirrel@webmail.caltech.edu>
References: <4249.131.215.15.234.1354667991.squirrel@webmail.caltech.edu>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB589F@mxb2.hg.genetics.utah.edu>

Hi Parul, 

The "1" there actually means 1 bp. The default setting in maker is to allow contigs of any length. 


Thanks
Daniel 

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________________
From: maker-devel-bounces at yandell-lab.org [maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar [parulk at caltech.edu]
Sent: Tuesday, December 04, 2012 5:39 PM
To: maker-devel at yandell-lab.org
Subject: [maker-devel] Maker Behavior Options

Hello,

I would presume min_contig=1 here is equal to contig size of 1KB?
min_contig=1

Thanks and regards,
Parul Kudtarkar

--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org


_______________________________________________
maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org



From carsonhh at gmail.com  Wed Dec  5 08:44:52 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Wed, 05 Dec 2012 10:44:52 -0500
Subject: [maker-devel] AED score
In-Reply-To: <4049.131.215.15.234.1354667238.squirrel@webmail.caltech.edu>
Message-ID: <CCE4D52D.169DA%carsonhh@gmail.com>

You should always get all predictions, but should only get models
(match/match_part) with AED scores less than 0.5.  You should never get
models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
keep_preds set.

Do you have keeps_preds set or gene models with AED values above your
threshold (not match/match_part features)?  If the first one is the case,
just set it to 0.  If the second one in the case, could you send me
example GFF3?

Thanks,
Carson



On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Carson,
>
>Thanks once again, we have limited experimental data with very short ESTs.
>CEGMA is useful for us to gauge our gene-model.
>On a different note to re-annotate genome(post evidence based
>prediction(used as training dataset)and abinitio gene-prediction). Here
>are the control parameters I am using with AED score set to 0.5, however I
>get predictions that includes the ones with AED score of 1.00 in resulting
>gff3 file. Though I do see the number of genes reduced to 1/3 of initial
>gff3 file.
>
>#-----Genome (Required for De-Novo Annotation)
>genome=Scaffold1.fa #genome sequence file in fasta format
>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is eukaryotic
>
>#-----Re-annotation Using MAKER Derived GFF3
>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
>est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 = no
>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
>other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 = no
>
>#-----MAKER Behavior Options
>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by 0
>and 1)
>
>Thanks and regards,
>Parul Kudtarkar
>
>> Wow 330,000 is a lot. a large portion of genes are likely to be partial
>>at
>> best.  You should seriously consider using mRNAseq to capture those by
>> using maker's est_gff option to pass in results from cufflinks or
>>trinity.
>>  Also I wouldn't even try to annotate contigs less than 10kb in size,
>>just
>> have maker skip them by setting the min_contig filter in the
>> maker_opts.ctl file.
>>
>> Thanks,
>> Carson
>>
>>
>>
>>
>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>
>>>Thanks for the guidance Carson, total contig size is 330,611 with N50 of
>>>39.17kb. I agree we have short ESTs. So this is the possible reason when
>>>filtering based on AED score 0.75 there are no gene models predicted
>>>despite the model_gff file has few genes with scores less than 0.75?
>>>
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>
>>>> There are certain characteristics that are apparent in this contig.
>>>First
>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>have
>>>very short ESTs, and because of the lengths you are probably getting
>>>many
>>>> of them to align spuriously which produces very short gene models that
>>>are
>>>> more than likely false positives or at the very least just a piece of
>>>>a
>>>gene.  I would turn off est2genome as a predictor for this reason unless
>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your protein
>>>alignments also seem to be few and far between.  You probably need to
>>>add
>>>> more proteins from a couple of related species, and you might consider
>>>using protein2genome rather than est2genome as a predictor if you are
>>>still working to generate a training set. Also est2genome produced
>>>models
>>>> almost always have an AED score near 0 so mixing est2genome with the
>>>AED_threshold with such limited protein support does create an
>>>artificial
>>>> bias to get back very short and incomplete models.
>>>>
>>>> How many contigs do you have in total and what is the N50 value for
>>>>the
>>>assembly? If you have a large number of very short contigs, you will get
>>>very inflated gene counts because you get genes split across contigs and
>>>many contigs tend t be subtle rearrangements of other contigs just
>>>assembled in a slightly different way (so you can get bits and pieces of
>>>the same genes just rearranged).  This scenario is another confounding
>>>factor if using the est2genome predictor with short ESTs.  I would
>>>recommend running CEGMA to get an estimate for the genome completeness
>>>as
>>>> well as get an estimate of fragmentation as one of the statistics
>>>produced
>>>> is a percent of genes that are found complete (end to end) vs those
>>>> that
>>>are partial.  CEGMA identifies house keeping genes that tend to be
>>>shorter
>>>> and less intron rich than other genes in the genome, so if CEGMA gives
>>>> a
>>>high partial percentage and a low complete percentage, then this pattern
>>>can be expected to be even more exaggerated for other genes in the
>>>genome.
>>>>
>>>> If your genome is highly fragmented or proteins do not align well then
>>>there are other strategies.  For example, some vertebrate genomes end up
>>>having extremely fragmented assemblies (on the order of 100,000
>>>contigs),
>>>> and if they are distantly related to other annotated species few
>>>proteins
>>>> may align to the contigs because the introns in the alignments tend to
>>>be
>>>> so long and exons so short that it pushes down the significance scores
>>>too
>>>> much.  In those cases heavy mRNAseq seems to be the best if not only
>>>> way
>>>to get enough evidence to stitch gene models together.
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>
>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>
>>>>>Dear Carson and Daniel,
>>>>>Thanks. I ran sample file for filtering genes based on AED score. The
>>>input gff3 file was provided to option model_pred(see attached file
>>>Scaffold1.gff), the cutoff AED score was set to 0.75. There are at least
>>>>> 5
>>>>>genes with AED score less than 0.75. However there were no genes
>>>>> predicted
>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>attached
>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you just
>>>>>>want
>>>>>> to restrict final gene models to close matches directly within
>>>>>>maker.
>>>>>>On
>>>>>> the other hand, if you are trying to build a dataset for training
>>>>>> gene
>>>predictors, use the maker2zff script for generating a filtered dataset
>>>>>>for
>>>>>> SNAP training.  There are a number of filters available. Just call
>>>>>> the
>>>script once without parameters to see the options.
>>>>>> Thanks,
>>>>>> Carson
>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>>Hi Parul,
>>>>>>>I think the way you described (with the maker_opts.ctl file) is how
>>>you
>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>Daniel
>>>>>>>Daniel Ence
>>>>>>>Graduate Student
>>>>>>>Eccles Institute of Human Genetics
>>>>>>>University of Utah
>>>>>>>15 North 2030 East, Room 2100
>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>________________________________________
>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
>>>[parulk at caltech.edu]
>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>To: Parul Kudtarkar
>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>Also, are there any other parameters that are required when
>>>>>>>filtering
>>>based on AED score?
>>>>>>>> Hello Carson,
>>>>>>>> Just to confirm, Is there a script that would filter gene models
>>>>>>>>at
>>>specific AED score.
>>>>>>>> Alternatively if I were to do this within maker with regards to
>>>>>>>>parameters
>>>>>>>> in maker_opts.ctl file I would have to provide my predicted genes
>>>>>>>>gff3
>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and 1 is
>>>worst
>>>>>>>>> as
>>>>>>>>> it is a distance metric.  You can use the AED_threshold parameter
>>>to
>>>>>>>>> require better matching to the evidence by setting it closer to
>>>>>>>>>0.
>>>>>>>>>You
>>>>>>>>> can
>>>>>>>>> also try to increase protein homology evidence as some of your
>>>calls
>>>>>>>>>may
>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>> --Carson
>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>wrote:
>>>>>>>>>>Dear Maker community,
>>>>>>>>>>For gene-prediction I get training data-set from evidence based
>>>prediction, I use this data-set to train SNAP as well as Augustus
>>>predictions, followed by boot-strapping. I would typically expect
>>>20-30K
>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>> indicating
>>>>>>>>>> too
>>>>>>>>>>many false positives. Is there a way to further refine these
>>>predication/script to retain predictions with AED score 1 and if
>>>yes
>>>>>>>>>>how
>>>>>>>>>>to go about this?
>>>>>>>>>>Thanks and regards,
>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>--
>>>>>>>>>>Scientific Programmer
>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>Beckman Institute,
>>>>>>>>>>California Institute of Technology
>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>ab
>>>>>>>>>>.o
>>>rg
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>>>_______________________________________________
>>>>>>>maker-devel mailing list
>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.
>>>>>>>or
>>>>>>>g
>>>_______________________________________________
>>>>>>>maker-devel mailing list
>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.
>>>>>>>or
>>>>>>>g
>>>>>> _______________________________________________
>>>>>> maker-devel mailing list
>>>>>> maker-devel at box290.bluehost.com
>>>>>>
>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.o
>>>>>>rg
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>>
>>>>
>>>>
>>>
>>>
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>>>
>>>
>>>
>>>
>>
>>
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>





From parulk at caltech.edu  Wed Dec  5 13:04:35 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Wed, 5 Dec 2012 12:04:35 -0800 (PST)
Subject: [maker-devel] Maker Behavior Options
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB589F@mxb2.hg.genetics.utah.edu>
References: <4249.131.215.15.234.1354667991.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB589F@mxb2.hg.genetics.utah.edu>
Message-ID: <1863.131.215.15.234.1354737875.squirrel@webmail.caltech.edu>

Dear Daniel,

Thanks for a quick response.

Thanks and regards,
Parul Kudtarkar

> Hi Parul,
>
> The "1" there actually means 1 bp. The default setting in maker is to
> allow contigs of any length.
>
>
> Thanks
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: maker-devel-bounces at yandell-lab.org
> [maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
> [parulk at caltech.edu]
> Sent: Tuesday, December 04, 2012 5:39 PM
> To: maker-devel at yandell-lab.org
> Subject: [maker-devel] Maker Behavior Options
>
> Hello,
>
> I would presume min_contig=1 here is equal to contig size of 1KB?
> min_contig=1
>
> Thanks and regards,
> Parul Kudtarkar
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From carsonhh at gmail.com  Wed Dec  5 13:31:26 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Wed, 05 Dec 2012 15:31:26 -0500
Subject: [maker-devel] AED score
In-Reply-To: <1853.131.215.15.234.1354737826.squirrel@webmail.caltech.edu>
Message-ID: <CCE516E9.16A20%carsonhh@gmail.com>

Your output has no genes.  They've all been filtered out.  The gene
predictions are left for reference purposes, but there are no gene models
in the file.  You need to look at the type columns in the GFF3 file -->
match/match_part features are evidence and reference data but not models.
All models will have types gene/mRNA/exon/CDS.  For example if you just
want gene models in your file you can use the gff3_merge script with the
-g option, and it will only print out the gene models.

I think you may be misinterpreting what is happening at different steps,
as well as how to read the result files.  Could you give me a detailed
explanation of what you expect to get back together with your control
files and I can walk you through the configuration, and indicate what to
expect.  Also what was the report like from CEGMA. Could you include the
report file that shows how complete your genome is and how fragmented it
is?  

Thanks,
Carson



On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Carson,
>
>Thanks for a quick response. keep_preds is set to 0
>Though for previous step(ab-intio gene predictions keep_preds was set to
>1, see Scaffold1_input.gff). I have also attached the output file
>Scaffold1_out.gff.
>Please advice.
>
>Thanks and regards,
>Parul Kudtarkar
>
>> You should always get all predictions, but should only get models
>> (match/match_part) with AED scores less than 0.5.  You should never get
>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>> keep_preds set.
>>
>> Do you have keeps_preds set or gene models with AED values above your
>> threshold (not match/match_part features)?  If the first one is the
>>case,
>> just set it to 0.  If the second one in the case, could you send me
>> example GFF3?
>>
>> Thanks,
>> Carson
>>
>>
>>
>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>
>>>Dear Carson,
>>>
>>>Thanks once again, we have limited experimental data with very short
>>> ESTs.
>>>CEGMA is useful for us to gauge our gene-model.
>>>On a different note to re-annotate genome(post evidence based
>>>prediction(used as training dataset)and abinitio gene-prediction). Here
>>>are the control parameters I am using with AED score set to 0.5, however
>>> I
>>>get predictions that includes the ones with AED score of 1.00 in
>>> resulting
>>>gff3 file. Though I do see the number of genes reduced to 1/3 of initial
>>>gff3 file.
>>>
>>>#-----Genome (Required for De-Novo Annotation)
>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>> eukaryotic
>>>
>>>#-----Re-annotation Using MAKER Derived GFF3
>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
>>>est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
>>>no
>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
>>>other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 = no
>>>
>>>#-----MAKER Behavior Options
>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by 0
>>>and 1)
>>>
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>
>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>partial
>>>>at
>>>> best.  You should seriously consider using mRNAseq to capture those by
>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>trinity.
>>>>  Also I wouldn't even try to annotate contigs less than 10kb in size,
>>>>just
>>>> have maker skip them by setting the min_contig filter in the
>>>> maker_opts.ctl file.
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>
>>>>
>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>
>>>>>Thanks for the guidance Carson, total contig size is 330,611 with N50
>>>>> of
>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>> when
>>>>>filtering based on AED score 0.75 there are no gene models predicted
>>>>>despite the model_gff file has few genes with scores less than 0.75?
>>>>>
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>
>>>>>> There are certain characteristics that are apparent in this contig.
>>>>>First
>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>have
>>>>>very short ESTs, and because of the lengths you are probably getting
>>>>>many
>>>>>> of them to align spuriously which produces very short gene models
>>>>>> that
>>>>>are
>>>>>> more than likely false positives or at the very least just a piece
>>>>>>of
>>>>>>a
>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>> unless
>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your protein
>>>>>alignments also seem to be few and far between.  You probably need to
>>>>>add
>>>>>> more proteins from a couple of related species, and you might
>>>>>> consider
>>>>>using protein2genome rather than est2genome as a predictor if you are
>>>>>still working to generate a training set. Also est2genome produced
>>>>>models
>>>>>> almost always have an AED score near 0 so mixing est2genome with the
>>>>>AED_threshold with such limited protein support does create an
>>>>>artificial
>>>>>> bias to get back very short and incomplete models.
>>>>>>
>>>>>> How many contigs do you have in total and what is the N50 value for
>>>>>>the
>>>>>assembly? If you have a large number of very short contigs, you will
>>>>> get
>>>>>very inflated gene counts because you get genes split across contigs
>>>>> and
>>>>>many contigs tend t be subtle rearrangements of other contigs just
>>>>>assembled in a slightly different way (so you can get bits and pieces
>>>>> of
>>>>>the same genes just rearranged).  This scenario is another confounding
>>>>>factor if using the est2genome predictor with short ESTs.  I would
>>>>>recommend running CEGMA to get an estimate for the genome completeness
>>>>>as
>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>produced
>>>>>> is a percent of genes that are found complete (end to end) vs those
>>>>>> that
>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
>>>>>shorter
>>>>>> and less intron rich than other genes in the genome, so if CEGMA
>>>>>> gives
>>>>>> a
>>>>>high partial percentage and a low complete percentage, then this
>>>>> pattern
>>>>>can be expected to be even more exaggerated for other genes in the
>>>>>genome.
>>>>>>
>>>>>> If your genome is highly fragmented or proteins do not align well
>>>>>> then
>>>>>there are other strategies.  For example, some vertebrate genomes end
>>>>> up
>>>>>having extremely fragmented assemblies (on the order of 100,000
>>>>>contigs),
>>>>>> and if they are distantly related to other annotated species few
>>>>>proteins
>>>>>> may align to the contigs because the introns in the alignments tend
>>>>>> to
>>>>>be
>>>>>> so long and exons so short that it pushes down the significance
>>>>>> scores
>>>>>too
>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not only
>>>>>> way
>>>>>to get enough evidence to stitch gene models together.
>>>>>>
>>>>>> Thanks,
>>>>>> Carson
>>>>>>
>>>>>>
>>>>>>
>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>
>>>>>>>Dear Carson and Daniel,
>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
>>>>>>>The
>>>>>input gff3 file was provided to option model_pred(see attached file
>>>>>Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>> least
>>>>>>> 5
>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>> predicted
>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>attached
>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>Thanks and regards,
>>>>>>>Parul Kudtarkar
>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>just
>>>>>>>>want
>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>maker.
>>>>>>>>On
>>>>>>>> the other hand, if you are trying to build a dataset for training
>>>>>>>> gene
>>>>>predictors, use the maker2zff script for generating a filtered dataset
>>>>>>>>for
>>>>>>>> SNAP training.  There are a number of filters available. Just call
>>>>>>>> the
>>>>>script once without parameters to see the options.
>>>>>>>> Thanks,
>>>>>>>> Carson
>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>wrote:
>>>>>>>>>Hi Parul,
>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
>>>>>>>>>how
>>>>>you
>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>Daniel
>>>>>>>>>Daniel Ence
>>>>>>>>>Graduate Student
>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>University of Utah
>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>________________________________________
>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
>>>>>[parulk at caltech.edu]
>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>Also, are there any other parameters that are required when
>>>>>>>>>filtering
>>>>>based on AED score?
>>>>>>>>>> Hello Carson,
>>>>>>>>>> Just to confirm, Is there a script that would filter gene models
>>>>>>>>>>at
>>>>>specific AED score.
>>>>>>>>>> Alternatively if I were to do this within maker with regards to
>>>>>>>>>>parameters
>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>genes
>>>>>>>>>>gff3
>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and 1
>>>>>>>>>>> is
>>>>>worst
>>>>>>>>>>> as
>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
>>>>>>>>>>> parameter
>>>>>to
>>>>>>>>>>> require better matching to the evidence by setting it closer to
>>>>>>>>>>>0.
>>>>>>>>>>>You
>>>>>>>>>>> can
>>>>>>>>>>> also try to increase protein homology evidence as some of your
>>>>>calls
>>>>>>>>>>>may
>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>> --Carson
>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>wrote:
>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>For gene-prediction I get training data-set from evidence based
>>>>>prediction, I use this data-set to train SNAP as well as Augustus
>>>>>predictions, followed by boot-strapping. I would typically expect
>>>>>20-30K
>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>> indicating
>>>>>>>>>>>> too
>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>predication/script to retain predictions with AED score 1 and if
>>>>>yes
>>>>>>>>>>>>how
>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>--
>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-l
>>>>>>>>>>>>ab
>>>>>>>>>>>>.o
>>>>>rg
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>>>_______________________________________________
>>>>>>>>>maker-devel mailing list
>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>>>>>>>>>b.
>>>>>>>>>or
>>>>>>>>>g
>>>>>_______________________________________________
>>>>>>>>>maker-devel mailing list
>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>>>>>>>>>b.
>>>>>>>>>or
>>>>>>>>>g
>>>>>>>> _______________________________________________
>>>>>>>> maker-devel mailing list
>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>
>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>>>>>>>>.o
>>>>>>>>rg
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>>>
>>
>>
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org





From parulk at caltech.edu  Wed Dec  5 13:03:46 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Wed, 5 Dec 2012 12:03:46 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCE4D52D.169DA%carsonhh@gmail.com>
References: <CCE4D52D.169DA%carsonhh@gmail.com>
Message-ID: <1853.131.215.15.234.1354737826.squirrel@webmail.caltech.edu>

Dear Carson,

Thanks for a quick response. keep_preds is set to 0
Though for previous step(ab-intio gene predictions keep_preds was set to
1, see Scaffold1_input.gff). I have also attached the output file
Scaffold1_out.gff.
Please advice.

Thanks and regards,
Parul Kudtarkar

> You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>
> Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the case,
> just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>
> Thanks,
> Carson
>
>
>
> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>
>>Dear Carson,
>>
>>Thanks once again, we have limited experimental data with very short
>> ESTs.
>>CEGMA is useful for us to gauge our gene-model.
>>On a different note to re-annotate genome(post evidence based
>>prediction(used as training dataset)and abinitio gene-prediction). Here
>>are the control parameters I am using with AED score set to 0.5, however
>> I
>>get predictions that includes the ones with AED score of 1.00 in
>> resulting
>>gff3 file. Though I do see the number of genes reduced to 1/3 of initial
>>gff3 file.
>>
>>#-----Genome (Required for De-Novo Annotation)
>>genome=Scaffold1.fa #genome sequence file in fasta format
>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>> eukaryotic
>>
>>#-----Re-annotation Using MAKER Derived GFF3
>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
>>est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 = no
>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
>>other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 = no
>>
>>#-----MAKER Behavior Options
>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by 0
>>and 1)
>>
>>Thanks and regards,
>>Parul Kudtarkar
>>
>>> Wow 330,000 is a lot. a large portion of genes are likely to be partial
>>>at
>>> best.  You should seriously consider using mRNAseq to capture those by
>>> using maker's est_gff option to pass in results from cufflinks or
>>>trinity.
>>>  Also I wouldn't even try to annotate contigs less than 10kb in size,
>>>just
>>> have maker skip them by setting the min_contig filter in the
>>> maker_opts.ctl file.
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>
>>>
>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>
>>>>Thanks for the guidance Carson, total contig size is 330,611 with N50
>>>> of
>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>> when
>>>>filtering based on AED score 0.75 there are no gene models predicted
>>>>despite the model_gff file has few genes with scores less than 0.75?
>>>>
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>
>>>>> There are certain characteristics that are apparent in this contig.
>>>>First
>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>have
>>>>very short ESTs, and because of the lengths you are probably getting
>>>>many
>>>>> of them to align spuriously which produces very short gene models
>>>>> that
>>>>are
>>>>> more than likely false positives or at the very least just a piece of
>>>>>a
>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>> unless
>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your protein
>>>>alignments also seem to be few and far between.  You probably need to
>>>>add
>>>>> more proteins from a couple of related species, and you might
>>>>> consider
>>>>using protein2genome rather than est2genome as a predictor if you are
>>>>still working to generate a training set. Also est2genome produced
>>>>models
>>>>> almost always have an AED score near 0 so mixing est2genome with the
>>>>AED_threshold with such limited protein support does create an
>>>>artificial
>>>>> bias to get back very short and incomplete models.
>>>>>
>>>>> How many contigs do you have in total and what is the N50 value for
>>>>>the
>>>>assembly? If you have a large number of very short contigs, you will
>>>> get
>>>>very inflated gene counts because you get genes split across contigs
>>>> and
>>>>many contigs tend t be subtle rearrangements of other contigs just
>>>>assembled in a slightly different way (so you can get bits and pieces
>>>> of
>>>>the same genes just rearranged).  This scenario is another confounding
>>>>factor if using the est2genome predictor with short ESTs.  I would
>>>>recommend running CEGMA to get an estimate for the genome completeness
>>>>as
>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>produced
>>>>> is a percent of genes that are found complete (end to end) vs those
>>>>> that
>>>>are partial.  CEGMA identifies house keeping genes that tend to be
>>>>shorter
>>>>> and less intron rich than other genes in the genome, so if CEGMA
>>>>> gives
>>>>> a
>>>>high partial percentage and a low complete percentage, then this
>>>> pattern
>>>>can be expected to be even more exaggerated for other genes in the
>>>>genome.
>>>>>
>>>>> If your genome is highly fragmented or proteins do not align well
>>>>> then
>>>>there are other strategies.  For example, some vertebrate genomes end
>>>> up
>>>>having extremely fragmented assemblies (on the order of 100,000
>>>>contigs),
>>>>> and if they are distantly related to other annotated species few
>>>>proteins
>>>>> may align to the contigs because the introns in the alignments tend
>>>>> to
>>>>be
>>>>> so long and exons so short that it pushes down the significance
>>>>> scores
>>>>too
>>>>> much.  In those cases heavy mRNAseq seems to be the best if not only
>>>>> way
>>>>to get enough evidence to stitch gene models together.
>>>>>
>>>>> Thanks,
>>>>> Carson
>>>>>
>>>>>
>>>>>
>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>
>>>>>>Dear Carson and Daniel,
>>>>>>Thanks. I ran sample file for filtering genes based on AED score. The
>>>>input gff3 file was provided to option model_pred(see attached file
>>>>Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>> least
>>>>>> 5
>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>> predicted
>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>attached
>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>Thanks and regards,
>>>>>>Parul Kudtarkar
>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you just
>>>>>>>want
>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>maker.
>>>>>>>On
>>>>>>> the other hand, if you are trying to build a dataset for training
>>>>>>> gene
>>>>predictors, use the maker2zff script for generating a filtered dataset
>>>>>>>for
>>>>>>> SNAP training.  There are a number of filters available. Just call
>>>>>>> the
>>>>script once without parameters to see the options.
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>>>Hi Parul,
>>>>>>>>I think the way you described (with the maker_opts.ctl file) is how
>>>>you
>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>Daniel
>>>>>>>>Daniel Ence
>>>>>>>>Graduate Student
>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>University of Utah
>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>________________________________________
>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
>>>>[parulk at caltech.edu]
>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>To: Parul Kudtarkar
>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>Also, are there any other parameters that are required when
>>>>>>>>filtering
>>>>based on AED score?
>>>>>>>>> Hello Carson,
>>>>>>>>> Just to confirm, Is there a script that would filter gene models
>>>>>>>>>at
>>>>specific AED score.
>>>>>>>>> Alternatively if I were to do this within maker with regards to
>>>>>>>>>parameters
>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted genes
>>>>>>>>>gff3
>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and 1
>>>>>>>>>> is
>>>>worst
>>>>>>>>>> as
>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
>>>>>>>>>> parameter
>>>>to
>>>>>>>>>> require better matching to the evidence by setting it closer to
>>>>>>>>>>0.
>>>>>>>>>>You
>>>>>>>>>> can
>>>>>>>>>> also try to increase protein homology evidence as some of your
>>>>calls
>>>>>>>>>>may
>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>> --Carson
>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>wrote:
>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>For gene-prediction I get training data-set from evidence based
>>>>prediction, I use this data-set to train SNAP as well as Augustus
>>>>predictions, followed by boot-strapping. I would typically expect
>>>>20-30K
>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>> indicating
>>>>>>>>>>> too
>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>predication/script to retain predictions with AED score 1 and if
>>>>yes
>>>>>>>>>>>how
>>>>>>>>>>>to go about this?
>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>--
>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>>ab
>>>>>>>>>>>.o
>>>>rg
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>>--
>>>>>>>>Scientific Programmer
>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>Beckman Institute,
>>>>>>>>California Institute of Technology
>>>>>>>>http://www.spbase.org
>>>>>>>>_______________________________________________
>>>>>>>>maker-devel mailing list
>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.
>>>>>>>>or
>>>>>>>>g
>>>>_______________________________________________
>>>>>>>>maker-devel mailing list
>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.
>>>>>>>>or
>>>>>>>>g
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>
>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.o
>>>>>>>rg
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>>
>>
>>
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org
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From dence at genetics.utah.edu  Thu Dec  6 12:17:57 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Thu, 6 Dec 2012 19:17:57 +0000
Subject: [maker-devel] AED score
In-Reply-To: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
References: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>

Hi Parul, 

In step one, if protein2genome isn't turned on, then the protein alignments wont be used to generate gene models. Carson said before to use protein2genome to generate gene models for your trainings set, but you should know that those data aren't being used right now. 

In step 2, you can include the est and protein evidence that you used in step one, and the ab-initio predictors will takes those data as hints to guide their predictions. Also, are you reannotating human here? I'm just wondering why the snap file is called Pult, but the augustus species model is human. Also, I think you should include the same masking files from step 1, otherwise the ab-initio predictors will be predicting on the unmasked sequence which will give you many spurious predictions. 

In step 3, I'm not certain what you mean by boot-strapping. The control file you sent for step 3 will just pass-through all of the data from before. 

In step 4, I think what you'll get is pretty close to what you already had in step 3. The gene models from step 3 are already based on the est and protein data from step 1, so without giving any different evidence or ab-initio predictors, I think that you will just get the same gene models that you got from step 3. Those gene models are what you should be using to train snap. Also, is this the same genome as in the other steps? The genome file here is called genome.linear.fa, but before it was called genome.fa.

Step 5. So maker uses both evidence and ab-initio predictions to create models. If you don't give any evidence (EST or protein) maker will not annotate any gene models. You have also changed the augustus species model in this step, but I don't know what you've gained by going from one species to another. You should be training augustus with the gene models and then creating a new species model in augustus. As I understand it, the filter only operates on gene models, not ab-initio predictions or alignments, so it probably isn't doing anything the way you have it set. 

Step 6. I think step 5 and 6 should be combined. I don't know what you mean by boot-strapping here too. 

Hopefully that clears up some of the confusion with how maker works. Carson will probably have a lot of suggestions too. 

Thanks,
Daniel 

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________________
From: Parul Kudtarkar [parulk at caltech.edu]
Sent: Thursday, December 06, 2012 10:08 AM
To: carsonhh at gmail.com
Cc: Daniel Ence; maker-devel at yandell-lab.org
Subject: Re: [maker-devel] AED score

Hi Carson,

Once again thanks for a quick response. We expect to get 25,000 to 30,000
genes.
Here are the step
Step1. EST and proteins are used to predict gene-models. the resulting
file is used as training data-set for SNAP in step2. est2genome is turned
ON
Step2. Augustus and SNAP is used to predict genes.
Step3. The results are re-annoated(boot-strap)
Step4. EST and proteins are used to predict gene-models. The gff file from
step3. is used as model_gff. The resulting file is used as training
data-set for SNAP in step2
Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
contig_size to 10kb

Thanks and regards,
Parul Kudtarkar

I have attached the configuration file for each step.
> Your output has no genes.  They've all been filtered out.  The gene
predictions are left for reference purposes, but there are no gene models
> in the file.  You need to look at the type columns in the GFF3 file -->
match/match_part features are evidence and reference data but not
models.
> All models will have types gene/mRNA/exon/CDS.  For example if you just
want gene models in your file you can use the gff3_merge script with the
-g option, and it will only print out the gene models.
> I think you may be misinterpreting what is happening at different steps,
as well as how to read the result files.  Could you give me a detailed
explanation of what you expect to get back together with your control
files and I can walk you through the configuration, and indicate what to
expect.  Also what was the report like from CEGMA. Could you include the
report file that shows how complete your genome is and how fragmented it
is?
> Thanks,
> Carson
> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>Dear Carson,
>>Thanks for a quick response. keep_preds is set to 0
>>Though for previous step(ab-intio gene predictions keep_preds was set to
1, see Scaffold1_input.gff). I have also attached the output file
Scaffold1_out.gff.
>>Please advice.
>>Thanks and regards,
>>Parul Kudtarkar
>>> You should always get all predictions, but should only get models
(match/match_part) with AED scores less than 0.5.  You should never get
>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
keep_preds set.
>>> Do you have keeps_preds set or gene models with AED values above your
threshold (not match/match_part features)?  If the first one is the
>>>case,
>>> just set it to 0.  If the second one in the case, could you send me
example GFF3?
>>> Thanks,
>>> Carson
>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>Dear Carson,
>>>>Thanks once again, we have limited experimental data with very short
>>>> ESTs.
>>>>CEGMA is useful for us to gauge our gene-model.
>>>>On a different note to re-annotate genome(post evidence based
>>>>prediction(used as training dataset)and abinitio gene-prediction).
Here
>>>>are the control parameters I am using with AED score set to 0.5,
>>>> however
>>>> I
>>>>get predictions that includes the ones with AED score of 1.00 in
>>>> resulting
>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>> initial
>>>>gff3 file.
>>>>#-----Genome (Required for De-Novo Annotation)
>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>> eukaryotic
>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
no
>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>> no
>>>>#-----MAKER Behavior Options
>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
0
>>>>and 1)
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>partial
>>>>>at
>>>>> best.  You should seriously consider using mRNAseq to capture those
by
>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>trinity.
>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
size,
>>>>>just
>>>>> have maker skip them by setting the min_contig filter in the
maker_opts.ctl file.
>>>>> Thanks,
>>>>> Carson
>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
N50
>>>>>> of
>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>> when
>>>>>>filtering based on AED score 0.75 there are no gene models predicted
despite the model_gff file has few genes with scores less than 0.75?
Thanks and regards,
>>>>>>Parul Kudtarkar
>>>>>>> There are certain characteristics that are apparent in this
contig.
>>>>>>First
>>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>>have
>>>>>>very short ESTs, and because of the lengths you are probably getting
many
>>>>>>> of them to align spuriously which produces very short gene models
that
>>>>>>are
>>>>>>> more than likely false positives or at the very least just a piece
>>>>>>>of
>>>>>>>a
>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>> unless
>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>> protein
>>>>>>alignments also seem to be few and far between.  You probably need
to
>>>>>>add
>>>>>>> more proteins from a couple of related species, and you might
consider
>>>>>>using protein2genome rather than est2genome as a predictor if you
are
>>>>>>still working to generate a training set. Also est2genome produced
models
>>>>>>> almost always have an AED score near 0 so mixing est2genome with
the
>>>>>>AED_threshold with such limited protein support does create an
artificial
>>>>>>> bias to get back very short and incomplete models.
>>>>>>> How many contigs do you have in total and what is the N50 value
for
>>>>>>>the
>>>>>>assembly? If you have a large number of very short contigs, you will
>>>>>> get
>>>>>>very inflated gene counts because you get genes split across contigs
>>>>>> and
>>>>>>many contigs tend t be subtle rearrangements of other contigs just
assembled in a slightly different way (so you can get bits and
pieces
>>>>>> of
>>>>>>the same genes just rearranged).  This scenario is another
>>>>>> confounding
>>>>>>factor if using the est2genome predictor with short ESTs.  I would
recommend running CEGMA to get an estimate for the genome
>>>>>> completeness
>>>>>>as
>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>produced
>>>>>>> is a percent of genes that are found complete (end to end) vs
those
>>>>>>> that
>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
shorter
>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
gives
>>>>>>> a
>>>>>>high partial percentage and a low complete percentage, then this
>>>>>> pattern
>>>>>>can be expected to be even more exaggerated for other genes in the
genome.
>>>>>>> If your genome is highly fragmented or proteins do not align well
then
>>>>>>there are other strategies.  For example, some vertebrate genomes
end
>>>>>> up
>>>>>>having extremely fragmented assemblies (on the order of 100,000
contigs),
>>>>>>> and if they are distantly related to other annotated species few
>>>>>>proteins
>>>>>>> may align to the contigs because the introns in the alignments
tend
>>>>>>> to
>>>>>>be
>>>>>>> so long and exons so short that it pushes down the significance
scores
>>>>>>too
>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
only
>>>>>>> way
>>>>>>to get enough evidence to stitch gene models together.
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>Dear Carson and Daniel,
>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
The
>>>>>>input gff3 file was provided to option model_pred(see attached file
Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>> least
>>>>>>>> 5
>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>> predicted
>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>attached
>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>Thanks and regards,
>>>>>>>>Parul Kudtarkar
>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>just
>>>>>>>>>want
>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>maker.
>>>>>>>>>On
>>>>>>>>> the other hand, if you are trying to build a dataset for
training
>>>>>>>>> gene
>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>> dataset
>>>>>>>>>for
>>>>>>>>> SNAP training.  There are a number of filters available. Just
call
>>>>>>>>> the
>>>>>>script once without parameters to see the options.
>>>>>>>>> Thanks,
>>>>>>>>> Carson
>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>wrote:
>>>>>>>>>>Hi Parul,
>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
how
>>>>>>you
>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>Daniel
>>>>>>>>>>Daniel Ence
>>>>>>>>>>Graduate Student
>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>University of Utah
>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>________________________________________
>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>> Kudtarkar
>>>>>>[parulk at caltech.edu]
>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>Also, are there any other parameters that are required when
filtering
>>>>>>based on AED score?
>>>>>>>>>>> Hello Carson,
>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
models
>>>>>>>>>>>at
>>>>>>specific AED score.
>>>>>>>>>>> Alternatively if I were to do this within maker with regards
to
>>>>>>>>>>>parameters
>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>genes
>>>>>>>>>>>gff3
>>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>>Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
1
>>>>>>>>>>>> is
>>>>>>worst
>>>>>>>>>>>> as
>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
parameter
>>>>>>to
>>>>>>>>>>>> require better matching to the evidence by setting it closer
to
>>>>>>>>>>>>0.
>>>>>>>>>>>>You
>>>>>>>>>>>> can
>>>>>>>>>>>> also try to increase protein homology evidence as some of
your
>>>>>>calls
>>>>>>>>>>>>may
>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>> --Carson
>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>> based
>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
predictions, followed by boot-strapping. I would typically expect
20-30K
>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>> indicating
>>>>>>>>>>>>> too
>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>predication/script to retain predictions with AED score 1 and if yes
>>>>>>>>>>>>>how
>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>--
>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
-l
>>>>>>>>>>>>>ab
>>>>>>>>>>>>>.o
>>>>>>rg
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>--
>>>>>>>>>>Scientific Programmer
>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>Beckman Institute,
>>>>>>>>>>California Institute of Technology
>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
b.
>>>>>>>>>>or
>>>>>>>>>>g
>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
b.
>>>>>>>>>>or
>>>>>>>>>>g
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
.o
>>>>>>>>>rg
>>>>>>>>--
>>>>>>>>Scientific Programmer
>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>Beckman Institute,
>>>>>>>>California Institute of Technology
>>>>>>>>http://www.spbase.org
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org

--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org





From parulk at caltech.edu  Thu Dec  6 13:28:18 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Thu, 6 Dec 2012 12:28:18 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>
References: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>
Message-ID: <2337.131.215.15.234.1354825698.squirrel@webmail.caltech.edu>

Dear Daniel,

Thanks for clearing doubts. For augustus I am using the closest
species(lamprey) to species we are annotating. For SNAP the training
set(hmm file) is generated using predictions made from evidence based
gene-predictions(sorry the file name was mis-leading). I think STEP 3-6
are not required(more or less repetitive without further improving
genemodel). Post Step 1(generating training data for SNAP using evidence
based prediction) and Step2(ab-initio gene-prediction using SNAP and
augustus) do you have recommendations for further improving the gene
model?

Thanks and regards,
Parul Kudtarkar

> Hi Parul,
>
> In step one, if protein2genome isn't turned on, then the protein
> alignments wont be used to generate gene models. Carson said before to use
> protein2genome to generate gene models for your trainings set, but you
> should know that those data aren't being used right now.
>
> In step 2, you can include the est and protein evidence that you used in
> step one, and the ab-initio predictors will takes those data as hints to
> guide their predictions. Also, are you reannotating human here? I'm just
> wondering why the snap file is called Pult, but the augustus species model
> is human. Also, I think you should include the same masking files from
> step 1, otherwise the ab-initio predictors will be predicting on the
> unmasked sequence which will give you many spurious predictions.
>
> In step 3, I'm not certain what you mean by boot-strapping. The control
> file you sent for step 3 will just pass-through all of the data from
> before.
>
> In step 4, I think what you'll get is pretty close to what you already had
> in step 3. The gene models from step 3 are already based on the est and
> protein data from step 1, so without giving any different evidence or
> ab-initio predictors, I think that you will just get the same gene models
> that you got from step 3. Those gene models are what you should be using
> to train snap. Also, is this the same genome as in the other steps? The
> genome file here is called genome.linear.fa, but before it was called
> genome.fa.
>
> Step 5. So maker uses both evidence and ab-initio predictions to create
> models. If you don't give any evidence (EST or protein) maker will not
> annotate any gene models. You have also changed the augustus species model
> in this step, but I don't know what you've gained by going from one
> species to another. You should be training augustus with the gene models
> and then creating a new species model in augustus. As I understand it, the
> filter only operates on gene models, not ab-initio predictions or
> alignments, so it probably isn't doing anything the way you have it set.
>
> Step 6. I think step 5 and 6 should be combined. I don't know what you
> mean by boot-strapping here too.
>
> Hopefully that clears up some of the confusion with how maker works.
> Carson will probably have a lot of suggestions too.
>
> Thanks,
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 10:08 AM
> To: carsonhh at gmail.com
> Cc: Daniel Ence; maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
>
> Hi Carson,
>
> Once again thanks for a quick response. We expect to get 25,000 to 30,000
> genes.
> Here are the step
> Step1. EST and proteins are used to predict gene-models. the resulting
> file is used as training data-set for SNAP in step2. est2genome is turned
> ON
> Step2. Augustus and SNAP is used to predict genes.
> Step3. The results are re-annoated(boot-strap)
> Step4. EST and proteins are used to predict gene-models. The gff file from
> step3. is used as model_gff. The resulting file is used as training
> data-set for SNAP in step2
> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
> contig_size to 10kb
>
> Thanks and regards,
> Parul Kudtarkar
>
> I have attached the configuration file for each step.
>> Your output has no genes.  They've all been filtered out.  The gene
> predictions are left for reference purposes, but there are no gene models
>> in the file.  You need to look at the type columns in the GFF3 file -->
> match/match_part features are evidence and reference data but not
> models.
>> All models will have types gene/mRNA/exon/CDS.  For example if you just
> want gene models in your file you can use the gff3_merge script with the
> -g option, and it will only print out the gene models.
>> I think you may be misinterpreting what is happening at different steps,
> as well as how to read the result files.  Could you give me a detailed
> explanation of what you expect to get back together with your control
> files and I can walk you through the configuration, and indicate what to
> expect.  Also what was the report like from CEGMA. Could you include the
> report file that shows how complete your genome is and how fragmented it
> is?
>> Thanks,
>> Carson
>> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>Dear Carson,
>>>Thanks for a quick response. keep_preds is set to 0
>>>Though for previous step(ab-intio gene predictions keep_preds was set to
> 1, see Scaffold1_input.gff). I have also attached the output file
> Scaffold1_out.gff.
>>>Please advice.
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>> You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
>>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>>>> Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the
>>>>case,
>>>> just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>>>> Thanks,
>>>> Carson
>>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>Dear Carson,
>>>>>Thanks once again, we have limited experimental data with very short
>>>>> ESTs.
>>>>>CEGMA is useful for us to gauge our gene-model.
>>>>>On a different note to re-annotate genome(post evidence based
>>>>>prediction(used as training dataset)and abinitio gene-prediction).
> Here
>>>>>are the control parameters I am using with AED score set to 0.5,
>>>>> however
>>>>> I
>>>>>get predictions that includes the ones with AED score of 1.00 in
>>>>> resulting
>>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>> initial
>>>>>gff3 file.
>>>>>#-----Genome (Required for De-Novo Annotation)
>>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>> eukaryotic
>>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
> no
>>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>> no
>>>>>#-----MAKER Behavior Options
>>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
> 0
>>>>>and 1)
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>partial
>>>>>>at
>>>>>> best.  You should seriously consider using mRNAseq to capture those
> by
>>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>>trinity.
>>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
> size,
>>>>>>just
>>>>>> have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>>>>>> Thanks,
>>>>>> Carson
>>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
> N50
>>>>>>> of
>>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>> when
>>>>>>>filtering based on AED score 0.75 there are no gene models predicted
> despite the model_gff file has few genes with scores less than 0.75?
> Thanks and regards,
>>>>>>>Parul Kudtarkar
>>>>>>>> There are certain characteristics that are apparent in this
> contig.
>>>>>>>First
>>>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>>>have
>>>>>>>very short ESTs, and because of the lengths you are probably getting
> many
>>>>>>>> of them to align spuriously which produces very short gene models
> that
>>>>>>>are
>>>>>>>> more than likely false positives or at the very least just a piece
>>>>>>>>of
>>>>>>>>a
>>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>>> unless
>>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>> protein
>>>>>>>alignments also seem to be few and far between.  You probably need
> to
>>>>>>>add
>>>>>>>> more proteins from a couple of related species, and you might
> consider
>>>>>>>using protein2genome rather than est2genome as a predictor if you
> are
>>>>>>>still working to generate a training set. Also est2genome produced
> models
>>>>>>>> almost always have an AED score near 0 so mixing est2genome with
> the
>>>>>>>AED_threshold with such limited protein support does create an
> artificial
>>>>>>>> bias to get back very short and incomplete models.
>>>>>>>> How many contigs do you have in total and what is the N50 value
> for
>>>>>>>>the
>>>>>>>assembly? If you have a large number of very short contigs, you will
>>>>>>> get
>>>>>>>very inflated gene counts because you get genes split across contigs
>>>>>>> and
>>>>>>>many contigs tend t be subtle rearrangements of other contigs just
> assembled in a slightly different way (so you can get bits and
> pieces
>>>>>>> of
>>>>>>>the same genes just rearranged).  This scenario is another
>>>>>>> confounding
>>>>>>>factor if using the est2genome predictor with short ESTs.  I would
> recommend running CEGMA to get an estimate for the genome
>>>>>>> completeness
>>>>>>>as
>>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>>produced
>>>>>>>> is a percent of genes that are found complete (end to end) vs
> those
>>>>>>>> that
>>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
> shorter
>>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
> gives
>>>>>>>> a
>>>>>>>high partial percentage and a low complete percentage, then this
>>>>>>> pattern
>>>>>>>can be expected to be even more exaggerated for other genes in the
> genome.
>>>>>>>> If your genome is highly fragmented or proteins do not align well
> then
>>>>>>>there are other strategies.  For example, some vertebrate genomes
> end
>>>>>>> up
>>>>>>>having extremely fragmented assemblies (on the order of 100,000
> contigs),
>>>>>>>> and if they are distantly related to other annotated species few
>>>>>>>proteins
>>>>>>>> may align to the contigs because the introns in the alignments
> tend
>>>>>>>> to
>>>>>>>be
>>>>>>>> so long and exons so short that it pushes down the significance
> scores
>>>>>>>too
>>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
> only
>>>>>>>> way
>>>>>>>to get enough evidence to stitch gene models together.
>>>>>>>> Thanks,
>>>>>>>> Carson
>>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>>Dear Carson and Daniel,
>>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
> The
>>>>>>>input gff3 file was provided to option model_pred(see attached file
> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>> least
>>>>>>>>> 5
>>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>>> predicted
>>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>>attached
>>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>Thanks and regards,
>>>>>>>>>Parul Kudtarkar
>>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>just
>>>>>>>>>>want
>>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>>maker.
>>>>>>>>>>On
>>>>>>>>>> the other hand, if you are trying to build a dataset for
> training
>>>>>>>>>> gene
>>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>>> dataset
>>>>>>>>>>for
>>>>>>>>>> SNAP training.  There are a number of filters available. Just
> call
>>>>>>>>>> the
>>>>>>>script once without parameters to see the options.
>>>>>>>>>> Thanks,
>>>>>>>>>> Carson
>>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>wrote:
>>>>>>>>>>>Hi Parul,
>>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
> how
>>>>>>>you
>>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>>Daniel
>>>>>>>>>>>Daniel Ence
>>>>>>>>>>>Graduate Student
>>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>>University of Utah
>>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>>________________________________________
>>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>> Kudtarkar
>>>>>>>[parulk at caltech.edu]
>>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>>Also, are there any other parameters that are required when
> filtering
>>>>>>>based on AED score?
>>>>>>>>>>>> Hello Carson,
>>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
> models
>>>>>>>>>>>>at
>>>>>>>specific AED score.
>>>>>>>>>>>> Alternatively if I were to do this within maker with regards
> to
>>>>>>>>>>>>parameters
>>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>genes
>>>>>>>>>>>>gff3
>>>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
> 1
>>>>>>>>>>>>> is
>>>>>>>worst
>>>>>>>>>>>>> as
>>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
> parameter
>>>>>>>to
>>>>>>>>>>>>> require better matching to the evidence by setting it closer
> to
>>>>>>>>>>>>>0.
>>>>>>>>>>>>>You
>>>>>>>>>>>>> can
>>>>>>>>>>>>> also try to increase protein homology evidence as some of
> your
>>>>>>>calls
>>>>>>>>>>>>>may
>>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>>> --Carson
>>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>> based
>>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
> predictions, followed by boot-strapping. I would typically expect
> 20-30K
>>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>> indicating
>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>>predication/script to retain predictions with AED score 1 and if yes
>>>>>>>>>>>>>>how
>>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>>--
>>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
> -l
>>>>>>>>>>>>>>ab
>>>>>>>>>>>>>>.o
>>>>>>>rg
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>--
>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>>>>>>or
>>>>>>>>>>>g
>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>>>>>>or
>>>>>>>>>>>g
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
> .o
>>>>>>>>>>rg
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From dence at genetics.utah.edu  Thu Dec  6 14:35:04 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Thu, 6 Dec 2012 21:35:04 +0000
Subject: [maker-devel] AED score
In-Reply-To: <2337.131.215.15.234.1354825698.squirrel@webmail.caltech.edu>
References: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>,
	<2337.131.215.15.234.1354825698.squirrel@webmail.caltech.edu>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB59B1@mxb2.hg.genetics.utah.edu>

Hi Parul, 
I dont' really have many suggestions for improving the gene models after the annotation is done. Annotation is very dependent on the data you have at hand (the assembly, ESTs and proteins). One thing you could do to get more annotations is to run something like iprscan on the ab-initio predictions that didn't overlap any evidence and look for predictions that contain a pfam domain. Then you can send those predictions back through maker and promote them to gene model status. 

Do you have the CEGMA results that Carson asked about? That really will tell you what kind of annotation results you can expect. If the assembly doesn't have an N50 greater than the expected median gene size, then you can't expect very good results from automated annotation. 

Thanks,
Daniel 

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________________
From: Parul Kudtarkar [parulk at caltech.edu]
Sent: Thursday, December 06, 2012 1:28 PM
To: Daniel Ence
Cc: maker-devel at yandell-lab.org
Subject: Re: [maker-devel] AED score

Dear Daniel,

Thanks for clearing doubts. For augustus I am using the closest
species(lamprey) to species we are annotating. For SNAP the training
set(hmm file) is generated using predictions made from evidence based
gene-predictions(sorry the file name was mis-leading). I think STEP 3-6
are not required(more or less repetitive without further improving
genemodel). Post Step 1(generating training data for SNAP using evidence
based prediction) and Step2(ab-initio gene-prediction using SNAP and
augustus) do you have recommendations for further improving the gene
model?

Thanks and regards,
Parul Kudtarkar

> Hi Parul,
>
> In step one, if protein2genome isn't turned on, then the protein
> alignments wont be used to generate gene models. Carson said before to use
> protein2genome to generate gene models for your trainings set, but you
> should know that those data aren't being used right now.
>
> In step 2, you can include the est and protein evidence that you used in
> step one, and the ab-initio predictors will takes those data as hints to
> guide their predictions. Also, are you reannotating human here? I'm just
> wondering why the snap file is called Pult, but the augustus species model
> is human. Also, I think you should include the same masking files from
> step 1, otherwise the ab-initio predictors will be predicting on the
> unmasked sequence which will give you many spurious predictions.
>
> In step 3, I'm not certain what you mean by boot-strapping. The control
> file you sent for step 3 will just pass-through all of the data from
> before.
>
> In step 4, I think what you'll get is pretty close to what you already had
> in step 3. The gene models from step 3 are already based on the est and
> protein data from step 1, so without giving any different evidence or
> ab-initio predictors, I think that you will just get the same gene models
> that you got from step 3. Those gene models are what you should be using
> to train snap. Also, is this the same genome as in the other steps? The
> genome file here is called genome.linear.fa, but before it was called
> genome.fa.
>
> Step 5. So maker uses both evidence and ab-initio predictions to create
> models. If you don't give any evidence (EST or protein) maker will not
> annotate any gene models. You have also changed the augustus species model
> in this step, but I don't know what you've gained by going from one
> species to another. You should be training augustus with the gene models
> and then creating a new species model in augustus. As I understand it, the
> filter only operates on gene models, not ab-initio predictions or
> alignments, so it probably isn't doing anything the way you have it set.
>
> Step 6. I think step 5 and 6 should be combined. I don't know what you
> mean by boot-strapping here too.
>
> Hopefully that clears up some of the confusion with how maker works.
> Carson will probably have a lot of suggestions too.
>
> Thanks,
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 10:08 AM
> To: carsonhh at gmail.com
> Cc: Daniel Ence; maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
>
> Hi Carson,
>
> Once again thanks for a quick response. We expect to get 25,000 to 30,000
> genes.
> Here are the step
> Step1. EST and proteins are used to predict gene-models. the resulting
> file is used as training data-set for SNAP in step2. est2genome is turned
> ON
> Step2. Augustus and SNAP is used to predict genes.
> Step3. The results are re-annoated(boot-strap)
> Step4. EST and proteins are used to predict gene-models. The gff file from
> step3. is used as model_gff. The resulting file is used as training
> data-set for SNAP in step2
> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
> contig_size to 10kb
>
> Thanks and regards,
> Parul Kudtarkar
>
> I have attached the configuration file for each step.
>> Your output has no genes.  They've all been filtered out.  The gene
> predictions are left for reference purposes, but there are no gene models
>> in the file.  You need to look at the type columns in the GFF3 file -->
> match/match_part features are evidence and reference data but not
> models.
>> All models will have types gene/mRNA/exon/CDS.  For example if you just
> want gene models in your file you can use the gff3_merge script with the
> -g option, and it will only print out the gene models.
>> I think you may be misinterpreting what is happening at different steps,
> as well as how to read the result files.  Could you give me a detailed
> explanation of what you expect to get back together with your control
> files and I can walk you through the configuration, and indicate what to
> expect.  Also what was the report like from CEGMA. Could you include the
> report file that shows how complete your genome is and how fragmented it
> is?
>> Thanks,
>> Carson
>> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>Dear Carson,
>>>Thanks for a quick response. keep_preds is set to 0
>>>Though for previous step(ab-intio gene predictions keep_preds was set to
> 1, see Scaffold1_input.gff). I have also attached the output file
> Scaffold1_out.gff.
>>>Please advice.
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>> You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
>>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>>>> Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the
>>>>case,
>>>> just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>>>> Thanks,
>>>> Carson
>>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>Dear Carson,
>>>>>Thanks once again, we have limited experimental data with very short
>>>>> ESTs.
>>>>>CEGMA is useful for us to gauge our gene-model.
>>>>>On a different note to re-annotate genome(post evidence based
>>>>>prediction(used as training dataset)and abinitio gene-prediction).
> Here
>>>>>are the control parameters I am using with AED score set to 0.5,
>>>>> however
>>>>> I
>>>>>get predictions that includes the ones with AED score of 1.00 in
>>>>> resulting
>>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>> initial
>>>>>gff3 file.
>>>>>#-----Genome (Required for De-Novo Annotation)
>>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>> eukaryotic
>>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
> no
>>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>> no
>>>>>#-----MAKER Behavior Options
>>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
> 0
>>>>>and 1)
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>partial
>>>>>>at
>>>>>> best.  You should seriously consider using mRNAseq to capture those
> by
>>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>>trinity.
>>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
> size,
>>>>>>just
>>>>>> have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>>>>>> Thanks,
>>>>>> Carson
>>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
> N50
>>>>>>> of
>>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>> when
>>>>>>>filtering based on AED score 0.75 there are no gene models predicted
> despite the model_gff file has few genes with scores less than 0.75?
> Thanks and regards,
>>>>>>>Parul Kudtarkar
>>>>>>>> There are certain characteristics that are apparent in this
> contig.
>>>>>>>First
>>>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>>>have
>>>>>>>very short ESTs, and because of the lengths you are probably getting
> many
>>>>>>>> of them to align spuriously which produces very short gene models
> that
>>>>>>>are
>>>>>>>> more than likely false positives or at the very least just a piece
>>>>>>>>of
>>>>>>>>a
>>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>>> unless
>>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>> protein
>>>>>>>alignments also seem to be few and far between.  You probably need
> to
>>>>>>>add
>>>>>>>> more proteins from a couple of related species, and you might
> consider
>>>>>>>using protein2genome rather than est2genome as a predictor if you
> are
>>>>>>>still working to generate a training set. Also est2genome produced
> models
>>>>>>>> almost always have an AED score near 0 so mixing est2genome with
> the
>>>>>>>AED_threshold with such limited protein support does create an
> artificial
>>>>>>>> bias to get back very short and incomplete models.
>>>>>>>> How many contigs do you have in total and what is the N50 value
> for
>>>>>>>>the
>>>>>>>assembly? If you have a large number of very short contigs, you will
>>>>>>> get
>>>>>>>very inflated gene counts because you get genes split across contigs
>>>>>>> and
>>>>>>>many contigs tend t be subtle rearrangements of other contigs just
> assembled in a slightly different way (so you can get bits and
> pieces
>>>>>>> of
>>>>>>>the same genes just rearranged).  This scenario is another
>>>>>>> confounding
>>>>>>>factor if using the est2genome predictor with short ESTs.  I would
> recommend running CEGMA to get an estimate for the genome
>>>>>>> completeness
>>>>>>>as
>>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>>produced
>>>>>>>> is a percent of genes that are found complete (end to end) vs
> those
>>>>>>>> that
>>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
> shorter
>>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
> gives
>>>>>>>> a
>>>>>>>high partial percentage and a low complete percentage, then this
>>>>>>> pattern
>>>>>>>can be expected to be even more exaggerated for other genes in the
> genome.
>>>>>>>> If your genome is highly fragmented or proteins do not align well
> then
>>>>>>>there are other strategies.  For example, some vertebrate genomes
> end
>>>>>>> up
>>>>>>>having extremely fragmented assemblies (on the order of 100,000
> contigs),
>>>>>>>> and if they are distantly related to other annotated species few
>>>>>>>proteins
>>>>>>>> may align to the contigs because the introns in the alignments
> tend
>>>>>>>> to
>>>>>>>be
>>>>>>>> so long and exons so short that it pushes down the significance
> scores
>>>>>>>too
>>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
> only
>>>>>>>> way
>>>>>>>to get enough evidence to stitch gene models together.
>>>>>>>> Thanks,
>>>>>>>> Carson
>>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>>Dear Carson and Daniel,
>>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
> The
>>>>>>>input gff3 file was provided to option model_pred(see attached file
> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>> least
>>>>>>>>> 5
>>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>>> predicted
>>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>>attached
>>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>Thanks and regards,
>>>>>>>>>Parul Kudtarkar
>>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>just
>>>>>>>>>>want
>>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>>maker.
>>>>>>>>>>On
>>>>>>>>>> the other hand, if you are trying to build a dataset for
> training
>>>>>>>>>> gene
>>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>>> dataset
>>>>>>>>>>for
>>>>>>>>>> SNAP training.  There are a number of filters available. Just
> call
>>>>>>>>>> the
>>>>>>>script once without parameters to see the options.
>>>>>>>>>> Thanks,
>>>>>>>>>> Carson
>>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>wrote:
>>>>>>>>>>>Hi Parul,
>>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
> how
>>>>>>>you
>>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>>Daniel
>>>>>>>>>>>Daniel Ence
>>>>>>>>>>>Graduate Student
>>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>>University of Utah
>>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>>________________________________________
>>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>> Kudtarkar
>>>>>>>[parulk at caltech.edu]
>>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>>Also, are there any other parameters that are required when
> filtering
>>>>>>>based on AED score?
>>>>>>>>>>>> Hello Carson,
>>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
> models
>>>>>>>>>>>>at
>>>>>>>specific AED score.
>>>>>>>>>>>> Alternatively if I were to do this within maker with regards
> to
>>>>>>>>>>>>parameters
>>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>genes
>>>>>>>>>>>>gff3
>>>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
> 1
>>>>>>>>>>>>> is
>>>>>>>worst
>>>>>>>>>>>>> as
>>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
> parameter
>>>>>>>to
>>>>>>>>>>>>> require better matching to the evidence by setting it closer
> to
>>>>>>>>>>>>>0.
>>>>>>>>>>>>>You
>>>>>>>>>>>>> can
>>>>>>>>>>>>> also try to increase protein homology evidence as some of
> your
>>>>>>>calls
>>>>>>>>>>>>>may
>>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>>> --Carson
>>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>> based
>>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
> predictions, followed by boot-strapping. I would typically expect
> 20-30K
>>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>> indicating
>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>>predication/script to retain predictions with AED score 1 and if yes
>>>>>>>>>>>>>>how
>>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>>--
>>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
> -l
>>>>>>>>>>>>>>ab
>>>>>>>>>>>>>>.o
>>>>>>>rg
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>--
>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>>>>>>or
>>>>>>>>>>>g
>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>>>>>>or
>>>>>>>>>>>g
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
> .o
>>>>>>>>>>rg
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From parulk at caltech.edu  Thu Dec  6 15:51:42 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Thu, 6 Dec 2012 14:51:42 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB59B1@mxb2.hg.genetics.utah.edu>
References: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>,
	<2337.131.215.15.234.1354825698.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB59B1@mxb2.hg.genetics.utah.edu>
Message-ID: <4347.131.215.15.234.1354834302.squirrel@webmail.caltech.edu>

Dear Daniel,

Once again thanks for extensive help. We get over estimation of number of
genes at the end of step 2. So was wondering if there is a way to pick
only the best annotated. That been said assembly, ESTs and proteins are
not good and I am currently in process of running cegma.

Also for step 2(ab-initio gene-prediction using SNAP and Augustus) is it
best to turn off  keep_preds to remove any possible false-positives. Also
should est2genome turned ON? Of course as pointed in previous email use
est,proteins apart from training data to generate better gene-model and
repeat masking as well to mask repeats for ab-initio predictors?
I believe while running gff3_merge it is best to use option -g to get only
the gene-predictions and filter evidence.

Thanks and regards,
Parul Kudtarkar

> Hi Parul,
> I dont' really have many suggestions for improving the gene models after
> the annotation is done. Annotation is very dependent on the data you have
> at hand (the assembly, ESTs and proteins). One thing you could do to get
> more annotations is to run something like iprscan on the ab-initio
> predictions that didn't overlap any evidence and look for predictions that
> contain a pfam domain. Then you can send those predictions back through
> maker and promote them to gene model status.
>
> Do you have the CEGMA results that Carson asked about? That really will
> tell you what kind of annotation results you can expect. If the assembly
> doesn't have an N50 greater than the expected median gene size, then you
> can't expect very good results from automated annotation.
>
> Thanks,
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 1:28 PM
> To: Daniel Ence
> Cc: maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
>
> Dear Daniel,
>
> Thanks for clearing doubts. For augustus I am using the closest
> species(lamprey) to species we are annotating. For SNAP the training
> set(hmm file) is generated using predictions made from evidence based
> gene-predictions(sorry the file name was mis-leading). I think STEP 3-6
> are not required(more or less repetitive without further improving
> genemodel). Post Step 1(generating training data for SNAP using evidence
> based prediction) and Step2(ab-initio gene-prediction using SNAP and
> augustus) do you have recommendations for further improving the gene
> model?
>
> Thanks and regards,
> Parul Kudtarkar
>
>> Hi Parul,
>>
>> In step one, if protein2genome isn't turned on, then the protein
>> alignments wont be used to generate gene models. Carson said before to
>> use
>> protein2genome to generate gene models for your trainings set, but you
>> should know that those data aren't being used right now.
>>
>> In step 2, you can include the est and protein evidence that you used in
>> step one, and the ab-initio predictors will takes those data as hints to
>> guide their predictions. Also, are you reannotating human here? I'm just
>> wondering why the snap file is called Pult, but the augustus species
>> model
>> is human. Also, I think you should include the same masking files from
>> step 1, otherwise the ab-initio predictors will be predicting on the
>> unmasked sequence which will give you many spurious predictions.
>>
>> In step 3, I'm not certain what you mean by boot-strapping. The control
>> file you sent for step 3 will just pass-through all of the data from
>> before.
>>
>> In step 4, I think what you'll get is pretty close to what you already
>> had
>> in step 3. The gene models from step 3 are already based on the est and
>> protein data from step 1, so without giving any different evidence or
>> ab-initio predictors, I think that you will just get the same gene
>> models
>> that you got from step 3. Those gene models are what you should be using
>> to train snap. Also, is this the same genome as in the other steps? The
>> genome file here is called genome.linear.fa, but before it was called
>> genome.fa.
>>
>> Step 5. So maker uses both evidence and ab-initio predictions to create
>> models. If you don't give any evidence (EST or protein) maker will not
>> annotate any gene models. You have also changed the augustus species
>> model
>> in this step, but I don't know what you've gained by going from one
>> species to another. You should be training augustus with the gene models
>> and then creating a new species model in augustus. As I understand it,
>> the
>> filter only operates on gene models, not ab-initio predictions or
>> alignments, so it probably isn't doing anything the way you have it set.
>>
>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>> mean by boot-strapping here too.
>>
>> Hopefully that clears up some of the confusion with how maker works.
>> Carson will probably have a lot of suggestions too.
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: Parul Kudtarkar [parulk at caltech.edu]
>> Sent: Thursday, December 06, 2012 10:08 AM
>> To: carsonhh at gmail.com
>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>> Subject: Re: [maker-devel] AED score
>>
>> Hi Carson,
>>
>> Once again thanks for a quick response. We expect to get 25,000 to
>> 30,000
>> genes.
>> Here are the step
>> Step1. EST and proteins are used to predict gene-models. the resulting
>> file is used as training data-set for SNAP in step2. est2genome is
>> turned
>> ON
>> Step2. Augustus and SNAP is used to predict genes.
>> Step3. The results are re-annoated(boot-strap)
>> Step4. EST and proteins are used to predict gene-models. The gff file
>> from
>> step3. is used as model_gff. The resulting file is used as training
>> data-set for SNAP in step2
>> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>> contig_size to 10kb
>>
>> Thanks and regards,
>> Parul Kudtarkar
>>
>> I have attached the configuration file for each step.
>>> Your output has no genes.  They've all been filtered out.  The gene
>> predictions are left for reference purposes, but there are no gene
>> models
>>> in the file.  You need to look at the type columns in the GFF3 file -->
>> match/match_part features are evidence and reference data but not
>> models.
>>> All models will have types gene/mRNA/exon/CDS.  For example if you just
>> want gene models in your file you can use the gff3_merge script with the
>> -g option, and it will only print out the gene models.
>>> I think you may be misinterpreting what is happening at different
>>> steps,
>> as well as how to read the result files.  Could you give me a detailed
>> explanation of what you expect to get back together with your control
>> files and I can walk you through the configuration, and indicate what to
>> expect.  Also what was the report like from CEGMA. Could you include the
>> report file that shows how complete your genome is and how fragmented it
>> is?
>>> Thanks,
>>> Carson
>>> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>Dear Carson,
>>>>Thanks for a quick response. keep_preds is set to 0
>>>>Though for previous step(ab-intio gene predictions keep_preds was set
>>>> to
>> 1, see Scaffold1_input.gff). I have also attached the output file
>> Scaffold1_out.gff.
>>>>Please advice.
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>> You should always get all predictions, but should only get models
>> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>> keep_preds set.
>>>>> Do you have keeps_preds set or gene models with AED values above your
>> threshold (not match/match_part features)?  If the first one is the
>>>>>case,
>>>>> just set it to 0.  If the second one in the case, could you send me
>> example GFF3?
>>>>> Thanks,
>>>>> Carson
>>>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>Dear Carson,
>>>>>>Thanks once again, we have limited experimental data with very short
>>>>>> ESTs.
>>>>>>CEGMA is useful for us to gauge our gene-model.
>>>>>>On a different note to re-annotate genome(post evidence based
>>>>>>prediction(used as training dataset)and abinitio gene-prediction).
>> Here
>>>>>>are the control parameters I am using with AED score set to 0.5,
>>>>>> however
>>>>>> I
>>>>>>get predictions that includes the ones with AED score of 1.00 in
>>>>>> resulting
>>>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>> initial
>>>>>>gff3 file.
>>>>>>#-----Genome (Required for De-Novo Annotation)
>>>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>> eukaryotic
>>>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0
>>>>>> =
>> no
>>>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>> no
>>>>>>#-----MAKER Behavior Options
>>>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
>> 0
>>>>>>and 1)
>>>>>>Thanks and regards,
>>>>>>Parul Kudtarkar
>>>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>partial
>>>>>>>at
>>>>>>> best.  You should seriously consider using mRNAseq to capture those
>> by
>>>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>>>trinity.
>>>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
>> size,
>>>>>>>just
>>>>>>> have maker skip them by setting the min_contig filter in the
>> maker_opts.ctl file.
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
>> N50
>>>>>>>> of
>>>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>>> when
>>>>>>>>filtering based on AED score 0.75 there are no gene models
>>>>>>>> predicted
>> despite the model_gff file has few genes with scores less than 0.75?
>> Thanks and regards,
>>>>>>>>Parul Kudtarkar
>>>>>>>>> There are certain characteristics that are apparent in this
>> contig.
>>>>>>>>First
>>>>>>>>> it seems to be repeat rich with a very low gene density.  You
>>>>>>>>> also
>>>>>>>>>have
>>>>>>>>very short ESTs, and because of the lengths you are probably
>>>>>>>> getting
>> many
>>>>>>>>> of them to align spuriously which produces very short gene models
>> that
>>>>>>>>are
>>>>>>>>> more than likely false positives or at the very least just a
>>>>>>>>> piece
>>>>>>>>>of
>>>>>>>>>a
>>>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>> unless
>>>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>> protein
>>>>>>>>alignments also seem to be few and far between.  You probably need
>> to
>>>>>>>>add
>>>>>>>>> more proteins from a couple of related species, and you might
>> consider
>>>>>>>>using protein2genome rather than est2genome as a predictor if you
>> are
>>>>>>>>still working to generate a training set. Also est2genome produced
>> models
>>>>>>>>> almost always have an AED score near 0 so mixing est2genome with
>> the
>>>>>>>>AED_threshold with such limited protein support does create an
>> artificial
>>>>>>>>> bias to get back very short and incomplete models.
>>>>>>>>> How many contigs do you have in total and what is the N50 value
>> for
>>>>>>>>>the
>>>>>>>>assembly? If you have a large number of very short contigs, you
>>>>>>>> will
>>>>>>>> get
>>>>>>>>very inflated gene counts because you get genes split across
>>>>>>>> contigs
>>>>>>>> and
>>>>>>>>many contigs tend t be subtle rearrangements of other contigs just
>> assembled in a slightly different way (so you can get bits and
>> pieces
>>>>>>>> of
>>>>>>>>the same genes just rearranged).  This scenario is another
>>>>>>>> confounding
>>>>>>>>factor if using the est2genome predictor with short ESTs.  I would
>> recommend running CEGMA to get an estimate for the genome
>>>>>>>> completeness
>>>>>>>>as
>>>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>>>produced
>>>>>>>>> is a percent of genes that are found complete (end to end) vs
>> those
>>>>>>>>> that
>>>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
>> shorter
>>>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
>> gives
>>>>>>>>> a
>>>>>>>>high partial percentage and a low complete percentage, then this
>>>>>>>> pattern
>>>>>>>>can be expected to be even more exaggerated for other genes in the
>> genome.
>>>>>>>>> If your genome is highly fragmented or proteins do not align well
>> then
>>>>>>>>there are other strategies.  For example, some vertebrate genomes
>> end
>>>>>>>> up
>>>>>>>>having extremely fragmented assemblies (on the order of 100,000
>> contigs),
>>>>>>>>> and if they are distantly related to other annotated species few
>>>>>>>>proteins
>>>>>>>>> may align to the contigs because the introns in the alignments
>> tend
>>>>>>>>> to
>>>>>>>>be
>>>>>>>>> so long and exons so short that it pushes down the significance
>> scores
>>>>>>>>too
>>>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
>> only
>>>>>>>>> way
>>>>>>>>to get enough evidence to stitch gene models together.
>>>>>>>>> Thanks,
>>>>>>>>> Carson
>>>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>>>Dear Carson and Daniel,
>>>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
>> The
>>>>>>>>input gff3 file was provided to option model_pred(see attached file
>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>> least
>>>>>>>>>> 5
>>>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>>>> predicted
>>>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>>>attached
>>>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>Thanks and regards,
>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>>just
>>>>>>>>>>>want
>>>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>>>maker.
>>>>>>>>>>>On
>>>>>>>>>>> the other hand, if you are trying to build a dataset for
>> training
>>>>>>>>>>> gene
>>>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>>>> dataset
>>>>>>>>>>>for
>>>>>>>>>>> SNAP training.  There are a number of filters available. Just
>> call
>>>>>>>>>>> the
>>>>>>>>script once without parameters to see the options.
>>>>>>>>>>> Thanks,
>>>>>>>>>>> Carson
>>>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>>wrote:
>>>>>>>>>>>>Hi Parul,
>>>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
>> how
>>>>>>>>you
>>>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>>>Daniel
>>>>>>>>>>>>Daniel Ence
>>>>>>>>>>>>Graduate Student
>>>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>>>University of Utah
>>>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>>>________________________________________
>>>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>> Kudtarkar
>>>>>>>>[parulk at caltech.edu]
>>>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>>>Also, are there any other parameters that are required when
>> filtering
>>>>>>>>based on AED score?
>>>>>>>>>>>>> Hello Carson,
>>>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
>> models
>>>>>>>>>>>>>at
>>>>>>>>specific AED score.
>>>>>>>>>>>>> Alternatively if I were to do this within maker with regards
>> to
>>>>>>>>>>>>>parameters
>>>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>>genes
>>>>>>>>>>>>>gff3
>>>>>>>>>>>>> file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>> threshold?
>>>>>>>>Thanks and regards,
>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
>> 1
>>>>>>>>>>>>>> is
>>>>>>>>worst
>>>>>>>>>>>>>> as
>>>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
>> parameter
>>>>>>>>to
>>>>>>>>>>>>>> require better matching to the evidence by setting it closer
>> to
>>>>>>>>>>>>>>0.
>>>>>>>>>>>>>>You
>>>>>>>>>>>>>> can
>>>>>>>>>>>>>> also try to increase protein homology evidence as some of
>> your
>>>>>>>>calls
>>>>>>>>>>>>>>may
>>>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>>>> --Carson
>>>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>>> based
>>>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
>> predictions, followed by boot-strapping. I would typically expect
>> 20-30K
>>>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>>> indicating
>>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>>>predication/script to retain predictions with AED score 1 and if
>>>>>>>> yes
>>>>>>>>>>>>>>>how
>>>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>>>--
>>>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>> -l
>>>>>>>>>>>>>>>ab
>>>>>>>>>>>>>>>.o
>>>>>>>>rg
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>--
>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>> b.
>>>>>>>>>>>>or
>>>>>>>>>>>>g
>>>>>>>>_______________________________________________
>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>> b.
>>>>>>>>>>>>or
>>>>>>>>>>>>g
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>> .o
>>>>>>>>>>>rg
>>>>>>>>>>--
>>>>>>>>>>Scientific Programmer
>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>Beckman Institute,
>>>>>>>>>>California Institute of Technology
>>>>>>>>>>http://www.spbase.org
>>>>>>>>--
>>>>>>>>Scientific Programmer
>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>Beckman Institute,
>>>>>>>>California Institute of Technology
>>>>>>>>http://www.spbase.org
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>>
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From parulk at caltech.edu  Thu Dec  6 10:08:23 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Thu, 6 Dec 2012 09:08:23 -0800 (PST)
Subject: [maker-devel] AED score
Message-ID: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>

Hi Carson,

Once again thanks for a quick response. We expect to get 25,000 to 30,000
genes.
Here are the step
Step1. EST and proteins are used to predict gene-models. the resulting
file is used as training data-set for SNAP in step2. est2genome is turned
ON
Step2. Augustus and SNAP is used to predict genes.
Step3. The results are re-annoated(boot-strap)
Step4. EST and proteins are used to predict gene-models. The gff file from
step3. is used as model_gff. The resulting file is used as training
data-set for SNAP in step2
Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
contig_size to 10kb

Thanks and regards,
Parul Kudtarkar

I have attached the configuration file for each step.
> Your output has no genes.  They've all been filtered out.  The gene
predictions are left for reference purposes, but there are no gene models
> in the file.  You need to look at the type columns in the GFF3 file -->
match/match_part features are evidence and reference data but not
models.
> All models will have types gene/mRNA/exon/CDS.  For example if you just
want gene models in your file you can use the gff3_merge script with the
-g option, and it will only print out the gene models.
> I think you may be misinterpreting what is happening at different steps,
as well as how to read the result files.  Could you give me a detailed
explanation of what you expect to get back together with your control
files and I can walk you through the configuration, and indicate what to
expect.  Also what was the report like from CEGMA. Could you include the
report file that shows how complete your genome is and how fragmented it
is?
> Thanks,
> Carson
> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>Dear Carson,
>>Thanks for a quick response. keep_preds is set to 0
>>Though for previous step(ab-intio gene predictions keep_preds was set to
1, see Scaffold1_input.gff). I have also attached the output file
Scaffold1_out.gff.
>>Please advice.
>>Thanks and regards,
>>Parul Kudtarkar
>>> You should always get all predictions, but should only get models
(match/match_part) with AED scores less than 0.5.  You should never get
>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
keep_preds set.
>>> Do you have keeps_preds set or gene models with AED values above your
threshold (not match/match_part features)?  If the first one is the
>>>case,
>>> just set it to 0.  If the second one in the case, could you send me
example GFF3?
>>> Thanks,
>>> Carson
>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>Dear Carson,
>>>>Thanks once again, we have limited experimental data with very short
>>>> ESTs.
>>>>CEGMA is useful for us to gauge our gene-model.
>>>>On a different note to re-annotate genome(post evidence based
>>>>prediction(used as training dataset)and abinitio gene-prediction).
Here
>>>>are the control parameters I am using with AED score set to 0.5,
>>>> however
>>>> I
>>>>get predictions that includes the ones with AED score of 1.00 in
>>>> resulting
>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>> initial
>>>>gff3 file.
>>>>#-----Genome (Required for De-Novo Annotation)
>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>> eukaryotic
>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
no
>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>> no
>>>>#-----MAKER Behavior Options
>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
0
>>>>and 1)
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>partial
>>>>>at
>>>>> best.  You should seriously consider using mRNAseq to capture those
by
>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>trinity.
>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
size,
>>>>>just
>>>>> have maker skip them by setting the min_contig filter in the
maker_opts.ctl file.
>>>>> Thanks,
>>>>> Carson
>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
N50
>>>>>> of
>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>> when
>>>>>>filtering based on AED score 0.75 there are no gene models predicted
despite the model_gff file has few genes with scores less than 0.75?
Thanks and regards,
>>>>>>Parul Kudtarkar
>>>>>>> There are certain characteristics that are apparent in this
contig.
>>>>>>First
>>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>>have
>>>>>>very short ESTs, and because of the lengths you are probably getting
many
>>>>>>> of them to align spuriously which produces very short gene models
that
>>>>>>are
>>>>>>> more than likely false positives or at the very least just a piece
>>>>>>>of
>>>>>>>a
>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>> unless
>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>> protein
>>>>>>alignments also seem to be few and far between.  You probably need
to
>>>>>>add
>>>>>>> more proteins from a couple of related species, and you might
consider
>>>>>>using protein2genome rather than est2genome as a predictor if you
are
>>>>>>still working to generate a training set. Also est2genome produced
models
>>>>>>> almost always have an AED score near 0 so mixing est2genome with
the
>>>>>>AED_threshold with such limited protein support does create an
artificial
>>>>>>> bias to get back very short and incomplete models.
>>>>>>> How many contigs do you have in total and what is the N50 value
for
>>>>>>>the
>>>>>>assembly? If you have a large number of very short contigs, you will
>>>>>> get
>>>>>>very inflated gene counts because you get genes split across contigs
>>>>>> and
>>>>>>many contigs tend t be subtle rearrangements of other contigs just
assembled in a slightly different way (so you can get bits and
pieces
>>>>>> of
>>>>>>the same genes just rearranged).  This scenario is another
>>>>>> confounding
>>>>>>factor if using the est2genome predictor with short ESTs.  I would
recommend running CEGMA to get an estimate for the genome
>>>>>> completeness
>>>>>>as
>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>produced
>>>>>>> is a percent of genes that are found complete (end to end) vs
those
>>>>>>> that
>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
shorter
>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
gives
>>>>>>> a
>>>>>>high partial percentage and a low complete percentage, then this
>>>>>> pattern
>>>>>>can be expected to be even more exaggerated for other genes in the
genome.
>>>>>>> If your genome is highly fragmented or proteins do not align well
then
>>>>>>there are other strategies.  For example, some vertebrate genomes
end
>>>>>> up
>>>>>>having extremely fragmented assemblies (on the order of 100,000
contigs),
>>>>>>> and if they are distantly related to other annotated species few
>>>>>>proteins
>>>>>>> may align to the contigs because the introns in the alignments
tend
>>>>>>> to
>>>>>>be
>>>>>>> so long and exons so short that it pushes down the significance
scores
>>>>>>too
>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
only
>>>>>>> way
>>>>>>to get enough evidence to stitch gene models together.
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>Dear Carson and Daniel,
>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
The
>>>>>>input gff3 file was provided to option model_pred(see attached file
Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>> least
>>>>>>>> 5
>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>> predicted
>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>attached
>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>Thanks and regards,
>>>>>>>>Parul Kudtarkar
>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>just
>>>>>>>>>want
>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>maker.
>>>>>>>>>On
>>>>>>>>> the other hand, if you are trying to build a dataset for
training
>>>>>>>>> gene
>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>> dataset
>>>>>>>>>for
>>>>>>>>> SNAP training.  There are a number of filters available. Just
call
>>>>>>>>> the
>>>>>>script once without parameters to see the options.
>>>>>>>>> Thanks,
>>>>>>>>> Carson
>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>wrote:
>>>>>>>>>>Hi Parul,
>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
how
>>>>>>you
>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>Daniel
>>>>>>>>>>Daniel Ence
>>>>>>>>>>Graduate Student
>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>University of Utah
>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>________________________________________
>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>> Kudtarkar
>>>>>>[parulk at caltech.edu]
>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>Also, are there any other parameters that are required when
filtering
>>>>>>based on AED score?
>>>>>>>>>>> Hello Carson,
>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
models
>>>>>>>>>>>at
>>>>>>specific AED score.
>>>>>>>>>>> Alternatively if I were to do this within maker with regards
to
>>>>>>>>>>>parameters
>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>genes
>>>>>>>>>>>gff3
>>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>>Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
1
>>>>>>>>>>>> is
>>>>>>worst
>>>>>>>>>>>> as
>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
parameter
>>>>>>to
>>>>>>>>>>>> require better matching to the evidence by setting it closer
to
>>>>>>>>>>>>0.
>>>>>>>>>>>>You
>>>>>>>>>>>> can
>>>>>>>>>>>> also try to increase protein homology evidence as some of
your
>>>>>>calls
>>>>>>>>>>>>may
>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>> --Carson
>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>> based
>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
predictions, followed by boot-strapping. I would typically expect
20-30K
>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>> indicating
>>>>>>>>>>>>> too
>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>predication/script to retain predictions with AED score 1 and if yes
>>>>>>>>>>>>>how
>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>--
>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
-l
>>>>>>>>>>>>>ab
>>>>>>>>>>>>>.o
>>>>>>rg
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>--
>>>>>>>>>>Scientific Programmer
>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>Beckman Institute,
>>>>>>>>>>California Institute of Technology
>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
b.
>>>>>>>>>>or
>>>>>>>>>>g
>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
b.
>>>>>>>>>>or
>>>>>>>>>>g
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
.o
>>>>>>>>>rg
>>>>>>>>--
>>>>>>>>Scientific Programmer
>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>Beckman Institute,
>>>>>>>>California Institute of Technology
>>>>>>>>http://www.spbase.org
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org

--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org


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From carsonhh at gmail.com  Fri Dec  7 08:22:10 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 07 Dec 2012 10:22:10 -0500
Subject: [maker-devel] AED score
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>
Message-ID: <CCE76039.16D5C%carsonhh@gmail.com>

Just to add to Daniels comments.

Things to change in step 1:
> protein= <just try and add more protein evidence in general>
> est2genome=0
> protein2genome=1
> split_hit=20000
> min_contig=50000

Reasoning:
> Your ESTs are very short especially if this is a lamprey species which have
> very long introns and really short exons.  In lamprey (i.e. Petromyzon
> marinus), genes tend to be very long (remember gene lengths include introns
> and UTR and is not just the size of the coding sequence), so contigs shorter
> than 50kb are useless for training as you are unlikely to get nice complete
> gene models on those.  Also lampreys have very long introns, so you have to
> allow for bigger introns in alignments (split_hit parameter).  Finally add as
> much protein evidence from as many sources as possible.  Your maker training
> run will take a long time as proteins take forever to align, but because of
> the evolutionary distance of lamprey from everything else and the short exon
> structure of its genome, very little aligns directly to its genome from other
> deuterstome and vertebrate species.  I'm assuming this is a lamprey species
> because of what you said about the  augustus species file you are using.
> Really the only thing closely related to lampreys unfortunately are other
> lampreys.  Lancelets, hagfish, and sharks are not closely related to lamprey
> (while they branch closely together on the tree of life, there are too many
> years since the last common ancestor).  So while they may have similar issues
> related to annotation (long introns and short exons etc.) they will not really
> match that well for the gene predictor or even protein alignments.

Additional note:
> I have training files for the lamprey species Petromyzon marinus for both
> Augustus and SNAP that I could share with you in a few week, when the genome
> publication is is released.  But before that happens, new gene models will be
> available  through the UCSC browser (hopefully within a couple of weeks), and
> gene models are already available through ENSEMBL.  Get those protein files
> for training, it may be a big help for you.  If you want early access to the
> lamprey training files for Augustus and SNAP, you would have to request it
> from Weiming Li at Michigan State University (the head of that genome
> project).
> 


Things to change in step 2:
> Optimally you would be doing de novo training using mRNAseq results, but with
> on;ly sparse protein alignments and such a fragmented assembly, you are
> probably better off just trying to adapt the human HMM files.  They won't
> match that well, but you probably won't have the evidence for De Novo
> training.  First make a copy of the augustus human species directory and
> rename it to lamprey (cp -R  ?/augustus/config/species/human
> ?/augustus/config/species/lamprey).  Use it as the base species for retraining
> augustus using your new models.  You will have to edit multiple files in the
> directory after you copy it so that they no longer say human or homo sapiens
> internally or in the file name.  Use maker2zff to generate the filtered ZFF
> file for training SNAP, but don't train SNAP.  Rather use the training file to
> better train Augustus info here (just ignore the CEGMA part) -->
> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
> 
> MAKE a backup of the step 1 maker output directory and run step 2 in the old
> step 1 directory (this allows you to change the parameters and reuse files
> form step 1 so you don't have to recalculate all the protein and EST
> alignments).  So control files for step 2 are identical to step 1 except for
> these parameters.
> 
> protein2genome=0
> augustus_species=lamprey
> snaphmm=lamprey.hmm #optional if you decide to use SNAP
> 
> Don't both training SNAP here as you probably won't have enough data and you
> assembly is too fragmented for it to work well, so just stick to augustus.
> Try SNAP if you want just to see how well it works.  Manually open up the
> largest contigs in a viewer to look at the models produced from the MAKER run
> to see if they look reasonable (this will also help you decide whether to keep
> SNAP).
> 

Things to change in step 3:
> Step 3 should just be a clone of step 2 as it is bootstrapping.  But make
> copies of ?/augustus/config/species/lamprey and save it to
> ?/augustus/config/species/lamprey2 (editing all the files and names as you did
> in step 2). This way you don't loose that training data if you decide to step
> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
> 
> augustus_species=lamprey2
> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
> 
> Make a backup of Step 2 and run step 3 in the old Step 2 directory (This is
> for file reuse, so the step will run fast).  This must be the exact same step
> directory as step 2 for the reuse trick to work.
> 
> Manually review the models and if you are satisfied move to step 4.  Also note
> that most parameters including the protein, EST, and repeats should not change
> from step1-step3, and should not be removed for step 4 either, you can add
> more evidence, but don't remove evidence (like the repeats).
> 
> 
Things to change in step 4:
> For this step, just set min_contig=10000 and rerun MAKER inside the step 3
> directory to get the smaller contigs annotated.  This should be your final
> step, although you can try altering other parameters or adding more evidence
> sources here etc.
> 
> 
For other things to keep in mind, you should consider taking extra time to
build a comprehensive library of repeats for your species, I know that
Petromyzon marinus was virtually unannotatable until we had a very deep
repeat library built for it.  Any repeat library should be used in all
steps.  Also for lamprey, you will expect between 20,000-30,000 genes both
because of your assemblies fragmentation and because of some ancestral
genome duplication.  Also be aware that lampreys appear to undergo
programmed genome loss in somatic tissues, so any gene count you get is only
going to represent a maximum of 75-80% of all genes unless the assembly is
derived from germline tissue.

Thanks,
Carson


> 
On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:

> Hi Parul, 
> 
> In step one, if protein2genome isn't turned on, then the protein alignments
> wont be used to generate gene models. Carson said before to use protein2genome
> to generate gene models for your trainings set, but you should know that those
> data aren't being used right now.
> 
> In step 2, you can include the est and protein evidence that you used in step
> one, and the ab-initio predictors will takes those data as hints to guide
> their predictions. Also, are you reannotating human here? I'm just wondering
> why the snap file is called Pult, but the augustus species model is human.
> Also, I think you should include the same masking files from step 1, otherwise
> the ab-initio predictors will be predicting on the unmasked sequence which
> will give you many spurious predictions.
> 
> In step 3, I'm not certain what you mean by boot-strapping. The control file
> you sent for step 3 will just pass-through all of the data from before.
> 
> In step 4, I think what you'll get is pretty close to what you already had in
> step 3. The gene models from step 3 are already based on the est and protein
> data from step 1, so without giving any different evidence or ab-initio
> predictors, I think that you will just get the same gene models that you got
> from step 3. Those gene models are what you should be using to train snap.
> Also, is this the same genome as in the other steps? The genome file here is
> called genome.linear.fa, but before it was called genome.fa.
> 
> Step 5. So maker uses both evidence and ab-initio predictions to create
> models. If you don't give any evidence (EST or protein) maker will not
> annotate any gene models. You have also changed the augustus species model in
> this step, but I don't know what you've gained by going from one species to
> another. You should be training augustus with the gene models and then
> creating a new species model in augustus. As I understand it, the filter only
> operates on gene models, not ab-initio predictions or alignments, so it
> probably isn't doing anything the way you have it set.
> 
> Step 6. I think step 5 and 6 should be combined. I don't know what you mean by
> boot-strapping here too.
> 
> Hopefully that clears up some of the confusion with how maker works. Carson
> will probably have a lot of suggestions too.
> 
> Thanks,
> Daniel 
> 
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 10:08 AM
> To: carsonhh at gmail.com
> Cc: Daniel Ence; maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
> 
> Hi Carson,
> 
> Once again thanks for a quick response. We expect to get 25,000 to 30,000
> genes.
> Here are the step
> Step1. EST and proteins are used to predict gene-models. the resulting
> file is used as training data-set for SNAP in step2. est2genome is turned
> ON
> Step2. Augustus and SNAP is used to predict genes.
> Step3. The results are re-annoated(boot-strap)
> Step4. EST and proteins are used to predict gene-models. The gff file from
> step3. is used as model_gff. The resulting file is used as training
> data-set for SNAP in step2
> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
> contig_size to 10kb
> 
> Thanks and regards,
> Parul Kudtarkar
> 
> I have attached the configuration file for each step.
>>  Your output has no genes.  They've all been filtered out.  The gene
> predictions are left for reference purposes, but there are no gene models
>>  in the file.  You need to look at the type columns in the GFF3 file -->
> match/match_part features are evidence and reference data but not
> models.
>>  All models will have types gene/mRNA/exon/CDS.  For example if you just
> want gene models in your file you can use the gff3_merge script with the
> -g option, and it will only print out the gene models.
>>  I think you may be misinterpreting what is happening at different steps,
> as well as how to read the result files.  Could you give me a detailed
> explanation of what you expect to get back together with your control
> files and I can walk you through the configuration, and indicate what to
> expect.  Also what was the report like from CEGMA. Could you include the
> report file that shows how complete your genome is and how fragmented it
> is?
>>  Thanks,
>>  Carson
>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>> Dear Carson,
>>> Thanks for a quick response. keep_preds is set to 0
>>> Though for previous step(ab-intio gene predictions keep_preds was set to
> 1, see Scaffold1_input.gff). I have also attached the output file
> Scaffold1_out.gff.
>>> Please advice.
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>>  You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>>>>  Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the
>>>> case,
>>>>  just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>>>>  Thanks,
>>>>  Carson
>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>> Dear Carson,
>>>>> Thanks once again, we have limited experimental data with very short
>>>>>  ESTs.
>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>> On a different note to re-annotate genome(post evidence based
>>>>> prediction(used as training dataset)and abinitio gene-prediction).
> Here
>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>  however
>>>>>  I
>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>  resulting
>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>  initial
>>>>> gff3 file.
>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>  eukaryotic
>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
> no
>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>  no
>>>>> #-----MAKER Behavior Options
>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
> 0
>>>>> and 1)
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>> partial
>>>>>> at
>>>>>>  best.  You should seriously consider using mRNAseq to capture those
> by
>>>>>>  using maker's est_gff option to pass in results from cufflinks or
>>>>>> trinity.
>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
> size,
>>>>>> just
>>>>>>  have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>>>>>>  Thanks,
>>>>>>  Carson
>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Thanks for the guidance Carson, total contig size is 330,611 with
> N50
>>>>>>>  of
>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>>  when
>>>>>>> filtering based on AED score 0.75 there are no gene models predicted
> despite the model_gff file has few genes with scores less than 0.75?
> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>  There are certain characteristics that are apparent in this
> contig.
>>>>>>> First
>>>>>>>  it seems to be repeat rich with a very low gene density.  You also
>>>>>>> have
>>>>>>> very short ESTs, and because of the lengths you are probably getting
> many
>>>>>>>  of them to align spuriously which produces very short gene models
> that
>>>>>>> are
>>>>>>>  more than likely false positives or at the very least just a piece
>>>>>>> of
>>>>>>> a
>>>>>>> gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>  unless
>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>  protein
>>>>>>> alignments also seem to be few and far between.  You probably need
> to
>>>>>>> add
>>>>>>>  more proteins from a couple of related species, and you might
> consider
>>>>>>> using protein2genome rather than est2genome as a predictor if you
> are
>>>>>>> still working to generate a training set. Also est2genome produced
> models
>>>>>>>  almost always have an AED score near 0 so mixing est2genome with
> the
>>>>>>> AED_threshold with such limited protein support does create an
> artificial
>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>  How many contigs do you have in total and what is the N50 value
> for
>>>>>>> the
>>>>>>> assembly? If you have a large number of very short contigs, you will
>>>>>>>  get
>>>>>>> very inflated gene counts because you get genes split across contigs
>>>>>>>  and
>>>>>>> many contigs tend t be subtle rearrangements of other contigs just
> assembled in a slightly different way (so you can get bits and
> pieces
>>>>>>>  of
>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>  confounding
>>>>>>> factor if using the est2genome predictor with short ESTs.  I would
> recommend running CEGMA to get an estimate for the genome
>>>>>>>  completeness
>>>>>>> as
>>>>>>>  well as get an estimate of fragmentation as one of the statistics
>>>>>>> produced
>>>>>>>  is a percent of genes that are found complete (end to end) vs
> those
>>>>>>>  that
>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to be
> shorter
>>>>>>>  and less intron rich than other genes in the genome, so if CEGMA
> gives
>>>>>>>  a
>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>  pattern
>>>>>>> can be expected to be even more exaggerated for other genes in the
> genome.
>>>>>>>  If your genome is highly fragmented or proteins do not align well
> then
>>>>>>> there are other strategies.  For example, some vertebrate genomes
> end
>>>>>>>  up
>>>>>>> having extremely fragmented assemblies (on the order of 100,000
> contigs),
>>>>>>>  and if they are distantly related to other annotated species few
>>>>>>> proteins
>>>>>>>  may align to the contigs because the introns in the alignments
> tend
>>>>>>>  to
>>>>>>> be
>>>>>>>  so long and exons so short that it pushes down the significance
> scores
>>>>>>> too
>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
> only
>>>>>>>  way
>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Dear Carson and Daniel,
>>>>>>> Thanks. I ran sample file for filtering genes based on AED score.
> The
>>>>>>> input gff3 file was provided to option model_pred(see attached file
> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>  least
>>>>>>>  5
>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>  predicted
>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>> attached
>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>> just
>>>>>>> want
>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>> maker.
>>>>>>> On
>>>>>>>  the other hand, if you are trying to build a dataset for
> training
>>>>>>>  gene
>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>  dataset
>>>>>>> for
>>>>>>>  SNAP training.  There are a number of filters available. Just
> call
>>>>>>>  the
>>>>>>> script once without parameters to see the options.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>> wrote:
>>>>>>> Hi Parul,
>>>>>>> I think the way you described (with the maker_opts.ctl file) is
> how
>>>>>>> you
>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>> Daniel
>>>>>>> Daniel Ence
>>>>>>> Graduate Student
>>>>>>> Eccles Institute of Human Genetics
>>>>>>> University of Utah
>>>>>>> 15 North 2030 East, Room 2100
>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>> ________________________________________
>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>  Kudtarkar
>>>>>>> [parulk at caltech.edu]
>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>> To: Parul Kudtarkar
>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>> Also, are there any other parameters that are required when
> filtering
>>>>>>> based on AED score?
>>>>>>>  Hello Carson,
>>>>>>>  Just to confirm, Is there a script that would filter gene
> models
>>>>>>> at
>>>>>>> specific AED score.
>>>>>>>  Alternatively if I were to do this within maker with regards
> to
>>>>>>> parameters
>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>> genes
>>>>>>> gff3
>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>> Thanks and regards,
>>>>>>>  Parul Kudtarkar
>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
> 1
>>>>>>>  is
>>>>>>> worst
>>>>>>>  as
>>>>>>>  it is a distance metric.  You can use the AED_threshold
> parameter
>>>>>>> to
>>>>>>>  require better matching to the evidence by setting it closer
> to
>>>>>>> 0.
>>>>>>> You
>>>>>>>  can
>>>>>>>  also try to increase protein homology evidence as some of
> your
>>>>>>> calls
>>>>>>> may
>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>  --Carson
>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>> wrote:
>>>>>>> Dear Maker community,
>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>  based
>>>>>>> prediction, I use this data-set to train SNAP as well as Augustus
> predictions, followed by boot-strapping. I would typically expect
> 20-30K
>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>  indicating
>>>>>>>  too
>>>>>>> many false positives. Is there a way to further refine these
>>>>>>> predication/script to retain predictions with AED score 1 and if yes
>>>>>>> how
>>>>>>> to go about this?
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
> -l
>>>>>>> ab
>>>>>>> .o
>>>>>>> rg
>>>>>>>  --
>>>>>>>  Scientific Programmer
>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>  Beckman Institute,
>>>>>>>  California Institute of Technology
>>>>>>>  http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>> or
>>>>>>> g
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>> or
>>>>>>> g
>>>>>>>  _______________________________________________
>>>>>>>  maker-devel mailing list
>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
> .o
>>>>>>> rg
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
> 
> 
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
> 
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
> 
> 
> 


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From carsonhh at gmail.com  Fri Dec  7 08:27:22 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 07 Dec 2012 10:27:22 -0500
Subject: [maker-devel] AED score
In-Reply-To: <4347.131.215.15.234.1354834302.squirrel@webmail.caltech.edu>
Message-ID: <CCE77471.16E05%carsonhh@gmail.com>

Don't use keep_preds on any of your steps.  That should really only be
used for Fungi, Oomycetes, or some insect species.  Other genomes with
long introns and short exons like tend to overcall so you will get way to
many false positives.  I gave a more detailed explanation of what I would
do in my other e-mail.

--Carson

On 12-12-06 5:51 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Daniel,
>
>Once again thanks for extensive help. We get over estimation of number of
>genes at the end of step 2. So was wondering if there is a way to pick
>only the best annotated. That been said assembly, ESTs and proteins are
>not good and I am currently in process of running cegma.
>
>Also for step 2(ab-initio gene-prediction using SNAP and Augustus) is it
>best to turn off  keep_preds to remove any possible false-positives. Also
>should est2genome turned ON? Of course as pointed in previous email use
>est,proteins apart from training data to generate better gene-model and
>repeat masking as well to mask repeats for ab-initio predictors?
>I believe while running gff3_merge it is best to use option -g to get only
>the gene-predictions and filter evidence.
>
>Thanks and regards,
>Parul Kudtarkar
>
>> Hi Parul,
>> I dont' really have many suggestions for improving the gene models after
>> the annotation is done. Annotation is very dependent on the data you
>>have
>> at hand (the assembly, ESTs and proteins). One thing you could do to get
>> more annotations is to run something like iprscan on the ab-initio
>> predictions that didn't overlap any evidence and look for predictions
>>that
>> contain a pfam domain. Then you can send those predictions back through
>> maker and promote them to gene model status.
>>
>> Do you have the CEGMA results that Carson asked about? That really will
>> tell you what kind of annotation results you can expect. If the assembly
>> doesn't have an N50 greater than the expected median gene size, then you
>> can't expect very good results from automated annotation.
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: Parul Kudtarkar [parulk at caltech.edu]
>> Sent: Thursday, December 06, 2012 1:28 PM
>> To: Daniel Ence
>> Cc: maker-devel at yandell-lab.org
>> Subject: Re: [maker-devel] AED score
>>
>> Dear Daniel,
>>
>> Thanks for clearing doubts. For augustus I am using the closest
>> species(lamprey) to species we are annotating. For SNAP the training
>> set(hmm file) is generated using predictions made from evidence based
>> gene-predictions(sorry the file name was mis-leading). I think STEP 3-6
>> are not required(more or less repetitive without further improving
>> genemodel). Post Step 1(generating training data for SNAP using evidence
>> based prediction) and Step2(ab-initio gene-prediction using SNAP and
>> augustus) do you have recommendations for further improving the gene
>> model?
>>
>> Thanks and regards,
>> Parul Kudtarkar
>>
>>> Hi Parul,
>>>
>>> In step one, if protein2genome isn't turned on, then the protein
>>> alignments wont be used to generate gene models. Carson said before to
>>> use
>>> protein2genome to generate gene models for your trainings set, but you
>>> should know that those data aren't being used right now.
>>>
>>> In step 2, you can include the est and protein evidence that you used
>>>in
>>> step one, and the ab-initio predictors will takes those data as hints
>>>to
>>> guide their predictions. Also, are you reannotating human here? I'm
>>>just
>>> wondering why the snap file is called Pult, but the augustus species
>>> model
>>> is human. Also, I think you should include the same masking files from
>>> step 1, otherwise the ab-initio predictors will be predicting on the
>>> unmasked sequence which will give you many spurious predictions.
>>>
>>> In step 3, I'm not certain what you mean by boot-strapping. The control
>>> file you sent for step 3 will just pass-through all of the data from
>>> before.
>>>
>>> In step 4, I think what you'll get is pretty close to what you already
>>> had
>>> in step 3. The gene models from step 3 are already based on the est and
>>> protein data from step 1, so without giving any different evidence or
>>> ab-initio predictors, I think that you will just get the same gene
>>> models
>>> that you got from step 3. Those gene models are what you should be
>>>using
>>> to train snap. Also, is this the same genome as in the other steps? The
>>> genome file here is called genome.linear.fa, but before it was called
>>> genome.fa.
>>>
>>> Step 5. So maker uses both evidence and ab-initio predictions to create
>>> models. If you don't give any evidence (EST or protein) maker will not
>>> annotate any gene models. You have also changed the augustus species
>>> model
>>> in this step, but I don't know what you've gained by going from one
>>> species to another. You should be training augustus with the gene
>>>models
>>> and then creating a new species model in augustus. As I understand it,
>>> the
>>> filter only operates on gene models, not ab-initio predictions or
>>> alignments, so it probably isn't doing anything the way you have it
>>>set.
>>>
>>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>>> mean by boot-strapping here too.
>>>
>>> Hopefully that clears up some of the confusion with how maker works.
>>> Carson will probably have a lot of suggestions too.
>>>
>>> Thanks,
>>> Daniel
>>>
>>> Daniel Ence
>>> Graduate Student
>>> Eccles Institute of Human Genetics
>>> University of Utah
>>> 15 North 2030 East, Room 2100
>>> Salt Lake City, UT 84112-5330
>>> ________________________________________
>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>> Sent: Thursday, December 06, 2012 10:08 AM
>>> To: carsonhh at gmail.com
>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>> Subject: Re: [maker-devel] AED score
>>>
>>> Hi Carson,
>>>
>>> Once again thanks for a quick response. We expect to get 25,000 to
>>> 30,000
>>> genes.
>>> Here are the step
>>> Step1. EST and proteins are used to predict gene-models. the resulting
>>> file is used as training data-set for SNAP in step2. est2genome is
>>> turned
>>> ON
>>> Step2. Augustus and SNAP is used to predict genes.
>>> Step3. The results are re-annoated(boot-strap)
>>> Step4. EST and proteins are used to predict gene-models. The gff file
>>> from
>>> step3. is used as model_gff. The resulting file is used as training
>>> data-set for SNAP in step2
>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>>> contig_size to 10kb
>>>
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>
>>> I have attached the configuration file for each step.
>>>> Your output has no genes.  They've all been filtered out.  The gene
>>> predictions are left for reference purposes, but there are no gene
>>> models
>>>> in the file.  You need to look at the type columns in the GFF3 file
>>>>-->
>>> match/match_part features are evidence and reference data but not
>>> models.
>>>> All models will have types gene/mRNA/exon/CDS.  For example if you
>>>>just
>>> want gene models in your file you can use the gff3_merge script with
>>>the
>>> -g option, and it will only print out the gene models.
>>>> I think you may be misinterpreting what is happening at different
>>>> steps,
>>> as well as how to read the result files.  Could you give me a detailed
>>> explanation of what you expect to get back together with your control
>>> files and I can walk you through the configuration, and indicate what
>>>to
>>> expect.  Also what was the report like from CEGMA. Could you include
>>>the
>>> report file that shows how complete your genome is and how fragmented
>>>it
>>> is?
>>>> Thanks,
>>>> Carson
>>>> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>Dear Carson,
>>>>>Thanks for a quick response. keep_preds is set to 0
>>>>>Though for previous step(ab-intio gene predictions keep_preds was set
>>>>> to
>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>> Scaffold1_out.gff.
>>>>>Please advice.
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>> You should always get all predictions, but should only get models
>>> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>> keep_preds set.
>>>>>> Do you have keeps_preds set or gene models with AED values above
>>>>>>your
>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>case,
>>>>>> just set it to 0.  If the second one in the case, could you send me
>>> example GFF3?
>>>>>> Thanks,
>>>>>> Carson
>>>>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>Dear Carson,
>>>>>>>Thanks once again, we have limited experimental data with very short
>>>>>>> ESTs.
>>>>>>>CEGMA is useful for us to gauge our gene-model.
>>>>>>>On a different note to re-annotate genome(post evidence based
>>>>>>>prediction(used as training dataset)and abinitio gene-prediction).
>>> Here
>>>>>>>are the control parameters I am using with AED score set to 0.5,
>>>>>>> however
>>>>>>> I
>>>>>>>get predictions that includes the ones with AED score of 1.00 in
>>>>>>> resulting
>>>>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>> initial
>>>>>>>gff3 file.
>>>>>>>#-----Genome (Required for De-Novo Annotation)
>>>>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>> eukaryotic
>>>>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>>file
>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0
>>>>>>> =
>>> no
>>>>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 =
>>>>>>>no
>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>> no
>>>>>>>#-----MAKER Behavior Options
>>>>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound
>>>>>>>by
>>> 0
>>>>>>>and 1)
>>>>>>>Thanks and regards,
>>>>>>>Parul Kudtarkar
>>>>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>>partial
>>>>>>>>at
>>>>>>>> best.  You should seriously consider using mRNAseq to capture
>>>>>>>>those
>>> by
>>>>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>>>>trinity.
>>>>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
>>> size,
>>>>>>>>just
>>>>>>>> have maker skip them by setting the min_contig filter in the
>>> maker_opts.ctl file.
>>>>>>>> Thanks,
>>>>>>>> Carson
>>>>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
>>> N50
>>>>>>>>> of
>>>>>>>>>39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>reason
>>>>>>>>> when
>>>>>>>>>filtering based on AED score 0.75 there are no gene models
>>>>>>>>> predicted
>>> despite the model_gff file has few genes with scores less than 0.75?
>>> Thanks and regards,
>>>>>>>>>Parul Kudtarkar
>>>>>>>>>> There are certain characteristics that are apparent in this
>>> contig.
>>>>>>>>>First
>>>>>>>>>> it seems to be repeat rich with a very low gene density.  You
>>>>>>>>>> also
>>>>>>>>>>have
>>>>>>>>>very short ESTs, and because of the lengths you are probably
>>>>>>>>> getting
>>> many
>>>>>>>>>> of them to align spuriously which produces very short gene
>>>>>>>>>>models
>>> that
>>>>>>>>>are
>>>>>>>>>> more than likely false positives or at the very least just a
>>>>>>>>>> piece
>>>>>>>>>>of
>>>>>>>>>>a
>>>>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>>> unless
>>>>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>> protein
>>>>>>>>>alignments also seem to be few and far between.  You probably need
>>> to
>>>>>>>>>add
>>>>>>>>>> more proteins from a couple of related species, and you might
>>> consider
>>>>>>>>>using protein2genome rather than est2genome as a predictor if you
>>> are
>>>>>>>>>still working to generate a training set. Also est2genome produced
>>> models
>>>>>>>>>> almost always have an AED score near 0 so mixing est2genome with
>>> the
>>>>>>>>>AED_threshold with such limited protein support does create an
>>> artificial
>>>>>>>>>> bias to get back very short and incomplete models.
>>>>>>>>>> How many contigs do you have in total and what is the N50 value
>>> for
>>>>>>>>>>the
>>>>>>>>>assembly? If you have a large number of very short contigs, you
>>>>>>>>> will
>>>>>>>>> get
>>>>>>>>>very inflated gene counts because you get genes split across
>>>>>>>>> contigs
>>>>>>>>> and
>>>>>>>>>many contigs tend t be subtle rearrangements of other contigs just
>>> assembled in a slightly different way (so you can get bits and
>>> pieces
>>>>>>>>> of
>>>>>>>>>the same genes just rearranged).  This scenario is another
>>>>>>>>> confounding
>>>>>>>>>factor if using the est2genome predictor with short ESTs.  I would
>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>> completeness
>>>>>>>>>as
>>>>>>>>>> well as get an estimate of fragmentation as one of the
>>>>>>>>>>statistics
>>>>>>>>>produced
>>>>>>>>>> is a percent of genes that are found complete (end to end) vs
>>> those
>>>>>>>>>> that
>>>>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
>>> shorter
>>>>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
>>> gives
>>>>>>>>>> a
>>>>>>>>>high partial percentage and a low complete percentage, then this
>>>>>>>>> pattern
>>>>>>>>>can be expected to be even more exaggerated for other genes in the
>>> genome.
>>>>>>>>>> If your genome is highly fragmented or proteins do not align
>>>>>>>>>>well
>>> then
>>>>>>>>>there are other strategies.  For example, some vertebrate genomes
>>> end
>>>>>>>>> up
>>>>>>>>>having extremely fragmented assemblies (on the order of 100,000
>>> contigs),
>>>>>>>>>> and if they are distantly related to other annotated species few
>>>>>>>>>proteins
>>>>>>>>>> may align to the contigs because the introns in the alignments
>>> tend
>>>>>>>>>> to
>>>>>>>>>be
>>>>>>>>>> so long and exons so short that it pushes down the significance
>>> scores
>>>>>>>>>too
>>>>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
>>> only
>>>>>>>>>> way
>>>>>>>>>to get enough evidence to stitch gene models together.
>>>>>>>>>> Thanks,
>>>>>>>>>> Carson
>>>>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>>>Dear Carson and Daniel,
>>>>>>>>>>>Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>score.
>>> The
>>>>>>>>>input gff3 file was provided to option model_pred(see attached
>>>>>>>>>file
>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>> least
>>>>>>>>>>> 5
>>>>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>>>>> predicted
>>>>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>>>>attached
>>>>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>>>just
>>>>>>>>>>>>want
>>>>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>>>>maker.
>>>>>>>>>>>>On
>>>>>>>>>>>> the other hand, if you are trying to build a dataset for
>>> training
>>>>>>>>>>>> gene
>>>>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>>>>> dataset
>>>>>>>>>>>>for
>>>>>>>>>>>> SNAP training.  There are a number of filters available. Just
>>> call
>>>>>>>>>>>> the
>>>>>>>>>script once without parameters to see the options.
>>>>>>>>>>>> Thanks,
>>>>>>>>>>>> Carson
>>>>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>Hi Parul,
>>>>>>>>>>>>>I think the way you described (with the maker_opts.ctl file)
>>>>>>>>>>>>>is
>>> how
>>>>>>>>>you
>>>>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>>>>Daniel
>>>>>>>>>>>>>Daniel Ence
>>>>>>>>>>>>>Graduate Student
>>>>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>>>>University of Utah
>>>>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>>>>________________________________________
>>>>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>>> Kudtarkar
>>>>>>>>>[parulk at caltech.edu]
>>>>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>>>>Also, are there any other parameters that are required when
>>> filtering
>>>>>>>>>based on AED score?
>>>>>>>>>>>>>> Hello Carson,
>>>>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
>>> models
>>>>>>>>>>>>>>at
>>>>>>>>>specific AED score.
>>>>>>>>>>>>>> Alternatively if I were to do this within maker with regards
>>> to
>>>>>>>>>>>>>>parameters
>>>>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>>>genes
>>>>>>>>>>>>>>gff3
>>>>>>>>>>>>>> file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>>> threshold?
>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best
>>>>>>>>>>>>>>>and
>>> 1
>>>>>>>>>>>>>>> is
>>>>>>>>>worst
>>>>>>>>>>>>>>> as
>>>>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
>>> parameter
>>>>>>>>>to
>>>>>>>>>>>>>>> require better matching to the evidence by setting it
>>>>>>>>>>>>>>>closer
>>> to
>>>>>>>>>>>>>>>0.
>>>>>>>>>>>>>>>You
>>>>>>>>>>>>>>> can
>>>>>>>>>>>>>>> also try to increase protein homology evidence as some of
>>> your
>>>>>>>>>calls
>>>>>>>>>>>>>>>may
>>>>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>>>>> --Carson
>>>>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>>>> based
>>>>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
>>> predictions, followed by boot-strapping. I would typically expect
>>> 20-30K
>>>>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>>>> indicating
>>>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>>>many false positives. Is there a way to further refine
>>>>>>>>>>>>>>>>these
>>>>>>>>>predication/script to retain predictions with AED score 1 and if
>>>>>>>>> yes
>>>>>>>>>>>>>>>>how
>>>>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>>>>--
>>>>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yan
>>>>>>>>>>>>>>>>dell
>>> -l
>>>>>>>>>>>>>>>>ab
>>>>>>>>>>>>>>>>.o
>>>>>>>>>rg
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>>--
>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandel
>>>>>>>>>>>>>l-la
>>> b.
>>>>>>>>>>>>>or
>>>>>>>>>>>>>g
>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandel
>>>>>>>>>>>>>l-la
>>> b.
>>>>>>>>>>>>>or
>>>>>>>>>>>>>g
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-lab
>>> .o
>>>>>>>>>>>>rg
>>>>>>>>>>>--
>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>>
>>>
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>>
>>
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>
>
>_______________________________________________
>maker-devel mailing list
>maker-devel at box290.bluehost.com
>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org





From carsonhh at gmail.com  Fri Dec  7 08:47:39 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 07 Dec 2012 10:47:39 -0500
Subject: [maker-devel] AED score
In-Reply-To: <CCE77415.16E00%carsonhh@gmail.com>
Message-ID: <CCE77941.16E3D%carsonhh@gmail.com>

For step 2 and 3, use lamprey rather than human in augustus.  For some
reason the current version of augustus doesn't diplay it as an option for
the species help menu (so I didn't see it), but it's there in
?/augustus/config/species/lamprey

For any additional training, make copies into
?/augustus/config/species/lamprey2 and ?/augustus/config/species/lamprey3

Thanks,
Carson



From:  Carson Holt <carsonhh at gmail.com>
Date:  Friday, 7 December, 2012 10:22 AM
To:  Daniel Ence <dence at genetics.utah.edu>, "maker-devel at yandell-lab.org"
<maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
Subject:  Re: [maker-devel] AED score

Just to add to Daniels comments.

Things to change in step 1:
> protein= <just try and add more protein evidence in general>
> est2genome=0
> protein2genome=1
> split_hit=20000
> min_contig=50000

Reasoning:
> Your ESTs are very short especially if this is a lamprey species which have
> very long introns and really short exons.  In lamprey (i.e. Petromyzon
> marinus), genes tend to be very long (remember gene lengths include introns
> and UTR and is not just the size of the coding sequence), so contigs shorter
> than 50kb are useless for training as you are unlikely to get nice complete
> gene models on those.  Also lampreys have very long introns, so you have to
> allow for bigger introns in alignments (split_hit parameter).  Finally add as
> much protein evidence from as many sources as possible.  Your maker training
> run will take a long time as proteins take forever to align, but because of
> the evolutionary distance of lamprey from everything else and the short exon
> structure of its genome, very little aligns directly to its genome from other
> deuterstome and vertebrate species.  I'm assuming this is a lamprey species
> because of what you said about the  augustus species file you are using.
> Really the only thing closely related to lampreys unfortunately are other
> lampreys.  Lancelets, hagfish, and sharks are not closely related to lamprey
> (while they branch closely together on the tree of life, there are too many
> years since the last common ancestor).  So while they may have similar issues
> related to annotation (long introns and short exons etc.) they will not really
> match that well for the gene predictor or even protein alignments.

Additional note:
> I have training files for the lamprey species Petromyzon marinus for both
> Augustus and SNAP that I could share with you in a few week, when the genome
> publication is is released.  But before that happens, new gene models will be
> available  through the UCSC browser (hopefully within a couple of weeks), and
> gene models are already available through ENSEMBL.  Get those protein files
> for training, it may be a big help for you.  If you want early access to the
> lamprey training files for Augustus and SNAP, you would have to request it
> from Weiming Li at Michigan State University (the head of that genome
> project).
> 


Things to change in step 2:
> Optimally you would be doing de novo training using mRNAseq results, but with
> on;ly sparse protein alignments and such a fragmented assembly, you are
> probably better off just trying to adapt the human HMM files.  They won't
> match that well, but you probably won't have the evidence for De Novo
> training.  First make a copy of the augustus human species directory and
> rename it to lamprey (cp -R  ?/augustus/config/species/human
> ?/augustus/config/species/lamprey).  Use it as the base species for retraining
> augustus using your new models.  You will have to edit multiple files in the
> directory after you copy it so that they no longer say human or homo sapiens
> internally or in the file name.  Use maker2zff to generate the filtered ZFF
> file for training SNAP, but don't train SNAP.  Rather use the training file to
> better train Augustus info here (just ignore the CEGMA part) -->
> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
> 
> MAKE a backup of the step 1 maker output directory and run step 2 in the old
> step 1 directory (this allows you to change the parameters and reuse files
> form step 1 so you don't have to recalculate all the protein and EST
> alignments).  So control files for step 2 are identical to step 1 except for
> these parameters.
> 
> protein2genome=0
> augustus_species=lamprey
> snaphmm=lamprey.hmm #optional if you decide to use SNAP
> 
> Don't both training SNAP here as you probably won't have enough data and you
> assembly is too fragmented for it to work well, so just stick to augustus.
> Try SNAP if you want just to see how well it works.  Manually open up the
> largest contigs in a viewer to look at the models produced from the MAKER run
> to see if they look reasonable (this will also help you decide whether to keep
> SNAP).
> 

Things to change in step 3:
> Step 3 should just be a clone of step 2 as it is bootstrapping.  But make
> copies of ?/augustus/config/species/lamprey and save it to
> ?/augustus/config/species/lamprey2 (editing all the files and names as you did
> in step 2). This way you don't loose that training data if you decide to step
> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
> 
> augustus_species=lamprey2
> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
> 
> Make a backup of Step 2 and run step 3 in the old Step 2 directory (This is
> for file reuse, so the step will run fast).  This must be the exact same step
> directory as step 2 for the reuse trick to work.
> 
> Manually review the models and if you are satisfied move to step 4.  Also note
> that most parameters including the protein, EST, and repeats should not change
> from step1-step3, and should not be removed for step 4 either, you can add
> more evidence, but don't remove evidence (like the repeats).
> 
> 
Things to change in step 4:
> For this step, just set min_contig=10000 and rerun MAKER inside the step 3
> directory to get the smaller contigs annotated.  This should be your final
> step, although you can try altering other parameters or adding more evidence
> sources here etc.
> 
> 
For other things to keep in mind, you should consider taking extra time to
build a comprehensive library of repeats for your species, I know that
Petromyzon marinus was virtually unannotatable until we had a very deep
repeat library built for it.  Any repeat library should be used in all
steps.  Also for lamprey, you will expect between 20,000-30,000 genes both
because of your assemblies fragmentation and because of some ancestral
genome duplication.  Also be aware that lampreys appear to undergo
programmed genome loss in somatic tissues, so any gene count you get is only
going to represent a maximum of 75-80% of all genes unless the assembly is
derived from germline tissue.

Thanks,
Carson


> 
On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:

> Hi Parul, 
> 
> In step one, if protein2genome isn't turned on, then the protein alignments
> wont be used to generate gene models. Carson said before to use protein2genome
> to generate gene models for your trainings set, but you should know that those
> data aren't being used right now.
> 
> In step 2, you can include the est and protein evidence that you used in step
> one, and the ab-initio predictors will takes those data as hints to guide
> their predictions. Also, are you reannotating human here? I'm just wondering
> why the snap file is called Pult, but the augustus species model is human.
> Also, I think you should include the same masking files from step 1, otherwise
> the ab-initio predictors will be predicting on the unmasked sequence which
> will give you many spurious predictions.
> 
> In step 3, I'm not certain what you mean by boot-strapping. The control file
> you sent for step 3 will just pass-through all of the data from before.
> 
> In step 4, I think what you'll get is pretty close to what you already had in
> step 3. The gene models from step 3 are already based on the est and protein
> data from step 1, so without giving any different evidence or ab-initio
> predictors, I think that you will just get the same gene models that you got
> from step 3. Those gene models are what you should be using to train snap.
> Also, is this the same genome as in the other steps? The genome file here is
> called genome.linear.fa, but before it was called genome.fa.
> 
> Step 5. So maker uses both evidence and ab-initio predictions to create
> models. If you don't give any evidence (EST or protein) maker will not
> annotate any gene models. You have also changed the augustus species model in
> this step, but I don't know what you've gained by going from one species to
> another. You should be training augustus with the gene models and then
> creating a new species model in augustus. As I understand it, the filter only
> operates on gene models, not ab-initio predictions or alignments, so it
> probably isn't doing anything the way you have it set.
> 
> Step 6. I think step 5 and 6 should be combined. I don't know what you mean by
> boot-strapping here too.
> 
> Hopefully that clears up some of the confusion with how maker works. Carson
> will probably have a lot of suggestions too.
> 
> Thanks,
> Daniel 
> 
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 10:08 AM
> To: carsonhh at gmail.com
> Cc: Daniel Ence; maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
> 
> Hi Carson,
> 
> Once again thanks for a quick response. We expect to get 25,000 to 30,000
> genes.
> Here are the step
> Step1. EST and proteins are used to predict gene-models. the resulting
> file is used as training data-set for SNAP in step2. est2genome is turned
> ON
> Step2. Augustus and SNAP is used to predict genes.
> Step3. The results are re-annoated(boot-strap)
> Step4. EST and proteins are used to predict gene-models. The gff file from
> step3. is used as model_gff. The resulting file is used as training
> data-set for SNAP in step2
> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
> contig_size to 10kb
> 
> Thanks and regards,
> Parul Kudtarkar
> 
> I have attached the configuration file for each step.
>>  Your output has no genes.  They've all been filtered out.  The gene
> predictions are left for reference purposes, but there are no gene models
>>  in the file.  You need to look at the type columns in the GFF3 file -->
> match/match_part features are evidence and reference data but not
> models.
>>  All models will have types gene/mRNA/exon/CDS.  For example if you just
> want gene models in your file you can use the gff3_merge script with the
> -g option, and it will only print out the gene models.
>>  I think you may be misinterpreting what is happening at different steps,
> as well as how to read the result files.  Could you give me a detailed
> explanation of what you expect to get back together with your control
> files and I can walk you through the configuration, and indicate what to
> expect.  Also what was the report like from CEGMA. Could you include the
> report file that shows how complete your genome is and how fragmented it
> is?
>>  Thanks,
>>  Carson
>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>> Dear Carson,
>>> Thanks for a quick response. keep_preds is set to 0
>>> Though for previous step(ab-intio gene predictions keep_preds was set to
> 1, see Scaffold1_input.gff). I have also attached the output file
> Scaffold1_out.gff.
>>> Please advice.
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>>  You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>>>>  Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the
>>>> case,
>>>>  just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>>>>  Thanks,
>>>>  Carson
>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>> Dear Carson,
>>>>> Thanks once again, we have limited experimental data with very short
>>>>>  ESTs.
>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>> On a different note to re-annotate genome(post evidence based
>>>>> prediction(used as training dataset)and abinitio gene-prediction).
> Here
>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>  however
>>>>>  I
>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>  resulting
>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>  initial
>>>>> gff3 file.
>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>  eukaryotic
>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
> no
>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>  no
>>>>> #-----MAKER Behavior Options
>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
> 0
>>>>> and 1)
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>> partial
>>>>>> at
>>>>>>  best.  You should seriously consider using mRNAseq to capture those
> by
>>>>>>  using maker's est_gff option to pass in results from cufflinks or
>>>>>> trinity.
>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
> size,
>>>>>> just
>>>>>>  have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>>>>>>  Thanks,
>>>>>>  Carson
>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Thanks for the guidance Carson, total contig size is 330,611 with
> N50
>>>>>>>  of
>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>>  when
>>>>>>> filtering based on AED score 0.75 there are no gene models predicted
> despite the model_gff file has few genes with scores less than 0.75?
> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>  There are certain characteristics that are apparent in this
> contig.
>>>>>>> First
>>>>>>>  it seems to be repeat rich with a very low gene density.  You also
>>>>>>> have
>>>>>>> very short ESTs, and because of the lengths you are probably getting
> many
>>>>>>>  of them to align spuriously which produces very short gene models
> that
>>>>>>> are
>>>>>>>  more than likely false positives or at the very least just a piece
>>>>>>> of
>>>>>>> a
>>>>>>> gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>  unless
>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>  protein
>>>>>>> alignments also seem to be few and far between.  You probably need
> to
>>>>>>> add
>>>>>>>  more proteins from a couple of related species, and you might
> consider
>>>>>>> using protein2genome rather than est2genome as a predictor if you
> are
>>>>>>> still working to generate a training set. Also est2genome produced
> models
>>>>>>>  almost always have an AED score near 0 so mixing est2genome with
> the
>>>>>>> AED_threshold with such limited protein support does create an
> artificial
>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>  How many contigs do you have in total and what is the N50 value
> for
>>>>>>> the
>>>>>>> assembly? If you have a large number of very short contigs, you will
>>>>>>>  get
>>>>>>> very inflated gene counts because you get genes split across contigs
>>>>>>>  and
>>>>>>> many contigs tend t be subtle rearrangements of other contigs just
> assembled in a slightly different way (so you can get bits and
> pieces
>>>>>>>  of
>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>  confounding
>>>>>>> factor if using the est2genome predictor with short ESTs.  I would
> recommend running CEGMA to get an estimate for the genome
>>>>>>>  completeness
>>>>>>> as
>>>>>>>  well as get an estimate of fragmentation as one of the statistics
>>>>>>> produced
>>>>>>>  is a percent of genes that are found complete (end to end) vs
> those
>>>>>>>  that
>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to be
> shorter
>>>>>>>  and less intron rich than other genes in the genome, so if CEGMA
> gives
>>>>>>>  a
>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>  pattern
>>>>>>> can be expected to be even more exaggerated for other genes in the
> genome.
>>>>>>>  If your genome is highly fragmented or proteins do not align well
> then
>>>>>>> there are other strategies.  For example, some vertebrate genomes
> end
>>>>>>>  up
>>>>>>> having extremely fragmented assemblies (on the order of 100,000
> contigs),
>>>>>>>  and if they are distantly related to other annotated species few
>>>>>>> proteins
>>>>>>>  may align to the contigs because the introns in the alignments
> tend
>>>>>>>  to
>>>>>>> be
>>>>>>>  so long and exons so short that it pushes down the significance
> scores
>>>>>>> too
>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
> only
>>>>>>>  way
>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Dear Carson and Daniel,
>>>>>>> Thanks. I ran sample file for filtering genes based on AED score.
> The
>>>>>>> input gff3 file was provided to option model_pred(see attached file
> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>  least
>>>>>>>  5
>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>  predicted
>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>> attached
>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>> just
>>>>>>> want
>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>> maker.
>>>>>>> On
>>>>>>>  the other hand, if you are trying to build a dataset for
> training
>>>>>>>  gene
>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>  dataset
>>>>>>> for
>>>>>>>  SNAP training.  There are a number of filters available. Just
> call
>>>>>>>  the
>>>>>>> script once without parameters to see the options.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>> wrote:
>>>>>>> Hi Parul,
>>>>>>> I think the way you described (with the maker_opts.ctl file) is
> how
>>>>>>> you
>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>> Daniel
>>>>>>> Daniel Ence
>>>>>>> Graduate Student
>>>>>>> Eccles Institute of Human Genetics
>>>>>>> University of Utah
>>>>>>> 15 North 2030 East, Room 2100
>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>> ________________________________________
>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>  Kudtarkar
>>>>>>> [parulk at caltech.edu]
>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>> To: Parul Kudtarkar
>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>> Also, are there any other parameters that are required when
> filtering
>>>>>>> based on AED score?
>>>>>>>  Hello Carson,
>>>>>>>  Just to confirm, Is there a script that would filter gene
> models
>>>>>>> at
>>>>>>> specific AED score.
>>>>>>>  Alternatively if I were to do this within maker with regards
> to
>>>>>>> parameters
>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>> genes
>>>>>>> gff3
>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>> Thanks and regards,
>>>>>>>  Parul Kudtarkar
>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
> 1
>>>>>>>  is
>>>>>>> worst
>>>>>>>  as
>>>>>>>  it is a distance metric.  You can use the AED_threshold
> parameter
>>>>>>> to
>>>>>>>  require better matching to the evidence by setting it closer
> to
>>>>>>> 0.
>>>>>>> You
>>>>>>>  can
>>>>>>>  also try to increase protein homology evidence as some of
> your
>>>>>>> calls
>>>>>>> may
>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>  --Carson
>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>> wrote:
>>>>>>> Dear Maker community,
>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>  based
>>>>>>> prediction, I use this data-set to train SNAP as well as Augustus
> predictions, followed by boot-strapping. I would typically expect
> 20-30K
>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>  indicating
>>>>>>>  too
>>>>>>> many false positives. Is there a way to further refine these
>>>>>>> predication/script to retain predictions with AED score 1 and if yes
>>>>>>> how
>>>>>>> to go about this?
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
> -l
>>>>>>> ab
>>>>>>> .o
>>>>>>> rg
>>>>>>>  --
>>>>>>>  Scientific Programmer
>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>  Beckman Institute,
>>>>>>>  California Institute of Technology
>>>>>>>  http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>> or
>>>>>>> g
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>> or
>>>>>>> g
>>>>>>>  _______________________________________________
>>>>>>>  maker-devel mailing list
>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
> .o
>>>>>>> rg
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
> 
> 
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
> 
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
> 
> 
> 


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From parulk at caltech.edu  Fri Dec  7 15:06:26 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Fri, 7 Dec 2012 14:06:26 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCE77941.16E3D%carsonhh@gmail.com>
References: <CCE77941.16E3D%carsonhh@gmail.com>
Message-ID: <2974.131.215.15.234.1354917986.squirrel@webmail.caltech.edu>

Dear Carson,

Thanks for detailed explanation and help. Now we know the exact parameters
that should help us with generating good gene-model.

The genome for which we are working on gene predictions is
Echinoderm(sea-urchin). lamprey was the closest organism for training
augustus that I could find. A quick question for training augustus, there
is augustus_species option how would you go from training data generated
by zff2augustus_gbk.pl > train.gb as specified here
http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
generating the species folder that can be specified to augustus_species
option.

The average expected gene-length in our case is ~15kb.
We also have a good repeat library for our genome.

Thanks and regards,
Parul Kudtarkar

> For step 2 and 3, use lamprey rather than human in augustus.  For some
> reason the current version of augustus doesn't diplay it as an option for
> the species help menu (so I didn't see it), but it's there in
> ?/augustus/config/species/lamprey
>
> For any additional training, make copies into
> ?/augustus/config/species/lamprey2 and ?/augustus/config/species/lamprey3
>
> Thanks,
> Carson
>
>
>
> From:  Carson Holt <carsonhh at gmail.com>
> Date:  Friday, 7 December, 2012 10:22 AM
> To:  Daniel Ence <dence at genetics.utah.edu>, "maker-devel at yandell-lab.org"
> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
> Subject:  Re: [maker-devel] AED score
>
> Just to add to Daniels comments.
>
> Things to change in step 1:
>> protein= <just try and add more protein evidence in general>
>> est2genome=0
>> protein2genome=1
>> split_hit=20000
>> min_contig=50000
>
> Reasoning:
>> Your ESTs are very short especially if this is a lamprey species which
>> have
>> very long introns and really short exons.  In lamprey (i.e. Petromyzon
>> marinus), genes tend to be very long (remember gene lengths include
>> introns
>> and UTR and is not just the size of the coding sequence), so contigs
>> shorter
>> than 50kb are useless for training as you are unlikely to get nice
>> complete
>> gene models on those.  Also lampreys have very long introns, so you have
>> to
>> allow for bigger introns in alignments (split_hit parameter).  Finally
>> add as
>> much protein evidence from as many sources as possible.  Your maker
>> training
>> run will take a long time as proteins take forever to align, but because
>> of
>> the evolutionary distance of lamprey from everything else and the short
>> exon
>> structure of its genome, very little aligns directly to its genome from
>> other
>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>> species
>> because of what you said about the  augustus species file you are using.
>> Really the only thing closely related to lampreys unfortunately are
>> other
>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>> lamprey
>> (while they branch closely together on the tree of life, there are too
>> many
>> years since the last common ancestor).  So while they may have similar
>> issues
>> related to annotation (long introns and short exons etc.) they will not
>> really
>> match that well for the gene predictor or even protein alignments.
>
> Additional note:
>> I have training files for the lamprey species Petromyzon marinus for
>> both
>> Augustus and SNAP that I could share with you in a few week, when the
>> genome
>> publication is is released.  But before that happens, new gene models
>> will be
>> available  through the UCSC browser (hopefully within a couple of
>> weeks), and
>> gene models are already available through ENSEMBL.  Get those protein
>> files
>> for training, it may be a big help for you.  If you want early access to
>> the
>> lamprey training files for Augustus and SNAP, you would have to request
>> it
>> from Weiming Li at Michigan State University (the head of that genome
>> project).
>>
>
>
> Things to change in step 2:
>> Optimally you would be doing de novo training using mRNAseq results, but
>> with
>> on;ly sparse protein alignments and such a fragmented assembly, you are
>> probably better off just trying to adapt the human HMM files.  They
>> won't
>> match that well, but you probably won't have the evidence for De Novo
>> training.  First make a copy of the augustus human species directory and
>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>> ?/augustus/config/species/lamprey).  Use it as the base species for
>> retraining
>> augustus using your new models.  You will have to edit multiple files in
>> the
>> directory after you copy it so that they no longer say human or homo
>> sapiens
>> internally or in the file name.  Use maker2zff to generate the filtered
>> ZFF
>> file for training SNAP, but don't train SNAP.  Rather use the training
>> file to
>> better train Augustus info here (just ignore the CEGMA part) -->
>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>
>> MAKE a backup of the step 1 maker output directory and run step 2 in the
>> old
>> step 1 directory (this allows you to change the parameters and reuse
>> files
>> form step 1 so you don't have to recalculate all the protein and EST
>> alignments).  So control files for step 2 are identical to step 1 except
>> for
>> these parameters.
>>
>> protein2genome=0
>> augustus_species=lamprey
>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>
>> Don't both training SNAP here as you probably won't have enough data and
>> you
>> assembly is too fragmented for it to work well, so just stick to
>> augustus.
>> Try SNAP if you want just to see how well it works.  Manually open up
>> the
>> largest contigs in a viewer to look at the models produced from the
>> MAKER run
>> to see if they look reasonable (this will also help you decide whether
>> to keep
>> SNAP).
>>
>
> Things to change in step 3:
>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>> make
>> copies of ?/augustus/config/species/lamprey and save it to
>> ?/augustus/config/species/lamprey2 (editing all the files and names as
>> you did
>> in step 2). This way you don't loose that training data if you decide to
>> step
>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>
>> augustus_species=lamprey2
>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>
>> Make a backup of Step 2 and run step 3 in the old Step 2 directory (This
>> is
>> for file reuse, so the step will run fast).  This must be the exact same
>> step
>> directory as step 2 for the reuse trick to work.
>>
>> Manually review the models and if you are satisfied move to step 4.
>> Also note
>> that most parameters including the protein, EST, and repeats should not
>> change
>> from step1-step3, and should not be removed for step 4 either, you can
>> add
>> more evidence, but don't remove evidence (like the repeats).
>>
>>
> Things to change in step 4:
>> For this step, just set min_contig=10000 and rerun MAKER inside the step
>> 3
>> directory to get the smaller contigs annotated.  This should be your
>> final
>> step, although you can try altering other parameters or adding more
>> evidence
>> sources here etc.
>>
>>
> For other things to keep in mind, you should consider taking extra time to
> build a comprehensive library of repeats for your species, I know that
> Petromyzon marinus was virtually unannotatable until we had a very deep
> repeat library built for it.  Any repeat library should be used in all
> steps.  Also for lamprey, you will expect between 20,000-30,000 genes both
> because of your assemblies fragmentation and because of some ancestral
> genome duplication.  Also be aware that lampreys appear to undergo
> programmed genome loss in somatic tissues, so any gene count you get is
> only
> going to represent a maximum of 75-80% of all genes unless the assembly is
> derived from germline tissue.
>
> Thanks,
> Carson
>
>
>>
> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>
>> Hi Parul,
>>
>> In step one, if protein2genome isn't turned on, then the protein
>> alignments
>> wont be used to generate gene models. Carson said before to use
>> protein2genome
>> to generate gene models for your trainings set, but you should know that
>> those
>> data aren't being used right now.
>>
>> In step 2, you can include the est and protein evidence that you used in
>> step
>> one, and the ab-initio predictors will takes those data as hints to
>> guide
>> their predictions. Also, are you reannotating human here? I'm just
>> wondering
>> why the snap file is called Pult, but the augustus species model is
>> human.
>> Also, I think you should include the same masking files from step 1,
>> otherwise
>> the ab-initio predictors will be predicting on the unmasked sequence
>> which
>> will give you many spurious predictions.
>>
>> In step 3, I'm not certain what you mean by boot-strapping. The control
>> file
>> you sent for step 3 will just pass-through all of the data from before.
>>
>> In step 4, I think what you'll get is pretty close to what you already
>> had in
>> step 3. The gene models from step 3 are already based on the est and
>> protein
>> data from step 1, so without giving any different evidence or ab-initio
>> predictors, I think that you will just get the same gene models that you
>> got
>> from step 3. Those gene models are what you should be using to train
>> snap.
>> Also, is this the same genome as in the other steps? The genome file
>> here is
>> called genome.linear.fa, but before it was called genome.fa.
>>
>> Step 5. So maker uses both evidence and ab-initio predictions to create
>> models. If you don't give any evidence (EST or protein) maker will not
>> annotate any gene models. You have also changed the augustus species
>> model in
>> this step, but I don't know what you've gained by going from one species
>> to
>> another. You should be training augustus with the gene models and then
>> creating a new species model in augustus. As I understand it, the filter
>> only
>> operates on gene models, not ab-initio predictions or alignments, so it
>> probably isn't doing anything the way you have it set.
>>
>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>> mean by
>> boot-strapping here too.
>>
>> Hopefully that clears up some of the confusion with how maker works.
>> Carson
>> will probably have a lot of suggestions too.
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: Parul Kudtarkar [parulk at caltech.edu]
>> Sent: Thursday, December 06, 2012 10:08 AM
>> To: carsonhh at gmail.com
>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>> Subject: Re: [maker-devel] AED score
>>
>> Hi Carson,
>>
>> Once again thanks for a quick response. We expect to get 25,000 to
>> 30,000
>> genes.
>> Here are the step
>> Step1. EST and proteins are used to predict gene-models. the resulting
>> file is used as training data-set for SNAP in step2. est2genome is
>> turned
>> ON
>> Step2. Augustus and SNAP is used to predict genes.
>> Step3. The results are re-annoated(boot-strap)
>> Step4. EST and proteins are used to predict gene-models. The gff file
>> from
>> step3. is used as model_gff. The resulting file is used as training
>> data-set for SNAP in step2
>> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>> contig_size to 10kb
>>
>> Thanks and regards,
>> Parul Kudtarkar
>>
>> I have attached the configuration file for each step.
>>>  Your output has no genes.  They've all been filtered out.  The gene
>> predictions are left for reference purposes, but there are no gene
>> models
>>>  in the file.  You need to look at the type columns in the GFF3 file
>>> -->
>> match/match_part features are evidence and reference data but not
>> models.
>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>> just
>> want gene models in your file you can use the gff3_merge script with the
>> -g option, and it will only print out the gene models.
>>>  I think you may be misinterpreting what is happening at different
>>> steps,
>> as well as how to read the result files.  Could you give me a detailed
>> explanation of what you expect to get back together with your control
>> files and I can walk you through the configuration, and indicate what to
>> expect.  Also what was the report like from CEGMA. Could you include the
>> report file that shows how complete your genome is and how fragmented it
>> is?
>>>  Thanks,
>>>  Carson
>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>> Dear Carson,
>>>> Thanks for a quick response. keep_preds is set to 0
>>>> Though for previous step(ab-intio gene predictions keep_preds was set
>>>> to
>> 1, see Scaffold1_input.gff). I have also attached the output file
>> Scaffold1_out.gff.
>>>> Please advice.
>>>> Thanks and regards,
>>>> Parul Kudtarkar
>>>>>  You should always get all predictions, but should only get models
>> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>> keep_preds set.
>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>> your
>> threshold (not match/match_part features)?  If the first one is the
>>>>> case,
>>>>>  just set it to 0.  If the second one in the case, could you send me
>> example GFF3?
>>>>>  Thanks,
>>>>>  Carson
>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>> Dear Carson,
>>>>>> Thanks once again, we have limited experimental data with very short
>>>>>>  ESTs.
>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>> prediction(used as training dataset)and abinitio gene-prediction).
>> Here
>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>  however
>>>>>>  I
>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>  resulting
>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>  initial
>>>>>> gff3 file.
>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>  eukaryotic
>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>> file
>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0
>>>>>> =
>> no
>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 =
>>>>>> no
>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>  no
>>>>>> #-----MAKER Behavior Options
>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound
>>>>>> by
>> 0
>>>>>> and 1)
>>>>>> Thanks and regards,
>>>>>> Parul Kudtarkar
>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>> partial
>>>>>>> at
>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>> those
>> by
>>>>>>>  using maker's est_gff option to pass in results from cufflinks or
>>>>>>> trinity.
>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
>> size,
>>>>>>> just
>>>>>>>  have maker skip them by setting the min_contig filter in the
>> maker_opts.ctl file.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611 with
>> N50
>>>>>>>>  of
>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>> reason
>>>>>>>>  when
>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>> predicted
>> despite the model_gff file has few genes with scores less than 0.75?
>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>  There are certain characteristics that are apparent in this
>> contig.
>>>>>>>> First
>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>> also
>>>>>>>> have
>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>> getting
>> many
>>>>>>>>  of them to align spuriously which produces very short gene models
>> that
>>>>>>>> are
>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>> piece
>>>>>>>> of
>>>>>>>> a
>>>>>>>> gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>>  unless
>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>  protein
>>>>>>>> alignments also seem to be few and far between.  You probably need
>> to
>>>>>>>> add
>>>>>>>>  more proteins from a couple of related species, and you might
>> consider
>>>>>>>> using protein2genome rather than est2genome as a predictor if you
>> are
>>>>>>>> still working to generate a training set. Also est2genome produced
>> models
>>>>>>>>  almost always have an AED score near 0 so mixing est2genome with
>> the
>>>>>>>> AED_threshold with such limited protein support does create an
>> artificial
>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>  How many contigs do you have in total and what is the N50 value
>> for
>>>>>>>> the
>>>>>>>> assembly? If you have a large number of very short contigs, you
>>>>>>>> will
>>>>>>>>  get
>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>> contigs
>>>>>>>>  and
>>>>>>>> many contigs tend t be subtle rearrangements of other contigs just
>> assembled in a slightly different way (so you can get bits and
>> pieces
>>>>>>>>  of
>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>  confounding
>>>>>>>> factor if using the est2genome predictor with short ESTs.  I would
>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>  completeness
>>>>>>>> as
>>>>>>>>  well as get an estimate of fragmentation as one of the statistics
>>>>>>>> produced
>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>> those
>>>>>>>>  that
>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to be
>> shorter
>>>>>>>>  and less intron rich than other genes in the genome, so if CEGMA
>> gives
>>>>>>>>  a
>>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>>  pattern
>>>>>>>> can be expected to be even more exaggerated for other genes in the
>> genome.
>>>>>>>>  If your genome is highly fragmented or proteins do not align well
>> then
>>>>>>>> there are other strategies.  For example, some vertebrate genomes
>> end
>>>>>>>>  up
>>>>>>>> having extremely fragmented assemblies (on the order of 100,000
>> contigs),
>>>>>>>>  and if they are distantly related to other annotated species few
>>>>>>>> proteins
>>>>>>>>  may align to the contigs because the introns in the alignments
>> tend
>>>>>>>>  to
>>>>>>>> be
>>>>>>>>  so long and exons so short that it pushes down the significance
>> scores
>>>>>>>> too
>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
>> only
>>>>>>>>  way
>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>> Dear Carson and Daniel,
>>>>>>>> Thanks. I ran sample file for filtering genes based on AED score.
>> The
>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>> file
>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>  least
>>>>>>>>  5
>>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>>  predicted
>>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>>> attached
>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>> just
>>>>>>>> want
>>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>>> maker.
>>>>>>>> On
>>>>>>>>  the other hand, if you are trying to build a dataset for
>> training
>>>>>>>>  gene
>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>  dataset
>>>>>>>> for
>>>>>>>>  SNAP training.  There are a number of filters available. Just
>> call
>>>>>>>>  the
>>>>>>>> script once without parameters to see the options.
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>> wrote:
>>>>>>>> Hi Parul,
>>>>>>>> I think the way you described (with the maker_opts.ctl file) is
>> how
>>>>>>>> you
>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>> Daniel
>>>>>>>> Daniel Ence
>>>>>>>> Graduate Student
>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>> University of Utah
>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>> ________________________________________
>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>  Kudtarkar
>>>>>>>> [parulk at caltech.edu]
>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>> To: Parul Kudtarkar
>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>> Also, are there any other parameters that are required when
>> filtering
>>>>>>>> based on AED score?
>>>>>>>>  Hello Carson,
>>>>>>>>  Just to confirm, Is there a script that would filter gene
>> models
>>>>>>>> at
>>>>>>>> specific AED score.
>>>>>>>>  Alternatively if I were to do this within maker with regards
>> to
>>>>>>>> parameters
>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>> genes
>>>>>>>> gff3
>>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>> Thanks and regards,
>>>>>>>>  Parul Kudtarkar
>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>> 1
>>>>>>>>  is
>>>>>>>> worst
>>>>>>>>  as
>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>> parameter
>>>>>>>> to
>>>>>>>>  require better matching to the evidence by setting it closer
>> to
>>>>>>>> 0.
>>>>>>>> You
>>>>>>>>  can
>>>>>>>>  also try to increase protein homology evidence as some of
>> your
>>>>>>>> calls
>>>>>>>> may
>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>  --Carson
>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>> Dear Maker community,
>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>  based
>>>>>>>> prediction, I use this data-set to train SNAP as well as Augustus
>> predictions, followed by boot-strapping. I would typically expect
>> 20-30K
>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>  indicating
>>>>>>>>  too
>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>> predication/script to retain predictions with AED score 1 and if
>>>>>>>> yes
>>>>>>>> how
>>>>>>>> to go about this?
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>> _______________________________________________
>>>>>>>> maker-devel mailing list
>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>> -l
>>>>>>>> ab
>>>>>>>> .o
>>>>>>>> rg
>>>>>>>>  --
>>>>>>>>  Scientific Programmer
>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>  Beckman Institute,
>>>>>>>>  California Institute of Technology
>>>>>>>>  http://www.spbase.org
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>> _______________________________________________
>>>>>>>> maker-devel mailing list
>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>> b.
>>>>>>>> or
>>>>>>>> g
>>>>>>>> _______________________________________________
>>>>>>>> maker-devel mailing list
>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>> b.
>>>>>>>> or
>>>>>>>> g
>>>>>>>>  _______________________________________________
>>>>>>>>  maker-devel mailing list
>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>> .o
>>>>>>>> rg
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>> --
>>>> Scientific Programmer
>>>> Center for Computational Regulatory Genomics
>>>> Beckman Institute,
>>>> California Institute of Technology
>>>> http://www.spbase.org
>>
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>>
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From parulk at caltech.edu  Fri Dec  7 18:09:53 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Fri, 7 Dec 2012 17:09:53 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <2974.131.215.15.234.1354917989.squirrel@webmail.caltech.edu>
References: <CCE77941.16E3D%carsonhh@gmail.com>
	<2974.131.215.15.234.1354917989.squirrel@webmail.caltech.edu>
Message-ID: <2516.131.215.15.234.1354928993.squirrel@webmail.caltech.edu>

Sorry for not checking this before, just to answer my own question I just
found after reading augustus documentation that autoAugTrain.pl should
work for generating training dataset for Augustus from using the
gene-model hints from first pass run of maker and using
http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script to
generate training.gb

autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb

I believe should work better than using lamprey to train augustus.

Thanks and regards,
Parul Kudtarkar

> Dear Carson,
>
> Thanks for detailed explanation and help. Now we know the exact parameters
> that should help us with generating good gene-model.
>
> The genome for which we are working on gene predictions is
> Echinoderm(sea-urchin). lamprey was the closest organism for training
> augustus that I could find. A quick question for training augustus, there
> is augustus_species option how would you go from training data generated
> by zff2augustus_gbk.pl > train.gb as specified here
> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
> generating the species folder that can be specified to augustus_species
> option.
>
> The average expected gene-length in our case is ~15kb.
> We also have a good repeat library for our genome.
>
> Thanks and regards,
> Parul Kudtarkar
>
>> For step 2 and 3, use lamprey rather than human in augustus.  For some
>> reason the current version of augustus doesn't diplay it as an option
>> for
>> the species help menu (so I didn't see it), but it's there in
>> ?/augustus/config/species/lamprey
>>
>> For any additional training, make copies into
>> ?/augustus/config/species/lamprey2 and
>> ?/augustus/config/species/lamprey3
>>
>> Thanks,
>> Carson
>>
>>
>>
>> From:  Carson Holt <carsonhh at gmail.com>
>> Date:  Friday, 7 December, 2012 10:22 AM
>> To:  Daniel Ence <dence at genetics.utah.edu>,
>> "maker-devel at yandell-lab.org"
>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>> Subject:  Re: [maker-devel] AED score
>>
>> Just to add to Daniels comments.
>>
>> Things to change in step 1:
>>> protein= <just try and add more protein evidence in general>
>>> est2genome=0
>>> protein2genome=1
>>> split_hit=20000
>>> min_contig=50000
>>
>> Reasoning:
>>> Your ESTs are very short especially if this is a lamprey species which
>>> have
>>> very long introns and really short exons.  In lamprey (i.e. Petromyzon
>>> marinus), genes tend to be very long (remember gene lengths include
>>> introns
>>> and UTR and is not just the size of the coding sequence), so contigs
>>> shorter
>>> than 50kb are useless for training as you are unlikely to get nice
>>> complete
>>> gene models on those.  Also lampreys have very long introns, so you
>>> have
>>> to
>>> allow for bigger introns in alignments (split_hit parameter).  Finally
>>> add as
>>> much protein evidence from as many sources as possible.  Your maker
>>> training
>>> run will take a long time as proteins take forever to align, but
>>> because
>>> of
>>> the evolutionary distance of lamprey from everything else and the short
>>> exon
>>> structure of its genome, very little aligns directly to its genome from
>>> other
>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>> species
>>> because of what you said about the  augustus species file you are
>>> using.
>>> Really the only thing closely related to lampreys unfortunately are
>>> other
>>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>>> lamprey
>>> (while they branch closely together on the tree of life, there are too
>>> many
>>> years since the last common ancestor).  So while they may have similar
>>> issues
>>> related to annotation (long introns and short exons etc.) they will not
>>> really
>>> match that well for the gene predictor or even protein alignments.
>>
>> Additional note:
>>> I have training files for the lamprey species Petromyzon marinus for
>>> both
>>> Augustus and SNAP that I could share with you in a few week, when the
>>> genome
>>> publication is is released.  But before that happens, new gene models
>>> will be
>>> available  through the UCSC browser (hopefully within a couple of
>>> weeks), and
>>> gene models are already available through ENSEMBL.  Get those protein
>>> files
>>> for training, it may be a big help for you.  If you want early access
>>> to
>>> the
>>> lamprey training files for Augustus and SNAP, you would have to request
>>> it
>>> from Weiming Li at Michigan State University (the head of that genome
>>> project).
>>>
>>
>>
>> Things to change in step 2:
>>> Optimally you would be doing de novo training using mRNAseq results,
>>> but
>>> with
>>> on;ly sparse protein alignments and such a fragmented assembly, you are
>>> probably better off just trying to adapt the human HMM files.  They
>>> won't
>>> match that well, but you probably won't have the evidence for De Novo
>>> training.  First make a copy of the augustus human species directory
>>> and
>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>> retraining
>>> augustus using your new models.  You will have to edit multiple files
>>> in
>>> the
>>> directory after you copy it so that they no longer say human or homo
>>> sapiens
>>> internally or in the file name.  Use maker2zff to generate the filtered
>>> ZFF
>>> file for training SNAP, but don't train SNAP.  Rather use the training
>>> file to
>>> better train Augustus info here (just ignore the CEGMA part) -->
>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>
>>> MAKE a backup of the step 1 maker output directory and run step 2 in
>>> the
>>> old
>>> step 1 directory (this allows you to change the parameters and reuse
>>> files
>>> form step 1 so you don't have to recalculate all the protein and EST
>>> alignments).  So control files for step 2 are identical to step 1
>>> except
>>> for
>>> these parameters.
>>>
>>> protein2genome=0
>>> augustus_species=lamprey
>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>
>>> Don't both training SNAP here as you probably won't have enough data
>>> and
>>> you
>>> assembly is too fragmented for it to work well, so just stick to
>>> augustus.
>>> Try SNAP if you want just to see how well it works.  Manually open up
>>> the
>>> largest contigs in a viewer to look at the models produced from the
>>> MAKER run
>>> to see if they look reasonable (this will also help you decide whether
>>> to keep
>>> SNAP).
>>>
>>
>> Things to change in step 3:
>>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>>> make
>>> copies of ?/augustus/config/species/lamprey and save it to
>>> ?/augustus/config/species/lamprey2 (editing all the files and names as
>>> you did
>>> in step 2). This way you don't loose that training data if you decide
>>> to
>>> step
>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>
>>> augustus_species=lamprey2
>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>
>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>> (This
>>> is
>>> for file reuse, so the step will run fast).  This must be the exact
>>> same
>>> step
>>> directory as step 2 for the reuse trick to work.
>>>
>>> Manually review the models and if you are satisfied move to step 4.
>>> Also note
>>> that most parameters including the protein, EST, and repeats should not
>>> change
>>> from step1-step3, and should not be removed for step 4 either, you can
>>> add
>>> more evidence, but don't remove evidence (like the repeats).
>>>
>>>
>> Things to change in step 4:
>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>> step
>>> 3
>>> directory to get the smaller contigs annotated.  This should be your
>>> final
>>> step, although you can try altering other parameters or adding more
>>> evidence
>>> sources here etc.
>>>
>>>
>> For other things to keep in mind, you should consider taking extra time
>> to
>> build a comprehensive library of repeats for your species, I know that
>> Petromyzon marinus was virtually unannotatable until we had a very deep
>> repeat library built for it.  Any repeat library should be used in all
>> steps.  Also for lamprey, you will expect between 20,000-30,000 genes
>> both
>> because of your assemblies fragmentation and because of some ancestral
>> genome duplication.  Also be aware that lampreys appear to undergo
>> programmed genome loss in somatic tissues, so any gene count you get is
>> only
>> going to represent a maximum of 75-80% of all genes unless the assembly
>> is
>> derived from germline tissue.
>>
>> Thanks,
>> Carson
>>
>>
>>>
>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>
>>> Hi Parul,
>>>
>>> In step one, if protein2genome isn't turned on, then the protein
>>> alignments
>>> wont be used to generate gene models. Carson said before to use
>>> protein2genome
>>> to generate gene models for your trainings set, but you should know
>>> that
>>> those
>>> data aren't being used right now.
>>>
>>> In step 2, you can include the est and protein evidence that you used
>>> in
>>> step
>>> one, and the ab-initio predictors will takes those data as hints to
>>> guide
>>> their predictions. Also, are you reannotating human here? I'm just
>>> wondering
>>> why the snap file is called Pult, but the augustus species model is
>>> human.
>>> Also, I think you should include the same masking files from step 1,
>>> otherwise
>>> the ab-initio predictors will be predicting on the unmasked sequence
>>> which
>>> will give you many spurious predictions.
>>>
>>> In step 3, I'm not certain what you mean by boot-strapping. The control
>>> file
>>> you sent for step 3 will just pass-through all of the data from before.
>>>
>>> In step 4, I think what you'll get is pretty close to what you already
>>> had in
>>> step 3. The gene models from step 3 are already based on the est and
>>> protein
>>> data from step 1, so without giving any different evidence or ab-initio
>>> predictors, I think that you will just get the same gene models that
>>> you
>>> got
>>> from step 3. Those gene models are what you should be using to train
>>> snap.
>>> Also, is this the same genome as in the other steps? The genome file
>>> here is
>>> called genome.linear.fa, but before it was called genome.fa.
>>>
>>> Step 5. So maker uses both evidence and ab-initio predictions to create
>>> models. If you don't give any evidence (EST or protein) maker will not
>>> annotate any gene models. You have also changed the augustus species
>>> model in
>>> this step, but I don't know what you've gained by going from one
>>> species
>>> to
>>> another. You should be training augustus with the gene models and then
>>> creating a new species model in augustus. As I understand it, the
>>> filter
>>> only
>>> operates on gene models, not ab-initio predictions or alignments, so it
>>> probably isn't doing anything the way you have it set.
>>>
>>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>>> mean by
>>> boot-strapping here too.
>>>
>>> Hopefully that clears up some of the confusion with how maker works.
>>> Carson
>>> will probably have a lot of suggestions too.
>>>
>>> Thanks,
>>> Daniel
>>>
>>> Daniel Ence
>>> Graduate Student
>>> Eccles Institute of Human Genetics
>>> University of Utah
>>> 15 North 2030 East, Room 2100
>>> Salt Lake City, UT 84112-5330
>>> ________________________________________
>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>> Sent: Thursday, December 06, 2012 10:08 AM
>>> To: carsonhh at gmail.com
>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>> Subject: Re: [maker-devel] AED score
>>>
>>> Hi Carson,
>>>
>>> Once again thanks for a quick response. We expect to get 25,000 to
>>> 30,000
>>> genes.
>>> Here are the step
>>> Step1. EST and proteins are used to predict gene-models. the resulting
>>> file is used as training data-set for SNAP in step2. est2genome is
>>> turned
>>> ON
>>> Step2. Augustus and SNAP is used to predict genes.
>>> Step3. The results are re-annoated(boot-strap)
>>> Step4. EST and proteins are used to predict gene-models. The gff file
>>> from
>>> step3. is used as model_gff. The resulting file is used as training
>>> data-set for SNAP in step2
>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>>> contig_size to 10kb
>>>
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>
>>> I have attached the configuration file for each step.
>>>>  Your output has no genes.  They've all been filtered out.  The gene
>>> predictions are left for reference purposes, but there are no gene
>>> models
>>>>  in the file.  You need to look at the type columns in the GFF3 file
>>>> -->
>>> match/match_part features are evidence and reference data but not
>>> models.
>>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>>> just
>>> want gene models in your file you can use the gff3_merge script with
>>> the
>>> -g option, and it will only print out the gene models.
>>>>  I think you may be misinterpreting what is happening at different
>>>> steps,
>>> as well as how to read the result files.  Could you give me a detailed
>>> explanation of what you expect to get back together with your control
>>> files and I can walk you through the configuration, and indicate what
>>> to
>>> expect.  Also what was the report like from CEGMA. Could you include
>>> the
>>> report file that shows how complete your genome is and how fragmented
>>> it
>>> is?
>>>>  Thanks,
>>>>  Carson
>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>> Dear Carson,
>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>> Though for previous step(ab-intio gene predictions keep_preds was set
>>>>> to
>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>> Scaffold1_out.gff.
>>>>> Please advice.
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>>  You should always get all predictions, but should only get models
>>> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>> keep_preds set.
>>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>>> your
>>> threshold (not match/match_part features)?  If the first one is the
>>>>>> case,
>>>>>>  just set it to 0.  If the second one in the case, could you send me
>>> example GFF3?
>>>>>>  Thanks,
>>>>>>  Carson
>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Dear Carson,
>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>> short
>>>>>>>  ESTs.
>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>> prediction(used as training dataset)and abinitio gene-prediction).
>>> Here
>>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>>  however
>>>>>>>  I
>>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>>  resulting
>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>>  initial
>>>>>>> gff3 file.
>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>  eukaryotic
>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>> file
>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes,
>>>>>>> 0
>>>>>>> =
>>> no
>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 =
>>>>>>> no
>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>>  no
>>>>>>> #-----MAKER Behavior Options
>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound
>>>>>>> by
>>> 0
>>>>>>> and 1)
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>> partial
>>>>>>>> at
>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>> those
>>> by
>>>>>>>>  using maker's est_gff option to pass in results from cufflinks or
>>>>>>>> trinity.
>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
>>> size,
>>>>>>>> just
>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>> maker_opts.ctl file.
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611 with
>>> N50
>>>>>>>>>  of
>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>> reason
>>>>>>>>>  when
>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>> predicted
>>> despite the model_gff file has few genes with scores less than 0.75?
>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>  There are certain characteristics that are apparent in this
>>> contig.
>>>>>>>>> First
>>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>>> also
>>>>>>>>> have
>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>> getting
>>> many
>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>> models
>>> that
>>>>>>>>> are
>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>> piece
>>>>>>>>> of
>>>>>>>>> a
>>>>>>>>> gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>>>  unless
>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>>  protein
>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>> need
>>> to
>>>>>>>>> add
>>>>>>>>>  more proteins from a couple of related species, and you might
>>> consider
>>>>>>>>> using protein2genome rather than est2genome as a predictor if you
>>> are
>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>> produced
>>> models
>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome with
>>> the
>>>>>>>>> AED_threshold with such limited protein support does create an
>>> artificial
>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>  How many contigs do you have in total and what is the N50 value
>>> for
>>>>>>>>> the
>>>>>>>>> assembly? If you have a large number of very short contigs, you
>>>>>>>>> will
>>>>>>>>>  get
>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>> contigs
>>>>>>>>>  and
>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>> just
>>> assembled in a slightly different way (so you can get bits and
>>> pieces
>>>>>>>>>  of
>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>  confounding
>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>> would
>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>  completeness
>>>>>>>>> as
>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>> statistics
>>>>>>>>> produced
>>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>>> those
>>>>>>>>>  that
>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to
>>>>>>>>> be
>>> shorter
>>>>>>>>>  and less intron rich than other genes in the genome, so if CEGMA
>>> gives
>>>>>>>>>  a
>>>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>>>  pattern
>>>>>>>>> can be expected to be even more exaggerated for other genes in
>>>>>>>>> the
>>> genome.
>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>> well
>>> then
>>>>>>>>> there are other strategies.  For example, some vertebrate genomes
>>> end
>>>>>>>>>  up
>>>>>>>>> having extremely fragmented assemblies (on the order of 100,000
>>> contigs),
>>>>>>>>>  and if they are distantly related to other annotated species few
>>>>>>>>> proteins
>>>>>>>>>  may align to the contigs because the introns in the alignments
>>> tend
>>>>>>>>>  to
>>>>>>>>> be
>>>>>>>>>  so long and exons so short that it pushes down the significance
>>> scores
>>>>>>>>> too
>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
>>> only
>>>>>>>>>  way
>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED score.
>>> The
>>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>>> file
>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>  least
>>>>>>>>>  5
>>>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>>>  predicted
>>>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>>>> attached
>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>> just
>>>>>>>>> want
>>>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>>>> maker.
>>>>>>>>> On
>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>> training
>>>>>>>>>  gene
>>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>>  dataset
>>>>>>>>> for
>>>>>>>>>  SNAP training.  There are a number of filters available. Just
>>> call
>>>>>>>>>  the
>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>> wrote:
>>>>>>>>> Hi Parul,
>>>>>>>>> I think the way you described (with the maker_opts.ctl file) is
>>> how
>>>>>>>>> you
>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>> Daniel
>>>>>>>>> Daniel Ence
>>>>>>>>> Graduate Student
>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>> University of Utah
>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>> ________________________________________
>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>  Kudtarkar
>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>> Also, are there any other parameters that are required when
>>> filtering
>>>>>>>>> based on AED score?
>>>>>>>>>  Hello Carson,
>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>> models
>>>>>>>>> at
>>>>>>>>> specific AED score.
>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>> to
>>>>>>>>> parameters
>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>> genes
>>>>>>>>> gff3
>>>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>>> Thanks and regards,
>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>> 1
>>>>>>>>>  is
>>>>>>>>> worst
>>>>>>>>>  as
>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>> parameter
>>>>>>>>> to
>>>>>>>>>  require better matching to the evidence by setting it closer
>>> to
>>>>>>>>> 0.
>>>>>>>>> You
>>>>>>>>>  can
>>>>>>>>>  also try to increase protein homology evidence as some of
>>> your
>>>>>>>>> calls
>>>>>>>>> may
>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>  --Carson
>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>> Dear Maker community,
>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>  based
>>>>>>>>> prediction, I use this data-set to train SNAP as well as Augustus
>>> predictions, followed by boot-strapping. I would typically expect
>>> 20-30K
>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>  indicating
>>>>>>>>>  too
>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>> predication/script to retain predictions with AED score 1 and if
>>>>>>>>> yes
>>>>>>>>> how
>>>>>>>>> to go about this?
>>>>>>>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>> -l
>>>>>>>>> ab
>>>>>>>>> .o
>>>>>>>>> rg
>>>>>>>>>  --
>>>>>>>>>  Scientific Programmer
>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>  Beckman Institute,
>>>>>>>>>  California Institute of Technology
>>>>>>>>>  http://www.spbase.org
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>>> b.
>>>>>>>>> or
>>>>>>>>> g
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>>> b.
>>>>>>>>> or
>>>>>>>>> g
>>>>>>>>>  _______________________________________________
>>>>>>>>>  maker-devel mailing list
>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>>> .o
>>>>>>>>> rg
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>>
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>>
>>>
>>
>>
>>
>
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From carsonhh at gmail.com  Fri Dec  7 18:23:18 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 07 Dec 2012 20:23:18 -0500
Subject: [maker-devel] AED score
In-Reply-To: <2516.131.215.15.234.1354928993.squirrel@webmail.caltech.edu>
Message-ID: <CCE7FF16.16F0A%carsonhh@gmail.com>

Yes.  Lamprey is not a good match for sea urchin.  When training Augusuts
you can sometimes use other genomes as starting points and let Augustus
then modify that species to match the models you provided, which can be
better than de novo training under certain circumstances. But given sea
urchin's evolutionary distance from all the other species bundled with
augustus, its probably not a good starting point.  So protein2genome
derived models and cegma based training are probably your best options.

--Carson


On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Sorry for not checking this before, just to answer my own question I just
>found after reading augustus documentation that autoAugTrain.pl should
>work for generating training dataset for Augustus from using the
>gene-model hints from first pass run of maker and using
>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script to
>generate training.gb
>
>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>
>I believe should work better than using lamprey to train augustus.
>
>Thanks and regards,
>Parul Kudtarkar
>
>> Dear Carson,
>>
>> Thanks for detailed explanation and help. Now we know the exact
>>parameters
>> that should help us with generating good gene-model.
>>
>> The genome for which we are working on gene predictions is
>> Echinoderm(sea-urchin). lamprey was the closest organism for training
>> augustus that I could find. A quick question for training augustus,
>>there
>> is augustus_species option how would you go from training data generated
>> by zff2augustus_gbk.pl > train.gb as specified here
>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>> generating the species folder that can be specified to augustus_species
>> option.
>>
>> The average expected gene-length in our case is ~15kb.
>> We also have a good repeat library for our genome.
>>
>> Thanks and regards,
>> Parul Kudtarkar
>>
>>> For step 2 and 3, use lamprey rather than human in augustus.  For some
>>> reason the current version of augustus doesn't diplay it as an option
>>> for
>>> the species help menu (so I didn't see it), but it's there in
>>> ?/augustus/config/species/lamprey
>>>
>>> For any additional training, make copies into
>>> ?/augustus/config/species/lamprey2 and
>>> ?/augustus/config/species/lamprey3
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>
>>> From:  Carson Holt <carsonhh at gmail.com>
>>> Date:  Friday, 7 December, 2012 10:22 AM
>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>> "maker-devel at yandell-lab.org"
>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>> Subject:  Re: [maker-devel] AED score
>>>
>>> Just to add to Daniels comments.
>>>
>>> Things to change in step 1:
>>>> protein= <just try and add more protein evidence in general>
>>>> est2genome=0
>>>> protein2genome=1
>>>> split_hit=20000
>>>> min_contig=50000
>>>
>>> Reasoning:
>>>> Your ESTs are very short especially if this is a lamprey species which
>>>> have
>>>> very long introns and really short exons.  In lamprey (i.e. Petromyzon
>>>> marinus), genes tend to be very long (remember gene lengths include
>>>> introns
>>>> and UTR and is not just the size of the coding sequence), so contigs
>>>> shorter
>>>> than 50kb are useless for training as you are unlikely to get nice
>>>> complete
>>>> gene models on those.  Also lampreys have very long introns, so you
>>>> have
>>>> to
>>>> allow for bigger introns in alignments (split_hit parameter).  Finally
>>>> add as
>>>> much protein evidence from as many sources as possible.  Your maker
>>>> training
>>>> run will take a long time as proteins take forever to align, but
>>>> because
>>>> of
>>>> the evolutionary distance of lamprey from everything else and the
>>>>short
>>>> exon
>>>> structure of its genome, very little aligns directly to its genome
>>>>from
>>>> other
>>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>>> species
>>>> because of what you said about the  augustus species file you are
>>>> using.
>>>> Really the only thing closely related to lampreys unfortunately are
>>>> other
>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>>>> lamprey
>>>> (while they branch closely together on the tree of life, there are too
>>>> many
>>>> years since the last common ancestor).  So while they may have similar
>>>> issues
>>>> related to annotation (long introns and short exons etc.) they will
>>>>not
>>>> really
>>>> match that well for the gene predictor or even protein alignments.
>>>
>>> Additional note:
>>>> I have training files for the lamprey species Petromyzon marinus for
>>>> both
>>>> Augustus and SNAP that I could share with you in a few week, when the
>>>> genome
>>>> publication is is released.  But before that happens, new gene models
>>>> will be
>>>> available  through the UCSC browser (hopefully within a couple of
>>>> weeks), and
>>>> gene models are already available through ENSEMBL.  Get those protein
>>>> files
>>>> for training, it may be a big help for you.  If you want early access
>>>> to
>>>> the
>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>request
>>>> it
>>>> from Weiming Li at Michigan State University (the head of that genome
>>>> project).
>>>>
>>>
>>>
>>> Things to change in step 2:
>>>> Optimally you would be doing de novo training using mRNAseq results,
>>>> but
>>>> with
>>>> on;ly sparse protein alignments and such a fragmented assembly, you
>>>>are
>>>> probably better off just trying to adapt the human HMM files.  They
>>>> won't
>>>> match that well, but you probably won't have the evidence for De Novo
>>>> training.  First make a copy of the augustus human species directory
>>>> and
>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>>> retraining
>>>> augustus using your new models.  You will have to edit multiple files
>>>> in
>>>> the
>>>> directory after you copy it so that they no longer say human or homo
>>>> sapiens
>>>> internally or in the file name.  Use maker2zff to generate the
>>>>filtered
>>>> ZFF
>>>> file for training SNAP, but don't train SNAP.  Rather use the training
>>>> file to
>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>
>>>> MAKE a backup of the step 1 maker output directory and run step 2 in
>>>> the
>>>> old
>>>> step 1 directory (this allows you to change the parameters and reuse
>>>> files
>>>> form step 1 so you don't have to recalculate all the protein and EST
>>>> alignments).  So control files for step 2 are identical to step 1
>>>> except
>>>> for
>>>> these parameters.
>>>>
>>>> protein2genome=0
>>>> augustus_species=lamprey
>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>
>>>> Don't both training SNAP here as you probably won't have enough data
>>>> and
>>>> you
>>>> assembly is too fragmented for it to work well, so just stick to
>>>> augustus.
>>>> Try SNAP if you want just to see how well it works.  Manually open up
>>>> the
>>>> largest contigs in a viewer to look at the models produced from the
>>>> MAKER run
>>>> to see if they look reasonable (this will also help you decide whether
>>>> to keep
>>>> SNAP).
>>>>
>>>
>>> Things to change in step 3:
>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>>>> make
>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>> ?/augustus/config/species/lamprey2 (editing all the files and names as
>>>> you did
>>>> in step 2). This way you don't loose that training data if you decide
>>>> to
>>>> step
>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>
>>>> augustus_species=lamprey2
>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>
>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>> (This
>>>> is
>>>> for file reuse, so the step will run fast).  This must be the exact
>>>> same
>>>> step
>>>> directory as step 2 for the reuse trick to work.
>>>>
>>>> Manually review the models and if you are satisfied move to step 4.
>>>> Also note
>>>> that most parameters including the protein, EST, and repeats should
>>>>not
>>>> change
>>>> from step1-step3, and should not be removed for step 4 either, you can
>>>> add
>>>> more evidence, but don't remove evidence (like the repeats).
>>>>
>>>>
>>> Things to change in step 4:
>>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>>> step
>>>> 3
>>>> directory to get the smaller contigs annotated.  This should be your
>>>> final
>>>> step, although you can try altering other parameters or adding more
>>>> evidence
>>>> sources here etc.
>>>>
>>>>
>>> For other things to keep in mind, you should consider taking extra time
>>> to
>>> build a comprehensive library of repeats for your species, I know that
>>> Petromyzon marinus was virtually unannotatable until we had a very deep
>>> repeat library built for it.  Any repeat library should be used in all
>>> steps.  Also for lamprey, you will expect between 20,000-30,000 genes
>>> both
>>> because of your assemblies fragmentation and because of some ancestral
>>> genome duplication.  Also be aware that lampreys appear to undergo
>>> programmed genome loss in somatic tissues, so any gene count you get is
>>> only
>>> going to represent a maximum of 75-80% of all genes unless the assembly
>>> is
>>> derived from germline tissue.
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>>
>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>
>>>> Hi Parul,
>>>>
>>>> In step one, if protein2genome isn't turned on, then the protein
>>>> alignments
>>>> wont be used to generate gene models. Carson said before to use
>>>> protein2genome
>>>> to generate gene models for your trainings set, but you should know
>>>> that
>>>> those
>>>> data aren't being used right now.
>>>>
>>>> In step 2, you can include the est and protein evidence that you used
>>>> in
>>>> step
>>>> one, and the ab-initio predictors will takes those data as hints to
>>>> guide
>>>> their predictions. Also, are you reannotating human here? I'm just
>>>> wondering
>>>> why the snap file is called Pult, but the augustus species model is
>>>> human.
>>>> Also, I think you should include the same masking files from step 1,
>>>> otherwise
>>>> the ab-initio predictors will be predicting on the unmasked sequence
>>>> which
>>>> will give you many spurious predictions.
>>>>
>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>control
>>>> file
>>>> you sent for step 3 will just pass-through all of the data from
>>>>before.
>>>>
>>>> In step 4, I think what you'll get is pretty close to what you already
>>>> had in
>>>> step 3. The gene models from step 3 are already based on the est and
>>>> protein
>>>> data from step 1, so without giving any different evidence or
>>>>ab-initio
>>>> predictors, I think that you will just get the same gene models that
>>>> you
>>>> got
>>>> from step 3. Those gene models are what you should be using to train
>>>> snap.
>>>> Also, is this the same genome as in the other steps? The genome file
>>>> here is
>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>
>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>create
>>>> models. If you don't give any evidence (EST or protein) maker will not
>>>> annotate any gene models. You have also changed the augustus species
>>>> model in
>>>> this step, but I don't know what you've gained by going from one
>>>> species
>>>> to
>>>> another. You should be training augustus with the gene models and then
>>>> creating a new species model in augustus. As I understand it, the
>>>> filter
>>>> only
>>>> operates on gene models, not ab-initio predictions or alignments, so
>>>>it
>>>> probably isn't doing anything the way you have it set.
>>>>
>>>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>>>> mean by
>>>> boot-strapping here too.
>>>>
>>>> Hopefully that clears up some of the confusion with how maker works.
>>>> Carson
>>>> will probably have a lot of suggestions too.
>>>>
>>>> Thanks,
>>>> Daniel
>>>>
>>>> Daniel Ence
>>>> Graduate Student
>>>> Eccles Institute of Human Genetics
>>>> University of Utah
>>>> 15 North 2030 East, Room 2100
>>>> Salt Lake City, UT 84112-5330
>>>> ________________________________________
>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>> To: carsonhh at gmail.com
>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>> Subject: Re: [maker-devel] AED score
>>>>
>>>> Hi Carson,
>>>>
>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>> 30,000
>>>> genes.
>>>> Here are the step
>>>> Step1. EST and proteins are used to predict gene-models. the resulting
>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>> turned
>>>> ON
>>>> Step2. Augustus and SNAP is used to predict genes.
>>>> Step3. The results are re-annoated(boot-strap)
>>>> Step4. EST and proteins are used to predict gene-models. The gff file
>>>> from
>>>> step3. is used as model_gff. The resulting file is used as training
>>>> data-set for SNAP in step2
>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to
>>>>0.5
>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>>>> contig_size to 10kb
>>>>
>>>> Thanks and regards,
>>>> Parul Kudtarkar
>>>>
>>>> I have attached the configuration file for each step.
>>>>>  Your output has no genes.  They've all been filtered out.  The gene
>>>> predictions are left for reference purposes, but there are no gene
>>>> models
>>>>>  in the file.  You need to look at the type columns in the GFF3 file
>>>>> -->
>>>> match/match_part features are evidence and reference data but not
>>>> models.
>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>>>> just
>>>> want gene models in your file you can use the gff3_merge script with
>>>> the
>>>> -g option, and it will only print out the gene models.
>>>>>  I think you may be misinterpreting what is happening at different
>>>>> steps,
>>>> as well as how to read the result files.  Could you give me a detailed
>>>> explanation of what you expect to get back together with your control
>>>> files and I can walk you through the configuration, and indicate what
>>>> to
>>>> expect.  Also what was the report like from CEGMA. Could you include
>>>> the
>>>> report file that shows how complete your genome is and how fragmented
>>>> it
>>>> is?
>>>>>  Thanks,
>>>>>  Carson
>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>> Dear Carson,
>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>> Though for previous step(ab-intio gene predictions keep_preds was
>>>>>>set
>>>>>> to
>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>> Scaffold1_out.gff.
>>>>>> Please advice.
>>>>>> Thanks and regards,
>>>>>> Parul Kudtarkar
>>>>>>>  You should always get all predictions, but should only get models
>>>> (match/match_part) with AED scores less than 0.5.  You should never
>>>>get
>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>>> keep_preds set.
>>>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>>>> your
>>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>> case,
>>>>>>>  just set it to 0.  If the second one in the case, could you send
>>>>>>>me
>>>> example GFF3?
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>> Dear Carson,
>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>> short
>>>>>>>>  ESTs.
>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>> prediction(used as training dataset)and abinitio gene-prediction).
>>>> Here
>>>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>>>  however
>>>>>>>>  I
>>>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>>>  resulting
>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>>>  initial
>>>>>>>> gff3 file.
>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>>  eukaryotic
>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>>> file
>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes,
>>>>>>>> 0
>>>>>>>> =
>>>> no
>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 =
>>>>>>>> no
>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>>>  no
>>>>>>>> #-----MAKER Behavior Options
>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound
>>>>>>>> by
>>>> 0
>>>>>>>> and 1)
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>>> partial
>>>>>>>>> at
>>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>>> those
>>>> by
>>>>>>>>>  using maker's est_gff option to pass in results from cufflinks
>>>>>>>>>or
>>>>>>>>> trinity.
>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
>>>> size,
>>>>>>>>> just
>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>> maker_opts.ctl file.
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>with
>>>> N50
>>>>>>>>>>  of
>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>> reason
>>>>>>>>>>  when
>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>> predicted
>>>> despite the model_gff file has few genes with scores less than 0.75?
>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>> contig.
>>>>>>>>>> First
>>>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>>>> also
>>>>>>>>>> have
>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>> getting
>>>> many
>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>> models
>>>> that
>>>>>>>>>> are
>>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>>> piece
>>>>>>>>>> of
>>>>>>>>>> a
>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>reason
>>>>>>>>>>  unless
>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>>>  protein
>>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>>> need
>>>> to
>>>>>>>>>> add
>>>>>>>>>>  more proteins from a couple of related species, and you might
>>>> consider
>>>>>>>>>> using protein2genome rather than est2genome as a predictor if
>>>>>>>>>>you
>>>> are
>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>> produced
>>>> models
>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>with
>>>> the
>>>>>>>>>> AED_threshold with such limited protein support does create an
>>>> artificial
>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>  How many contigs do you have in total and what is the N50 value
>>>> for
>>>>>>>>>> the
>>>>>>>>>> assembly? If you have a large number of very short contigs, you
>>>>>>>>>> will
>>>>>>>>>>  get
>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>> contigs
>>>>>>>>>>  and
>>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>>> just
>>>> assembled in a slightly different way (so you can get bits and
>>>> pieces
>>>>>>>>>>  of
>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>  confounding
>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>> would
>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>  completeness
>>>>>>>>>> as
>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>> statistics
>>>>>>>>>> produced
>>>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>>>> those
>>>>>>>>>>  that
>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to
>>>>>>>>>> be
>>>> shorter
>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>CEGMA
>>>> gives
>>>>>>>>>>  a
>>>>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>>>>  pattern
>>>>>>>>>> can be expected to be even more exaggerated for other genes in
>>>>>>>>>> the
>>>> genome.
>>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>>> well
>>>> then
>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>genomes
>>>> end
>>>>>>>>>>  up
>>>>>>>>>> having extremely fragmented assemblies (on the order of 100,000
>>>> contigs),
>>>>>>>>>>  and if they are distantly related to other annotated species
>>>>>>>>>>few
>>>>>>>>>> proteins
>>>>>>>>>>  may align to the contigs because the introns in the alignments
>>>> tend
>>>>>>>>>>  to
>>>>>>>>>> be
>>>>>>>>>>  so long and exons so short that it pushes down the significance
>>>> scores
>>>>>>>>>> too
>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
>>>> only
>>>>>>>>>>  way
>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>  Thanks,
>>>>>>>>>>  Carson
>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>score.
>>>> The
>>>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>>>> file
>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>  least
>>>>>>>>>>  5
>>>>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>>>>  predicted
>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>>>>> attached
>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>> just
>>>>>>>>>> want
>>>>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>>>>> maker.
>>>>>>>>>> On
>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>> training
>>>>>>>>>>  gene
>>>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>>>  dataset
>>>>>>>>>> for
>>>>>>>>>>  SNAP training.  There are a number of filters available. Just
>>>> call
>>>>>>>>>>  the
>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>  Thanks,
>>>>>>>>>>  Carson
>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>> wrote:
>>>>>>>>>> Hi Parul,
>>>>>>>>>> I think the way you described (with the maker_opts.ctl file) is
>>>> how
>>>>>>>>>> you
>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>> Daniel
>>>>>>>>>> Daniel Ence
>>>>>>>>>> Graduate Student
>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>> University of Utah
>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>> ________________________________________
>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>  Kudtarkar
>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>> Also, are there any other parameters that are required when
>>>> filtering
>>>>>>>>>> based on AED score?
>>>>>>>>>>  Hello Carson,
>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>> models
>>>>>>>>>> at
>>>>>>>>>> specific AED score.
>>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>>> to
>>>>>>>>>> parameters
>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>> genes
>>>>>>>>>> gff3
>>>>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>>>> Thanks and regards,
>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>>> 1
>>>>>>>>>>  is
>>>>>>>>>> worst
>>>>>>>>>>  as
>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>> parameter
>>>>>>>>>> to
>>>>>>>>>>  require better matching to the evidence by setting it closer
>>>> to
>>>>>>>>>> 0.
>>>>>>>>>> You
>>>>>>>>>>  can
>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>> your
>>>>>>>>>> calls
>>>>>>>>>> may
>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>  --Carson
>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>> Dear Maker community,
>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>  based
>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>Augustus
>>>> predictions, followed by boot-strapping. I would typically expect
>>>> 20-30K
>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>  indicating
>>>>>>>>>>  too
>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>> predication/script to retain predictions with AED score 1 and if
>>>>>>>>>> yes
>>>>>>>>>> how
>>>>>>>>>> to go about this?
>>>>>>>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>> -l
>>>>>>>>>> ab
>>>>>>>>>> .o
>>>>>>>>>> rg
>>>>>>>>>>  --
>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>> 
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>a
>>>> b.
>>>>>>>>>> or
>>>>>>>>>> g
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>> 
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>a
>>>> b.
>>>>>>>>>> or
>>>>>>>>>> g
>>>>>>>>>>  _______________________________________________
>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>> 
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>ab
>>>> .o
>>>>>>>>>> rg
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>>
>>>>
>>>> --
>>>> Scientific Programmer
>>>> Center for Computational Regulatory Genomics
>>>> Beckman Institute,
>>>> California Institute of Technology
>>>> http://www.spbase.org
>>>>
>>>> --
>>>> Scientific Programmer
>>>> Center for Computational Regulatory Genomics
>>>> Beckman Institute,
>>>> California Institute of Technology
>>>> http://www.spbase.org
>>>>
>>>>
>>>>
>>>
>>>
>>>
>>
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>





From mark.rose at syngenta.com  Sat Dec  8 09:06:00 2012
From: mark.rose at syngenta.com (mark.rose at syngenta.com)
Date: Sat, 8 Dec 2012 11:06:00 -0500
Subject: [maker-devel] FW: maker error
In-Reply-To: <50C36102.6080306@mark62.me>
References: <50C36102.6080306@mark62.me>
Message-ID: <F0C46C4D691E2047A95E0293D5660AD00BC1359B99@USETCMSXMB03.NAFTA.SYNGENTA.ORG>

Hi

I just installed maker and am trying to run it with the sample data but get the following error:

$ maker
STATUS: Parsing control files...
WARNING: RepBase is not installed for RepeatMasker. This limits RepeatMasker's functionality and makes the model_org option in the control files virtually meaningless. MAKER will now reconfigure for simple repeat masking only.
STATUS: Processing and indexing input FASTA files...
Segmentation fault (core dumped)

I've attached the config files and the output of $maker --debug

Thanks for your help

Mark




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From carsonhh at gmail.com  Sun Dec  9 12:16:53 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Sun, 09 Dec 2012 14:16:53 -0500
Subject: [maker-devel] FW: maker error
In-Reply-To: <F0C46C4D691E2047A95E0293D5660AD00BC1359B99@USETCMSXMB03.NAFTA.SYNGENTA.ORG>
Message-ID: <CCEA4C91.16F67%carsonhh@gmail.com>

The error is most likely one related to Berkley DB on some systems that
has been fixed in the devel version of maker.  I've updated the maker
download at yandell-lab.org to version 2.27, so it also has the fix
integrated.

Thanks,
Carson




On 12-12-08 11:06 AM, "mark.rose at syngenta.com" <mark.rose at syngenta.com>
wrote:

>Hi
>
>I just installed maker and am trying to run it with the sample data but
>get the following error:
>
>$ maker
>STATUS: Parsing control files...
>WARNING: RepBase is not installed for RepeatMasker. This limits
>RepeatMasker's functionality and makes the model_org option in the
>control files virtually meaningless. MAKER will now reconfigure for
>simple repeat masking only.
>STATUS: Processing and indexing input FASTA files...
>Segmentation fault (core dumped)
>
>I've attached the config files and the output of $maker --debug
>
>Thanks for your help
>
>Mark
>
>
>
>
>This message may contain confidential information. If you are not the
>designated recipient, please notify the sender immediately, and delete
>the original and any copies. Any use of the message by you is prohibited.
>_______________________________________________
>maker-devel mailing list
>maker-devel at box290.bluehost.com
>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org





From carsonhh at gmail.com  Sun Dec  9 12:33:22 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Sun, 09 Dec 2012 14:33:22 -0500
Subject: [maker-devel] MAKER download updated to 2.27
Message-ID: <CCEA51B2.16F91%carsonhh@gmail.com>

MAKER has now been updated to version 2.27-beta on the yandell-lab.org
download site


Changes
* Fix parsing failure that rarely happen in some exonerate results
* Faster performance on NFS
* Workaround for filesystems that don't support hard links, and new command
line options to completely turn off file locking during runs
* Support for more indexing types beyond Berkley DB
* Fix for seg fault during indexing on some systems
* Better support for more MPI flavors (OpenMPi and MVAPICH2)
* Non-standard nucleotides now allowed although not recommended because they
may cause compatibility issues when you try and use MAKER results with other
programs that don't support those nucleotides.
* Other incremental bug fixes and performance enhancements.

Thanks,
Carson




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From parulk at caltech.edu  Mon Dec 10 20:28:24 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Mon, 10 Dec 2012 19:28:24 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCE7FF16.16F0A%carsonhh@gmail.com>
References: <CCE7FF16.16F0A%carsonhh@gmail.com>
Message-ID: <3576.131.215.15.234.1355196504.squirrel@webmail.caltech.edu>

Dear Carson, Thanks a lot for detailed explanation and all the help with
running and understanding maker2.


> Yes.  Lamprey is not a good match for sea urchin.  When training Augusuts
> you can sometimes use other genomes as starting points and let Augustus
> then modify that species to match the models you provided, which can be
> better than de novo training under certain circumstances. But given sea
> urchin's evolutionary distance from all the other species bundled with
> augustus, its probably not a good starting point.  So protein2genome
> derived models and cegma based training are probably your best options.
>
> --Carson
>
>
> On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>
>>Sorry for not checking this before, just to answer my own question I just
>>found after reading augustus documentation that autoAugTrain.pl should
>>work for generating training dataset for Augustus from using the
>>gene-model hints from first pass run of maker and using
>>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script to
>>generate training.gb
>>
>>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>>
>>I believe should work better than using lamprey to train augustus.
>>
>>Thanks and regards,
>>Parul Kudtarkar
>>
>>> Dear Carson,
>>>
>>> Thanks for detailed explanation and help. Now we know the exact
>>>parameters
>>> that should help us with generating good gene-model.
>>>
>>> The genome for which we are working on gene predictions is
>>> Echinoderm(sea-urchin). lamprey was the closest organism for training
>>> augustus that I could find. A quick question for training augustus,
>>>there
>>> is augustus_species option how would you go from training data
>>> generated
>>> by zff2augustus_gbk.pl > train.gb as specified here
>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>>> generating the species folder that can be specified to augustus_species
>>> option.
>>>
>>> The average expected gene-length in our case is ~15kb.
>>> We also have a good repeat library for our genome.
>>>
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>
>>>> For step 2 and 3, use lamprey rather than human in augustus.  For some
>>>> reason the current version of augustus doesn't diplay it as an option
>>>> for
>>>> the species help menu (so I didn't see it), but it's there in
>>>> ?/augustus/config/species/lamprey
>>>>
>>>> For any additional training, make copies into
>>>> ?/augustus/config/species/lamprey2 and
>>>> ?/augustus/config/species/lamprey3
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>
>>>> From:  Carson Holt <carsonhh at gmail.com>
>>>> Date:  Friday, 7 December, 2012 10:22 AM
>>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>>> "maker-devel at yandell-lab.org"
>>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>>> Subject:  Re: [maker-devel] AED score
>>>>
>>>> Just to add to Daniels comments.
>>>>
>>>> Things to change in step 1:
>>>>> protein= <just try and add more protein evidence in general>
>>>>> est2genome=0
>>>>> protein2genome=1
>>>>> split_hit=20000
>>>>> min_contig=50000
>>>>
>>>> Reasoning:
>>>>> Your ESTs are very short especially if this is a lamprey species
>>>>> which
>>>>> have
>>>>> very long introns and really short exons.  In lamprey (i.e.
>>>>> Petromyzon
>>>>> marinus), genes tend to be very long (remember gene lengths include
>>>>> introns
>>>>> and UTR and is not just the size of the coding sequence), so contigs
>>>>> shorter
>>>>> than 50kb are useless for training as you are unlikely to get nice
>>>>> complete
>>>>> gene models on those.  Also lampreys have very long introns, so you
>>>>> have
>>>>> to
>>>>> allow for bigger introns in alignments (split_hit parameter).
>>>>> Finally
>>>>> add as
>>>>> much protein evidence from as many sources as possible.  Your maker
>>>>> training
>>>>> run will take a long time as proteins take forever to align, but
>>>>> because
>>>>> of
>>>>> the evolutionary distance of lamprey from everything else and the
>>>>>short
>>>>> exon
>>>>> structure of its genome, very little aligns directly to its genome
>>>>>from
>>>>> other
>>>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>>>> species
>>>>> because of what you said about the  augustus species file you are
>>>>> using.
>>>>> Really the only thing closely related to lampreys unfortunately are
>>>>> other
>>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>>>>> lamprey
>>>>> (while they branch closely together on the tree of life, there are
>>>>> too
>>>>> many
>>>>> years since the last common ancestor).  So while they may have
>>>>> similar
>>>>> issues
>>>>> related to annotation (long introns and short exons etc.) they will
>>>>>not
>>>>> really
>>>>> match that well for the gene predictor or even protein alignments.
>>>>
>>>> Additional note:
>>>>> I have training files for the lamprey species Petromyzon marinus for
>>>>> both
>>>>> Augustus and SNAP that I could share with you in a few week, when the
>>>>> genome
>>>>> publication is is released.  But before that happens, new gene models
>>>>> will be
>>>>> available  through the UCSC browser (hopefully within a couple of
>>>>> weeks), and
>>>>> gene models are already available through ENSEMBL.  Get those protein
>>>>> files
>>>>> for training, it may be a big help for you.  If you want early access
>>>>> to
>>>>> the
>>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>>request
>>>>> it
>>>>> from Weiming Li at Michigan State University (the head of that genome
>>>>> project).
>>>>>
>>>>
>>>>
>>>> Things to change in step 2:
>>>>> Optimally you would be doing de novo training using mRNAseq results,
>>>>> but
>>>>> with
>>>>> on;ly sparse protein alignments and such a fragmented assembly, you
>>>>>are
>>>>> probably better off just trying to adapt the human HMM files.  They
>>>>> won't
>>>>> match that well, but you probably won't have the evidence for De Novo
>>>>> training.  First make a copy of the augustus human species directory
>>>>> and
>>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>>>> retraining
>>>>> augustus using your new models.  You will have to edit multiple files
>>>>> in
>>>>> the
>>>>> directory after you copy it so that they no longer say human or homo
>>>>> sapiens
>>>>> internally or in the file name.  Use maker2zff to generate the
>>>>>filtered
>>>>> ZFF
>>>>> file for training SNAP, but don't train SNAP.  Rather use the
>>>>> training
>>>>> file to
>>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>>
>>>>> MAKE a backup of the step 1 maker output directory and run step 2 in
>>>>> the
>>>>> old
>>>>> step 1 directory (this allows you to change the parameters and reuse
>>>>> files
>>>>> form step 1 so you don't have to recalculate all the protein and EST
>>>>> alignments).  So control files for step 2 are identical to step 1
>>>>> except
>>>>> for
>>>>> these parameters.
>>>>>
>>>>> protein2genome=0
>>>>> augustus_species=lamprey
>>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>>
>>>>> Don't both training SNAP here as you probably won't have enough data
>>>>> and
>>>>> you
>>>>> assembly is too fragmented for it to work well, so just stick to
>>>>> augustus.
>>>>> Try SNAP if you want just to see how well it works.  Manually open up
>>>>> the
>>>>> largest contigs in a viewer to look at the models produced from the
>>>>> MAKER run
>>>>> to see if they look reasonable (this will also help you decide
>>>>> whether
>>>>> to keep
>>>>> SNAP).
>>>>>
>>>>
>>>> Things to change in step 3:
>>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>>>>> make
>>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>>> ?/augustus/config/species/lamprey2 (editing all the files and names
>>>>> as
>>>>> you did
>>>>> in step 2). This way you don't loose that training data if you decide
>>>>> to
>>>>> step
>>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>>
>>>>> augustus_species=lamprey2
>>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>>
>>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>>> (This
>>>>> is
>>>>> for file reuse, so the step will run fast).  This must be the exact
>>>>> same
>>>>> step
>>>>> directory as step 2 for the reuse trick to work.
>>>>>
>>>>> Manually review the models and if you are satisfied move to step 4.
>>>>> Also note
>>>>> that most parameters including the protein, EST, and repeats should
>>>>>not
>>>>> change
>>>>> from step1-step3, and should not be removed for step 4 either, you
>>>>> can
>>>>> add
>>>>> more evidence, but don't remove evidence (like the repeats).
>>>>>
>>>>>
>>>> Things to change in step 4:
>>>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>>>> step
>>>>> 3
>>>>> directory to get the smaller contigs annotated.  This should be your
>>>>> final
>>>>> step, although you can try altering other parameters or adding more
>>>>> evidence
>>>>> sources here etc.
>>>>>
>>>>>
>>>> For other things to keep in mind, you should consider taking extra
>>>> time
>>>> to
>>>> build a comprehensive library of repeats for your species, I know that
>>>> Petromyzon marinus was virtually unannotatable until we had a very
>>>> deep
>>>> repeat library built for it.  Any repeat library should be used in all
>>>> steps.  Also for lamprey, you will expect between 20,000-30,000 genes
>>>> both
>>>> because of your assemblies fragmentation and because of some ancestral
>>>> genome duplication.  Also be aware that lampreys appear to undergo
>>>> programmed genome loss in somatic tissues, so any gene count you get
>>>> is
>>>> only
>>>> going to represent a maximum of 75-80% of all genes unless the
>>>> assembly
>>>> is
>>>> derived from germline tissue.
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>>
>>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>
>>>>> Hi Parul,
>>>>>
>>>>> In step one, if protein2genome isn't turned on, then the protein
>>>>> alignments
>>>>> wont be used to generate gene models. Carson said before to use
>>>>> protein2genome
>>>>> to generate gene models for your trainings set, but you should know
>>>>> that
>>>>> those
>>>>> data aren't being used right now.
>>>>>
>>>>> In step 2, you can include the est and protein evidence that you used
>>>>> in
>>>>> step
>>>>> one, and the ab-initio predictors will takes those data as hints to
>>>>> guide
>>>>> their predictions. Also, are you reannotating human here? I'm just
>>>>> wondering
>>>>> why the snap file is called Pult, but the augustus species model is
>>>>> human.
>>>>> Also, I think you should include the same masking files from step 1,
>>>>> otherwise
>>>>> the ab-initio predictors will be predicting on the unmasked sequence
>>>>> which
>>>>> will give you many spurious predictions.
>>>>>
>>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>>control
>>>>> file
>>>>> you sent for step 3 will just pass-through all of the data from
>>>>>before.
>>>>>
>>>>> In step 4, I think what you'll get is pretty close to what you
>>>>> already
>>>>> had in
>>>>> step 3. The gene models from step 3 are already based on the est and
>>>>> protein
>>>>> data from step 1, so without giving any different evidence or
>>>>>ab-initio
>>>>> predictors, I think that you will just get the same gene models that
>>>>> you
>>>>> got
>>>>> from step 3. Those gene models are what you should be using to train
>>>>> snap.
>>>>> Also, is this the same genome as in the other steps? The genome file
>>>>> here is
>>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>>
>>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>>create
>>>>> models. If you don't give any evidence (EST or protein) maker will
>>>>> not
>>>>> annotate any gene models. You have also changed the augustus species
>>>>> model in
>>>>> this step, but I don't know what you've gained by going from one
>>>>> species
>>>>> to
>>>>> another. You should be training augustus with the gene models and
>>>>> then
>>>>> creating a new species model in augustus. As I understand it, the
>>>>> filter
>>>>> only
>>>>> operates on gene models, not ab-initio predictions or alignments, so
>>>>>it
>>>>> probably isn't doing anything the way you have it set.
>>>>>
>>>>> Step 6. I think step 5 and 6 should be combined. I don't know what
>>>>> you
>>>>> mean by
>>>>> boot-strapping here too.
>>>>>
>>>>> Hopefully that clears up some of the confusion with how maker works.
>>>>> Carson
>>>>> will probably have a lot of suggestions too.
>>>>>
>>>>> Thanks,
>>>>> Daniel
>>>>>
>>>>> Daniel Ence
>>>>> Graduate Student
>>>>> Eccles Institute of Human Genetics
>>>>> University of Utah
>>>>> 15 North 2030 East, Room 2100
>>>>> Salt Lake City, UT 84112-5330
>>>>> ________________________________________
>>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>>> To: carsonhh at gmail.com
>>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>>> Subject: Re: [maker-devel] AED score
>>>>>
>>>>> Hi Carson,
>>>>>
>>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>>> 30,000
>>>>> genes.
>>>>> Here are the step
>>>>> Step1. EST and proteins are used to predict gene-models. the
>>>>> resulting
>>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>>> turned
>>>>> ON
>>>>> Step2. Augustus and SNAP is used to predict genes.
>>>>> Step3. The results are re-annoated(boot-strap)
>>>>> Step4. EST and proteins are used to predict gene-models. The gff file
>>>>> from
>>>>> step3. is used as model_gff. The resulting file is used as training
>>>>> data-set for SNAP in step2
>>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to
>>>>>0.5
>>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5
>>>>> and
>>>>> contig_size to 10kb
>>>>>
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>
>>>>> I have attached the configuration file for each step.
>>>>>>  Your output has no genes.  They've all been filtered out.  The gene
>>>>> predictions are left for reference purposes, but there are no gene
>>>>> models
>>>>>>  in the file.  You need to look at the type columns in the GFF3 file
>>>>>> -->
>>>>> match/match_part features are evidence and reference data but not
>>>>> models.
>>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>>>>> just
>>>>> want gene models in your file you can use the gff3_merge script with
>>>>> the
>>>>> -g option, and it will only print out the gene models.
>>>>>>  I think you may be misinterpreting what is happening at different
>>>>>> steps,
>>>>> as well as how to read the result files.  Could you give me a
>>>>> detailed
>>>>> explanation of what you expect to get back together with your control
>>>>> files and I can walk you through the configuration, and indicate what
>>>>> to
>>>>> expect.  Also what was the report like from CEGMA. Could you include
>>>>> the
>>>>> report file that shows how complete your genome is and how fragmented
>>>>> it
>>>>> is?
>>>>>>  Thanks,
>>>>>>  Carson
>>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Dear Carson,
>>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>>> Though for previous step(ab-intio gene predictions keep_preds was
>>>>>>>set
>>>>>>> to
>>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>>> Scaffold1_out.gff.
>>>>>>> Please advice.
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>>  You should always get all predictions, but should only get models
>>>>> (match/match_part) with AED scores less than 0.5.  You should never
>>>>>get
>>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>>>> keep_preds set.
>>>>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>>>>> your
>>>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>>> case,
>>>>>>>>  just set it to 0.  If the second one in the case, could you send
>>>>>>>>me
>>>>> example GFF3?
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>>> Dear Carson,
>>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>>> short
>>>>>>>>>  ESTs.
>>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>>> prediction(used as training dataset)and abinitio
>>>>>>>>> gene-prediction).
>>>>> Here
>>>>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>>>>  however
>>>>>>>>>  I
>>>>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>>>>  resulting
>>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>>>>  initial
>>>>>>>>> gff3 file.
>>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>>>  eukaryotic
>>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>>>> file
>>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 =
>>>>>>>>> yes,
>>>>>>>>> 0
>>>>>>>>> =
>>>>> no
>>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0
>>>>>>>>> =
>>>>>>>>> no
>>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>>>>  no
>>>>>>>>> #-----MAKER Behavior Options
>>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed
>>>>>>>>> (bound
>>>>>>>>> by
>>>>> 0
>>>>>>>>> and 1)
>>>>>>>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>>>> partial
>>>>>>>>>> at
>>>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>>>> those
>>>>> by
>>>>>>>>>>  using maker's est_gff option to pass in results from cufflinks
>>>>>>>>>>or
>>>>>>>>>> trinity.
>>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
>>>>> size,
>>>>>>>>>> just
>>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>>> maker_opts.ctl file.
>>>>>>>>>>  Thanks,
>>>>>>>>>>  Carson
>>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>>with
>>>>> N50
>>>>>>>>>>>  of
>>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>>> reason
>>>>>>>>>>>  when
>>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>>> predicted
>>>>> despite the model_gff file has few genes with scores less than 0.75?
>>>>> Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>>> contig.
>>>>>>>>>>> First
>>>>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>>>>> also
>>>>>>>>>>> have
>>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>>> getting
>>>>> many
>>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>>> models
>>>>> that
>>>>>>>>>>> are
>>>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>>>> piece
>>>>>>>>>>> of
>>>>>>>>>>> a
>>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>>reason
>>>>>>>>>>>  unless
>>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>>>>  protein
>>>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>>>> need
>>>>> to
>>>>>>>>>>> add
>>>>>>>>>>>  more proteins from a couple of related species, and you might
>>>>> consider
>>>>>>>>>>> using protein2genome rather than est2genome as a predictor if
>>>>>>>>>>>you
>>>>> are
>>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>>> produced
>>>>> models
>>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>>with
>>>>> the
>>>>>>>>>>> AED_threshold with such limited protein support does create an
>>>>> artificial
>>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>>  How many contigs do you have in total and what is the N50
>>>>>>>>>>> value
>>>>> for
>>>>>>>>>>> the
>>>>>>>>>>> assembly? If you have a large number of very short contigs, you
>>>>>>>>>>> will
>>>>>>>>>>>  get
>>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>>> contigs
>>>>>>>>>>>  and
>>>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>>>> just
>>>>> assembled in a slightly different way (so you can get bits and
>>>>> pieces
>>>>>>>>>>>  of
>>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>>  confounding
>>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>>> would
>>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>>  completeness
>>>>>>>>>>> as
>>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>>> statistics
>>>>>>>>>>> produced
>>>>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>>>>> those
>>>>>>>>>>>  that
>>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to
>>>>>>>>>>> be
>>>>> shorter
>>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>>CEGMA
>>>>> gives
>>>>>>>>>>>  a
>>>>>>>>>>> high partial percentage and a low complete percentage, then
>>>>>>>>>>> this
>>>>>>>>>>>  pattern
>>>>>>>>>>> can be expected to be even more exaggerated for other genes in
>>>>>>>>>>> the
>>>>> genome.
>>>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>>>> well
>>>>> then
>>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>>genomes
>>>>> end
>>>>>>>>>>>  up
>>>>>>>>>>> having extremely fragmented assemblies (on the order of 100,000
>>>>> contigs),
>>>>>>>>>>>  and if they are distantly related to other annotated species
>>>>>>>>>>>few
>>>>>>>>>>> proteins
>>>>>>>>>>>  may align to the contigs because the introns in the alignments
>>>>> tend
>>>>>>>>>>>  to
>>>>>>>>>>> be
>>>>>>>>>>>  so long and exons so short that it pushes down the
>>>>>>>>>>> significance
>>>>> scores
>>>>>>>>>>> too
>>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if
>>>>>>>>>>> not
>>>>> only
>>>>>>>>>>>  way
>>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>>  Thanks,
>>>>>>>>>>>  Carson
>>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>score.
>>>>> The
>>>>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>>>>> file
>>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>>  least
>>>>>>>>>>>  5
>>>>>>>>>>> genes with AED score less than 0.75. However there were no
>>>>>>>>>>> genes
>>>>>>>>>>>  predicted
>>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have
>>>>>>>>>>> also
>>>>>>>>>>> attached
>>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>> just
>>>>>>>>>>> want
>>>>>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>>>>>> maker.
>>>>>>>>>>> On
>>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>>> training
>>>>>>>>>>>  gene
>>>>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>>>>  dataset
>>>>>>>>>>> for
>>>>>>>>>>>  SNAP training.  There are a number of filters available. Just
>>>>> call
>>>>>>>>>>>  the
>>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>>  Thanks,
>>>>>>>>>>>  Carson
>>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>> Hi Parul,
>>>>>>>>>>> I think the way you described (with the maker_opts.ctl file) is
>>>>> how
>>>>>>>>>>> you
>>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>>> Daniel
>>>>>>>>>>> Daniel Ence
>>>>>>>>>>> Graduate Student
>>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>>> University of Utah
>>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>>> ________________________________________
>>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>  Kudtarkar
>>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>>> Also, are there any other parameters that are required when
>>>>> filtering
>>>>>>>>>>> based on AED score?
>>>>>>>>>>>  Hello Carson,
>>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>>> models
>>>>>>>>>>> at
>>>>>>>>>>> specific AED score.
>>>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>>>> to
>>>>>>>>>>> parameters
>>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>> genes
>>>>>>>>>>> gff3
>>>>>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>>>> 1
>>>>>>>>>>>  is
>>>>>>>>>>> worst
>>>>>>>>>>>  as
>>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>>> parameter
>>>>>>>>>>> to
>>>>>>>>>>>  require better matching to the evidence by setting it closer
>>>>> to
>>>>>>>>>>> 0.
>>>>>>>>>>> You
>>>>>>>>>>>  can
>>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>>> your
>>>>>>>>>>> calls
>>>>>>>>>>> may
>>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>>  --Carson
>>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>> Dear Maker community,
>>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>>  based
>>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>>Augustus
>>>>> predictions, followed by boot-strapping. I would typically expect
>>>>> 20-30K
>>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>>  indicating
>>>>>>>>>>>  too
>>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>>> predication/script to retain predictions with AED score 1 and
>>>>>>>>>>> if
>>>>>>>>>>> yes
>>>>>>>>>>> how
>>>>>>>>>>> to go about this?
>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>> -l
>>>>>>>>>>> ab
>>>>>>>>>>> .o
>>>>>>>>>>> rg
>>>>>>>>>>>  --
>>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>>a
>>>>> b.
>>>>>>>>>>> or
>>>>>>>>>>> g
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>>a
>>>>> b.
>>>>>>>>>>> or
>>>>>>>>>>> g
>>>>>>>>>>>  _______________________________________________
>>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>>>
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>>ab
>>>>> .o
>>>>>>>>>>> rg
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>
>>>>>
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>>>>
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>
>>
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From carsonhh at gmail.com  Tue Dec 11 07:21:44 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Tue, 11 Dec 2012 09:21:44 -0500
Subject: [maker-devel] AED score
In-Reply-To: <3576.131.215.15.234.1355196504.squirrel@webmail.caltech.edu>
Message-ID: <CCECAB6F.16FD3%carsonhh@gmail.com>

Thanks Parul.  If you need any more help, just let us know.

--Carson



On 12-12-10 10:28 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Carson, Thanks a lot for detailed explanation and all the help with
>running and understanding maker2.
>
>
>> Yes.  Lamprey is not a good match for sea urchin.  When training
>>Augusuts
>> you can sometimes use other genomes as starting points and let Augustus
>> then modify that species to match the models you provided, which can be
>> better than de novo training under certain circumstances. But given sea
>> urchin's evolutionary distance from all the other species bundled with
>> augustus, its probably not a good starting point.  So protein2genome
>> derived models and cegma based training are probably your best options.
>>
>> --Carson
>>
>>
>> On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>
>>>Sorry for not checking this before, just to answer my own question I
>>>just
>>>found after reading augustus documentation that autoAugTrain.pl should
>>>work for generating training dataset for Augustus from using the
>>>gene-model hints from first pass run of maker and using
>>>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script to
>>>generate training.gb
>>>
>>>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>>>
>>>I believe should work better than using lamprey to train augustus.
>>>
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>
>>>> Dear Carson,
>>>>
>>>> Thanks for detailed explanation and help. Now we know the exact
>>>>parameters
>>>> that should help us with generating good gene-model.
>>>>
>>>> The genome for which we are working on gene predictions is
>>>> Echinoderm(sea-urchin). lamprey was the closest organism for training
>>>> augustus that I could find. A quick question for training augustus,
>>>>there
>>>> is augustus_species option how would you go from training data
>>>> generated
>>>> by zff2augustus_gbk.pl > train.gb as specified here
>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>>>> generating the species folder that can be specified to
>>>>augustus_species
>>>> option.
>>>>
>>>> The average expected gene-length in our case is ~15kb.
>>>> We also have a good repeat library for our genome.
>>>>
>>>> Thanks and regards,
>>>> Parul Kudtarkar
>>>>
>>>>> For step 2 and 3, use lamprey rather than human in augustus.  For
>>>>>some
>>>>> reason the current version of augustus doesn't diplay it as an option
>>>>> for
>>>>> the species help menu (so I didn't see it), but it's there in
>>>>> ?/augustus/config/species/lamprey
>>>>>
>>>>> For any additional training, make copies into
>>>>> ?/augustus/config/species/lamprey2 and
>>>>> ?/augustus/config/species/lamprey3
>>>>>
>>>>> Thanks,
>>>>> Carson
>>>>>
>>>>>
>>>>>
>>>>> From:  Carson Holt <carsonhh at gmail.com>
>>>>> Date:  Friday, 7 December, 2012 10:22 AM
>>>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>>>> "maker-devel at yandell-lab.org"
>>>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>>>> Subject:  Re: [maker-devel] AED score
>>>>>
>>>>> Just to add to Daniels comments.
>>>>>
>>>>> Things to change in step 1:
>>>>>> protein= <just try and add more protein evidence in general>
>>>>>> est2genome=0
>>>>>> protein2genome=1
>>>>>> split_hit=20000
>>>>>> min_contig=50000
>>>>>
>>>>> Reasoning:
>>>>>> Your ESTs are very short especially if this is a lamprey species
>>>>>> which
>>>>>> have
>>>>>> very long introns and really short exons.  In lamprey (i.e.
>>>>>> Petromyzon
>>>>>> marinus), genes tend to be very long (remember gene lengths include
>>>>>> introns
>>>>>> and UTR and is not just the size of the coding sequence), so contigs
>>>>>> shorter
>>>>>> than 50kb are useless for training as you are unlikely to get nice
>>>>>> complete
>>>>>> gene models on those.  Also lampreys have very long introns, so you
>>>>>> have
>>>>>> to
>>>>>> allow for bigger introns in alignments (split_hit parameter).
>>>>>> Finally
>>>>>> add as
>>>>>> much protein evidence from as many sources as possible.  Your maker
>>>>>> training
>>>>>> run will take a long time as proteins take forever to align, but
>>>>>> because
>>>>>> of
>>>>>> the evolutionary distance of lamprey from everything else and the
>>>>>>short
>>>>>> exon
>>>>>> structure of its genome, very little aligns directly to its genome
>>>>>>from
>>>>>> other
>>>>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>>>>> species
>>>>>> because of what you said about the  augustus species file you are
>>>>>> using.
>>>>>> Really the only thing closely related to lampreys unfortunately are
>>>>>> other
>>>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>>>>>> lamprey
>>>>>> (while they branch closely together on the tree of life, there are
>>>>>> too
>>>>>> many
>>>>>> years since the last common ancestor).  So while they may have
>>>>>> similar
>>>>>> issues
>>>>>> related to annotation (long introns and short exons etc.) they will
>>>>>>not
>>>>>> really
>>>>>> match that well for the gene predictor or even protein alignments.
>>>>>
>>>>> Additional note:
>>>>>> I have training files for the lamprey species Petromyzon marinus for
>>>>>> both
>>>>>> Augustus and SNAP that I could share with you in a few week, when
>>>>>>the
>>>>>> genome
>>>>>> publication is is released.  But before that happens, new gene
>>>>>>models
>>>>>> will be
>>>>>> available  through the UCSC browser (hopefully within a couple of
>>>>>> weeks), and
>>>>>> gene models are already available through ENSEMBL.  Get those
>>>>>>protein
>>>>>> files
>>>>>> for training, it may be a big help for you.  If you want early
>>>>>>access
>>>>>> to
>>>>>> the
>>>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>>>request
>>>>>> it
>>>>>> from Weiming Li at Michigan State University (the head of that
>>>>>>genome
>>>>>> project).
>>>>>>
>>>>>
>>>>>
>>>>> Things to change in step 2:
>>>>>> Optimally you would be doing de novo training using mRNAseq results,
>>>>>> but
>>>>>> with
>>>>>> on;ly sparse protein alignments and such a fragmented assembly, you
>>>>>>are
>>>>>> probably better off just trying to adapt the human HMM files.  They
>>>>>> won't
>>>>>> match that well, but you probably won't have the evidence for De
>>>>>>Novo
>>>>>> training.  First make a copy of the augustus human species directory
>>>>>> and
>>>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>>>>> retraining
>>>>>> augustus using your new models.  You will have to edit multiple
>>>>>>files
>>>>>> in
>>>>>> the
>>>>>> directory after you copy it so that they no longer say human or homo
>>>>>> sapiens
>>>>>> internally or in the file name.  Use maker2zff to generate the
>>>>>>filtered
>>>>>> ZFF
>>>>>> file for training SNAP, but don't train SNAP.  Rather use the
>>>>>> training
>>>>>> file to
>>>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>>>
>>>>>> MAKE a backup of the step 1 maker output directory and run step 2 in
>>>>>> the
>>>>>> old
>>>>>> step 1 directory (this allows you to change the parameters and reuse
>>>>>> files
>>>>>> form step 1 so you don't have to recalculate all the protein and EST
>>>>>> alignments).  So control files for step 2 are identical to step 1
>>>>>> except
>>>>>> for
>>>>>> these parameters.
>>>>>>
>>>>>> protein2genome=0
>>>>>> augustus_species=lamprey
>>>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>>>
>>>>>> Don't both training SNAP here as you probably won't have enough data
>>>>>> and
>>>>>> you
>>>>>> assembly is too fragmented for it to work well, so just stick to
>>>>>> augustus.
>>>>>> Try SNAP if you want just to see how well it works.  Manually open
>>>>>>up
>>>>>> the
>>>>>> largest contigs in a viewer to look at the models produced from the
>>>>>> MAKER run
>>>>>> to see if they look reasonable (this will also help you decide
>>>>>> whether
>>>>>> to keep
>>>>>> SNAP).
>>>>>>
>>>>>
>>>>> Things to change in step 3:
>>>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>>>>>> make
>>>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>>>> ?/augustus/config/species/lamprey2 (editing all the files and names
>>>>>> as
>>>>>> you did
>>>>>> in step 2). This way you don't loose that training data if you
>>>>>>decide
>>>>>> to
>>>>>> step
>>>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>>>
>>>>>> augustus_species=lamprey2
>>>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>>>
>>>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>>>> (This
>>>>>> is
>>>>>> for file reuse, so the step will run fast).  This must be the exact
>>>>>> same
>>>>>> step
>>>>>> directory as step 2 for the reuse trick to work.
>>>>>>
>>>>>> Manually review the models and if you are satisfied move to step 4.
>>>>>> Also note
>>>>>> that most parameters including the protein, EST, and repeats should
>>>>>>not
>>>>>> change
>>>>>> from step1-step3, and should not be removed for step 4 either, you
>>>>>> can
>>>>>> add
>>>>>> more evidence, but don't remove evidence (like the repeats).
>>>>>>
>>>>>>
>>>>> Things to change in step 4:
>>>>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>>>>> step
>>>>>> 3
>>>>>> directory to get the smaller contigs annotated.  This should be your
>>>>>> final
>>>>>> step, although you can try altering other parameters or adding more
>>>>>> evidence
>>>>>> sources here etc.
>>>>>>
>>>>>>
>>>>> For other things to keep in mind, you should consider taking extra
>>>>> time
>>>>> to
>>>>> build a comprehensive library of repeats for your species, I know
>>>>>that
>>>>> Petromyzon marinus was virtually unannotatable until we had a very
>>>>> deep
>>>>> repeat library built for it.  Any repeat library should be used in
>>>>>all
>>>>> steps.  Also for lamprey, you will expect between 20,000-30,000 genes
>>>>> both
>>>>> because of your assemblies fragmentation and because of some
>>>>>ancestral
>>>>> genome duplication.  Also be aware that lampreys appear to undergo
>>>>> programmed genome loss in somatic tissues, so any gene count you get
>>>>> is
>>>>> only
>>>>> going to represent a maximum of 75-80% of all genes unless the
>>>>> assembly
>>>>> is
>>>>> derived from germline tissue.
>>>>>
>>>>> Thanks,
>>>>> Carson
>>>>>
>>>>>
>>>>>>
>>>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>
>>>>>> Hi Parul,
>>>>>>
>>>>>> In step one, if protein2genome isn't turned on, then the protein
>>>>>> alignments
>>>>>> wont be used to generate gene models. Carson said before to use
>>>>>> protein2genome
>>>>>> to generate gene models for your trainings set, but you should know
>>>>>> that
>>>>>> those
>>>>>> data aren't being used right now.
>>>>>>
>>>>>> In step 2, you can include the est and protein evidence that you
>>>>>>used
>>>>>> in
>>>>>> step
>>>>>> one, and the ab-initio predictors will takes those data as hints to
>>>>>> guide
>>>>>> their predictions. Also, are you reannotating human here? I'm just
>>>>>> wondering
>>>>>> why the snap file is called Pult, but the augustus species model is
>>>>>> human.
>>>>>> Also, I think you should include the same masking files from step 1,
>>>>>> otherwise
>>>>>> the ab-initio predictors will be predicting on the unmasked sequence
>>>>>> which
>>>>>> will give you many spurious predictions.
>>>>>>
>>>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>>>control
>>>>>> file
>>>>>> you sent for step 3 will just pass-through all of the data from
>>>>>>before.
>>>>>>
>>>>>> In step 4, I think what you'll get is pretty close to what you
>>>>>> already
>>>>>> had in
>>>>>> step 3. The gene models from step 3 are already based on the est and
>>>>>> protein
>>>>>> data from step 1, so without giving any different evidence or
>>>>>>ab-initio
>>>>>> predictors, I think that you will just get the same gene models that
>>>>>> you
>>>>>> got
>>>>>> from step 3. Those gene models are what you should be using to train
>>>>>> snap.
>>>>>> Also, is this the same genome as in the other steps? The genome file
>>>>>> here is
>>>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>>>
>>>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>>>create
>>>>>> models. If you don't give any evidence (EST or protein) maker will
>>>>>> not
>>>>>> annotate any gene models. You have also changed the augustus species
>>>>>> model in
>>>>>> this step, but I don't know what you've gained by going from one
>>>>>> species
>>>>>> to
>>>>>> another. You should be training augustus with the gene models and
>>>>>> then
>>>>>> creating a new species model in augustus. As I understand it, the
>>>>>> filter
>>>>>> only
>>>>>> operates on gene models, not ab-initio predictions or alignments, so
>>>>>>it
>>>>>> probably isn't doing anything the way you have it set.
>>>>>>
>>>>>> Step 6. I think step 5 and 6 should be combined. I don't know what
>>>>>> you
>>>>>> mean by
>>>>>> boot-strapping here too.
>>>>>>
>>>>>> Hopefully that clears up some of the confusion with how maker works.
>>>>>> Carson
>>>>>> will probably have a lot of suggestions too.
>>>>>>
>>>>>> Thanks,
>>>>>> Daniel
>>>>>>
>>>>>> Daniel Ence
>>>>>> Graduate Student
>>>>>> Eccles Institute of Human Genetics
>>>>>> University of Utah
>>>>>> 15 North 2030 East, Room 2100
>>>>>> Salt Lake City, UT 84112-5330
>>>>>> ________________________________________
>>>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>>>> To: carsonhh at gmail.com
>>>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>
>>>>>> Hi Carson,
>>>>>>
>>>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>>>> 30,000
>>>>>> genes.
>>>>>> Here are the step
>>>>>> Step1. EST and proteins are used to predict gene-models. the
>>>>>> resulting
>>>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>>>> turned
>>>>>> ON
>>>>>> Step2. Augustus and SNAP is used to predict genes.
>>>>>> Step3. The results are re-annoated(boot-strap)
>>>>>> Step4. EST and proteins are used to predict gene-models. The gff
>>>>>>file
>>>>>> from
>>>>>> step3. is used as model_gff. The resulting file is used as training
>>>>>> data-set for SNAP in step2
>>>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to
>>>>>>0.5
>>>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5
>>>>>> and
>>>>>> contig_size to 10kb
>>>>>>
>>>>>> Thanks and regards,
>>>>>> Parul Kudtarkar
>>>>>>
>>>>>> I have attached the configuration file for each step.
>>>>>>>  Your output has no genes.  They've all been filtered out.  The
>>>>>>>gene
>>>>>> predictions are left for reference purposes, but there are no gene
>>>>>> models
>>>>>>>  in the file.  You need to look at the type columns in the GFF3
>>>>>>>file
>>>>>>> -->
>>>>>> match/match_part features are evidence and reference data but not
>>>>>> models.
>>>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>>>>>> just
>>>>>> want gene models in your file you can use the gff3_merge script with
>>>>>> the
>>>>>> -g option, and it will only print out the gene models.
>>>>>>>  I think you may be misinterpreting what is happening at different
>>>>>>> steps,
>>>>>> as well as how to read the result files.  Could you give me a
>>>>>> detailed
>>>>>> explanation of what you expect to get back together with your
>>>>>>control
>>>>>> files and I can walk you through the configuration, and indicate
>>>>>>what
>>>>>> to
>>>>>> expect.  Also what was the report like from CEGMA. Could you include
>>>>>> the
>>>>>> report file that shows how complete your genome is and how
>>>>>>fragmented
>>>>>> it
>>>>>> is?
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>> Dear Carson,
>>>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>>>> Though for previous step(ab-intio gene predictions keep_preds was
>>>>>>>>set
>>>>>>>> to
>>>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>>>> Scaffold1_out.gff.
>>>>>>>> Please advice.
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>>  You should always get all predictions, but should only get
>>>>>>>>>models
>>>>>> (match/match_part) with AED scores less than 0.5.  You should never
>>>>>>get
>>>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>>>>> keep_preds set.
>>>>>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>>>>>> your
>>>>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>>>> case,
>>>>>>>>>  just set it to 0.  If the second one in the case, could you send
>>>>>>>>>me
>>>>>> example GFF3?
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>>> Dear Carson,
>>>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>>>> short
>>>>>>>>>>  ESTs.
>>>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>>>> prediction(used as training dataset)and abinitio
>>>>>>>>>> gene-prediction).
>>>>>> Here
>>>>>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>>>>>  however
>>>>>>>>>>  I
>>>>>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>>>>>  resulting
>>>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>>>>>  initial
>>>>>>>>>> gff3 file.
>>>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>>>>  eukaryotic
>>>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>>>>> file
>>>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 =
>>>>>>>>>> yes,
>>>>>>>>>> 0
>>>>>>>>>> =
>>>>>> no
>>>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0
>>>>>>>>>> =
>>>>>>>>>> no
>>>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0
>>>>>>=
>>>>>>>>>>  no
>>>>>>>>>> #-----MAKER Behavior Options
>>>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed
>>>>>>>>>> (bound
>>>>>>>>>> by
>>>>>> 0
>>>>>>>>>> and 1)
>>>>>>>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to
>>>>>>>>>>>be
>>>>>>>>>>> partial
>>>>>>>>>>> at
>>>>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>>>>> those
>>>>>> by
>>>>>>>>>>>  using maker's est_gff option to pass in results from cufflinks
>>>>>>>>>>>or
>>>>>>>>>>> trinity.
>>>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb
>>>>>>>>>>>in
>>>>>> size,
>>>>>>>>>>> just
>>>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>>>> maker_opts.ctl file.
>>>>>>>>>>>  Thanks,
>>>>>>>>>>>  Carson
>>>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>>>with
>>>>>> N50
>>>>>>>>>>>>  of
>>>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>>>> reason
>>>>>>>>>>>>  when
>>>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>>>> predicted
>>>>>> despite the model_gff file has few genes with scores less than 0.75?
>>>>>> Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>>>> contig.
>>>>>>>>>>>> First
>>>>>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>>>>>> also
>>>>>>>>>>>> have
>>>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>>>> getting
>>>>>> many
>>>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>>>> models
>>>>>> that
>>>>>>>>>>>> are
>>>>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>>>>> piece
>>>>>>>>>>>> of
>>>>>>>>>>>> a
>>>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>>>reason
>>>>>>>>>>>>  unless
>>>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>>>>>  protein
>>>>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>>>>> need
>>>>>> to
>>>>>>>>>>>> add
>>>>>>>>>>>>  more proteins from a couple of related species, and you might
>>>>>> consider
>>>>>>>>>>>> using protein2genome rather than est2genome as a predictor if
>>>>>>>>>>>>you
>>>>>> are
>>>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>>>> produced
>>>>>> models
>>>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>>>with
>>>>>> the
>>>>>>>>>>>> AED_threshold with such limited protein support does create an
>>>>>> artificial
>>>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>>>  How many contigs do you have in total and what is the N50
>>>>>>>>>>>> value
>>>>>> for
>>>>>>>>>>>> the
>>>>>>>>>>>> assembly? If you have a large number of very short contigs,
>>>>>>>>>>>>you
>>>>>>>>>>>> will
>>>>>>>>>>>>  get
>>>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>>>> contigs
>>>>>>>>>>>>  and
>>>>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>>>>> just
>>>>>> assembled in a slightly different way (so you can get bits and
>>>>>> pieces
>>>>>>>>>>>>  of
>>>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>>>  confounding
>>>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>>>> would
>>>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>>>  completeness
>>>>>>>>>>>> as
>>>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>>>> statistics
>>>>>>>>>>>> produced
>>>>>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>>>>>> those
>>>>>>>>>>>>  that
>>>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend
>>>>>>>>>>>>to
>>>>>>>>>>>> be
>>>>>> shorter
>>>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>>>CEGMA
>>>>>> gives
>>>>>>>>>>>>  a
>>>>>>>>>>>> high partial percentage and a low complete percentage, then
>>>>>>>>>>>> this
>>>>>>>>>>>>  pattern
>>>>>>>>>>>> can be expected to be even more exaggerated for other genes in
>>>>>>>>>>>> the
>>>>>> genome.
>>>>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>>>>> well
>>>>>> then
>>>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>>>genomes
>>>>>> end
>>>>>>>>>>>>  up
>>>>>>>>>>>> having extremely fragmented assemblies (on the order of
>>>>>>>>>>>>100,000
>>>>>> contigs),
>>>>>>>>>>>>  and if they are distantly related to other annotated species
>>>>>>>>>>>>few
>>>>>>>>>>>> proteins
>>>>>>>>>>>>  may align to the contigs because the introns in the
>>>>>>>>>>>>alignments
>>>>>> tend
>>>>>>>>>>>>  to
>>>>>>>>>>>> be
>>>>>>>>>>>>  so long and exons so short that it pushes down the
>>>>>>>>>>>> significance
>>>>>> scores
>>>>>>>>>>>> too
>>>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if
>>>>>>>>>>>> not
>>>>>> only
>>>>>>>>>>>>  way
>>>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>  Carson
>>>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>>score.
>>>>>> The
>>>>>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>>>>>> file
>>>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>>>  least
>>>>>>>>>>>>  5
>>>>>>>>>>>> genes with AED score less than 0.75. However there were no
>>>>>>>>>>>> genes
>>>>>>>>>>>>  predicted
>>>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have
>>>>>>>>>>>> also
>>>>>>>>>>>> attached
>>>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if
>>>>>>>>>>>>you
>>>>>>>>>>>> just
>>>>>>>>>>>> want
>>>>>>>>>>>>  to restrict final gene models to close matches directly
>>>>>>>>>>>>within
>>>>>>>>>>>> maker.
>>>>>>>>>>>> On
>>>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>>>> training
>>>>>>>>>>>>  gene
>>>>>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>>>>>  dataset
>>>>>>>>>>>> for
>>>>>>>>>>>>  SNAP training.  There are a number of filters available. Just
>>>>>> call
>>>>>>>>>>>>  the
>>>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>  Carson
>>>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>> Hi Parul,
>>>>>>>>>>>> I think the way you described (with the maker_opts.ctl file)
>>>>>>>>>>>>is
>>>>>> how
>>>>>>>>>>>> you
>>>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>>>> Daniel
>>>>>>>>>>>> Daniel Ence
>>>>>>>>>>>> Graduate Student
>>>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>>>> University of Utah
>>>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>>>> ________________________________________
>>>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>>  Kudtarkar
>>>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>>>> Also, are there any other parameters that are required when
>>>>>> filtering
>>>>>>>>>>>> based on AED score?
>>>>>>>>>>>>  Hello Carson,
>>>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>>>> models
>>>>>>>>>>>> at
>>>>>>>>>>>> specific AED score.
>>>>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>>>>> to
>>>>>>>>>>>> parameters
>>>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>> genes
>>>>>>>>>>>> gff3
>>>>>>>>>>>>  file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>threshold?
>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>>>>> 1
>>>>>>>>>>>>  is
>>>>>>>>>>>> worst
>>>>>>>>>>>>  as
>>>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>>>> parameter
>>>>>>>>>>>> to
>>>>>>>>>>>>  require better matching to the evidence by setting it closer
>>>>>> to
>>>>>>>>>>>> 0.
>>>>>>>>>>>> You
>>>>>>>>>>>>  can
>>>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>>>> your
>>>>>>>>>>>> calls
>>>>>>>>>>>> may
>>>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>>>  --Carson
>>>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>> Dear Maker community,
>>>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>  based
>>>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>>>Augustus
>>>>>> predictions, followed by boot-strapping. I would typically expect
>>>>>> 20-30K
>>>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>  indicating
>>>>>>>>>>>>  too
>>>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>>>> predication/script to retain predictions with AED score 1 and
>>>>>>>>>>>> if
>>>>>>>>>>>> yes
>>>>>>>>>>>> how
>>>>>>>>>>>> to go about this?
>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>> 
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>> -l
>>>>>>>>>>>> ab
>>>>>>>>>>>> .o
>>>>>>>>>>>> rg
>>>>>>>>>>>>  --
>>>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-l
>>>>>>>>>>>>a
>>>>>> b.
>>>>>>>>>>>> or
>>>>>>>>>>>> g
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-l
>>>>>>>>>>>>a
>>>>>> b.
>>>>>>>>>>>> or
>>>>>>>>>>>> g
>>>>>>>>>>>>  _______________________________________________
>>>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>>>>
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-l
>>>>>>>>>>>>ab
>>>>>> .o
>>>>>>>>>>>> rg
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>>>>
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> Scientific Programmer
>>>> Center for Computational Regulatory Genomics
>>>> Beckman Institute,
>>>> California Institute of Technology
>>>> http://www.spbase.org
>>>>
>>>
>>>
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>>>
>>
>>
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>





From parulk at caltech.edu  Thu Dec 13 15:16:53 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Thu, 13 Dec 2012 14:16:53 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCECAB6F.16FD3%carsonhh@gmail.com>
References: <CCECAB6F.16FD3%carsonhh@gmail.com>
Message-ID: <4575.131.215.15.234.1355437013.squirrel@webmail.caltech.edu>

Dear Carson,

Could you please advice how to combine results from protein2genome
derived models and cegma based training to be provided as training species
for augustus or are theses supposed to be run as separate maker2 run(i.e.
run maker2 with training set from protein2genome first followed by
cegma-based training set)

Thanks and regards,
Parul

> Thanks Parul.  If you need any more help, just let us know.
>
> --Carson
>
>
>
> On 12-12-10 10:28 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>
>>Dear Carson, Thanks a lot for detailed explanation and all the help with
>>running and understanding maker2.
>>
>>
>>> Yes.  Lamprey is not a good match for sea urchin.  When training
>>>Augusuts
>>> you can sometimes use other genomes as starting points and let Augustus
>>> then modify that species to match the models you provided, which can be
>>> better than de novo training under certain circumstances. But given sea
>>> urchin's evolutionary distance from all the other species bundled with
>>> augustus, its probably not a good starting point.  So protein2genome
>>> derived models and cegma based training are probably your best options.
>>>
>>> --Carson
>>>
>>>
>>> On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>
>>>>Sorry for not checking this before, just to answer my own question I
>>>>just
>>>>found after reading augustus documentation that autoAugTrain.pl should
>>>>work for generating training dataset for Augustus from using the
>>>>gene-model hints from first pass run of maker and using
>>>>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script
>>>> to
>>>>generate training.gb
>>>>
>>>>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>>>>
>>>>I believe should work better than using lamprey to train augustus.
>>>>
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>
>>>>> Dear Carson,
>>>>>
>>>>> Thanks for detailed explanation and help. Now we know the exact
>>>>>parameters
>>>>> that should help us with generating good gene-model.
>>>>>
>>>>> The genome for which we are working on gene predictions is
>>>>> Echinoderm(sea-urchin). lamprey was the closest organism for training
>>>>> augustus that I could find. A quick question for training augustus,
>>>>>there
>>>>> is augustus_species option how would you go from training data
>>>>> generated
>>>>> by zff2augustus_gbk.pl > train.gb as specified here
>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>>>>> generating the species folder that can be specified to
>>>>>augustus_species
>>>>> option.
>>>>>
>>>>> The average expected gene-length in our case is ~15kb.
>>>>> We also have a good repeat library for our genome.
>>>>>
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>
>>>>>> For step 2 and 3, use lamprey rather than human in augustus.  For
>>>>>>some
>>>>>> reason the current version of augustus doesn't diplay it as an
>>>>>> option
>>>>>> for
>>>>>> the species help menu (so I didn't see it), but it's there in
>>>>>> ?/augustus/config/species/lamprey
>>>>>>
>>>>>> For any additional training, make copies into
>>>>>> ?/augustus/config/species/lamprey2 and
>>>>>> ?/augustus/config/species/lamprey3
>>>>>>
>>>>>> Thanks,
>>>>>> Carson
>>>>>>
>>>>>>
>>>>>>
>>>>>> From:  Carson Holt <carsonhh at gmail.com>
>>>>>> Date:  Friday, 7 December, 2012 10:22 AM
>>>>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>>>>> "maker-devel at yandell-lab.org"
>>>>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>>>>> Subject:  Re: [maker-devel] AED score
>>>>>>
>>>>>> Just to add to Daniels comments.
>>>>>>
>>>>>> Things to change in step 1:
>>>>>>> protein= <just try and add more protein evidence in general>
>>>>>>> est2genome=0
>>>>>>> protein2genome=1
>>>>>>> split_hit=20000
>>>>>>> min_contig=50000
>>>>>>
>>>>>> Reasoning:
>>>>>>> Your ESTs are very short especially if this is a lamprey species
>>>>>>> which
>>>>>>> have
>>>>>>> very long introns and really short exons.  In lamprey (i.e.
>>>>>>> Petromyzon
>>>>>>> marinus), genes tend to be very long (remember gene lengths include
>>>>>>> introns
>>>>>>> and UTR and is not just the size of the coding sequence), so
>>>>>>> contigs
>>>>>>> shorter
>>>>>>> than 50kb are useless for training as you are unlikely to get nice
>>>>>>> complete
>>>>>>> gene models on those.  Also lampreys have very long introns, so you
>>>>>>> have
>>>>>>> to
>>>>>>> allow for bigger introns in alignments (split_hit parameter).
>>>>>>> Finally
>>>>>>> add as
>>>>>>> much protein evidence from as many sources as possible.  Your maker
>>>>>>> training
>>>>>>> run will take a long time as proteins take forever to align, but
>>>>>>> because
>>>>>>> of
>>>>>>> the evolutionary distance of lamprey from everything else and the
>>>>>>>short
>>>>>>> exon
>>>>>>> structure of its genome, very little aligns directly to its genome
>>>>>>>from
>>>>>>> other
>>>>>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>>>>>> species
>>>>>>> because of what you said about the  augustus species file you are
>>>>>>> using.
>>>>>>> Really the only thing closely related to lampreys unfortunately are
>>>>>>> other
>>>>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related
>>>>>>> to
>>>>>>> lamprey
>>>>>>> (while they branch closely together on the tree of life, there are
>>>>>>> too
>>>>>>> many
>>>>>>> years since the last common ancestor).  So while they may have
>>>>>>> similar
>>>>>>> issues
>>>>>>> related to annotation (long introns and short exons etc.) they will
>>>>>>>not
>>>>>>> really
>>>>>>> match that well for the gene predictor or even protein alignments.
>>>>>>
>>>>>> Additional note:
>>>>>>> I have training files for the lamprey species Petromyzon marinus
>>>>>>> for
>>>>>>> both
>>>>>>> Augustus and SNAP that I could share with you in a few week, when
>>>>>>>the
>>>>>>> genome
>>>>>>> publication is is released.  But before that happens, new gene
>>>>>>>models
>>>>>>> will be
>>>>>>> available  through the UCSC browser (hopefully within a couple of
>>>>>>> weeks), and
>>>>>>> gene models are already available through ENSEMBL.  Get those
>>>>>>>protein
>>>>>>> files
>>>>>>> for training, it may be a big help for you.  If you want early
>>>>>>>access
>>>>>>> to
>>>>>>> the
>>>>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>>>>request
>>>>>>> it
>>>>>>> from Weiming Li at Michigan State University (the head of that
>>>>>>>genome
>>>>>>> project).
>>>>>>>
>>>>>>
>>>>>>
>>>>>> Things to change in step 2:
>>>>>>> Optimally you would be doing de novo training using mRNAseq
>>>>>>> results,
>>>>>>> but
>>>>>>> with
>>>>>>> on;ly sparse protein alignments and such a fragmented assembly, you
>>>>>>>are
>>>>>>> probably better off just trying to adapt the human HMM files.  They
>>>>>>> won't
>>>>>>> match that well, but you probably won't have the evidence for De
>>>>>>>Novo
>>>>>>> training.  First make a copy of the augustus human species
>>>>>>> directory
>>>>>>> and
>>>>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>>>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>>>>>> retraining
>>>>>>> augustus using your new models.  You will have to edit multiple
>>>>>>>files
>>>>>>> in
>>>>>>> the
>>>>>>> directory after you copy it so that they no longer say human or
>>>>>>> homo
>>>>>>> sapiens
>>>>>>> internally or in the file name.  Use maker2zff to generate the
>>>>>>>filtered
>>>>>>> ZFF
>>>>>>> file for training SNAP, but don't train SNAP.  Rather use the
>>>>>>> training
>>>>>>> file to
>>>>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>>>>
>>>>>>> MAKE a backup of the step 1 maker output directory and run step 2
>>>>>>> in
>>>>>>> the
>>>>>>> old
>>>>>>> step 1 directory (this allows you to change the parameters and
>>>>>>> reuse
>>>>>>> files
>>>>>>> form step 1 so you don't have to recalculate all the protein and
>>>>>>> EST
>>>>>>> alignments).  So control files for step 2 are identical to step 1
>>>>>>> except
>>>>>>> for
>>>>>>> these parameters.
>>>>>>>
>>>>>>> protein2genome=0
>>>>>>> augustus_species=lamprey
>>>>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>>>>
>>>>>>> Don't both training SNAP here as you probably won't have enough
>>>>>>> data
>>>>>>> and
>>>>>>> you
>>>>>>> assembly is too fragmented for it to work well, so just stick to
>>>>>>> augustus.
>>>>>>> Try SNAP if you want just to see how well it works.  Manually open
>>>>>>>up
>>>>>>> the
>>>>>>> largest contigs in a viewer to look at the models produced from the
>>>>>>> MAKER run
>>>>>>> to see if they look reasonable (this will also help you decide
>>>>>>> whether
>>>>>>> to keep
>>>>>>> SNAP).
>>>>>>>
>>>>>>
>>>>>> Things to change in step 3:
>>>>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.
>>>>>>> But
>>>>>>> make
>>>>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>>>>> ?/augustus/config/species/lamprey2 (editing all the files and names
>>>>>>> as
>>>>>>> you did
>>>>>>> in step 2). This way you don't loose that training data if you
>>>>>>>decide
>>>>>>> to
>>>>>>> step
>>>>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>>>>
>>>>>>> augustus_species=lamprey2
>>>>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>>>>
>>>>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>>>>> (This
>>>>>>> is
>>>>>>> for file reuse, so the step will run fast).  This must be the exact
>>>>>>> same
>>>>>>> step
>>>>>>> directory as step 2 for the reuse trick to work.
>>>>>>>
>>>>>>> Manually review the models and if you are satisfied move to step 4.
>>>>>>> Also note
>>>>>>> that most parameters including the protein, EST, and repeats should
>>>>>>>not
>>>>>>> change
>>>>>>> from step1-step3, and should not be removed for step 4 either, you
>>>>>>> can
>>>>>>> add
>>>>>>> more evidence, but don't remove evidence (like the repeats).
>>>>>>>
>>>>>>>
>>>>>> Things to change in step 4:
>>>>>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>>>>>> step
>>>>>>> 3
>>>>>>> directory to get the smaller contigs annotated.  This should be
>>>>>>> your
>>>>>>> final
>>>>>>> step, although you can try altering other parameters or adding more
>>>>>>> evidence
>>>>>>> sources here etc.
>>>>>>>
>>>>>>>
>>>>>> For other things to keep in mind, you should consider taking extra
>>>>>> time
>>>>>> to
>>>>>> build a comprehensive library of repeats for your species, I know
>>>>>>that
>>>>>> Petromyzon marinus was virtually unannotatable until we had a very
>>>>>> deep
>>>>>> repeat library built for it.  Any repeat library should be used in
>>>>>>all
>>>>>> steps.  Also for lamprey, you will expect between 20,000-30,000
>>>>>> genes
>>>>>> both
>>>>>> because of your assemblies fragmentation and because of some
>>>>>>ancestral
>>>>>> genome duplication.  Also be aware that lampreys appear to undergo
>>>>>> programmed genome loss in somatic tissues, so any gene count you get
>>>>>> is
>>>>>> only
>>>>>> going to represent a maximum of 75-80% of all genes unless the
>>>>>> assembly
>>>>>> is
>>>>>> derived from germline tissue.
>>>>>>
>>>>>> Thanks,
>>>>>> Carson
>>>>>>
>>>>>>
>>>>>>>
>>>>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>
>>>>>>> Hi Parul,
>>>>>>>
>>>>>>> In step one, if protein2genome isn't turned on, then the protein
>>>>>>> alignments
>>>>>>> wont be used to generate gene models. Carson said before to use
>>>>>>> protein2genome
>>>>>>> to generate gene models for your trainings set, but you should know
>>>>>>> that
>>>>>>> those
>>>>>>> data aren't being used right now.
>>>>>>>
>>>>>>> In step 2, you can include the est and protein evidence that you
>>>>>>>used
>>>>>>> in
>>>>>>> step
>>>>>>> one, and the ab-initio predictors will takes those data as hints to
>>>>>>> guide
>>>>>>> their predictions. Also, are you reannotating human here? I'm just
>>>>>>> wondering
>>>>>>> why the snap file is called Pult, but the augustus species model is
>>>>>>> human.
>>>>>>> Also, I think you should include the same masking files from step
>>>>>>> 1,
>>>>>>> otherwise
>>>>>>> the ab-initio predictors will be predicting on the unmasked
>>>>>>> sequence
>>>>>>> which
>>>>>>> will give you many spurious predictions.
>>>>>>>
>>>>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>>>>control
>>>>>>> file
>>>>>>> you sent for step 3 will just pass-through all of the data from
>>>>>>>before.
>>>>>>>
>>>>>>> In step 4, I think what you'll get is pretty close to what you
>>>>>>> already
>>>>>>> had in
>>>>>>> step 3. The gene models from step 3 are already based on the est
>>>>>>> and
>>>>>>> protein
>>>>>>> data from step 1, so without giving any different evidence or
>>>>>>>ab-initio
>>>>>>> predictors, I think that you will just get the same gene models
>>>>>>> that
>>>>>>> you
>>>>>>> got
>>>>>>> from step 3. Those gene models are what you should be using to
>>>>>>> train
>>>>>>> snap.
>>>>>>> Also, is this the same genome as in the other steps? The genome
>>>>>>> file
>>>>>>> here is
>>>>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>>>>
>>>>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>>>>create
>>>>>>> models. If you don't give any evidence (EST or protein) maker will
>>>>>>> not
>>>>>>> annotate any gene models. You have also changed the augustus
>>>>>>> species
>>>>>>> model in
>>>>>>> this step, but I don't know what you've gained by going from one
>>>>>>> species
>>>>>>> to
>>>>>>> another. You should be training augustus with the gene models and
>>>>>>> then
>>>>>>> creating a new species model in augustus. As I understand it, the
>>>>>>> filter
>>>>>>> only
>>>>>>> operates on gene models, not ab-initio predictions or alignments,
>>>>>>> so
>>>>>>>it
>>>>>>> probably isn't doing anything the way you have it set.
>>>>>>>
>>>>>>> Step 6. I think step 5 and 6 should be combined. I don't know what
>>>>>>> you
>>>>>>> mean by
>>>>>>> boot-strapping here too.
>>>>>>>
>>>>>>> Hopefully that clears up some of the confusion with how maker
>>>>>>> works.
>>>>>>> Carson
>>>>>>> will probably have a lot of suggestions too.
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Daniel
>>>>>>>
>>>>>>> Daniel Ence
>>>>>>> Graduate Student
>>>>>>> Eccles Institute of Human Genetics
>>>>>>> University of Utah
>>>>>>> 15 North 2030 East, Room 2100
>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>> ________________________________________
>>>>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>>>>> To: carsonhh at gmail.com
>>>>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>
>>>>>>> Hi Carson,
>>>>>>>
>>>>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>>>>> 30,000
>>>>>>> genes.
>>>>>>> Here are the step
>>>>>>> Step1. EST and proteins are used to predict gene-models. the
>>>>>>> resulting
>>>>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>>>>> turned
>>>>>>> ON
>>>>>>> Step2. Augustus and SNAP is used to predict genes.
>>>>>>> Step3. The results are re-annoated(boot-strap)
>>>>>>> Step4. EST and proteins are used to predict gene-models. The gff
>>>>>>>file
>>>>>>> from
>>>>>>> step3. is used as model_gff. The resulting file is used as training
>>>>>>> data-set for SNAP in step2
>>>>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to
>>>>>>>0.5
>>>>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5
>>>>>>> and
>>>>>>> contig_size to 10kb
>>>>>>>
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>
>>>>>>> I have attached the configuration file for each step.
>>>>>>>>  Your output has no genes.  They've all been filtered out.  The
>>>>>>>>gene
>>>>>>> predictions are left for reference purposes, but there are no gene
>>>>>>> models
>>>>>>>>  in the file.  You need to look at the type columns in the GFF3
>>>>>>>>file
>>>>>>>> -->
>>>>>>> match/match_part features are evidence and reference data but not
>>>>>>> models.
>>>>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if
>>>>>>>> you
>>>>>>>> just
>>>>>>> want gene models in your file you can use the gff3_merge script
>>>>>>> with
>>>>>>> the
>>>>>>> -g option, and it will only print out the gene models.
>>>>>>>>  I think you may be misinterpreting what is happening at different
>>>>>>>> steps,
>>>>>>> as well as how to read the result files.  Could you give me a
>>>>>>> detailed
>>>>>>> explanation of what you expect to get back together with your
>>>>>>>control
>>>>>>> files and I can walk you through the configuration, and indicate
>>>>>>>what
>>>>>>> to
>>>>>>> expect.  Also what was the report like from CEGMA. Could you
>>>>>>> include
>>>>>>> the
>>>>>>> report file that shows how complete your genome is and how
>>>>>>>fragmented
>>>>>>> it
>>>>>>> is?
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>>> Dear Carson,
>>>>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>>>>> Though for previous step(ab-intio gene predictions keep_preds was
>>>>>>>>>set
>>>>>>>>> to
>>>>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>>>>> Scaffold1_out.gff.
>>>>>>>>> Please advice.
>>>>>>>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>  You should always get all predictions, but should only get
>>>>>>>>>>models
>>>>>>> (match/match_part) with AED scores less than 0.5.  You should never
>>>>>>>get
>>>>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you
>>>>>>>>>> have
>>>>>>> keep_preds set.
>>>>>>>>>>  Do you have keeps_preds set or gene models with AED values
>>>>>>>>>> above
>>>>>>>>>> your
>>>>>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>>>>> case,
>>>>>>>>>>  just set it to 0.  If the second one in the case, could you
>>>>>>>>>> send
>>>>>>>>>>me
>>>>>>> example GFF3?
>>>>>>>>>>  Thanks,
>>>>>>>>>>  Carson
>>>>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>>> Dear Carson,
>>>>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>>>>> short
>>>>>>>>>>>  ESTs.
>>>>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>>>>> prediction(used as training dataset)and abinitio
>>>>>>>>>>> gene-prediction).
>>>>>>> Here
>>>>>>>>>>> are the control parameters I am using with AED score set to
>>>>>>>>>>> 0.5,
>>>>>>>>>>>  however
>>>>>>>>>>>  I
>>>>>>>>>>> get predictions that includes the ones with AED score of 1.00
>>>>>>>>>>> in
>>>>>>>>>>>  resulting
>>>>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3
>>>>>>>>>>> of
>>>>>>>>>>>  initial
>>>>>>>>>>> gff3 file.
>>>>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>>>>>  eukaryotic
>>>>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this
>>>>>>>>>>> gff3
>>>>>>>>>>> file
>>>>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 =
>>>>>>>>>>> yes,
>>>>>>>>>>> 0
>>>>>>>>>>> =
>>>>>>> no
>>>>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes,
>>>>>>>>>>> 0
>>>>>>>>>>> =
>>>>>>>>>>> no
>>>>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0
>>>>>>>=
>>>>>>>>>>>  no
>>>>>>>>>>> #-----MAKER Behavior Options
>>>>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed
>>>>>>>>>>> (bound
>>>>>>>>>>> by
>>>>>>> 0
>>>>>>>>>>> and 1)
>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to
>>>>>>>>>>>>be
>>>>>>>>>>>> partial
>>>>>>>>>>>> at
>>>>>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>>>>>> those
>>>>>>> by
>>>>>>>>>>>>  using maker's est_gff option to pass in results from
>>>>>>>>>>>> cufflinks
>>>>>>>>>>>>or
>>>>>>>>>>>> trinity.
>>>>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb
>>>>>>>>>>>>in
>>>>>>> size,
>>>>>>>>>>>> just
>>>>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>>>>> maker_opts.ctl file.
>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>  Carson
>>>>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>>>>with
>>>>>>> N50
>>>>>>>>>>>>>  of
>>>>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>>>>> reason
>>>>>>>>>>>>>  when
>>>>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>>>>> predicted
>>>>>>> despite the model_gff file has few genes with scores less than
>>>>>>> 0.75?
>>>>>>> Thanks and regards,
>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>>>>> contig.
>>>>>>>>>>>>> First
>>>>>>>>>>>>>  it seems to be repeat rich with a very low gene density.
>>>>>>>>>>>>> You
>>>>>>>>>>>>> also
>>>>>>>>>>>>> have
>>>>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>>>>> getting
>>>>>>> many
>>>>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>>>>> models
>>>>>>> that
>>>>>>>>>>>>> are
>>>>>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>>>>>> piece
>>>>>>>>>>>>> of
>>>>>>>>>>>>> a
>>>>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>>>>reason
>>>>>>>>>>>>>  unless
>>>>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).
>>>>>>>>>>>>> Your
>>>>>>>>>>>>>  protein
>>>>>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>>>>>> need
>>>>>>> to
>>>>>>>>>>>>> add
>>>>>>>>>>>>>  more proteins from a couple of related species, and you
>>>>>>>>>>>>> might
>>>>>>> consider
>>>>>>>>>>>>> using protein2genome rather than est2genome as a predictor if
>>>>>>>>>>>>>you
>>>>>>> are
>>>>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>>>>> produced
>>>>>>> models
>>>>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>>>>with
>>>>>>> the
>>>>>>>>>>>>> AED_threshold with such limited protein support does create
>>>>>>>>>>>>> an
>>>>>>> artificial
>>>>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>>>>  How many contigs do you have in total and what is the N50
>>>>>>>>>>>>> value
>>>>>>> for
>>>>>>>>>>>>> the
>>>>>>>>>>>>> assembly? If you have a large number of very short contigs,
>>>>>>>>>>>>>you
>>>>>>>>>>>>> will
>>>>>>>>>>>>>  get
>>>>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>>>>> contigs
>>>>>>>>>>>>>  and
>>>>>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>>>>>> just
>>>>>>> assembled in a slightly different way (so you can get bits and
>>>>>>> pieces
>>>>>>>>>>>>>  of
>>>>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>>>>  confounding
>>>>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>>>>> would
>>>>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>>>>  completeness
>>>>>>>>>>>>> as
>>>>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>>>>> statistics
>>>>>>>>>>>>> produced
>>>>>>>>>>>>>  is a percent of genes that are found complete (end to end)
>>>>>>>>>>>>> vs
>>>>>>> those
>>>>>>>>>>>>>  that
>>>>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend
>>>>>>>>>>>>>to
>>>>>>>>>>>>> be
>>>>>>> shorter
>>>>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>>>>CEGMA
>>>>>>> gives
>>>>>>>>>>>>>  a
>>>>>>>>>>>>> high partial percentage and a low complete percentage, then
>>>>>>>>>>>>> this
>>>>>>>>>>>>>  pattern
>>>>>>>>>>>>> can be expected to be even more exaggerated for other genes
>>>>>>>>>>>>> in
>>>>>>>>>>>>> the
>>>>>>> genome.
>>>>>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>>>>>> well
>>>>>>> then
>>>>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>>>>genomes
>>>>>>> end
>>>>>>>>>>>>>  up
>>>>>>>>>>>>> having extremely fragmented assemblies (on the order of
>>>>>>>>>>>>>100,000
>>>>>>> contigs),
>>>>>>>>>>>>>  and if they are distantly related to other annotated species
>>>>>>>>>>>>>few
>>>>>>>>>>>>> proteins
>>>>>>>>>>>>>  may align to the contigs because the introns in the
>>>>>>>>>>>>>alignments
>>>>>>> tend
>>>>>>>>>>>>>  to
>>>>>>>>>>>>> be
>>>>>>>>>>>>>  so long and exons so short that it pushes down the
>>>>>>>>>>>>> significance
>>>>>>> scores
>>>>>>>>>>>>> too
>>>>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if
>>>>>>>>>>>>> not
>>>>>>> only
>>>>>>>>>>>>>  way
>>>>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>>>score.
>>>>>>> The
>>>>>>>>>>>>> input gff3 file was provided to option model_pred(see
>>>>>>>>>>>>> attached
>>>>>>>>>>>>> file
>>>>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>>>>  least
>>>>>>>>>>>>>  5
>>>>>>>>>>>>> genes with AED score less than 0.75. However there were no
>>>>>>>>>>>>> genes
>>>>>>>>>>>>>  predicted
>>>>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have
>>>>>>>>>>>>> also
>>>>>>>>>>>>> attached
>>>>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if
>>>>>>>>>>>>>you
>>>>>>>>>>>>> just
>>>>>>>>>>>>> want
>>>>>>>>>>>>>  to restrict final gene models to close matches directly
>>>>>>>>>>>>>within
>>>>>>>>>>>>> maker.
>>>>>>>>>>>>> On
>>>>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>>>>> training
>>>>>>>>>>>>>  gene
>>>>>>>>>>>>> predictors, use the maker2zff script for generating a
>>>>>>>>>>>>> filtered
>>>>>>>>>>>>>  dataset
>>>>>>>>>>>>> for
>>>>>>>>>>>>>  SNAP training.  There are a number of filters available.
>>>>>>>>>>>>> Just
>>>>>>> call
>>>>>>>>>>>>>  the
>>>>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>> Hi Parul,
>>>>>>>>>>>>> I think the way you described (with the maker_opts.ctl file)
>>>>>>>>>>>>>is
>>>>>>> how
>>>>>>>>>>>>> you
>>>>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>>>>> Daniel
>>>>>>>>>>>>> Daniel Ence
>>>>>>>>>>>>> Graduate Student
>>>>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>>>>> University of Utah
>>>>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>>>>> ________________________________________
>>>>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>>>  Kudtarkar
>>>>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>>>>> Also, are there any other parameters that are required when
>>>>>>> filtering
>>>>>>>>>>>>> based on AED score?
>>>>>>>>>>>>>  Hello Carson,
>>>>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>>>>> models
>>>>>>>>>>>>> at
>>>>>>>>>>>>> specific AED score.
>>>>>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>>>>>> to
>>>>>>>>>>>>> parameters
>>>>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>> genes
>>>>>>>>>>>>> gff3
>>>>>>>>>>>>>  file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>>threshold?
>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>>>>>> 1
>>>>>>>>>>>>>  is
>>>>>>>>>>>>> worst
>>>>>>>>>>>>>  as
>>>>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>>>>> parameter
>>>>>>>>>>>>> to
>>>>>>>>>>>>>  require better matching to the evidence by setting it closer
>>>>>>> to
>>>>>>>>>>>>> 0.
>>>>>>>>>>>>> You
>>>>>>>>>>>>>  can
>>>>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>>>>> your
>>>>>>>>>>>>> calls
>>>>>>>>>>>>> may
>>>>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>>>>  --Carson
>>>>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>> Dear Maker community,
>>>>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>  based
>>>>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>>>>Augustus
>>>>>>> predictions, followed by boot-strapping. I would typically expect
>>>>>>> 20-30K
>>>>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>  indicating
>>>>>>>>>>>>>  too
>>>>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>>>>> predication/script to retain predictions with AED score 1 and
>>>>>>>>>>>>> if
>>>>>>>>>>>>> yes
>>>>>>>>>>>>> how
>>>>>>>>>>>>> to go about this?
>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>> -l
>>>>>>>>>>>>> ab
>>>>>>>>>>>>> .o
>>>>>>>>>>>>> rg
>>>>>>>>>>>>>  --
>>>>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>>-l
>>>>>>>>>>>>>a
>>>>>>> b.
>>>>>>>>>>>>> or
>>>>>>>>>>>>> g
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>>-l
>>>>>>>>>>>>>a
>>>>>>> b.
>>>>>>>>>>>>> or
>>>>>>>>>>>>> g
>>>>>>>>>>>>>  _______________________________________________
>>>>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>>>>>
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>>-l
>>>>>>>>>>>>>ab
>>>>>>> .o
>>>>>>>>>>>>> rg
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>>
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>>>>
>>>>
>>>>
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>>>
>>>
>>>
>>>
>>
>>
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From carsonhh at gmail.com  Fri Dec 14 14:17:55 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 14 Dec 2012 16:17:55 -0500
Subject: [maker-devel] AED score
In-Reply-To: <4575.131.215.15.234.1355437013.squirrel@webmail.caltech.edu>
Message-ID: <CCF100EF.170E7%carsonhh@gmail.com>

You can either train with cegma first and then train a second time with
the protein2genome calls, or combine the cegma and protein2genome ZFF
files (from maker2zff and cegma2zff), then use that one file to generate
the training data for augustus.  Augustus allows you to keep training, so
rather than training a new species each time, you can specify an existing
species you trained before, and then refine the existing model using the
additional training data.

--Carson



On 12-12-13 5:16 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Carson,
>
>Could you please advice how to combine results from protein2genome
>derived models and cegma based training to be provided as training species
>for augustus or are theses supposed to be run as separate maker2 run(i.e.
>run maker2 with training set from protein2genome first followed by
>cegma-based training set)
>
>Thanks and regards,
>Parul
>
>> Thanks Parul.  If you need any more help, just let us know.
>>
>> --Carson
>>
>>
>>
>> On 12-12-10 10:28 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>
>>>Dear Carson, Thanks a lot for detailed explanation and all the help with
>>>running and understanding maker2.
>>>
>>>
>>>> Yes.  Lamprey is not a good match for sea urchin.  When training
>>>>Augusuts
>>>> you can sometimes use other genomes as starting points and let
>>>>Augustus
>>>> then modify that species to match the models you provided, which can
>>>>be
>>>> better than de novo training under certain circumstances. But given
>>>>sea
>>>> urchin's evolutionary distance from all the other species bundled with
>>>> augustus, its probably not a good starting point.  So protein2genome
>>>> derived models and cegma based training are probably your best
>>>>options.
>>>>
>>>> --Carson
>>>>
>>>>
>>>> On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>
>>>>>Sorry for not checking this before, just to answer my own question I
>>>>>just
>>>>>found after reading augustus documentation that autoAugTrain.pl should
>>>>>work for generating training dataset for Augustus from using the
>>>>>gene-model hints from first pass run of maker and using
>>>>>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script
>>>>> to
>>>>>generate training.gb
>>>>>
>>>>>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>>>>>
>>>>>I believe should work better than using lamprey to train augustus.
>>>>>
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>
>>>>>> Dear Carson,
>>>>>>
>>>>>> Thanks for detailed explanation and help. Now we know the exact
>>>>>>parameters
>>>>>> that should help us with generating good gene-model.
>>>>>>
>>>>>> The genome for which we are working on gene predictions is
>>>>>> Echinoderm(sea-urchin). lamprey was the closest organism for
>>>>>>training
>>>>>> augustus that I could find. A quick question for training augustus,
>>>>>>there
>>>>>> is augustus_species option how would you go from training data
>>>>>> generated
>>>>>> by zff2augustus_gbk.pl > train.gb as specified here
>>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>>>>>> generating the species folder that can be specified to
>>>>>>augustus_species
>>>>>> option.
>>>>>>
>>>>>> The average expected gene-length in our case is ~15kb.
>>>>>> We also have a good repeat library for our genome.
>>>>>>
>>>>>> Thanks and regards,
>>>>>> Parul Kudtarkar
>>>>>>
>>>>>>> For step 2 and 3, use lamprey rather than human in augustus.  For
>>>>>>>some
>>>>>>> reason the current version of augustus doesn't diplay it as an
>>>>>>> option
>>>>>>> for
>>>>>>> the species help menu (so I didn't see it), but it's there in
>>>>>>> ?/augustus/config/species/lamprey
>>>>>>>
>>>>>>> For any additional training, make copies into
>>>>>>> ?/augustus/config/species/lamprey2 and
>>>>>>> ?/augustus/config/species/lamprey3
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> From:  Carson Holt <carsonhh at gmail.com>
>>>>>>> Date:  Friday, 7 December, 2012 10:22 AM
>>>>>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>>>>>> "maker-devel at yandell-lab.org"
>>>>>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>>>>>> Subject:  Re: [maker-devel] AED score
>>>>>>>
>>>>>>> Just to add to Daniels comments.
>>>>>>>
>>>>>>> Things to change in step 1:
>>>>>>>> protein= <just try and add more protein evidence in general>
>>>>>>>> est2genome=0
>>>>>>>> protein2genome=1
>>>>>>>> split_hit=20000
>>>>>>>> min_contig=50000
>>>>>>>
>>>>>>> Reasoning:
>>>>>>>> Your ESTs are very short especially if this is a lamprey species
>>>>>>>> which
>>>>>>>> have
>>>>>>>> very long introns and really short exons.  In lamprey (i.e.
>>>>>>>> Petromyzon
>>>>>>>> marinus), genes tend to be very long (remember gene lengths
>>>>>>>>include
>>>>>>>> introns
>>>>>>>> and UTR and is not just the size of the coding sequence), so
>>>>>>>> contigs
>>>>>>>> shorter
>>>>>>>> than 50kb are useless for training as you are unlikely to get nice
>>>>>>>> complete
>>>>>>>> gene models on those.  Also lampreys have very long introns, so
>>>>>>>>you
>>>>>>>> have
>>>>>>>> to
>>>>>>>> allow for bigger introns in alignments (split_hit parameter).
>>>>>>>> Finally
>>>>>>>> add as
>>>>>>>> much protein evidence from as many sources as possible.  Your
>>>>>>>>maker
>>>>>>>> training
>>>>>>>> run will take a long time as proteins take forever to align, but
>>>>>>>> because
>>>>>>>> of
>>>>>>>> the evolutionary distance of lamprey from everything else and the
>>>>>>>>short
>>>>>>>> exon
>>>>>>>> structure of its genome, very little aligns directly to its genome
>>>>>>>>from
>>>>>>>> other
>>>>>>>> deuterstome and vertebrate species.  I'm assuming this is a
>>>>>>>>lamprey
>>>>>>>> species
>>>>>>>> because of what you said about the  augustus species file you are
>>>>>>>> using.
>>>>>>>> Really the only thing closely related to lampreys unfortunately
>>>>>>>>are
>>>>>>>> other
>>>>>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related
>>>>>>>> to
>>>>>>>> lamprey
>>>>>>>> (while they branch closely together on the tree of life, there are
>>>>>>>> too
>>>>>>>> many
>>>>>>>> years since the last common ancestor).  So while they may have
>>>>>>>> similar
>>>>>>>> issues
>>>>>>>> related to annotation (long introns and short exons etc.) they
>>>>>>>>will
>>>>>>>>not
>>>>>>>> really
>>>>>>>> match that well for the gene predictor or even protein alignments.
>>>>>>>
>>>>>>> Additional note:
>>>>>>>> I have training files for the lamprey species Petromyzon marinus
>>>>>>>> for
>>>>>>>> both
>>>>>>>> Augustus and SNAP that I could share with you in a few week, when
>>>>>>>>the
>>>>>>>> genome
>>>>>>>> publication is is released.  But before that happens, new gene
>>>>>>>>models
>>>>>>>> will be
>>>>>>>> available  through the UCSC browser (hopefully within a couple of
>>>>>>>> weeks), and
>>>>>>>> gene models are already available through ENSEMBL.  Get those
>>>>>>>>protein
>>>>>>>> files
>>>>>>>> for training, it may be a big help for you.  If you want early
>>>>>>>>access
>>>>>>>> to
>>>>>>>> the
>>>>>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>>>>>request
>>>>>>>> it
>>>>>>>> from Weiming Li at Michigan State University (the head of that
>>>>>>>>genome
>>>>>>>> project).
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Things to change in step 2:
>>>>>>>> Optimally you would be doing de novo training using mRNAseq
>>>>>>>> results,
>>>>>>>> but
>>>>>>>> with
>>>>>>>> on;ly sparse protein alignments and such a fragmented assembly,
>>>>>>>>you
>>>>>>>>are
>>>>>>>> probably better off just trying to adapt the human HMM files.
>>>>>>>>They
>>>>>>>> won't
>>>>>>>> match that well, but you probably won't have the evidence for De
>>>>>>>>Novo
>>>>>>>> training.  First make a copy of the augustus human species
>>>>>>>> directory
>>>>>>>> and
>>>>>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>>>>>> ?/augustus/config/species/lamprey).  Use it as the base species
>>>>>>>>for
>>>>>>>> retraining
>>>>>>>> augustus using your new models.  You will have to edit multiple
>>>>>>>>files
>>>>>>>> in
>>>>>>>> the
>>>>>>>> directory after you copy it so that they no longer say human or
>>>>>>>> homo
>>>>>>>> sapiens
>>>>>>>> internally or in the file name.  Use maker2zff to generate the
>>>>>>>>filtered
>>>>>>>> ZFF
>>>>>>>> file for training SNAP, but don't train SNAP.  Rather use the
>>>>>>>> training
>>>>>>>> file to
>>>>>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>>>>>
>>>>>>>> MAKE a backup of the step 1 maker output directory and run step 2
>>>>>>>> in
>>>>>>>> the
>>>>>>>> old
>>>>>>>> step 1 directory (this allows you to change the parameters and
>>>>>>>> reuse
>>>>>>>> files
>>>>>>>> form step 1 so you don't have to recalculate all the protein and
>>>>>>>> EST
>>>>>>>> alignments).  So control files for step 2 are identical to step 1
>>>>>>>> except
>>>>>>>> for
>>>>>>>> these parameters.
>>>>>>>>
>>>>>>>> protein2genome=0
>>>>>>>> augustus_species=lamprey
>>>>>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>>>>>
>>>>>>>> Don't both training SNAP here as you probably won't have enough
>>>>>>>> data
>>>>>>>> and
>>>>>>>> you
>>>>>>>> assembly is too fragmented for it to work well, so just stick to
>>>>>>>> augustus.
>>>>>>>> Try SNAP if you want just to see how well it works.  Manually open
>>>>>>>>up
>>>>>>>> the
>>>>>>>> largest contigs in a viewer to look at the models produced from
>>>>>>>>the
>>>>>>>> MAKER run
>>>>>>>> to see if they look reasonable (this will also help you decide
>>>>>>>> whether
>>>>>>>> to keep
>>>>>>>> SNAP).
>>>>>>>>
>>>>>>>
>>>>>>> Things to change in step 3:
>>>>>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.
>>>>>>>> But
>>>>>>>> make
>>>>>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>>>>>> ?/augustus/config/species/lamprey2 (editing all the files and
>>>>>>>>names
>>>>>>>> as
>>>>>>>> you did
>>>>>>>> in step 2). This way you don't loose that training data if you
>>>>>>>>decide
>>>>>>>> to
>>>>>>>> step
>>>>>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>>>>>
>>>>>>>> augustus_species=lamprey2
>>>>>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>>>>>
>>>>>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>>>>>> (This
>>>>>>>> is
>>>>>>>> for file reuse, so the step will run fast).  This must be the
>>>>>>>>exact
>>>>>>>> same
>>>>>>>> step
>>>>>>>> directory as step 2 for the reuse trick to work.
>>>>>>>>
>>>>>>>> Manually review the models and if you are satisfied move to step
>>>>>>>>4.
>>>>>>>> Also note
>>>>>>>> that most parameters including the protein, EST, and repeats
>>>>>>>>should
>>>>>>>>not
>>>>>>>> change
>>>>>>>> from step1-step3, and should not be removed for step 4 either, you
>>>>>>>> can
>>>>>>>> add
>>>>>>>> more evidence, but don't remove evidence (like the repeats).
>>>>>>>>
>>>>>>>>
>>>>>>> Things to change in step 4:
>>>>>>>> For this step, just set min_contig=10000 and rerun MAKER inside
>>>>>>>>the
>>>>>>>> step
>>>>>>>> 3
>>>>>>>> directory to get the smaller contigs annotated.  This should be
>>>>>>>> your
>>>>>>>> final
>>>>>>>> step, although you can try altering other parameters or adding
>>>>>>>>more
>>>>>>>> evidence
>>>>>>>> sources here etc.
>>>>>>>>
>>>>>>>>
>>>>>>> For other things to keep in mind, you should consider taking extra
>>>>>>> time
>>>>>>> to
>>>>>>> build a comprehensive library of repeats for your species, I know
>>>>>>>that
>>>>>>> Petromyzon marinus was virtually unannotatable until we had a very
>>>>>>> deep
>>>>>>> repeat library built for it.  Any repeat library should be used in
>>>>>>>all
>>>>>>> steps.  Also for lamprey, you will expect between 20,000-30,000
>>>>>>> genes
>>>>>>> both
>>>>>>> because of your assemblies fragmentation and because of some
>>>>>>>ancestral
>>>>>>> genome duplication.  Also be aware that lampreys appear to undergo
>>>>>>> programmed genome loss in somatic tissues, so any gene count you
>>>>>>>get
>>>>>>> is
>>>>>>> only
>>>>>>> going to represent a maximum of 75-80% of all genes unless the
>>>>>>> assembly
>>>>>>> is
>>>>>>> derived from germline tissue.
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>>
>>>>>>>
>>>>>>>>
>>>>>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>>
>>>>>>>> Hi Parul,
>>>>>>>>
>>>>>>>> In step one, if protein2genome isn't turned on, then the protein
>>>>>>>> alignments
>>>>>>>> wont be used to generate gene models. Carson said before to use
>>>>>>>> protein2genome
>>>>>>>> to generate gene models for your trainings set, but you should
>>>>>>>>know
>>>>>>>> that
>>>>>>>> those
>>>>>>>> data aren't being used right now.
>>>>>>>>
>>>>>>>> In step 2, you can include the est and protein evidence that you
>>>>>>>>used
>>>>>>>> in
>>>>>>>> step
>>>>>>>> one, and the ab-initio predictors will takes those data as hints
>>>>>>>>to
>>>>>>>> guide
>>>>>>>> their predictions. Also, are you reannotating human here? I'm just
>>>>>>>> wondering
>>>>>>>> why the snap file is called Pult, but the augustus species model
>>>>>>>>is
>>>>>>>> human.
>>>>>>>> Also, I think you should include the same masking files from step
>>>>>>>> 1,
>>>>>>>> otherwise
>>>>>>>> the ab-initio predictors will be predicting on the unmasked
>>>>>>>> sequence
>>>>>>>> which
>>>>>>>> will give you many spurious predictions.
>>>>>>>>
>>>>>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>>>>>control
>>>>>>>> file
>>>>>>>> you sent for step 3 will just pass-through all of the data from
>>>>>>>>before.
>>>>>>>>
>>>>>>>> In step 4, I think what you'll get is pretty close to what you
>>>>>>>> already
>>>>>>>> had in
>>>>>>>> step 3. The gene models from step 3 are already based on the est
>>>>>>>> and
>>>>>>>> protein
>>>>>>>> data from step 1, so without giving any different evidence or
>>>>>>>>ab-initio
>>>>>>>> predictors, I think that you will just get the same gene models
>>>>>>>> that
>>>>>>>> you
>>>>>>>> got
>>>>>>>> from step 3. Those gene models are what you should be using to
>>>>>>>> train
>>>>>>>> snap.
>>>>>>>> Also, is this the same genome as in the other steps? The genome
>>>>>>>> file
>>>>>>>> here is
>>>>>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>>>>>
>>>>>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>>>>>create
>>>>>>>> models. If you don't give any evidence (EST or protein) maker will
>>>>>>>> not
>>>>>>>> annotate any gene models. You have also changed the augustus
>>>>>>>> species
>>>>>>>> model in
>>>>>>>> this step, but I don't know what you've gained by going from one
>>>>>>>> species
>>>>>>>> to
>>>>>>>> another. You should be training augustus with the gene models and
>>>>>>>> then
>>>>>>>> creating a new species model in augustus. As I understand it, the
>>>>>>>> filter
>>>>>>>> only
>>>>>>>> operates on gene models, not ab-initio predictions or alignments,
>>>>>>>> so
>>>>>>>>it
>>>>>>>> probably isn't doing anything the way you have it set.
>>>>>>>>
>>>>>>>> Step 6. I think step 5 and 6 should be combined. I don't know what
>>>>>>>> you
>>>>>>>> mean by
>>>>>>>> boot-strapping here too.
>>>>>>>>
>>>>>>>> Hopefully that clears up some of the confusion with how maker
>>>>>>>> works.
>>>>>>>> Carson
>>>>>>>> will probably have a lot of suggestions too.
>>>>>>>>
>>>>>>>> Thanks,
>>>>>>>> Daniel
>>>>>>>>
>>>>>>>> Daniel Ence
>>>>>>>> Graduate Student
>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>> University of Utah
>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>> ________________________________________
>>>>>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>>>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>>>>>> To: carsonhh at gmail.com
>>>>>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>
>>>>>>>> Hi Carson,
>>>>>>>>
>>>>>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>>>>>> 30,000
>>>>>>>> genes.
>>>>>>>> Here are the step
>>>>>>>> Step1. EST and proteins are used to predict gene-models. the
>>>>>>>> resulting
>>>>>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>>>>>> turned
>>>>>>>> ON
>>>>>>>> Step2. Augustus and SNAP is used to predict genes.
>>>>>>>> Step3. The results are re-annoated(boot-strap)
>>>>>>>> Step4. EST and proteins are used to predict gene-models. The gff
>>>>>>>>file
>>>>>>>> from
>>>>>>>> step3. is used as model_gff. The resulting file is used as
>>>>>>>>training
>>>>>>>> data-set for SNAP in step2
>>>>>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set
>>>>>>>>to
>>>>>>>>0.5
>>>>>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5
>>>>>>>> and
>>>>>>>> contig_size to 10kb
>>>>>>>>
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>
>>>>>>>> I have attached the configuration file for each step.
>>>>>>>>>  Your output has no genes.  They've all been filtered out.  The
>>>>>>>>>gene
>>>>>>>> predictions are left for reference purposes, but there are no gene
>>>>>>>> models
>>>>>>>>>  in the file.  You need to look at the type columns in the GFF3
>>>>>>>>>file
>>>>>>>>> -->
>>>>>>>> match/match_part features are evidence and reference data but not
>>>>>>>> models.
>>>>>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if
>>>>>>>>> you
>>>>>>>>> just
>>>>>>>> want gene models in your file you can use the gff3_merge script
>>>>>>>> with
>>>>>>>> the
>>>>>>>> -g option, and it will only print out the gene models.
>>>>>>>>>  I think you may be misinterpreting what is happening at
>>>>>>>>>different
>>>>>>>>> steps,
>>>>>>>> as well as how to read the result files.  Could you give me a
>>>>>>>> detailed
>>>>>>>> explanation of what you expect to get back together with your
>>>>>>>>control
>>>>>>>> files and I can walk you through the configuration, and indicate
>>>>>>>>what
>>>>>>>> to
>>>>>>>> expect.  Also what was the report like from CEGMA. Could you
>>>>>>>> include
>>>>>>>> the
>>>>>>>> report file that shows how complete your genome is and how
>>>>>>>>fragmented
>>>>>>>> it
>>>>>>>> is?
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>>> Dear Carson,
>>>>>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>>>>>> Though for previous step(ab-intio gene predictions keep_preds
>>>>>>>>>>was
>>>>>>>>>>set
>>>>>>>>>> to
>>>>>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>>>>>> Scaffold1_out.gff.
>>>>>>>>>> Please advice.
>>>>>>>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>  You should always get all predictions, but should only get
>>>>>>>>>>>models
>>>>>>>> (match/match_part) with AED scores less than 0.5.  You should
>>>>>>>>never
>>>>>>>>get
>>>>>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you
>>>>>>>>>>> have
>>>>>>>> keep_preds set.
>>>>>>>>>>>  Do you have keeps_preds set or gene models with AED values
>>>>>>>>>>> above
>>>>>>>>>>> your
>>>>>>>> threshold (not match/match_part features)?  If the first one is
>>>>>>>>the
>>>>>>>>>>> case,
>>>>>>>>>>>  just set it to 0.  If the second one in the case, could you
>>>>>>>>>>> send
>>>>>>>>>>>me
>>>>>>>> example GFF3?
>>>>>>>>>>>  Thanks,
>>>>>>>>>>>  Carson
>>>>>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>>> Dear Carson,
>>>>>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>>>>>> short
>>>>>>>>>>>>  ESTs.
>>>>>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>>>>>> prediction(used as training dataset)and abinitio
>>>>>>>>>>>> gene-prediction).
>>>>>>>> Here
>>>>>>>>>>>> are the control parameters I am using with AED score set to
>>>>>>>>>>>> 0.5,
>>>>>>>>>>>>  however
>>>>>>>>>>>>  I
>>>>>>>>>>>> get predictions that includes the ones with AED score of 1.00
>>>>>>>>>>>> in
>>>>>>>>>>>>  resulting
>>>>>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3
>>>>>>>>>>>> of
>>>>>>>>>>>>  initial
>>>>>>>>>>>> gff3 file.
>>>>>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default
>>>>>>>>>>>>is
>>>>>>>>>>>>  eukaryotic
>>>>>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this
>>>>>>>>>>>> gff3
>>>>>>>>>>>> file
>>>>>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 =
>>>>>>>>>>>> yes,
>>>>>>>>>>>> 0
>>>>>>>>>>>> =
>>>>>>>> no
>>>>>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes,
>>>>>>>>>>>> 0
>>>>>>>>>>>> =
>>>>>>>>>>>> no
>>>>>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes,
>>>>>>>>0
>>>>>>>>=
>>>>>>>>>>>>  no
>>>>>>>>>>>> #-----MAKER Behavior Options
>>>>>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed
>>>>>>>>>>>> (bound
>>>>>>>>>>>> by
>>>>>>>> 0
>>>>>>>>>>>> and 1)
>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to
>>>>>>>>>>>>>be
>>>>>>>>>>>>> partial
>>>>>>>>>>>>> at
>>>>>>>>>>>>>  best.  You should seriously consider using mRNAseq to
>>>>>>>>>>>>>capture
>>>>>>>>>>>>> those
>>>>>>>> by
>>>>>>>>>>>>>  using maker's est_gff option to pass in results from
>>>>>>>>>>>>> cufflinks
>>>>>>>>>>>>>or
>>>>>>>>>>>>> trinity.
>>>>>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb
>>>>>>>>>>>>>in
>>>>>>>> size,
>>>>>>>>>>>>> just
>>>>>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>>>>>> maker_opts.ctl file.
>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>>>>>with
>>>>>>>> N50
>>>>>>>>>>>>>>  of
>>>>>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>>>>>> reason
>>>>>>>>>>>>>>  when
>>>>>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>>>>>> predicted
>>>>>>>> despite the model_gff file has few genes with scores less than
>>>>>>>> 0.75?
>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>>>>>> contig.
>>>>>>>>>>>>>> First
>>>>>>>>>>>>>>  it seems to be repeat rich with a very low gene density.
>>>>>>>>>>>>>> You
>>>>>>>>>>>>>> also
>>>>>>>>>>>>>> have
>>>>>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>>>>>> getting
>>>>>>>> many
>>>>>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>>>>>> models
>>>>>>>> that
>>>>>>>>>>>>>> are
>>>>>>>>>>>>>>  more than likely false positives or at the very least just
>>>>>>>>>>>>>>a
>>>>>>>>>>>>>> piece
>>>>>>>>>>>>>> of
>>>>>>>>>>>>>> a
>>>>>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>>>>>reason
>>>>>>>>>>>>>>  unless
>>>>>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).
>>>>>>>>>>>>>> Your
>>>>>>>>>>>>>>  protein
>>>>>>>>>>>>>> alignments also seem to be few and far between.  You
>>>>>>>>>>>>>>probably
>>>>>>>>>>>>>> need
>>>>>>>> to
>>>>>>>>>>>>>> add
>>>>>>>>>>>>>>  more proteins from a couple of related species, and you
>>>>>>>>>>>>>> might
>>>>>>>> consider
>>>>>>>>>>>>>> using protein2genome rather than est2genome as a predictor
>>>>>>>>>>>>>>if
>>>>>>>>>>>>>>you
>>>>>>>> are
>>>>>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>>>>>> produced
>>>>>>>> models
>>>>>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>>>>>with
>>>>>>>> the
>>>>>>>>>>>>>> AED_threshold with such limited protein support does create
>>>>>>>>>>>>>> an
>>>>>>>> artificial
>>>>>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>>>>>  How many contigs do you have in total and what is the N50
>>>>>>>>>>>>>> value
>>>>>>>> for
>>>>>>>>>>>>>> the
>>>>>>>>>>>>>> assembly? If you have a large number of very short contigs,
>>>>>>>>>>>>>>you
>>>>>>>>>>>>>> will
>>>>>>>>>>>>>>  get
>>>>>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>>>>>> contigs
>>>>>>>>>>>>>>  and
>>>>>>>>>>>>>> many contigs tend t be subtle rearrangements of other
>>>>>>>>>>>>>>contigs
>>>>>>>>>>>>>> just
>>>>>>>> assembled in a slightly different way (so you can get bits and
>>>>>>>> pieces
>>>>>>>>>>>>>>  of
>>>>>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>>>>>  confounding
>>>>>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>>>>>> would
>>>>>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>>>>>  completeness
>>>>>>>>>>>>>> as
>>>>>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>>>>>> statistics
>>>>>>>>>>>>>> produced
>>>>>>>>>>>>>>  is a percent of genes that are found complete (end to end)
>>>>>>>>>>>>>> vs
>>>>>>>> those
>>>>>>>>>>>>>>  that
>>>>>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend
>>>>>>>>>>>>>>to
>>>>>>>>>>>>>> be
>>>>>>>> shorter
>>>>>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>>>>>CEGMA
>>>>>>>> gives
>>>>>>>>>>>>>>  a
>>>>>>>>>>>>>> high partial percentage and a low complete percentage, then
>>>>>>>>>>>>>> this
>>>>>>>>>>>>>>  pattern
>>>>>>>>>>>>>> can be expected to be even more exaggerated for other genes
>>>>>>>>>>>>>> in
>>>>>>>>>>>>>> the
>>>>>>>> genome.
>>>>>>>>>>>>>>  If your genome is highly fragmented or proteins do not
>>>>>>>>>>>>>>align
>>>>>>>>>>>>>> well
>>>>>>>> then
>>>>>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>>>>>genomes
>>>>>>>> end
>>>>>>>>>>>>>>  up
>>>>>>>>>>>>>> having extremely fragmented assemblies (on the order of
>>>>>>>>>>>>>>100,000
>>>>>>>> contigs),
>>>>>>>>>>>>>>  and if they are distantly related to other annotated
>>>>>>>>>>>>>>species
>>>>>>>>>>>>>>few
>>>>>>>>>>>>>> proteins
>>>>>>>>>>>>>>  may align to the contigs because the introns in the
>>>>>>>>>>>>>>alignments
>>>>>>>> tend
>>>>>>>>>>>>>>  to
>>>>>>>>>>>>>> be
>>>>>>>>>>>>>>  so long and exons so short that it pushes down the
>>>>>>>>>>>>>> significance
>>>>>>>> scores
>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if
>>>>>>>>>>>>>> not
>>>>>>>> only
>>>>>>>>>>>>>>  way
>>>>>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>>>>score.
>>>>>>>> The
>>>>>>>>>>>>>> input gff3 file was provided to option model_pred(see
>>>>>>>>>>>>>> attached
>>>>>>>>>>>>>> file
>>>>>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>>>>>  least
>>>>>>>>>>>>>>  5
>>>>>>>>>>>>>> genes with AED score less than 0.75. However there were no
>>>>>>>>>>>>>> genes
>>>>>>>>>>>>>>  predicted
>>>>>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have
>>>>>>>>>>>>>> also
>>>>>>>>>>>>>> attached
>>>>>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if
>>>>>>>>>>>>>>you
>>>>>>>>>>>>>> just
>>>>>>>>>>>>>> want
>>>>>>>>>>>>>>  to restrict final gene models to close matches directly
>>>>>>>>>>>>>>within
>>>>>>>>>>>>>> maker.
>>>>>>>>>>>>>> On
>>>>>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>>>>>> training
>>>>>>>>>>>>>>  gene
>>>>>>>>>>>>>> predictors, use the maker2zff script for generating a
>>>>>>>>>>>>>> filtered
>>>>>>>>>>>>>>  dataset
>>>>>>>>>>>>>> for
>>>>>>>>>>>>>>  SNAP training.  There are a number of filters available.
>>>>>>>>>>>>>> Just
>>>>>>>> call
>>>>>>>>>>>>>>  the
>>>>>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence"
>>>>>>>>>>>>>><dence at genetics.utah.edu>
>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>> Hi Parul,
>>>>>>>>>>>>>> I think the way you described (with the maker_opts.ctl file)
>>>>>>>>>>>>>>is
>>>>>>>> how
>>>>>>>>>>>>>> you
>>>>>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>>>>>> Daniel
>>>>>>>>>>>>>> Daniel Ence
>>>>>>>>>>>>>> Graduate Student
>>>>>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>>>>>> University of Utah
>>>>>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>>>>>> ________________________________________
>>>>>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>>>>  Kudtarkar
>>>>>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>>>>>> Also, are there any other parameters that are required when
>>>>>>>> filtering
>>>>>>>>>>>>>> based on AED score?
>>>>>>>>>>>>>>  Hello Carson,
>>>>>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>>>>>> models
>>>>>>>>>>>>>> at
>>>>>>>>>>>>>> specific AED score.
>>>>>>>>>>>>>>  Alternatively if I were to do this within maker with
>>>>>>>>>>>>>>regards
>>>>>>>> to
>>>>>>>>>>>>>> parameters
>>>>>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>>> genes
>>>>>>>>>>>>>> gff3
>>>>>>>>>>>>>>  file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>>>threshold?
>>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best
>>>>>>>>>>>>>>and
>>>>>>>> 1
>>>>>>>>>>>>>>  is
>>>>>>>>>>>>>> worst
>>>>>>>>>>>>>>  as
>>>>>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>>>>>> parameter
>>>>>>>>>>>>>> to
>>>>>>>>>>>>>>  require better matching to the evidence by setting it
>>>>>>>>>>>>>>closer
>>>>>>>> to
>>>>>>>>>>>>>> 0.
>>>>>>>>>>>>>> You
>>>>>>>>>>>>>>  can
>>>>>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>>>>>> your
>>>>>>>>>>>>>> calls
>>>>>>>>>>>>>> may
>>>>>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>>>>>  --Carson
>>>>>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>> Dear Maker community,
>>>>>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>>  based
>>>>>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>>>>>Augustus
>>>>>>>> predictions, followed by boot-strapping. I would typically expect
>>>>>>>> 20-30K
>>>>>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>>  indicating
>>>>>>>>>>>>>>  too
>>>>>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>>>>>> predication/script to retain predictions with AED score 1
>>>>>>>>>>>>>>and
>>>>>>>>>>>>>> if
>>>>>>>>>>>>>> yes
>>>>>>>>>>>>>> how
>>>>>>>>>>>>>> to go about this?
>>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yande
>>>>>>>>>>>>>>ll
>>>>>>>> -l
>>>>>>>>>>>>>> ab
>>>>>>>>>>>>>> .o
>>>>>>>>>>>>>> rg
>>>>>>>>>>>>>>  --
>>>>>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yande
>>>>>>>>>>>>>>ll
>>>>>>>>>>>>>>-l
>>>>>>>>>>>>>>a
>>>>>>>> b.
>>>>>>>>>>>>>> or
>>>>>>>>>>>>>> g
>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yande
>>>>>>>>>>>>>>ll
>>>>>>>>>>>>>>-l
>>>>>>>>>>>>>>a
>>>>>>>> b.
>>>>>>>>>>>>>> or
>>>>>>>>>>>>>> g
>>>>>>>>>>>>>>  _______________________________________________
>>>>>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yande
>>>>>>>>>>>>>>ll
>>>>>>>>>>>>>>-l
>>>>>>>>>>>>>>ab
>>>>>>>> .o
>>>>>>>>>>>>>> rg
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>>
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>>>>
>>>>>
>>>>>
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>>>
>>
>>
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>





From indu2287 at gmail.com  Wed Dec 19 22:33:33 2012
From: indu2287 at gmail.com (indu khatri)
Date: Thu, 20 Dec 2012 11:03:33 +0530
Subject: [maker-devel] query
Message-ID: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>

 Hello Maker-devel
    Thanks for adding me to the list. I am new to this field. I have a
query regarding maker annotation.
    I have assembled a fungal Genome with 1590 contigs and was trying to
    annotate it using MAKER pipeline. I only have paired end WGS sequence
from
    Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
    any transcriptome data. I am using ESTs of a closer species for
validation
    and similarly the protein sequences. I have started annotation but the
    problem is the pipeline gets stuck to the first contig on blastx step
and
    doesn't move further. I could not make out the problem. Can you please
help
    me out of this.

Thanks and regards

-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India
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From dence at genetics.utah.edu  Thu Dec 20 09:53:59 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Thu, 20 Dec 2012 16:53:59 +0000
Subject: [maker-devel] query
In-Reply-To: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49939@mxb2.hg.genetics.utah.edu>

Hi Indu, Can you send you some of the error output that maker is printing? Blastx is used at a couple of different steps in maker's pipeline, so it is hard to tell without more information. You might also think about using the swiss prot database as a source for protein sequences.

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: maker-devel-bounces at yandell-lab.org [maker-devel-bounces at yandell-lab.org] on behalf of indu khatri [indu2287 at gmail.com]
Sent: Wednesday, December 19, 2012 10:33 PM
To: maker-devel at yandell-lab.org
Subject: [maker-devel] query

 Hello Maker-devel
    Thanks for adding me to the list. I am new to this field. I have a query regarding maker annotation.
    I have assembled a fungal Genome with 1590 contigs and was trying to
    annotate it using MAKER pipeline. I only have paired end WGS sequence from
    Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
    any transcriptome data. I am using ESTs of a closer species for validation
    and similarly the protein sequences. I have started annotation but the
    problem is the pipeline gets stuck to the first contig on blastx step and
    doesn't move further. I could not make out the problem. Can you please help
    me out of this.

Thanks and regards

--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

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From barry.moore at genetics.utah.edu  Thu Dec 20 10:20:31 2012
From: barry.moore at genetics.utah.edu (Barry Moore)
Date: Thu, 20 Dec 2012 10:20:31 -0700
Subject: [maker-devel] query
In-Reply-To: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
Message-ID: <15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>

Hi Indu,

The error output as Daniel suggested would be great and also a bit more detail on the problem.  Is it stalled on a long contig - how long?  How long has it been stalled for?  How many cpus are you running?  Are you running under MPI?  How big is the protein evidence file?  If you're using the altest function for your ESTs then it's running tblastx which is up to 10X slower than blastn with regular ESTs, is it possible that you're stuck on tblastx?

Finally, it can help if you isolate the problem a bit.  Can you run successfully on any of your contigs by running single contigs in your fasta file?  If it's stalled on a large contig, iteratively cut it in half and see if the problem isolates to one part of the contig.

B

On Dec 19, 2012, at 10:33 PM, indu khatri wrote:

>  Hello Maker-devel
>     Thanks for adding me to the list. I am new to this field. I have a query regarding maker annotation.
>     I have assembled a fungal Genome with 1590 contigs and was trying to
>     annotate it using MAKER pipeline. I only have paired end WGS sequence from
>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
>     any transcriptome data. I am using ESTs of a closer species for validation
>     and similarly the protein sequences. I have started annotation but the
>     problem is the pipeline gets stuck to the first contig on blastx step and
>     doesn't move further. I could not make out the problem. Can you please help
>     me out of this.
> 
> Thanks and regards
> 
> -- 
> Indu Khatri
> PhD Research Fellow,
> C/o Dr. Srikrishna Subramanian
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
> 
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

Barry Moore
Research Scientist
Dept. of Human Genetics
University of Utah
Salt Lake City, UT 84112
--------------------------------------------
(801) 585-3543




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From ranjani at uga.edu  Thu Dec 20 10:21:45 2012
From: ranjani at uga.edu (Sivaranjani Namasivayam)
Date: Thu, 20 Dec 2012 17:21:45 +0000
Subject: [maker-devel] MAKER annotations
Message-ID: <A21F03FBB429334EB4D450CC75E8CBF34B947EB4@CH1PRD0210MB384.namprd02.prod.outlook.com>

Hi,

I have a query regarding MAKER predictions. I made a a first round of predictions with RNAseq data from 454 and Illumina as EST evidence and proteins sequences from related organisms as proteins evidence. I also used augustus trained on a closely related organism as the ab-initio gene predictor.
I got ~4000 maker annotations (I expect around ~10,000 genes)

I used the annotations with AED score of 0 to train SNAP and used the HMM when retraining MAKER. This time I got ~8,000 genes but when I examined some annotations they appeared to be have worsened when compared to the initial predictions: that is, genes were getting split, UTRs were not annotated and the original predictions were modified but not for better.

Would you have any suggestions on how I can improve the annotations.

Also, is there a way to tell MAKER to produce gene models for all the cufflinks assembled transcripts(that is, for the data set I provide as EST evidence).

Thanks,
Ranjani
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From carsonhh at gmail.com  Thu Dec 20 11:16:42 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 20 Dec 2012 13:16:42 -0500
Subject: [maker-devel] MAKER annotations
In-Reply-To: <A21F03FBB429334EB4D450CC75E8CBF34B947EB4@CH1PRD0210MB384.namprd02.prod.outlook.com>
Message-ID: <CCF8B883.1724D%carsonhh@gmail.com>

Don't use an AED filter of 0.  It's too strict and will introduces certain
artifacts like partial genes.  Lower than 0.5 is probably sufficient for
training.  Also if in your first round you use Augustus, and the second
round you used SNAP instead, you may get poorer annotations because Augustus
is performing better than SNAP.  SNAP might need more training as well,
especially if the low AED filter introduced partial gene artifacts.    What
kind of organism are you annotating?

--Carson


From:  Sivaranjani Namasivayam <ranjani at uga.edu>
Date:  Thursday, 20 December, 2012 12:21 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  [maker-devel] MAKER annotations

Hi,

I have a query regarding MAKER predictions. I made a a first round of
predictions with RNAseq data from 454 and Illumina as EST evidence and
proteins sequences from related organisms as proteins evidence. I also used
augustus trained on a closely related organism as the ab-initio gene
predictor.
I got ~4000 maker annotations (I expect around ~10,000 genes)

I used the annotations with AED score of 0 to train SNAP and used the HMM
when retraining MAKER. This time I got ~8,000 genes but when I examined some
annotations they appeared to be have worsened when compared to the initial
predictions: that is, genes were getting split, UTRs were not annotated and
the original predictions were modified but not for better.

Would you have any suggestions on how I can improve the annotations.

Also, is there a way to tell MAKER to produce gene models for all the
cufflinks assembled transcripts(that is, for the data set I provide as EST
evidence).

Thanks,
Ranjani
_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From indu2287 at gmail.com  Thu Dec 20 12:41:59 2012
From: indu2287 at gmail.com (indu khatri)
Date: Thu, 20 Dec 2012 11:41:59 -0800
Subject: [maker-devel] Fwd:  query
In-Reply-To: <CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
	<15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>
	<CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>
Message-ID: <CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>

Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species
I chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <barry.moore at genetics.utah.edu
> wrote:

> Hi Indu,
>
> The error output as Daniel suggested would be great and also a bit more
> detail on the problem.  Is it stalled on a long contig - how long?  How
> long has it been stalled for?  How many cpus are you running?  Are you
> running under MPI?  How big is the protein evidence file?  If you're using
> the altest function for your ESTs then it's running tblastx which is up to
> 10X slower than blastn with regular ESTs, is it possible that you're stuck
> on tblastx?
>
> Finally, it can help if you isolate the problem a bit.  Can you run
> successfully on any of your contigs by running single contigs in your fasta
> file?  If it's stalled on a large contig, iteratively cut it in half and
> see if the problem isolates to one part of the contig.
>
> B
>
> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
>
>  Hello Maker-devel
>     Thanks for adding me to the list. I am new to this field. I have a
> query regarding maker annotation.
>     I have assembled a fungal Genome with 1590 contigs and was trying to
>     annotate it using MAKER pipeline. I only have paired end WGS sequence
> from
>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont
> have
>     any transcriptome data. I am using ESTs of a closer species for
> validation
>     and similarly the protein sequences. I have started annotation but the
>     problem is the pipeline gets stuck to the first contig on blastx step
> and
>     doesn't move further. I could not make out the problem. Can you please
> help
>     me out of this.
>
> Thanks and regards
>
> --
>
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
> Khatri
> PhD Research Fellow,
> C/o Dr. Srikrishna Subramanian
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
>
>  _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>
>  Barry Moore
> Research Scientist
> Dept. of Human Genetics
> University of Utah
> Salt Lake City, UT 84112
> --------------------------------------------
> (801) 585-3543
>
>
>
>
>


-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India
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From carsonhh at gmail.com  Thu Dec 20 15:04:43 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 20 Dec 2012 17:04:43 -0500
Subject: [maker-devel] MAKER annotations
In-Reply-To: <A21F03FBB429334EB4D450CC75E8CBF34B947ECF@CH1PRD0210MB384.namprd02.prod.outlook.com>
Message-ID: <CCF8F513.172A6%carsonhh@gmail.com>

If your organism is biased toward short genes with few introns, you might
also want to try something like GeneMark.  Not all gene predictors work well
on all kinds of gene structures, so I often will run multiple and then drop
those that perform poorly.

Thanks,
Carson


From:  Sivaranjani Namasivayam <ranjani at uga.edu>
Date:  Thursday, 20 December, 2012 1:33 PM
To:  Carson Holt <carsonhh at gmail.com>
Subject:  RE: [maker-devel] MAKER annotations

I am annotating a Apicomplexan organism.  When I retrained I used both SNAP
and Augustus. I will lower the AED score to 0.5 and check if that improves
the results.
Thanks for suggestion!

Ranjani

From: Carson Holt [carsonhh at gmail.com]
Sent: Thursday, December 20, 2012 1:16 PM
To: Sivaranjani Namasivayam; maker-devel at yandell-lab.org
Subject: Re: [maker-devel] MAKER annotations

Don't use an AED filter of 0.  It's too strict and will introduces certain
artifacts like partial genes.  Lower than 0.5 is probably sufficient for
training.  Also if in your first round you use Augustus, and the second
round you used SNAP instead, you may get poorer annotations because Augustus
is performing better than SNAP.  SNAP might need more training as well,
especially if the low AED filter introduced partial gene artifacts.    What
kind of organism are you annotating?

--Carson


From: Sivaranjani Namasivayam <ranjani at uga.edu>
Date: Thursday, 20 December, 2012 12:21 PM
To: "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject: [maker-devel] MAKER annotations

Hi,

I have a query regarding MAKER predictions. I made a a first round of
predictions with RNAseq data from 454 and Illumina as EST evidence and
proteins sequences from related organisms as proteins evidence. I also used
augustus trained on a closely related organism as the ab-initio gene
predictor.
I got ~4000 maker annotations (I expect around ~10,000 genes)

I used the annotations with AED score of 0 to train SNAP and used the HMM
when retraining MAKER. This time I got ~8,000 genes but when I examined some
annotations they appeared to be have worsened when compared to the initial
predictions: that is, genes were getting split, UTRs were not annotated and
the original predictions were modified but not for better.

Would you have any suggestions on how I can improve the annotations.

Also, is there a way to tell MAKER to produce gene models for all the
cufflinks assembled transcripts(that is, for the data set I provide as EST
evidence).

Thanks,
Ranjani
_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org


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From kapeelc at gmail.com  Thu Dec 20 16:00:10 2012
From: kapeelc at gmail.com (Kapeel Chougule)
Date: Thu, 20 Dec 2012 16:00:10 -0700
Subject: [maker-devel] AED eAED QI scores??
Message-ID: <CA+DOtediwDrsyvibU_B=av=knpeQRxVMjEM8_Xhq_a7rd2+NXQ@mail.gmail.com>

Hello,

I ran MAKER 2.27 using the option pred_stats=1 in the control file. In the
last column of the maker output gff file I have the
following annotation quality measures.

AED:0.41 eAED:0.41 QI:0|0.5|0.4|1|1|1|5|0|278

My understanding is that with AED score 0 your annotations are in prefect
agreement with the evidence data sets and with AED 1,vice versa.

 I would like to know what is the difference between AED against eAED
score. And how do I interpret the QI cloumn?

Thank you,

-- 
*

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719
www.genome.arizona.edu
*
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From dence at genetics.utah.edu  Fri Dec 21 10:08:31 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Fri, 21 Dec 2012 17:08:31 +0000
Subject: [maker-devel] AED eAED QI scores??
In-Reply-To: <CA+DOtediwDrsyvibU_B=av=knpeQRxVMjEM8_Xhq_a7rd2+NXQ@mail.gmail.com>
References: <CA+DOtediwDrsyvibU_B=av=knpeQRxVMjEM8_Xhq_a7rd2+NXQ@mail.gmail.com>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BC2@mxb2.hg.genetics.utah.edu>

Hi Kapeel, the QI columns are explained in the first maker paper (Cantarel and Yandell, Genome Research 2008).

>From pg. 189,

Table 2. Maker quality index summary

Length of the 5 UTR

Fraction of splice sites confirmed by an EST alignment

Fraction of exons that overlap an EST alignment

Fraction of exons that overlap EST or Protein alignments

Fraction of splice sites confirmed by a SNAP prediction

Fraction of exons that overlap a SNAP prediction

Number of exons in the mRNA

Length of the 3 UTR

Length of the protein sequence produced by the mRNA


eAED is the the AED edit distance at an exon level, not base pair level like normal AED.


Thanks,

Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: maker-devel-bounces at yandell-lab.org [maker-devel-bounces at yandell-lab.org] on behalf of Kapeel Chougule [kapeelc at gmail.com]
Sent: Thursday, December 20, 2012 4:00 PM
To: maker-devel at yandell-lab.org
Subject: [maker-devel] AED eAED QI scores??

Hello,

I ran MAKER 2.27 using the option pred_stats=1 in the control file. In the last column of the maker output gff file I have the following annotation quality measures.

AED:0.41 eAED:0.41 QI:0|0.5|0.4|1|1|1|5|0|278

My understanding is that with AED score 0 your annotations are in prefect agreement with the evidence data sets and with AED 1,vice versa.

 I would like to know what is the difference between AED against eAED score. And how do I interpret the QI cloumn?

Thank you,

--

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719
www.genome.arizona.edu<http://www.genome.arizona.edu>
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From dence at genetics.utah.edu  Fri Dec 21 10:23:24 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Fri, 21 Dec 2012 17:23:24 +0000
Subject: [maker-devel] query
In-Reply-To: <CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
	<15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>
	<CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>,
	<CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>

Hi Indu,

I'm going to echo Barry's request for more details about this problem too. Does augustus fail on more than one contig or does it fail repeatedly on the same contig? If its only contig, how big is that contig and is it possibly all masked out by repeatmasker? If you exclude that one contig, do the rest run successfully?  What are you using to mask the repeats in the genome? Which augustus model are you using, and how did you choose that model?

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: indu khatri [indu2287 at gmail.com]
Sent: Thursday, December 20, 2012 12:41 PM
To: maker-devel at yandell-lab.org
Cc: Barry Moore; Daniel Ence
Subject: Fwd: [maker-devel] query


Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species I chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <barry.moore at genetics.utah.edu<mailto:barry.moore at genetics.utah.edu>> wrote:
Hi Indu,

The error output as Daniel suggested would be great and also a bit more detail on the problem.  Is it stalled on a long contig - how long?  How long has it been stalled for?  How many cpus are you running?  Are you running under MPI?  How big is the protein evidence file?  If you're using the altest function for your ESTs then it's running tblastx which is up to 10X slower than blastn with regular ESTs, is it possible that you're stuck on tblastx?

Finally, it can help if you isolate the problem a bit.  Can you run successfully on any of your contigs by running single contigs in your fasta file?  If it's stalled on a large contig, iteratively cut it in half and see if the problem isolates to one part of the contig.

B

On Dec 19, 2012, at 10:33 PM, indu khatri wrote:

 Hello Maker-devel
    Thanks for adding me to the list. I am new to this field. I have a query regarding maker annotation.
    I have assembled a fungal Genome with 1590 contigs and was trying to
    annotate it using MAKER pipeline. I only have paired end WGS sequence from
    Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
    any transcriptome data. I am using ESTs of a closer species for validation
    and similarly the protein sequences. I have started annotation but the
    problem is the pipeline gets stuck to the first contig on blastx step and
    doesn't move further. I could not make out the problem. Can you please help
    me out of this.

Thanks and regards

--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

_______________________________________________
maker-devel mailing list
maker-devel at box290.bluehost.com<mailto:maker-devel at box290.bluehost.com>
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

Barry Moore
Research Scientist
Dept. of Human Genetics
University of Utah
Salt Lake City, UT 84112
--------------------------------------------
(801) 585-3543







--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India

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From carsonhh at gmail.com  Fri Dec 21 10:25:13 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 21 Dec 2012 12:25:13 -0500
Subject: [maker-devel] AED eAED QI scores??
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BC2@mxb2.hg.genetics.utah.edu>
Message-ID: <CCFA01EA.172C9%carsonhh@gmail.com>

eAED is a little more than that.  It is still at a base pair level, but it
uses exon inference from mRNAseq and in addition has a protein evidence
overlap correction for each exon.  Sometimes the overlapping protein reading
frame doesn't perfectly match the entire model (exonerate for example can
shift the reading frames by 1 in the middle to get a better alignment and
BLAST can't).  This means that just because you have physical overlap it may
be meaningless overlap.  eAED corrects for this.  Also it can use inferred
evidence from mRNAseq.  For example if you have mRNAseq data that confirm
both ends of an exon around the splice site, but not the middle of the exon,
then there is probably enough correlated data for MAKER to confidently infer
the middle of the exon.  It then counts those base pairs as confirmed even
though they don't physically overlap.  This is common with mRNAseq data as
it can taper off in the middle of long exons or won't align correctly around
short exons.  In both cases the middle gets left out.  MAKER uses
information from the reading frame and the ab initio predictors to infer if
those regions.

Most of the time eAED and AED will be identical.  eAED can sometimes be
higher for certain mRNAseq alignments and lower for what are apparent
spurious protein alignments.

--Carson


From:  Daniel Ence <dence at genetics.utah.edu>
Date:  Friday, 21 December, 2012 12:08 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] AED eAED QI scores??

Hi Kapeel, the QI columns are explained in the first maker paper (Cantarel
and Yandell, Genome Research 2008).

>From pg. 189,
Table 2. Maker quality index summary

Length of the 5 UTR

Fraction of splice sites confirmed by an EST alignment

Fraction of exons that overlap an EST alignment

Fraction of exons that overlap EST or Protein alignments

Fraction of splice sites confirmed by a SNAP prediction

Fraction of exons that overlap a SNAP prediction

Number of exons in the mRNA

Length of the 3 UTR

Length of the protein sequence produced by the mRNA



eAED is the the AED edit distance at an exon level, not base pair level like
normal AED. 



Thanks,

Daniel 


Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

From: maker-devel-bounces at yandell-lab.org
[maker-devel-bounces at yandell-lab.org] on behalf of Kapeel Chougule
[kapeelc at gmail.com]
Sent: Thursday, December 20, 2012 4:00 PM
To: maker-devel at yandell-lab.org
Subject: [maker-devel] AED eAED QI scores??

Hello, 

I ran MAKER 2.27 using the option pred_stats=1 in the control file. In the
last column of the maker output gff file I have the following annotation
quality measures.

AED:0.41 eAED:0.41 QI:0|0.5|0.4|1|1|1|5|0|278

My understanding is that with AED score 0 your annotations are in prefect
agreement with the evidence data sets and with AED 1,vice versa.

 I would like to know what is the difference between AED against eAED score.
And how do I interpret the QI cloumn?

Thank you,

-- 

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719   
www.genome.arizona.edu <http://www.genome.arizona.edu>
_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From carsonhh at gmail.com  Fri Dec 21 10:31:32 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 21 Dec 2012 12:31:32 -0500
Subject: [maker-devel] query
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>
Message-ID: <CCFA05D3.172F3%carsonhh@gmail.com>

Also try and capture the entire STDERR to a file for the failure, and attach
it to the e-mail.  The failure indicates that augustus itself failed.
Normally augustus should have provided it's own error message before the
"ERROR: Augustus failed" message.  If not it means that augusuts is failing
to even initialize.  If you send the whole STDERR we can find command line
MAKER used to run augustus, and we can let you try and execute the exact
same command line directly in a terminal (outside of MAKER) to see what
augustus does.

Thanks,
Carson



From:  Daniel Ence <dence at genetics.utah.edu>
Date:  Friday, 21 December, 2012 12:23 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] query

Hi Indu, 

I'm going to echo Barry's request for more details about this problem too.
Does augustus fail on more than one contig or does it fail repeatedly on the
same contig? If its only contig, how big is that contig and is it possibly
all masked out by repeatmasker? If you exclude that one contig, do the rest
run successfully?  What are you using to mask the repeats in the genome?
Which augustus model are you using, and how did you choose that model?

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

From: indu khatri [indu2287 at gmail.com]
Sent: Thursday, December 20, 2012 12:41 PM
To: maker-devel at yandell-lab.org
Cc: Barry Moore; Daniel Ence
Subject: Fwd: [maker-devel] query


Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species I
chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore
<barry.moore at genetics.utah.edu> wrote:
> Hi Indu, 
> 
> The error output as Daniel suggested would be great and also a bit more detail
> on the problem.  Is it stalled on a long contig - how long?  How long has it
> been stalled for?  How many cpus are you running?  Are you running under MPI?
> How big is the protein evidence file?  If you're using the altest function for
> your ESTs then it's running tblastx which is up to 10X slower than blastn with
> regular ESTs, is it possible that you're stuck on tblastx?
> 
> Finally, it can help if you isolate the problem a bit.  Can you run
> successfully on any of your contigs by running single contigs in your fasta
> file?  If it's stalled on a large contig, iteratively cut it in half and see
> if the problem isolates to one part of the contig.
> 
> B
> 
> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
> 
>>  Hello Maker-devel
>>     Thanks for adding me to the list. I am new to this field. I have a query
>> regarding maker annotation.
>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>     annotate it using MAKER pipeline. I only have paired end WGS sequence
>> from
>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
>>     any transcriptome data. I am using ESTs of a closer species for
>> validation
>>     and similarly the protein sequences. I have started annotation but the
>>     problem is the pipeline gets stuck to the first contig on blastx step and
>>     doesn't move further. I could not make out the problem. Can you please
>> help
>>     me out of this.
>> 
>> Thanks and regards
>> 
>> -- 
>>  
>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6
>> a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
>> PhD Research Fellow,
>> C/o Dr. Srikrishna Subramanian
>> Institute of Microbial Technology,
>> Chandigarh-160036,
>> India
>> 
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
> 
> Barry Moore
> Research Scientist
> Dept. of Human Genetics
> University of Utah
> Salt Lake City, UT 84112
> --------------------------------------------
> (801) 585-3543
> 
> 
> 
> 



-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India

_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From carsonhh at gmail.com  Fri Dec 21 10:40:10 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 21 Dec 2012 12:40:10 -0500
Subject: [maker-devel] query
In-Reply-To: <CCFA0734.17301%carsonhh@gmail.com>
Message-ID: <CCFA0869.17306%carsonhh@gmail.com>

In addition my last e-mailed explanation of eAED, here is where you can get
an explanation of how MAKER uses and calculates AED -->
http://www.biomedcentral.com/1471-2105/12/491
The original AED concept was borrowed from here  -->
http://www.biomedcentral.com/1471-2105/10/67

Thanks,
Carson

From:  Carson Holt <carsonhh at gmail.com>
Date:  Friday, 21 December, 2012 12:31 PM
To:  Daniel Ence <dence at genetics.utah.edu>, "maker-devel at yandell-lab.org"
<maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] query

Also try and capture the entire STDERR to a file for the failure, and attach
it to the e-mail.  The failure indicates that augustus itself failed.
Normally augustus should have provided it's own error message before the
"ERROR: Augustus failed" message.  If not it means that augusuts is failing
to even initialize.  If you send the whole STDERR we can find command line
MAKER used to run augustus, and we can let you try and execute the exact
same command line directly in a terminal (outside of MAKER) to see what
augustus does.

Thanks,
Carson



From:  Daniel Ence <dence at genetics.utah.edu>
Date:  Friday, 21 December, 2012 12:23 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] query

Hi Indu, 

I'm going to echo Barry's request for more details about this problem too.
Does augustus fail on more than one contig or does it fail repeatedly on the
same contig? If its only contig, how big is that contig and is it possibly
all masked out by repeatmasker? If you exclude that one contig, do the rest
run successfully?  What are you using to mask the repeats in the genome?
Which augustus model are you using, and how did you choose that model?

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

From: indu khatri [indu2287 at gmail.com]
Sent: Thursday, December 20, 2012 12:41 PM
To: maker-devel at yandell-lab.org
Cc: Barry Moore; Daniel Ence
Subject: Fwd: [maker-devel] query


Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species I
chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore
<barry.moore at genetics.utah.edu> wrote:
> Hi Indu, 
> 
> The error output as Daniel suggested would be great and also a bit more detail
> on the problem.  Is it stalled on a long contig - how long?  How long has it
> been stalled for?  How many cpus are you running?  Are you running under MPI?
> How big is the protein evidence file?  If you're using the altest function for
> your ESTs then it's running tblastx which is up to 10X slower than blastn with
> regular ESTs, is it possible that you're stuck on tblastx?
> 
> Finally, it can help if you isolate the problem a bit.  Can you run
> successfully on any of your contigs by running single contigs in your fasta
> file?  If it's stalled on a large contig, iteratively cut it in half and see
> if the problem isolates to one part of the contig.
> 
> B
> 
> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
> 
>>  Hello Maker-devel
>>     Thanks for adding me to the list. I am new to this field. I have a query
>> regarding maker annotation.
>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>     annotate it using MAKER pipeline. I only have paired end WGS sequence
>> from
>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
>>     any transcriptome data. I am using ESTs of a closer species for
>> validation
>>     and similarly the protein sequences. I have started annotation but the
>>     problem is the pipeline gets stuck to the first contig on blastx step and
>>     doesn't move further. I could not make out the problem. Can you please
>> help
>>     me out of this.
>> 
>> Thanks and regards
>> 
>> -- 
>>  
>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6
>> a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
>> PhD Research Fellow,
>> C/o Dr. Srikrishna Subramanian
>> Institute of Microbial Technology,
>> Chandigarh-160036,
>> India
>> 
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
> 
> Barry Moore
> Research Scientist
> Dept. of Human Genetics
> University of Utah
> Salt Lake City, UT 84112
> --------------------------------------------
> (801) 585-3543
> 
> 
> 
> 



-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India

_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/m
aker-devel_yandell-lab.org


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From indu2287 at gmail.com  Fri Dec 21 10:58:31 2012
From: indu2287 at gmail.com (indu khatri)
Date: Fri, 21 Dec 2012 09:58:31 -0800
Subject: [maker-devel] query
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
	<15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>
	<CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>
	<CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>
	<F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>
Message-ID: <CAFCapZvXFg3TdU8uEd0szU9inLCrNjujH36tEm55DO=1rKR1mw@mail.gmail.com>

Hii Daniel

It was failing for 1 contig only. The contig length is approx 1.5 Mb.
Excluding that contig the run was successful. I am using RepeatMasker
libraries only for masking the sequences. I used Fusarium graminearum
species as Augustus model species.

I have one more query about Maker annotation results. Only augustus as gene
predictor can be a good predictor for annotations or I have to retrain it
using the previous results from first runs of MAKER in order to get
validated gene models.

Thanks.


On Fri, Dec 21, 2012 at 9:23 AM, Daniel Ence <dence at genetics.utah.edu>wrote:

>  Hi Indu,
>
>  I'm going to echo Barry's request for more details about this problem
> too. Does augustus fail on more than one contig or does it fail repeatedly
> on the same contig? If its only contig, how big is that contig and is it
> possibly all masked out by repeatmasker? If you exclude that one contig, do
> the rest run successfully?  What are you using to mask the repeats in the
> genome? Which augustus model are you using, and how did you choose that
> model?
>
>  Thanks,
> Daniel
>
>  Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
>
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
>   ------------------------------
> *From:* indu khatri [indu2287 at gmail.com]
> *Sent:* Thursday, December 20, 2012 12:41 PM
> *To:* maker-devel at yandell-lab.org
> *Cc:* Barry Moore; Daniel Ence
> *Subject:* Fwd: [maker-devel] query
>
>
> Thanks Daniel and Barry for your reply.
>
> I have sorted out that problem. It was due to very distant homolog species
> I chose for training.
>
> But, I am still getting some errors while running MAKER.
> ERROR: Augustus failed
> ERROR: Failed while preparing ab-inits
> ERROR: Chunk failed at level:4, tier_type:0
> FAILED CONTIG
>
> Can you please tell me what is the possible reason for this error?
>
> Thanks in advance.
>
>
>
> On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <
> barry.moore at genetics.utah.edu> wrote:
>
>> Hi Indu,
>>
>>  The error output as Daniel suggested would be great and also a bit more
>> detail on the problem.  Is it stalled on a long contig - how long?  How
>> long has it been stalled for?  How many cpus are you running?  Are you
>> running under MPI?  How big is the protein evidence file?  If you're using
>> the altest function for your ESTs then it's running tblastx which is up to
>> 10X slower than blastn with regular ESTs, is it possible that you're stuck
>> on tblastx?
>>
>>  Finally, it can help if you isolate the problem a bit.  Can you run
>> successfully on any of your contigs by running single contigs in your fasta
>> file?  If it's stalled on a large contig, iteratively cut it in half and
>> see if the problem isolates to one part of the contig.
>>
>>  B
>>
>>  On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
>>
>>     Hello Maker-devel
>>     Thanks for adding me to the list. I am new to this field. I have a
>> query regarding maker annotation.
>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>     annotate it using MAKER pipeline. I only have paired end WGS sequence
>> from
>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont
>> have
>>     any transcriptome data. I am using ESTs of a closer species for
>> validation
>>     and similarly the protein sequences. I have started annotation but the
>>     problem is the pipeline gets stuck to the first contig on blastx step
>> and
>>     doesn't move further. I could not make out the problem. Can you
>> please help
>>     me out of this.
>>
>>  Thanks and regards
>>
>>  --
>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
>> Khatri
>> PhD Research Fellow,
>> C/o Dr. Srikrishna Subramanian
>> Institute of Microbial Technology,
>> Chandigarh-160036,
>> India
>>
>>    _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>>
>>  Barry Moore
>> Research Scientist
>> Dept. of Human Genetics
>> University of Utah
>> Salt Lake City, UT 84112
>> --------------------------------------------
>> (801) 585-3543
>>
>>
>>
>>
>>
>
>
>  --
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
> Khatri
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
>
>
>
>
>  --
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
> Khatri
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>


-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India
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From dence at genetics.utah.edu  Fri Dec 21 12:07:40 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Fri, 21 Dec 2012 19:07:40 +0000
Subject: [maker-devel] query
In-Reply-To: <CAFCapZvXFg3TdU8uEd0szU9inLCrNjujH36tEm55DO=1rKR1mw@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
	<15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>
	<CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>
	<CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>
	<F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>,
	<CAFCapZvXFg3TdU8uEd0szU9inLCrNjujH36tEm55DO=1rKR1mw@mail.gmail.com>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49C08@mxb2.hg.genetics.utah.edu>

Hi Indu, Can you send the error output that Carson mentioned? Using a closely related augustus model for your organism can be a good approach, if that's the best you can do. Training augustus for your organism would be better, but you don't have to do it.

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: indu khatri [indu2287 at gmail.com]
Sent: Friday, December 21, 2012 10:58 AM
To: Daniel Ence
Cc: maker-devel at yandell-lab.org
Subject: Re: [maker-devel] query

Hii Daniel

It was failing for 1 contig only. The contig length is approx 1.5 Mb. Excluding that contig the run was successful. I am using RepeatMasker libraries only for masking the sequences. I used Fusarium graminearum species as Augustus model species.

I have one more query about Maker annotation results. Only augustus as gene predictor can be a good predictor for annotations or I have to retrain it using the previous results from first runs of MAKER in order to get validated gene models.

Thanks.


On Fri, Dec 21, 2012 at 9:23 AM, Daniel Ence <dence at genetics.utah.edu<mailto:dence at genetics.utah.edu>> wrote:
Hi Indu,

I'm going to echo Barry's request for more details about this problem too. Does augustus fail on more than one contig or does it fail repeatedly on the same contig? If its only contig, how big is that contig and is it possibly all masked out by repeatmasker? If you exclude that one contig, do the rest run successfully?  What are you using to mask the repeats in the genome? Which augustus model are you using, and how did you choose that model?

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah

15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: indu khatri [indu2287 at gmail.com<mailto:indu2287 at gmail.com>]
Sent: Thursday, December 20, 2012 12:41 PM
To: maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org>
Cc: Barry Moore; Daniel Ence
Subject: Fwd: [maker-devel] query


Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species I chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <barry.moore at genetics.utah.edu<mailto:barry.moore at genetics.utah.edu>> wrote:
Hi Indu,

The error output as Daniel suggested would be great and also a bit more detail on the problem.  Is it stalled on a long contig - how long?  How long has it been stalled for?  How many cpus are you running?  Are you running under MPI?  How big is the protein evidence file?  If you're using the altest function for your ESTs then it's running tblastx which is up to 10X slower than blastn with regular ESTs, is it possible that you're stuck on tblastx?

Finally, it can help if you isolate the problem a bit.  Can you run successfully on any of your contigs by running single contigs in your fasta file?  If it's stalled on a large contig, iteratively cut it in half and see if the problem isolates to one part of the contig.

B

On Dec 19, 2012, at 10:33 PM, indu khatri wrote:

 Hello Maker-devel
    Thanks for adding me to the list. I am new to this field. I have a query regarding maker annotation.
    I have assembled a fungal Genome with 1590 contigs and was trying to
    annotate it using MAKER pipeline. I only have paired end WGS sequence from
    Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
    any transcriptome data. I am using ESTs of a closer species for validation
    and similarly the protein sequences. I have started annotation but the
    problem is the pipeline gets stuck to the first contig on blastx step and
    doesn't move further. I could not make out the problem. Can you please help
    me out of this.

Thanks and regards

--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

_______________________________________________
maker-devel mailing list
maker-devel at box290.bluehost.com<mailto:maker-devel at box290.bluehost.com>
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

Barry Moore
Research Scientist
Dept. of Human Genetics
University of Utah
Salt Lake City, UT 84112
--------------------------------------------
(801) 585-3543







--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India


_______________________________________________
maker-devel mailing list
maker-devel at box290.bluehost.com<mailto:maker-devel at box290.bluehost.com>
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org




--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

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From carsonhh at gmail.com  Fri Dec 21 12:14:38 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 21 Dec 2012 14:14:38 -0500
Subject: [maker-devel] query
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49C08@mxb2.hg.genetics.utah.edu>
Message-ID: <CCFA1E38.17327%carsonhh@gmail.com>

Daniel is right. If it's another Fusarium species retraining probably isn't
necessary (distantly related fungi would probably need retraining though).
I'd recommend using GeneMark as well though.  It is very easy to train and
works well on Fungi species.  Could you include the version of Augustus you
are using and the sequence for the contig that fails when you send the
STDERR.

Thanks,
Carson


From:  Daniel Ence <dence at genetics.utah.edu>
Date:  Friday, 21 December, 2012 2:07 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] query

Hi Indu, Can you send the error output that Carson mentioned? Using a
closely related augustus model for your organism can be a good approach, if
that's the best you can do. Training augustus for your organism would be
better, but you don't have to do it.

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

From: indu khatri [indu2287 at gmail.com]
Sent: Friday, December 21, 2012 10:58 AM
To: Daniel Ence
Cc: maker-devel at yandell-lab.org
Subject: Re: [maker-devel] query

Hii Daniel 

It was failing for 1 contig only. The contig length is approx 1.5 Mb.
Excluding that contig the run was successful. I am using RepeatMasker
libraries only for masking the sequences. I used Fusarium graminearum
species as Augustus model species.

I have one more query about Maker annotation results. Only augustus as gene
predictor can be a good predictor for annotations or I have to retrain it
using the previous results from first runs of MAKER in order to get
validated gene models.

Thanks.


On Fri, Dec 21, 2012 at 9:23 AM, Daniel Ence <dence at genetics.utah.edu>
wrote:
> Hi Indu, 
> 
> I'm going to echo Barry's request for more details about this problem too.
> Does augustus fail on more than one contig or does it fail repeatedly on the
> same contig? If its only contig, how big is that contig and is it possibly all
> masked out by repeatmasker? If you exclude that one contig, do the rest run
> successfully?  What are you using to mask the repeats in the genome? Which
> augustus model are you using, and how did you choose that model?
> 
> Thanks,
> Daniel
> 
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> 
> From: indu khatri [indu2287 at gmail.com]
> Sent: Thursday, December 20, 2012 12:41 PM
> To: maker-devel at yandell-lab.org
> Cc: Barry Moore; Daniel Ence
> Subject: Fwd: [maker-devel] query
> 
> 
> Thanks Daniel and Barry for your reply.
> 
> I have sorted out that problem. It was due to very distant homolog species I
> chose for training.
> 
> But, I am still getting some errors while running MAKER.
> ERROR: Augustus failed
> ERROR: Failed while preparing ab-inits
> ERROR: Chunk failed at level:4, tier_type:0
> FAILED CONTIG
> 
> Can you please tell me what is the possible reason for this error?
> 
> Thanks in advance.
> 
> 
> 
> On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <barry.moore at genetics.utah.edu>
> wrote:
>> Hi Indu, 
>> 
>> The error output as Daniel suggested would be great and also a bit more
>> detail on the problem.  Is it stalled on a long contig - how long?  How long
>> has it been stalled for?  How many cpus are you running?  Are you running
>> under MPI?  How big is the protein evidence file?  If you're using the altest
>> function for your ESTs then it's running tblastx which is up to 10X slower
>> than blastn with regular ESTs, is it possible that you're stuck on tblastx?
>> 
>> Finally, it can help if you isolate the problem a bit.  Can you run
>> successfully on any of your contigs by running single contigs in your fasta
>> file?  If it's stalled on a large contig, iteratively cut it in half and see
>> if the problem isolates to one part of the contig.
>> 
>> B
>> 
>> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
>> 
>>>  Hello Maker-devel
>>>     Thanks for adding me to the list. I am new to this field. I have a query
>>> regarding maker annotation.
>>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>>     annotate it using MAKER pipeline. I only have paired end WGS sequence
>>> from
>>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
>>>     any transcriptome data. I am using ESTs of a closer species for
>>> validation
>>>     and similarly the protein sequences. I have started annotation but the
>>>     problem is the pipeline gets stuck to the first contig on blastx step
>>> and
>>>     doesn't move further. I could not make out the problem. Can you please
>>> help
>>>     me out of this.
>>> 
>>> Thanks and regards
>>> 
>>> -- 
>>>  
>>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e
>>> 6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
>>> PhD Research Fellow,
>>> C/o Dr. Srikrishna Subramanian
>>> Institute of Microbial Technology,
>>> Chandigarh-160036,
>>> India
>>> 
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> 
>> Barry Moore
>> Research Scientist
>> Dept. of Human Genetics
>> University of Utah
>> Salt Lake City, UT 84112
>> --------------------------------------------
>> (801) 585-3543
>> 
>> 
>> 
>> 
> 
> 
> 
> -- 
>  
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a
> &attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
> 
> 
> 
> 
> -- 
>  
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a
> &attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
> 
> 
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
> 



-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

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From indu2287 at gmail.com  Wed Dec 26 02:34:43 2012
From: indu2287 at gmail.com (indu khatri)
Date: Wed, 26 Dec 2012 15:04:43 +0530
Subject: [maker-devel] query
In-Reply-To: <CCFA1E38.17327%carsonhh@gmail.com>
References: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49C08@mxb2.hg.genetics.utah.edu>
	<CCFA1E38.17327%carsonhh@gmail.com>
Message-ID: <CAFCapZsuT4TaT1dDk3=C0QjtaJxK0-iBQ_HR-n2wDk6kAGiLFw@mail.gmail.com>

Thanks all.

The maker is now running properly. I don't know where the problem actually
was. I re install everything and now its working.

I'll let you know if there are any problems in future.

Thanks!


On Sat, Dec 22, 2012 at 12:44 AM, Carson Holt <carsonhh at gmail.com> wrote:

> Daniel is right. If it's another Fusarium species retraining probably
> isn't necessary (distantly related fungi would probably need retraining
> though).  I'd recommend using GeneMark as well though.  It is very easy to
> train and works well on Fungi species.  Could you include the version of
> Augustus you are using and the sequence for the contig that fails when you
> send the STDERR.
>
> Thanks,
> Carson
>
>
> From: Daniel Ence <dence at genetics.utah.edu>
> Date: Friday, 21 December, 2012 2:07 PM
> To: "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
> Subject: Re: [maker-devel] query
>
> Hi Indu, Can you send the error output that Carson mentioned? Using a
> closely related augustus model for your organism can be a good approach, if
> that's the best you can do. Training augustus for your organism would be
> better, but you don't have to do it.
>
> Thanks,
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ------------------------------
> *From:* indu khatri [indu2287 at gmail.com]
> *Sent:* Friday, December 21, 2012 10:58 AM
> *To:* Daniel Ence
> *Cc:* maker-devel at yandell-lab.org
> *Subject:* Re: [maker-devel] query
>
> Hii Daniel
>
> It was failing for 1 contig only. The contig length is approx 1.5 Mb.
> Excluding that contig the run was successful. I am using RepeatMasker
> libraries only for masking the sequences. I used Fusarium graminearum
> species as Augustus model species.
>
> I have one more query about Maker annotation results. Only augustus as
> gene predictor can be a good predictor for annotations or I have to retrain
> it using the previous results from first runs of MAKER in order to get
> validated gene models.
>
> Thanks.
>
>
> On Fri, Dec 21, 2012 at 9:23 AM, Daniel Ence <dence at genetics.utah.edu>wrote:
>
>> Hi Indu,
>>
>> I'm going to echo Barry's request for more details about this problem
>> too. Does augustus fail on more than one contig or does it fail repeatedly
>> on the same contig? If its only contig, how big is that contig and is it
>> possibly all masked out by repeatmasker? If you exclude that one contig, do
>> the rest run successfully?  What are you using to mask the repeats in the
>> genome? Which augustus model are you using, and how did you choose that
>> model?
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>>
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ------------------------------
>> *From:* indu khatri [indu2287 at gmail.com]
>> *Sent:* Thursday, December 20, 2012 12:41 PM
>> *To:* maker-devel at yandell-lab.org
>> *Cc:* Barry Moore; Daniel Ence
>> *Subject:* Fwd: [maker-devel] query
>>
>>
>> Thanks Daniel and Barry for your reply.
>>
>> I have sorted out that problem. It was due to very distant homolog
>> species I chose for training.
>>
>> But, I am still getting some errors while running MAKER.
>> ERROR: Augustus failed
>> ERROR: Failed while preparing ab-inits
>> ERROR: Chunk failed at level:4, tier_type:0
>> FAILED CONTIG
>>
>> Can you please tell me what is the possible reason for this error?
>>
>> Thanks in advance.
>>
>>
>>
>> On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <
>> barry.moore at genetics.utah.edu> wrote:
>>
>>> Hi Indu,
>>>
>>> The error output as Daniel suggested would be great and also a bit more
>>> detail on the problem.  Is it stalled on a long contig - how long?  How
>>> long has it been stalled for?  How many cpus are you running?  Are you
>>> running under MPI?  How big is the protein evidence file?  If you're using
>>> the altest function for your ESTs then it's running tblastx which is up to
>>> 10X slower than blastn with regular ESTs, is it possible that you're stuck
>>> on tblastx?
>>>
>>> Finally, it can help if you isolate the problem a bit.  Can you run
>>> successfully on any of your contigs by running single contigs in your fasta
>>> file?  If it's stalled on a large contig, iteratively cut it in half and
>>> see if the problem isolates to one part of the contig.
>>>
>>> B
>>>
>>> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
>>>
>>>  Hello Maker-devel
>>>     Thanks for adding me to the list. I am new to this field. I have a
>>> query regarding maker annotation.
>>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>>     annotate it using MAKER pipeline. I only have paired end WGS
>>> sequence from
>>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont
>>> have
>>>     any transcriptome data. I am using ESTs of a closer species for
>>> validation
>>>     and similarly the protein sequences. I have started annotation but
>>> the
>>>     problem is the pipeline gets stuck to the first contig on blastx
>>> step and
>>>     doesn't move further. I could not make out the problem. Can you
>>> please help
>>>     me out of this.
>>>
>>> Thanks and regards
>>>
>>> --
>>>
>>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
>>> Khatri
>>> PhD Research Fellow,
>>> C/o Dr. Srikrishna Subramanian
>>> Institute of Microbial Technology,
>>> Chandigarh-160036,
>>> India
>>>
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>>
>>>
>>> Barry Moore
>>> Research Scientist
>>> Dept. of Human Genetics
>>> University of Utah
>>> Salt Lake City, UT 84112
>>> --------------------------------------------
>>> (801) 585-3543
>>>
>>>
>>>
>>>
>>>
>>
>>
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>>
>
>
> _______________________________________________ maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>



-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>
Indu
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From kapeelc at gmail.com  Mon Dec  3 09:55:20 2012
From: kapeelc at gmail.com (Kapeel Chougule)
Date: Mon, 3 Dec 2012 09:55:20 -0700
Subject: [maker-devel] Maker error message
In-Reply-To: <CCDCDA68.16600%carsonhh@gmail.com>
References: <CA+DOtefhs9BMWn-S2LPv_MkUvikM446jvuxRqfqUax11hhNp3g@mail.gmail.com>
	<CCDCDA68.16600%carsonhh@gmail.com>
Message-ID: <CA+DOtefF6sYrMvnVuQO8P75E5ekfQ1uQaAkvhmuTZ43bBdan9g@mail.gmail.com>

Hi Carson,

The MAKER devel version worked like a charm on the failed chromosomes. But
the MAKER 2.2.6 ended up giving me the same ERROR when I re-run it.

Thank you,

Kapeel

On Thu, Nov 29, 2012 at 7:52 AM, Carson Holt <carsonhh at gmail.com> wrote:

> There should normally be more error message than that.  The module used to
> capture the error returns the string "Died" without an end line character
> when there is a problem capturing the STDERR of the failure (and I see that
> phrase here), so could you run this again and see if it produces a
> different message the second time.  Also I'm going to send you instructions
> on download the development version of MAKER in a separate message (off
> list).  It is easier for me to make changes and have you test them
> immediately that way.  Also there are already some bug fixes in the devel
> version so it's good to rule those out.
>
> Thanks,
> Carson
>
>
> From: Kapeel Chougule <kapeelc at gmail.com>
> Date: Wednesday, 28 November, 2012 3:15 PM
> To: "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
> Subject: Re: [maker-devel] Maker error message
>
> Attached is the maker_opts file. I am using my own customized repeat
> library and repeat_protein files. The length of the identifiers was
> shortened to < 50 characters as in my previous run it complained for
> identifiers having > 50 characters.
>
> Thank you,
>
> Kapeel
> On Wed, Nov 28, 2012 at 12:25 PM, Daniel Ence <dence at genetics.utah.edu>wrote:
>
>> Hi Kapeel,
>>
>> Please keep this discussion on the maker-devel group, so we can get
>> everyone's input to help resolve this issue with maker.
>>
>> Can you sen me the maker_opts file that you were using? The options that
>> might be relevant include the libraries you were giving repeatrunner and
>> repeatmasker.
>>
>> Thanks,
>> Daniel
>>
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: kapeelc at gmail.com [kapeelc at gmail.com]
>> Sent: Wednesday, November 28, 2012 11:39 AM
>> To: Daniel Ence
>> Subject: Re: Maker error message
>>
>> Hi Daniel,
>>
>> Here is the output around the error:
>>
>> j_size:94   current j:76
>>  j_size:94   current j:77
>>  j_size:94   current j:78
>>  j_size:94   current j:79
>>  j_size:94   current j:80
>>  j_size:94   current j:81
>>  j_size:94   current j:82
>>  j_size:94   current j:83
>>  j_size:94   current j:84
>>  j_size:94   current j:85
>>  j_size:94   current j:86
>>  j_size:94   current j:87
>>  j_size:94   current j:88
>>  j_size:94   current j:89
>>  j_size:94   current j:90
>>  j_size:94   current j:91
>>  j_size:94   current j:92
>>  j_size:94   current j:93
>> ...finished clustering.
>> re reading repeat masker report.
>>
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/Chr5.64.PReDa_121015_short%2Efasta.specific.out
>> re reading blast report.
>>
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/Chr5.64.TE_protein_db_121015_short_header%2Efasta.repeatrunner
>> deleted:1 hits
>> in cluster::shadow_cluster...
>> DiedERROR: Failed while processing all repeats
>> ERROR: Chunk failed at level:3, tier_type:1
>> FAILED CONTIG:Chr5
>>
>> ERROR: Chunk failed at level:2, tier_type:0
>> FAILED CONTIG:Chr5
>>
>>
>>
>>
>> --Next Contig--
>>
>> Processing run.log file...
>>
>> Maker is now finished!!!
>>
>>
>> For RepeatMasker I am using wublast as the search engine.
>>
>> The run log had this:
>>
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.62
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.62
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> DIED    RANK    0
>> DIED    COUNT   2
>>
>> Is there way to skip the the failed chunk and move forward??
>>
>> Thanks
>>
>> Kapeel
>>
>> <quote author='Daniel Ence'>
>> Hi Kapeel,
>>
>> I think we need some more information about the settings that you're
>> running
>> maker with. Can you give more of the output around the error? Also, since
>> maker is dying during the repeatmasking stage, can you tell us more about
>> the settings you have for RepeatMasker?
>>
>>
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________
>> From: maker-devel-bounces at yandell-lab.org
>> [maker-devel-bounces at yandell-lab.org] on behalf of Kapeel Chougule
>> [kapeelc at gmail.com]
>> Sent: Tuesday, November 27, 2012 6:23 PM
>> To: maker-devel at yandell-lab.org
>> Subject: [maker-devel] Maker error message
>>
>> Hi,
>>
>> I recently ran into this error for chr5. I am using maker 2.26 .
>>
>> DiedERROR: Failed while processing all repeats
>> ERROR: Chunk failed at level:3, tier_type:1
>> FAILED CONTIG:Chr5
>>
>> ERROR: Chunk failed at level:2, tier_type:0
>> FAILED CONTIG:Chr5
>>
>> Could someone help me understand this error and why its happening?
>>
>> Thanks,
>>
>> --
>>
>> Kapeel Chougule
>> Systems Programmer
>> Arizona Genomics Institute (AGI)
>> Thomas W. Keating Bioresearch Building
>> University of Arizona
>> 1657 E. Helen Street
>> Tucson, AZ 85719
>> www.genome.arizona.edu<http://www.genome.arizona.edu>
>>
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>> </quote>
>> Quoted from:
>>
>> http://gmod.827538.n3.nabble.com/Maker-error-message-tp4027051p4027052.html
>>
>
>
>
> --
> *
>
> Kapeel Chougule
> Systems Programmer
> Arizona Genomics Institute (AGI)
> Thomas W. Keating Bioresearch Building
> University of Arizona
> 1657 E. Helen Street
> Tucson, AZ 85719
> www.genome.arizona.edu
> *
> _______________________________________________ maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>



-- 
*

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719
www.genome.arizona.edu
*
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From carsonhh at gmail.com  Mon Dec  3 12:28:40 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Mon, 03 Dec 2012 14:28:40 -0500
Subject: [maker-devel] Maker error message
In-Reply-To: <CA+DOtefF6sYrMvnVuQO8P75E5ekfQ1uQaAkvhmuTZ43bBdan9g@mail.gmail.com>
Message-ID: <CCE26754.16702%carsonhh@gmail.com>

Good to know.  It must be covered by an existing bug fix.  I'm going to wrap
up the devel version as 2.27 in the next couple days and put it online.

Thanks,
Carson



From:  Kapeel Chougule <kapeelc at gmail.com>
Date:  Monday, 3 December, 2012 11:55 AM
To:  Carson Holt <carsonhh at gmail.com>
Cc:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] Maker error message

Hi Carson,

The MAKER devel version worked like a charm on the failed chromosomes. But
the MAKER 2.2.6 ended up giving me the same ERROR when I re-run it.

Thank you,

Kapeel

On Thu, Nov 29, 2012 at 7:52 AM, Carson Holt <carsonhh at gmail.com> wrote:
> There should normally be more error message than that.  The module used to
> capture the error returns the string "Died" without an end line character when
> there is a problem capturing the STDERR of the failure (and I see that phrase
> here), so could you run this again and see if it produces a different message
> the second time.  Also I'm going to send you instructions on download the
> development version of MAKER in a separate message (off list).  It is easier
> for me to make changes and have you test them immediately that way.  Also
> there are already some bug fixes in the devel version so it's good to rule
> those out.
> 
> Thanks,
> Carson
> 
> 
> From:  Kapeel Chougule <kapeelc at gmail.com>
> Date:  Wednesday, 28 November, 2012 3:15 PM
> To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
> Subject:  Re: [maker-devel] Maker error message
> 
> Attached is the maker_opts file. I am using my own customized repeat library
> and repeat_protein files. The length of the identifiers was shortened to < 50
> characters as in my previous run it complained for identifiers having > 50
> characters.  
> 
> Thank you,
> 
> Kapeel
> On Wed, Nov 28, 2012 at 12:25 PM, Daniel Ence <dence at genetics.utah.edu> wrote:
>> Hi Kapeel, 
>> 
>> Please keep this discussion on the maker-devel group, so we can get
>> everyone's input to help resolve this issue with maker.
>> 
>> Can you sen me the maker_opts file that you were using? The options that
>> might be relevant include the libraries you were giving repeatrunner and
>> repeatmasker.
>> 
>> Thanks,
>> Daniel 
>> 
>> 
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: kapeelc at gmail.com [kapeelc at gmail.com]
>> Sent: Wednesday, November 28, 2012 11:39 AM
>> To: Daniel Ence
>> Subject: Re: Maker error message
>> 
>> Hi Daniel,
>> 
>> Here is the output around the error:
>> 
>> j_size:94   current j:76
>>  j_size:94   current j:77
>>  j_size:94   current j:78
>>  j_size:94   current j:79
>>  j_size:94   current j:80
>>  j_size:94   current j:81
>>  j_size:94   current j:82
>>  j_size:94   current j:83
>>  j_size:94   current j:84
>>  j_size:94   current j:85
>>  j_size:94   current j:86
>>  j_size:94   current j:87
>>  j_size:94   current j:88
>>  j_size:94   current j:89
>>  j_size:94   current j:90
>>  j_size:94   current j:91
>>  j_size:94   current j:92
>>  j_size:94   current j:93
>> ...finished clustering.
>> re reading repeat masker report.
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/Chr5.64.PReDa_121015_short%2Efasta.specif
>> ic.out
>> re reading blast report.
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/Chr5.64.TE_protein_db_121015_short_header
>> %2Efasta.repeatrunner
>> deleted:1 hits
>> in cluster::shadow_cluster...
>> DiedERROR: Failed while processing all repeats
>> ERROR: Chunk failed at level:3, tier_type:1
>> FAILED CONTIG:Chr5
>> 
>> ERROR: Chunk failed at level:2, tier_type:0
>> FAILED CONTIG:Chr5
>> 
>> 
>> 
>> 
>> --Next Contig--
>> 
>> Processing run.log file...
>> 
>> Maker is now finished!!!
>> 
>> 
>> For RepeatMasker I am using wublast as the search engine.
>> 
>> The run log had this:
>> 
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.62
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.62
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> DIED    RANK    0
>> DIED    COUNT   2
>> 
>> Is there way to skip the the failed chunk and move forward??
>> 
>> Thanks
>> 
>> Kapeel
>> 
>> <quote author='Daniel Ence'>
>> Hi Kapeel,
>> 
>> I think we need some more information about the settings that you're running
>> maker with. Can you give more of the output around the error? Also, since
>> maker is dying during the repeatmasking stage, can you tell us more about
>> the settings you have for RepeatMasker?
>> 
>> 
>> 
>> Thanks,
>> Daniel
>> 
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________
>> From: maker-devel-bounces at yandell-lab.org
>> [maker-devel-bounces at yandell-lab.org] on behalf of Kapeel Chougule
>> [kapeelc at gmail.com]
>> Sent: Tuesday, November 27, 2012 6:23 PM
>> To: maker-devel at yandell-lab.org
>> Subject: [maker-devel] Maker error message
>> 
>> Hi,
>> 
>> I recently ran into this error for chr5. I am using maker 2.26 .
>> 
>> DiedERROR: Failed while processing all repeats
>> ERROR: Chunk failed at level:3, tier_type:1
>> FAILED CONTIG:Chr5
>> 
>> ERROR: Chunk failed at level:2, tier_type:0
>> FAILED CONTIG:Chr5
>> 
>> Could someone help me understand this error and why its happening?
>> 
>> Thanks,
>> 
>> --
>> 
>> Kapeel Chougule
>> Systems Programmer
>> Arizona Genomics Institute (AGI)
>> Thomas W. Keating Bioresearch Building
>> University of Arizona
>> 1657 E. Helen Street
>> Tucson, AZ 85719
>> www.genome.arizona.edu <http://www.genome.arizona.edu>
>> <http://www.genome.arizona.edu>
>> 
>> 
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> 
>> </quote>
>> Quoted from:
>> http://gmod.827538.n3.nabble.com/Maker-error-message-tp4027051p4027052.html
> 
> 
> 
> -- 
> 
> Kapeel Chougule
> Systems Programmer
> Arizona Genomics Institute (AGI)
> Thomas W. Keating Bioresearch Building
> University of Arizona
> 1657 E. Helen Street
> Tucson, AZ 85719 
> www.genome.arizona.edu <http://www.genome.arizona.edu>
> 
> _______________________________________________ maker-devel mailing list
> maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/mak
> er-devel_yandell-lab.org



-- 

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719   
www.genome.arizona.edu <http://www.genome.arizona.edu>



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From parulk at caltech.edu  Tue Dec  4 17:27:18 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Tue, 4 Dec 2012 16:27:18 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCDD765C.16680%carsonhh@gmail.com>
References: <CCDD765C.16680%carsonhh@gmail.com>
Message-ID: <4049.131.215.15.234.1354667238.squirrel@webmail.caltech.edu>

Dear Carson,

Thanks once again, we have limited experimental data with very short ESTs.
CEGMA is useful for us to gauge our gene-model.
On a different note to re-annotate genome(post evidence based
prediction(used as training dataset)and abinitio gene-prediction). Here
are the control parameters I am using with AED score set to 0.5, however I
get predictions that includes the ones with AED score of 1.00 in resulting
gff3 file. Though I do see the number of genes reduced to 1/3 of initial
gff3 file.

#-----Genome (Required for De-Novo Annotation)
genome=Scaffold1.fa #genome sequence file in fasta format
organism_type=eukaryotic #eukaryotic or prokaryotic. Default is eukaryotic

#-----Re-annotation Using MAKER Derived GFF3
genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 = no
protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 = no

#-----MAKER Behavior Options
AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by 0
and 1)

Thanks and regards,
Parul Kudtarkar

> Wow 330,000 is a lot. a large portion of genes are likely to be partial at
> best.  You should seriously consider using mRNAseq to capture those by
> using maker's est_gff option to pass in results from cufflinks or trinity.
>  Also I wouldn't even try to annotate contigs less than 10kb in size, just
> have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>
> Thanks,
> Carson
>
>
>
>
> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>
>>Thanks for the guidance Carson, total contig size is 330,611 with N50 of
>>39.17kb. I agree we have short ESTs. So this is the possible reason when
>>filtering based on AED score 0.75 there are no gene models predicted
>>despite the model_gff file has few genes with scores less than 0.75?
>>
>>Thanks and regards,
>>Parul Kudtarkar
>>
>>> There are certain characteristics that are apparent in this contig.
>>First
>>> it seems to be repeat rich with a very low gene density.  You also have
>>very short ESTs, and because of the lengths you are probably getting
>>many
>>> of them to align spuriously which produces very short gene models that
>>are
>>> more than likely false positives or at the very least just a piece of a
>>gene.  I would turn off est2genome as a predictor for this reason unless
>>you can get longer EST assemblies (i.e. From mRNAseq).    Your protein
>>alignments also seem to be few and far between.  You probably need to
>>add
>>> more proteins from a couple of related species, and you might consider
>>using protein2genome rather than est2genome as a predictor if you are
>>still working to generate a training set. Also est2genome produced
>>models
>>> almost always have an AED score near 0 so mixing est2genome with the
>>AED_threshold with such limited protein support does create an
>>artificial
>>> bias to get back very short and incomplete models.
>>>
>>> How many contigs do you have in total and what is the N50 value for the
>>assembly? If you have a large number of very short contigs, you will get
>>very inflated gene counts because you get genes split across contigs and
>>many contigs tend t be subtle rearrangements of other contigs just
>>assembled in a slightly different way (so you can get bits and pieces of
>>the same genes just rearranged).  This scenario is another confounding
>>factor if using the est2genome predictor with short ESTs.  I would
>>recommend running CEGMA to get an estimate for the genome completeness
>>as
>>> well as get an estimate of fragmentation as one of the statistics
>>produced
>>> is a percent of genes that are found complete (end to end) vs those
>>> that
>>are partial.  CEGMA identifies house keeping genes that tend to be
>>shorter
>>> and less intron rich than other genes in the genome, so if CEGMA gives
>>> a
>>high partial percentage and a low complete percentage, then this pattern
>>can be expected to be even more exaggerated for other genes in the
>>genome.
>>>
>>> If your genome is highly fragmented or proteins do not align well then
>>there are other strategies.  For example, some vertebrate genomes end up
>>having extremely fragmented assemblies (on the order of 100,000
>>contigs),
>>> and if they are distantly related to other annotated species few
>>proteins
>>> may align to the contigs because the introns in the alignments tend to
>>be
>>> so long and exons so short that it pushes down the significance scores
>>too
>>> much.  In those cases heavy mRNAseq seems to be the best if not only
>>> way
>>to get enough evidence to stitch gene models together.
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>
>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>
>>>>Dear Carson and Daniel,
>>>>Thanks. I ran sample file for filtering genes based on AED score. The
>>input gff3 file was provided to option model_pred(see attached file
>>Scaffold1.gff), the cutoff AED score was set to 0.75. There are at least
>>>> 5
>>>>genes with AED score less than 0.75. However there were no genes
>>>> predicted
>>>>in the output file(see attached file Scaffold1_out). I have also
>>attached
>>>>the maker_opts.ctl. Could you please advice on this.
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>> Use the AED_threshold option in the maker_opts.ctl file if you just
>>>>>want
>>>>> to restrict final gene models to close matches directly within maker.
>>>>>On
>>>>> the other hand, if you are trying to build a dataset for training
>>>>> gene
>>predictors, use the maker2zff script for generating a filtered dataset
>>>>>for
>>>>> SNAP training.  There are a number of filters available. Just call
>>>>> the
>>script once without parameters to see the options.
>>>>> Thanks,
>>>>> Carson
>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>Hi Parul,
>>>>>>I think the way you described (with the maker_opts.ctl file) is how
>>you
>>>>>>want to proceed. You still need to give the genome too.
>>>>>>Daniel
>>>>>>Daniel Ence
>>>>>>Graduate Student
>>>>>>Eccles Institute of Human Genetics
>>>>>>University of Utah
>>>>>>15 North 2030 East, Room 2100
>>>>>>Salt Lake City, UT 84112-5330
>>>>>>________________________________________
>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
>>[parulk at caltech.edu]
>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>To: Parul Kudtarkar
>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>Also, are there any other parameters that are required when filtering
>>based on AED score?
>>>>>>> Hello Carson,
>>>>>>> Just to confirm, Is there a script that would filter gene models at
>>specific AED score.
>>>>>>> Alternatively if I were to do this within maker with regards to
>>>>>>>parameters
>>>>>>> in maker_opts.ctl file I would have to provide my predicted genes
>>>>>>>gff3
>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and 1 is
>>worst
>>>>>>>> as
>>>>>>>> it is a distance metric.  You can use the AED_threshold parameter
>>to
>>>>>>>> require better matching to the evidence by setting it closer to 0.
>>>>>>>>You
>>>>>>>> can
>>>>>>>> also try to increase protein homology evidence as some of your
>>calls
>>>>>>>>may
>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>> --Carson
>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>>Dear Maker community,
>>>>>>>>>For gene-prediction I get training data-set from evidence based
>>prediction, I use this data-set to train SNAP as well as Augustus
>>predictions, followed by boot-strapping. I would typically expect
>>20-30K
>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>> indicating
>>>>>>>>> too
>>>>>>>>>many false positives. Is there a way to further refine these
>>predication/script to retain predictions with AED score 1 and if
>>yes
>>>>>>>>>how
>>>>>>>>>to go about this?
>>>>>>>>>Thanks and regards,
>>>>>>>>>Parul Kudtarkar
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>>>_______________________________________________
>>>>>>>>>maker-devel mailing list
>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>>>>>>>>>.o
>>rg
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>>>_______________________________________________
>>>>>>maker-devel mailing list
>>>>>>maker-devel at box290.bluehost.com
>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.or
>>>>>>g
>>_______________________________________________
>>>>>>maker-devel mailing list
>>>>>>maker-devel at box290.bluehost.com
>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.or
>>>>>>g
>>>>> _______________________________________________
>>>>> maker-devel mailing list
>>>>> maker-devel at box290.bluehost.com
>>>>>
>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>>
>>>
>>>
>>
>>
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org
>>
>>
>>
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From parulk at caltech.edu  Tue Dec  4 17:39:51 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Tue, 4 Dec 2012 16:39:51 -0800 (PST)
Subject: [maker-devel] Maker Behavior Options
Message-ID: <4249.131.215.15.234.1354667991.squirrel@webmail.caltech.edu>

Hello,

I would presume min_contig=1 here is equal to contig size of 1KB?
min_contig=1

Thanks and regards,
Parul Kudtarkar

--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From dence at genetics.utah.edu  Wed Dec  5 08:39:36 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Wed, 5 Dec 2012 15:39:36 +0000
Subject: [maker-devel] Maker Behavior Options
In-Reply-To: <4249.131.215.15.234.1354667991.squirrel@webmail.caltech.edu>
References: <4249.131.215.15.234.1354667991.squirrel@webmail.caltech.edu>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB589F@mxb2.hg.genetics.utah.edu>

Hi Parul, 

The "1" there actually means 1 bp. The default setting in maker is to allow contigs of any length. 


Thanks
Daniel 

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________________
From: maker-devel-bounces at yandell-lab.org [maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar [parulk at caltech.edu]
Sent: Tuesday, December 04, 2012 5:39 PM
To: maker-devel at yandell-lab.org
Subject: [maker-devel] Maker Behavior Options

Hello,

I would presume min_contig=1 here is equal to contig size of 1KB?
min_contig=1

Thanks and regards,
Parul Kudtarkar

--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org


_______________________________________________
maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org



From carsonhh at gmail.com  Wed Dec  5 08:44:52 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Wed, 05 Dec 2012 10:44:52 -0500
Subject: [maker-devel] AED score
In-Reply-To: <4049.131.215.15.234.1354667238.squirrel@webmail.caltech.edu>
Message-ID: <CCE4D52D.169DA%carsonhh@gmail.com>

You should always get all predictions, but should only get models
(match/match_part) with AED scores less than 0.5.  You should never get
models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
keep_preds set.

Do you have keeps_preds set or gene models with AED values above your
threshold (not match/match_part features)?  If the first one is the case,
just set it to 0.  If the second one in the case, could you send me
example GFF3?

Thanks,
Carson



On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Carson,
>
>Thanks once again, we have limited experimental data with very short ESTs.
>CEGMA is useful for us to gauge our gene-model.
>On a different note to re-annotate genome(post evidence based
>prediction(used as training dataset)and abinitio gene-prediction). Here
>are the control parameters I am using with AED score set to 0.5, however I
>get predictions that includes the ones with AED score of 1.00 in resulting
>gff3 file. Though I do see the number of genes reduced to 1/3 of initial
>gff3 file.
>
>#-----Genome (Required for De-Novo Annotation)
>genome=Scaffold1.fa #genome sequence file in fasta format
>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is eukaryotic
>
>#-----Re-annotation Using MAKER Derived GFF3
>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
>est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 = no
>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
>other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 = no
>
>#-----MAKER Behavior Options
>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by 0
>and 1)
>
>Thanks and regards,
>Parul Kudtarkar
>
>> Wow 330,000 is a lot. a large portion of genes are likely to be partial
>>at
>> best.  You should seriously consider using mRNAseq to capture those by
>> using maker's est_gff option to pass in results from cufflinks or
>>trinity.
>>  Also I wouldn't even try to annotate contigs less than 10kb in size,
>>just
>> have maker skip them by setting the min_contig filter in the
>> maker_opts.ctl file.
>>
>> Thanks,
>> Carson
>>
>>
>>
>>
>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>
>>>Thanks for the guidance Carson, total contig size is 330,611 with N50 of
>>>39.17kb. I agree we have short ESTs. So this is the possible reason when
>>>filtering based on AED score 0.75 there are no gene models predicted
>>>despite the model_gff file has few genes with scores less than 0.75?
>>>
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>
>>>> There are certain characteristics that are apparent in this contig.
>>>First
>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>have
>>>very short ESTs, and because of the lengths you are probably getting
>>>many
>>>> of them to align spuriously which produces very short gene models that
>>>are
>>>> more than likely false positives or at the very least just a piece of
>>>>a
>>>gene.  I would turn off est2genome as a predictor for this reason unless
>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your protein
>>>alignments also seem to be few and far between.  You probably need to
>>>add
>>>> more proteins from a couple of related species, and you might consider
>>>using protein2genome rather than est2genome as a predictor if you are
>>>still working to generate a training set. Also est2genome produced
>>>models
>>>> almost always have an AED score near 0 so mixing est2genome with the
>>>AED_threshold with such limited protein support does create an
>>>artificial
>>>> bias to get back very short and incomplete models.
>>>>
>>>> How many contigs do you have in total and what is the N50 value for
>>>>the
>>>assembly? If you have a large number of very short contigs, you will get
>>>very inflated gene counts because you get genes split across contigs and
>>>many contigs tend t be subtle rearrangements of other contigs just
>>>assembled in a slightly different way (so you can get bits and pieces of
>>>the same genes just rearranged).  This scenario is another confounding
>>>factor if using the est2genome predictor with short ESTs.  I would
>>>recommend running CEGMA to get an estimate for the genome completeness
>>>as
>>>> well as get an estimate of fragmentation as one of the statistics
>>>produced
>>>> is a percent of genes that are found complete (end to end) vs those
>>>> that
>>>are partial.  CEGMA identifies house keeping genes that tend to be
>>>shorter
>>>> and less intron rich than other genes in the genome, so if CEGMA gives
>>>> a
>>>high partial percentage and a low complete percentage, then this pattern
>>>can be expected to be even more exaggerated for other genes in the
>>>genome.
>>>>
>>>> If your genome is highly fragmented or proteins do not align well then
>>>there are other strategies.  For example, some vertebrate genomes end up
>>>having extremely fragmented assemblies (on the order of 100,000
>>>contigs),
>>>> and if they are distantly related to other annotated species few
>>>proteins
>>>> may align to the contigs because the introns in the alignments tend to
>>>be
>>>> so long and exons so short that it pushes down the significance scores
>>>too
>>>> much.  In those cases heavy mRNAseq seems to be the best if not only
>>>> way
>>>to get enough evidence to stitch gene models together.
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>
>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>
>>>>>Dear Carson and Daniel,
>>>>>Thanks. I ran sample file for filtering genes based on AED score. The
>>>input gff3 file was provided to option model_pred(see attached file
>>>Scaffold1.gff), the cutoff AED score was set to 0.75. There are at least
>>>>> 5
>>>>>genes with AED score less than 0.75. However there were no genes
>>>>> predicted
>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>attached
>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you just
>>>>>>want
>>>>>> to restrict final gene models to close matches directly within
>>>>>>maker.
>>>>>>On
>>>>>> the other hand, if you are trying to build a dataset for training
>>>>>> gene
>>>predictors, use the maker2zff script for generating a filtered dataset
>>>>>>for
>>>>>> SNAP training.  There are a number of filters available. Just call
>>>>>> the
>>>script once without parameters to see the options.
>>>>>> Thanks,
>>>>>> Carson
>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>>Hi Parul,
>>>>>>>I think the way you described (with the maker_opts.ctl file) is how
>>>you
>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>Daniel
>>>>>>>Daniel Ence
>>>>>>>Graduate Student
>>>>>>>Eccles Institute of Human Genetics
>>>>>>>University of Utah
>>>>>>>15 North 2030 East, Room 2100
>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>________________________________________
>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
>>>[parulk at caltech.edu]
>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>To: Parul Kudtarkar
>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>Also, are there any other parameters that are required when
>>>>>>>filtering
>>>based on AED score?
>>>>>>>> Hello Carson,
>>>>>>>> Just to confirm, Is there a script that would filter gene models
>>>>>>>>at
>>>specific AED score.
>>>>>>>> Alternatively if I were to do this within maker with regards to
>>>>>>>>parameters
>>>>>>>> in maker_opts.ctl file I would have to provide my predicted genes
>>>>>>>>gff3
>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and 1 is
>>>worst
>>>>>>>>> as
>>>>>>>>> it is a distance metric.  You can use the AED_threshold parameter
>>>to
>>>>>>>>> require better matching to the evidence by setting it closer to
>>>>>>>>>0.
>>>>>>>>>You
>>>>>>>>> can
>>>>>>>>> also try to increase protein homology evidence as some of your
>>>calls
>>>>>>>>>may
>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>> --Carson
>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>wrote:
>>>>>>>>>>Dear Maker community,
>>>>>>>>>>For gene-prediction I get training data-set from evidence based
>>>prediction, I use this data-set to train SNAP as well as Augustus
>>>predictions, followed by boot-strapping. I would typically expect
>>>20-30K
>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>> indicating
>>>>>>>>>> too
>>>>>>>>>>many false positives. Is there a way to further refine these
>>>predication/script to retain predictions with AED score 1 and if
>>>yes
>>>>>>>>>>how
>>>>>>>>>>to go about this?
>>>>>>>>>>Thanks and regards,
>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>--
>>>>>>>>>>Scientific Programmer
>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>Beckman Institute,
>>>>>>>>>>California Institute of Technology
>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>ab
>>>>>>>>>>.o
>>>rg
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>>>_______________________________________________
>>>>>>>maker-devel mailing list
>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.
>>>>>>>or
>>>>>>>g
>>>_______________________________________________
>>>>>>>maker-devel mailing list
>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.
>>>>>>>or
>>>>>>>g
>>>>>> _______________________________________________
>>>>>> maker-devel mailing list
>>>>>> maker-devel at box290.bluehost.com
>>>>>>
>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.o
>>>>>>rg
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>>
>>>>
>>>>
>>>
>>>
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>>>
>>>
>>>
>>>
>>
>>
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>





From parulk at caltech.edu  Wed Dec  5 13:04:35 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Wed, 5 Dec 2012 12:04:35 -0800 (PST)
Subject: [maker-devel] Maker Behavior Options
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB589F@mxb2.hg.genetics.utah.edu>
References: <4249.131.215.15.234.1354667991.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB589F@mxb2.hg.genetics.utah.edu>
Message-ID: <1863.131.215.15.234.1354737875.squirrel@webmail.caltech.edu>

Dear Daniel,

Thanks for a quick response.

Thanks and regards,
Parul Kudtarkar

> Hi Parul,
>
> The "1" there actually means 1 bp. The default setting in maker is to
> allow contigs of any length.
>
>
> Thanks
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: maker-devel-bounces at yandell-lab.org
> [maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
> [parulk at caltech.edu]
> Sent: Tuesday, December 04, 2012 5:39 PM
> To: maker-devel at yandell-lab.org
> Subject: [maker-devel] Maker Behavior Options
>
> Hello,
>
> I would presume min_contig=1 here is equal to contig size of 1KB?
> min_contig=1
>
> Thanks and regards,
> Parul Kudtarkar
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From carsonhh at gmail.com  Wed Dec  5 13:31:26 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Wed, 05 Dec 2012 15:31:26 -0500
Subject: [maker-devel] AED score
In-Reply-To: <1853.131.215.15.234.1354737826.squirrel@webmail.caltech.edu>
Message-ID: <CCE516E9.16A20%carsonhh@gmail.com>

Your output has no genes.  They've all been filtered out.  The gene
predictions are left for reference purposes, but there are no gene models
in the file.  You need to look at the type columns in the GFF3 file -->
match/match_part features are evidence and reference data but not models.
All models will have types gene/mRNA/exon/CDS.  For example if you just
want gene models in your file you can use the gff3_merge script with the
-g option, and it will only print out the gene models.

I think you may be misinterpreting what is happening at different steps,
as well as how to read the result files.  Could you give me a detailed
explanation of what you expect to get back together with your control
files and I can walk you through the configuration, and indicate what to
expect.  Also what was the report like from CEGMA. Could you include the
report file that shows how complete your genome is and how fragmented it
is?  

Thanks,
Carson



On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Carson,
>
>Thanks for a quick response. keep_preds is set to 0
>Though for previous step(ab-intio gene predictions keep_preds was set to
>1, see Scaffold1_input.gff). I have also attached the output file
>Scaffold1_out.gff.
>Please advice.
>
>Thanks and regards,
>Parul Kudtarkar
>
>> You should always get all predictions, but should only get models
>> (match/match_part) with AED scores less than 0.5.  You should never get
>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>> keep_preds set.
>>
>> Do you have keeps_preds set or gene models with AED values above your
>> threshold (not match/match_part features)?  If the first one is the
>>case,
>> just set it to 0.  If the second one in the case, could you send me
>> example GFF3?
>>
>> Thanks,
>> Carson
>>
>>
>>
>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>
>>>Dear Carson,
>>>
>>>Thanks once again, we have limited experimental data with very short
>>> ESTs.
>>>CEGMA is useful for us to gauge our gene-model.
>>>On a different note to re-annotate genome(post evidence based
>>>prediction(used as training dataset)and abinitio gene-prediction). Here
>>>are the control parameters I am using with AED score set to 0.5, however
>>> I
>>>get predictions that includes the ones with AED score of 1.00 in
>>> resulting
>>>gff3 file. Though I do see the number of genes reduced to 1/3 of initial
>>>gff3 file.
>>>
>>>#-----Genome (Required for De-Novo Annotation)
>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>> eukaryotic
>>>
>>>#-----Re-annotation Using MAKER Derived GFF3
>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
>>>est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
>>>no
>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
>>>other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 = no
>>>
>>>#-----MAKER Behavior Options
>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by 0
>>>and 1)
>>>
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>
>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>partial
>>>>at
>>>> best.  You should seriously consider using mRNAseq to capture those by
>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>trinity.
>>>>  Also I wouldn't even try to annotate contigs less than 10kb in size,
>>>>just
>>>> have maker skip them by setting the min_contig filter in the
>>>> maker_opts.ctl file.
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>
>>>>
>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>
>>>>>Thanks for the guidance Carson, total contig size is 330,611 with N50
>>>>> of
>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>> when
>>>>>filtering based on AED score 0.75 there are no gene models predicted
>>>>>despite the model_gff file has few genes with scores less than 0.75?
>>>>>
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>
>>>>>> There are certain characteristics that are apparent in this contig.
>>>>>First
>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>have
>>>>>very short ESTs, and because of the lengths you are probably getting
>>>>>many
>>>>>> of them to align spuriously which produces very short gene models
>>>>>> that
>>>>>are
>>>>>> more than likely false positives or at the very least just a piece
>>>>>>of
>>>>>>a
>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>> unless
>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your protein
>>>>>alignments also seem to be few and far between.  You probably need to
>>>>>add
>>>>>> more proteins from a couple of related species, and you might
>>>>>> consider
>>>>>using protein2genome rather than est2genome as a predictor if you are
>>>>>still working to generate a training set. Also est2genome produced
>>>>>models
>>>>>> almost always have an AED score near 0 so mixing est2genome with the
>>>>>AED_threshold with such limited protein support does create an
>>>>>artificial
>>>>>> bias to get back very short and incomplete models.
>>>>>>
>>>>>> How many contigs do you have in total and what is the N50 value for
>>>>>>the
>>>>>assembly? If you have a large number of very short contigs, you will
>>>>> get
>>>>>very inflated gene counts because you get genes split across contigs
>>>>> and
>>>>>many contigs tend t be subtle rearrangements of other contigs just
>>>>>assembled in a slightly different way (so you can get bits and pieces
>>>>> of
>>>>>the same genes just rearranged).  This scenario is another confounding
>>>>>factor if using the est2genome predictor with short ESTs.  I would
>>>>>recommend running CEGMA to get an estimate for the genome completeness
>>>>>as
>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>produced
>>>>>> is a percent of genes that are found complete (end to end) vs those
>>>>>> that
>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
>>>>>shorter
>>>>>> and less intron rich than other genes in the genome, so if CEGMA
>>>>>> gives
>>>>>> a
>>>>>high partial percentage and a low complete percentage, then this
>>>>> pattern
>>>>>can be expected to be even more exaggerated for other genes in the
>>>>>genome.
>>>>>>
>>>>>> If your genome is highly fragmented or proteins do not align well
>>>>>> then
>>>>>there are other strategies.  For example, some vertebrate genomes end
>>>>> up
>>>>>having extremely fragmented assemblies (on the order of 100,000
>>>>>contigs),
>>>>>> and if they are distantly related to other annotated species few
>>>>>proteins
>>>>>> may align to the contigs because the introns in the alignments tend
>>>>>> to
>>>>>be
>>>>>> so long and exons so short that it pushes down the significance
>>>>>> scores
>>>>>too
>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not only
>>>>>> way
>>>>>to get enough evidence to stitch gene models together.
>>>>>>
>>>>>> Thanks,
>>>>>> Carson
>>>>>>
>>>>>>
>>>>>>
>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>
>>>>>>>Dear Carson and Daniel,
>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
>>>>>>>The
>>>>>input gff3 file was provided to option model_pred(see attached file
>>>>>Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>> least
>>>>>>> 5
>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>> predicted
>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>attached
>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>Thanks and regards,
>>>>>>>Parul Kudtarkar
>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>just
>>>>>>>>want
>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>maker.
>>>>>>>>On
>>>>>>>> the other hand, if you are trying to build a dataset for training
>>>>>>>> gene
>>>>>predictors, use the maker2zff script for generating a filtered dataset
>>>>>>>>for
>>>>>>>> SNAP training.  There are a number of filters available. Just call
>>>>>>>> the
>>>>>script once without parameters to see the options.
>>>>>>>> Thanks,
>>>>>>>> Carson
>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>wrote:
>>>>>>>>>Hi Parul,
>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
>>>>>>>>>how
>>>>>you
>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>Daniel
>>>>>>>>>Daniel Ence
>>>>>>>>>Graduate Student
>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>University of Utah
>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>________________________________________
>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
>>>>>[parulk at caltech.edu]
>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>Also, are there any other parameters that are required when
>>>>>>>>>filtering
>>>>>based on AED score?
>>>>>>>>>> Hello Carson,
>>>>>>>>>> Just to confirm, Is there a script that would filter gene models
>>>>>>>>>>at
>>>>>specific AED score.
>>>>>>>>>> Alternatively if I were to do this within maker with regards to
>>>>>>>>>>parameters
>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>genes
>>>>>>>>>>gff3
>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and 1
>>>>>>>>>>> is
>>>>>worst
>>>>>>>>>>> as
>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
>>>>>>>>>>> parameter
>>>>>to
>>>>>>>>>>> require better matching to the evidence by setting it closer to
>>>>>>>>>>>0.
>>>>>>>>>>>You
>>>>>>>>>>> can
>>>>>>>>>>> also try to increase protein homology evidence as some of your
>>>>>calls
>>>>>>>>>>>may
>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>> --Carson
>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>wrote:
>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>For gene-prediction I get training data-set from evidence based
>>>>>prediction, I use this data-set to train SNAP as well as Augustus
>>>>>predictions, followed by boot-strapping. I would typically expect
>>>>>20-30K
>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>> indicating
>>>>>>>>>>>> too
>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>predication/script to retain predictions with AED score 1 and if
>>>>>yes
>>>>>>>>>>>>how
>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>--
>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-l
>>>>>>>>>>>>ab
>>>>>>>>>>>>.o
>>>>>rg
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>>>_______________________________________________
>>>>>>>>>maker-devel mailing list
>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>>>>>>>>>b.
>>>>>>>>>or
>>>>>>>>>g
>>>>>_______________________________________________
>>>>>>>>>maker-devel mailing list
>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>>>>>>>>>b.
>>>>>>>>>or
>>>>>>>>>g
>>>>>>>> _______________________________________________
>>>>>>>> maker-devel mailing list
>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>
>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>>>>>>>>.o
>>>>>>>>rg
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>>>
>>
>>
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org





From parulk at caltech.edu  Wed Dec  5 13:03:46 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Wed, 5 Dec 2012 12:03:46 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCE4D52D.169DA%carsonhh@gmail.com>
References: <CCE4D52D.169DA%carsonhh@gmail.com>
Message-ID: <1853.131.215.15.234.1354737826.squirrel@webmail.caltech.edu>

Dear Carson,

Thanks for a quick response. keep_preds is set to 0
Though for previous step(ab-intio gene predictions keep_preds was set to
1, see Scaffold1_input.gff). I have also attached the output file
Scaffold1_out.gff.
Please advice.

Thanks and regards,
Parul Kudtarkar

> You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>
> Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the case,
> just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>
> Thanks,
> Carson
>
>
>
> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>
>>Dear Carson,
>>
>>Thanks once again, we have limited experimental data with very short
>> ESTs.
>>CEGMA is useful for us to gauge our gene-model.
>>On a different note to re-annotate genome(post evidence based
>>prediction(used as training dataset)and abinitio gene-prediction). Here
>>are the control parameters I am using with AED score set to 0.5, however
>> I
>>get predictions that includes the ones with AED score of 1.00 in
>> resulting
>>gff3 file. Though I do see the number of genes reduced to 1/3 of initial
>>gff3 file.
>>
>>#-----Genome (Required for De-Novo Annotation)
>>genome=Scaffold1.fa #genome sequence file in fasta format
>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>> eukaryotic
>>
>>#-----Re-annotation Using MAKER Derived GFF3
>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
>>est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 = no
>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
>>other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 = no
>>
>>#-----MAKER Behavior Options
>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by 0
>>and 1)
>>
>>Thanks and regards,
>>Parul Kudtarkar
>>
>>> Wow 330,000 is a lot. a large portion of genes are likely to be partial
>>>at
>>> best.  You should seriously consider using mRNAseq to capture those by
>>> using maker's est_gff option to pass in results from cufflinks or
>>>trinity.
>>>  Also I wouldn't even try to annotate contigs less than 10kb in size,
>>>just
>>> have maker skip them by setting the min_contig filter in the
>>> maker_opts.ctl file.
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>
>>>
>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>
>>>>Thanks for the guidance Carson, total contig size is 330,611 with N50
>>>> of
>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>> when
>>>>filtering based on AED score 0.75 there are no gene models predicted
>>>>despite the model_gff file has few genes with scores less than 0.75?
>>>>
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>
>>>>> There are certain characteristics that are apparent in this contig.
>>>>First
>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>have
>>>>very short ESTs, and because of the lengths you are probably getting
>>>>many
>>>>> of them to align spuriously which produces very short gene models
>>>>> that
>>>>are
>>>>> more than likely false positives or at the very least just a piece of
>>>>>a
>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>> unless
>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your protein
>>>>alignments also seem to be few and far between.  You probably need to
>>>>add
>>>>> more proteins from a couple of related species, and you might
>>>>> consider
>>>>using protein2genome rather than est2genome as a predictor if you are
>>>>still working to generate a training set. Also est2genome produced
>>>>models
>>>>> almost always have an AED score near 0 so mixing est2genome with the
>>>>AED_threshold with such limited protein support does create an
>>>>artificial
>>>>> bias to get back very short and incomplete models.
>>>>>
>>>>> How many contigs do you have in total and what is the N50 value for
>>>>>the
>>>>assembly? If you have a large number of very short contigs, you will
>>>> get
>>>>very inflated gene counts because you get genes split across contigs
>>>> and
>>>>many contigs tend t be subtle rearrangements of other contigs just
>>>>assembled in a slightly different way (so you can get bits and pieces
>>>> of
>>>>the same genes just rearranged).  This scenario is another confounding
>>>>factor if using the est2genome predictor with short ESTs.  I would
>>>>recommend running CEGMA to get an estimate for the genome completeness
>>>>as
>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>produced
>>>>> is a percent of genes that are found complete (end to end) vs those
>>>>> that
>>>>are partial.  CEGMA identifies house keeping genes that tend to be
>>>>shorter
>>>>> and less intron rich than other genes in the genome, so if CEGMA
>>>>> gives
>>>>> a
>>>>high partial percentage and a low complete percentage, then this
>>>> pattern
>>>>can be expected to be even more exaggerated for other genes in the
>>>>genome.
>>>>>
>>>>> If your genome is highly fragmented or proteins do not align well
>>>>> then
>>>>there are other strategies.  For example, some vertebrate genomes end
>>>> up
>>>>having extremely fragmented assemblies (on the order of 100,000
>>>>contigs),
>>>>> and if they are distantly related to other annotated species few
>>>>proteins
>>>>> may align to the contigs because the introns in the alignments tend
>>>>> to
>>>>be
>>>>> so long and exons so short that it pushes down the significance
>>>>> scores
>>>>too
>>>>> much.  In those cases heavy mRNAseq seems to be the best if not only
>>>>> way
>>>>to get enough evidence to stitch gene models together.
>>>>>
>>>>> Thanks,
>>>>> Carson
>>>>>
>>>>>
>>>>>
>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>
>>>>>>Dear Carson and Daniel,
>>>>>>Thanks. I ran sample file for filtering genes based on AED score. The
>>>>input gff3 file was provided to option model_pred(see attached file
>>>>Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>> least
>>>>>> 5
>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>> predicted
>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>attached
>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>Thanks and regards,
>>>>>>Parul Kudtarkar
>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you just
>>>>>>>want
>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>maker.
>>>>>>>On
>>>>>>> the other hand, if you are trying to build a dataset for training
>>>>>>> gene
>>>>predictors, use the maker2zff script for generating a filtered dataset
>>>>>>>for
>>>>>>> SNAP training.  There are a number of filters available. Just call
>>>>>>> the
>>>>script once without parameters to see the options.
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>>>Hi Parul,
>>>>>>>>I think the way you described (with the maker_opts.ctl file) is how
>>>>you
>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>Daniel
>>>>>>>>Daniel Ence
>>>>>>>>Graduate Student
>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>University of Utah
>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>________________________________________
>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
>>>>[parulk at caltech.edu]
>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>To: Parul Kudtarkar
>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>Also, are there any other parameters that are required when
>>>>>>>>filtering
>>>>based on AED score?
>>>>>>>>> Hello Carson,
>>>>>>>>> Just to confirm, Is there a script that would filter gene models
>>>>>>>>>at
>>>>specific AED score.
>>>>>>>>> Alternatively if I were to do this within maker with regards to
>>>>>>>>>parameters
>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted genes
>>>>>>>>>gff3
>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and 1
>>>>>>>>>> is
>>>>worst
>>>>>>>>>> as
>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
>>>>>>>>>> parameter
>>>>to
>>>>>>>>>> require better matching to the evidence by setting it closer to
>>>>>>>>>>0.
>>>>>>>>>>You
>>>>>>>>>> can
>>>>>>>>>> also try to increase protein homology evidence as some of your
>>>>calls
>>>>>>>>>>may
>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>> --Carson
>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>wrote:
>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>For gene-prediction I get training data-set from evidence based
>>>>prediction, I use this data-set to train SNAP as well as Augustus
>>>>predictions, followed by boot-strapping. I would typically expect
>>>>20-30K
>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>> indicating
>>>>>>>>>>> too
>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>predication/script to retain predictions with AED score 1 and if
>>>>yes
>>>>>>>>>>>how
>>>>>>>>>>>to go about this?
>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>--
>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>>ab
>>>>>>>>>>>.o
>>>>rg
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>>--
>>>>>>>>Scientific Programmer
>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>Beckman Institute,
>>>>>>>>California Institute of Technology
>>>>>>>>http://www.spbase.org
>>>>>>>>_______________________________________________
>>>>>>>>maker-devel mailing list
>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.
>>>>>>>>or
>>>>>>>>g
>>>>_______________________________________________
>>>>>>>>maker-devel mailing list
>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.
>>>>>>>>or
>>>>>>>>g
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>
>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.o
>>>>>>>rg
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>>
>>
>>
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org
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From dence at genetics.utah.edu  Thu Dec  6 12:17:57 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Thu, 6 Dec 2012 19:17:57 +0000
Subject: [maker-devel] AED score
In-Reply-To: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
References: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>

Hi Parul, 

In step one, if protein2genome isn't turned on, then the protein alignments wont be used to generate gene models. Carson said before to use protein2genome to generate gene models for your trainings set, but you should know that those data aren't being used right now. 

In step 2, you can include the est and protein evidence that you used in step one, and the ab-initio predictors will takes those data as hints to guide their predictions. Also, are you reannotating human here? I'm just wondering why the snap file is called Pult, but the augustus species model is human. Also, I think you should include the same masking files from step 1, otherwise the ab-initio predictors will be predicting on the unmasked sequence which will give you many spurious predictions. 

In step 3, I'm not certain what you mean by boot-strapping. The control file you sent for step 3 will just pass-through all of the data from before. 

In step 4, I think what you'll get is pretty close to what you already had in step 3. The gene models from step 3 are already based on the est and protein data from step 1, so without giving any different evidence or ab-initio predictors, I think that you will just get the same gene models that you got from step 3. Those gene models are what you should be using to train snap. Also, is this the same genome as in the other steps? The genome file here is called genome.linear.fa, but before it was called genome.fa.

Step 5. So maker uses both evidence and ab-initio predictions to create models. If you don't give any evidence (EST or protein) maker will not annotate any gene models. You have also changed the augustus species model in this step, but I don't know what you've gained by going from one species to another. You should be training augustus with the gene models and then creating a new species model in augustus. As I understand it, the filter only operates on gene models, not ab-initio predictions or alignments, so it probably isn't doing anything the way you have it set. 

Step 6. I think step 5 and 6 should be combined. I don't know what you mean by boot-strapping here too. 

Hopefully that clears up some of the confusion with how maker works. Carson will probably have a lot of suggestions too. 

Thanks,
Daniel 

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________________
From: Parul Kudtarkar [parulk at caltech.edu]
Sent: Thursday, December 06, 2012 10:08 AM
To: carsonhh at gmail.com
Cc: Daniel Ence; maker-devel at yandell-lab.org
Subject: Re: [maker-devel] AED score

Hi Carson,

Once again thanks for a quick response. We expect to get 25,000 to 30,000
genes.
Here are the step
Step1. EST and proteins are used to predict gene-models. the resulting
file is used as training data-set for SNAP in step2. est2genome is turned
ON
Step2. Augustus and SNAP is used to predict genes.
Step3. The results are re-annoated(boot-strap)
Step4. EST and proteins are used to predict gene-models. The gff file from
step3. is used as model_gff. The resulting file is used as training
data-set for SNAP in step2
Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
contig_size to 10kb

Thanks and regards,
Parul Kudtarkar

I have attached the configuration file for each step.
> Your output has no genes.  They've all been filtered out.  The gene
predictions are left for reference purposes, but there are no gene models
> in the file.  You need to look at the type columns in the GFF3 file -->
match/match_part features are evidence and reference data but not
models.
> All models will have types gene/mRNA/exon/CDS.  For example if you just
want gene models in your file you can use the gff3_merge script with the
-g option, and it will only print out the gene models.
> I think you may be misinterpreting what is happening at different steps,
as well as how to read the result files.  Could you give me a detailed
explanation of what you expect to get back together with your control
files and I can walk you through the configuration, and indicate what to
expect.  Also what was the report like from CEGMA. Could you include the
report file that shows how complete your genome is and how fragmented it
is?
> Thanks,
> Carson
> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>Dear Carson,
>>Thanks for a quick response. keep_preds is set to 0
>>Though for previous step(ab-intio gene predictions keep_preds was set to
1, see Scaffold1_input.gff). I have also attached the output file
Scaffold1_out.gff.
>>Please advice.
>>Thanks and regards,
>>Parul Kudtarkar
>>> You should always get all predictions, but should only get models
(match/match_part) with AED scores less than 0.5.  You should never get
>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
keep_preds set.
>>> Do you have keeps_preds set or gene models with AED values above your
threshold (not match/match_part features)?  If the first one is the
>>>case,
>>> just set it to 0.  If the second one in the case, could you send me
example GFF3?
>>> Thanks,
>>> Carson
>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>Dear Carson,
>>>>Thanks once again, we have limited experimental data with very short
>>>> ESTs.
>>>>CEGMA is useful for us to gauge our gene-model.
>>>>On a different note to re-annotate genome(post evidence based
>>>>prediction(used as training dataset)and abinitio gene-prediction).
Here
>>>>are the control parameters I am using with AED score set to 0.5,
>>>> however
>>>> I
>>>>get predictions that includes the ones with AED score of 1.00 in
>>>> resulting
>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>> initial
>>>>gff3 file.
>>>>#-----Genome (Required for De-Novo Annotation)
>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>> eukaryotic
>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
no
>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>> no
>>>>#-----MAKER Behavior Options
>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
0
>>>>and 1)
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>partial
>>>>>at
>>>>> best.  You should seriously consider using mRNAseq to capture those
by
>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>trinity.
>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
size,
>>>>>just
>>>>> have maker skip them by setting the min_contig filter in the
maker_opts.ctl file.
>>>>> Thanks,
>>>>> Carson
>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
N50
>>>>>> of
>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>> when
>>>>>>filtering based on AED score 0.75 there are no gene models predicted
despite the model_gff file has few genes with scores less than 0.75?
Thanks and regards,
>>>>>>Parul Kudtarkar
>>>>>>> There are certain characteristics that are apparent in this
contig.
>>>>>>First
>>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>>have
>>>>>>very short ESTs, and because of the lengths you are probably getting
many
>>>>>>> of them to align spuriously which produces very short gene models
that
>>>>>>are
>>>>>>> more than likely false positives or at the very least just a piece
>>>>>>>of
>>>>>>>a
>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>> unless
>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>> protein
>>>>>>alignments also seem to be few and far between.  You probably need
to
>>>>>>add
>>>>>>> more proteins from a couple of related species, and you might
consider
>>>>>>using protein2genome rather than est2genome as a predictor if you
are
>>>>>>still working to generate a training set. Also est2genome produced
models
>>>>>>> almost always have an AED score near 0 so mixing est2genome with
the
>>>>>>AED_threshold with such limited protein support does create an
artificial
>>>>>>> bias to get back very short and incomplete models.
>>>>>>> How many contigs do you have in total and what is the N50 value
for
>>>>>>>the
>>>>>>assembly? If you have a large number of very short contigs, you will
>>>>>> get
>>>>>>very inflated gene counts because you get genes split across contigs
>>>>>> and
>>>>>>many contigs tend t be subtle rearrangements of other contigs just
assembled in a slightly different way (so you can get bits and
pieces
>>>>>> of
>>>>>>the same genes just rearranged).  This scenario is another
>>>>>> confounding
>>>>>>factor if using the est2genome predictor with short ESTs.  I would
recommend running CEGMA to get an estimate for the genome
>>>>>> completeness
>>>>>>as
>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>produced
>>>>>>> is a percent of genes that are found complete (end to end) vs
those
>>>>>>> that
>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
shorter
>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
gives
>>>>>>> a
>>>>>>high partial percentage and a low complete percentage, then this
>>>>>> pattern
>>>>>>can be expected to be even more exaggerated for other genes in the
genome.
>>>>>>> If your genome is highly fragmented or proteins do not align well
then
>>>>>>there are other strategies.  For example, some vertebrate genomes
end
>>>>>> up
>>>>>>having extremely fragmented assemblies (on the order of 100,000
contigs),
>>>>>>> and if they are distantly related to other annotated species few
>>>>>>proteins
>>>>>>> may align to the contigs because the introns in the alignments
tend
>>>>>>> to
>>>>>>be
>>>>>>> so long and exons so short that it pushes down the significance
scores
>>>>>>too
>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
only
>>>>>>> way
>>>>>>to get enough evidence to stitch gene models together.
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>Dear Carson and Daniel,
>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
The
>>>>>>input gff3 file was provided to option model_pred(see attached file
Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>> least
>>>>>>>> 5
>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>> predicted
>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>attached
>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>Thanks and regards,
>>>>>>>>Parul Kudtarkar
>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>just
>>>>>>>>>want
>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>maker.
>>>>>>>>>On
>>>>>>>>> the other hand, if you are trying to build a dataset for
training
>>>>>>>>> gene
>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>> dataset
>>>>>>>>>for
>>>>>>>>> SNAP training.  There are a number of filters available. Just
call
>>>>>>>>> the
>>>>>>script once without parameters to see the options.
>>>>>>>>> Thanks,
>>>>>>>>> Carson
>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>wrote:
>>>>>>>>>>Hi Parul,
>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
how
>>>>>>you
>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>Daniel
>>>>>>>>>>Daniel Ence
>>>>>>>>>>Graduate Student
>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>University of Utah
>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>________________________________________
>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>> Kudtarkar
>>>>>>[parulk at caltech.edu]
>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>Also, are there any other parameters that are required when
filtering
>>>>>>based on AED score?
>>>>>>>>>>> Hello Carson,
>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
models
>>>>>>>>>>>at
>>>>>>specific AED score.
>>>>>>>>>>> Alternatively if I were to do this within maker with regards
to
>>>>>>>>>>>parameters
>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>genes
>>>>>>>>>>>gff3
>>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>>Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
1
>>>>>>>>>>>> is
>>>>>>worst
>>>>>>>>>>>> as
>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
parameter
>>>>>>to
>>>>>>>>>>>> require better matching to the evidence by setting it closer
to
>>>>>>>>>>>>0.
>>>>>>>>>>>>You
>>>>>>>>>>>> can
>>>>>>>>>>>> also try to increase protein homology evidence as some of
your
>>>>>>calls
>>>>>>>>>>>>may
>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>> --Carson
>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>> based
>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
predictions, followed by boot-strapping. I would typically expect
20-30K
>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>> indicating
>>>>>>>>>>>>> too
>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>predication/script to retain predictions with AED score 1 and if yes
>>>>>>>>>>>>>how
>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>--
>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
-l
>>>>>>>>>>>>>ab
>>>>>>>>>>>>>.o
>>>>>>rg
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>--
>>>>>>>>>>Scientific Programmer
>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>Beckman Institute,
>>>>>>>>>>California Institute of Technology
>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
b.
>>>>>>>>>>or
>>>>>>>>>>g
>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
b.
>>>>>>>>>>or
>>>>>>>>>>g
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
.o
>>>>>>>>>rg
>>>>>>>>--
>>>>>>>>Scientific Programmer
>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>Beckman Institute,
>>>>>>>>California Institute of Technology
>>>>>>>>http://www.spbase.org
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org

--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org





From parulk at caltech.edu  Thu Dec  6 13:28:18 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Thu, 6 Dec 2012 12:28:18 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>
References: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>
Message-ID: <2337.131.215.15.234.1354825698.squirrel@webmail.caltech.edu>

Dear Daniel,

Thanks for clearing doubts. For augustus I am using the closest
species(lamprey) to species we are annotating. For SNAP the training
set(hmm file) is generated using predictions made from evidence based
gene-predictions(sorry the file name was mis-leading). I think STEP 3-6
are not required(more or less repetitive without further improving
genemodel). Post Step 1(generating training data for SNAP using evidence
based prediction) and Step2(ab-initio gene-prediction using SNAP and
augustus) do you have recommendations for further improving the gene
model?

Thanks and regards,
Parul Kudtarkar

> Hi Parul,
>
> In step one, if protein2genome isn't turned on, then the protein
> alignments wont be used to generate gene models. Carson said before to use
> protein2genome to generate gene models for your trainings set, but you
> should know that those data aren't being used right now.
>
> In step 2, you can include the est and protein evidence that you used in
> step one, and the ab-initio predictors will takes those data as hints to
> guide their predictions. Also, are you reannotating human here? I'm just
> wondering why the snap file is called Pult, but the augustus species model
> is human. Also, I think you should include the same masking files from
> step 1, otherwise the ab-initio predictors will be predicting on the
> unmasked sequence which will give you many spurious predictions.
>
> In step 3, I'm not certain what you mean by boot-strapping. The control
> file you sent for step 3 will just pass-through all of the data from
> before.
>
> In step 4, I think what you'll get is pretty close to what you already had
> in step 3. The gene models from step 3 are already based on the est and
> protein data from step 1, so without giving any different evidence or
> ab-initio predictors, I think that you will just get the same gene models
> that you got from step 3. Those gene models are what you should be using
> to train snap. Also, is this the same genome as in the other steps? The
> genome file here is called genome.linear.fa, but before it was called
> genome.fa.
>
> Step 5. So maker uses both evidence and ab-initio predictions to create
> models. If you don't give any evidence (EST or protein) maker will not
> annotate any gene models. You have also changed the augustus species model
> in this step, but I don't know what you've gained by going from one
> species to another. You should be training augustus with the gene models
> and then creating a new species model in augustus. As I understand it, the
> filter only operates on gene models, not ab-initio predictions or
> alignments, so it probably isn't doing anything the way you have it set.
>
> Step 6. I think step 5 and 6 should be combined. I don't know what you
> mean by boot-strapping here too.
>
> Hopefully that clears up some of the confusion with how maker works.
> Carson will probably have a lot of suggestions too.
>
> Thanks,
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 10:08 AM
> To: carsonhh at gmail.com
> Cc: Daniel Ence; maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
>
> Hi Carson,
>
> Once again thanks for a quick response. We expect to get 25,000 to 30,000
> genes.
> Here are the step
> Step1. EST and proteins are used to predict gene-models. the resulting
> file is used as training data-set for SNAP in step2. est2genome is turned
> ON
> Step2. Augustus and SNAP is used to predict genes.
> Step3. The results are re-annoated(boot-strap)
> Step4. EST and proteins are used to predict gene-models. The gff file from
> step3. is used as model_gff. The resulting file is used as training
> data-set for SNAP in step2
> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
> contig_size to 10kb
>
> Thanks and regards,
> Parul Kudtarkar
>
> I have attached the configuration file for each step.
>> Your output has no genes.  They've all been filtered out.  The gene
> predictions are left for reference purposes, but there are no gene models
>> in the file.  You need to look at the type columns in the GFF3 file -->
> match/match_part features are evidence and reference data but not
> models.
>> All models will have types gene/mRNA/exon/CDS.  For example if you just
> want gene models in your file you can use the gff3_merge script with the
> -g option, and it will only print out the gene models.
>> I think you may be misinterpreting what is happening at different steps,
> as well as how to read the result files.  Could you give me a detailed
> explanation of what you expect to get back together with your control
> files and I can walk you through the configuration, and indicate what to
> expect.  Also what was the report like from CEGMA. Could you include the
> report file that shows how complete your genome is and how fragmented it
> is?
>> Thanks,
>> Carson
>> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>Dear Carson,
>>>Thanks for a quick response. keep_preds is set to 0
>>>Though for previous step(ab-intio gene predictions keep_preds was set to
> 1, see Scaffold1_input.gff). I have also attached the output file
> Scaffold1_out.gff.
>>>Please advice.
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>> You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
>>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>>>> Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the
>>>>case,
>>>> just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>>>> Thanks,
>>>> Carson
>>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>Dear Carson,
>>>>>Thanks once again, we have limited experimental data with very short
>>>>> ESTs.
>>>>>CEGMA is useful for us to gauge our gene-model.
>>>>>On a different note to re-annotate genome(post evidence based
>>>>>prediction(used as training dataset)and abinitio gene-prediction).
> Here
>>>>>are the control parameters I am using with AED score set to 0.5,
>>>>> however
>>>>> I
>>>>>get predictions that includes the ones with AED score of 1.00 in
>>>>> resulting
>>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>> initial
>>>>>gff3 file.
>>>>>#-----Genome (Required for De-Novo Annotation)
>>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>> eukaryotic
>>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
> no
>>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>> no
>>>>>#-----MAKER Behavior Options
>>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
> 0
>>>>>and 1)
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>partial
>>>>>>at
>>>>>> best.  You should seriously consider using mRNAseq to capture those
> by
>>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>>trinity.
>>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
> size,
>>>>>>just
>>>>>> have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>>>>>> Thanks,
>>>>>> Carson
>>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
> N50
>>>>>>> of
>>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>> when
>>>>>>>filtering based on AED score 0.75 there are no gene models predicted
> despite the model_gff file has few genes with scores less than 0.75?
> Thanks and regards,
>>>>>>>Parul Kudtarkar
>>>>>>>> There are certain characteristics that are apparent in this
> contig.
>>>>>>>First
>>>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>>>have
>>>>>>>very short ESTs, and because of the lengths you are probably getting
> many
>>>>>>>> of them to align spuriously which produces very short gene models
> that
>>>>>>>are
>>>>>>>> more than likely false positives or at the very least just a piece
>>>>>>>>of
>>>>>>>>a
>>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>>> unless
>>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>> protein
>>>>>>>alignments also seem to be few and far between.  You probably need
> to
>>>>>>>add
>>>>>>>> more proteins from a couple of related species, and you might
> consider
>>>>>>>using protein2genome rather than est2genome as a predictor if you
> are
>>>>>>>still working to generate a training set. Also est2genome produced
> models
>>>>>>>> almost always have an AED score near 0 so mixing est2genome with
> the
>>>>>>>AED_threshold with such limited protein support does create an
> artificial
>>>>>>>> bias to get back very short and incomplete models.
>>>>>>>> How many contigs do you have in total and what is the N50 value
> for
>>>>>>>>the
>>>>>>>assembly? If you have a large number of very short contigs, you will
>>>>>>> get
>>>>>>>very inflated gene counts because you get genes split across contigs
>>>>>>> and
>>>>>>>many contigs tend t be subtle rearrangements of other contigs just
> assembled in a slightly different way (so you can get bits and
> pieces
>>>>>>> of
>>>>>>>the same genes just rearranged).  This scenario is another
>>>>>>> confounding
>>>>>>>factor if using the est2genome predictor with short ESTs.  I would
> recommend running CEGMA to get an estimate for the genome
>>>>>>> completeness
>>>>>>>as
>>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>>produced
>>>>>>>> is a percent of genes that are found complete (end to end) vs
> those
>>>>>>>> that
>>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
> shorter
>>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
> gives
>>>>>>>> a
>>>>>>>high partial percentage and a low complete percentage, then this
>>>>>>> pattern
>>>>>>>can be expected to be even more exaggerated for other genes in the
> genome.
>>>>>>>> If your genome is highly fragmented or proteins do not align well
> then
>>>>>>>there are other strategies.  For example, some vertebrate genomes
> end
>>>>>>> up
>>>>>>>having extremely fragmented assemblies (on the order of 100,000
> contigs),
>>>>>>>> and if they are distantly related to other annotated species few
>>>>>>>proteins
>>>>>>>> may align to the contigs because the introns in the alignments
> tend
>>>>>>>> to
>>>>>>>be
>>>>>>>> so long and exons so short that it pushes down the significance
> scores
>>>>>>>too
>>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
> only
>>>>>>>> way
>>>>>>>to get enough evidence to stitch gene models together.
>>>>>>>> Thanks,
>>>>>>>> Carson
>>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>>Dear Carson and Daniel,
>>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
> The
>>>>>>>input gff3 file was provided to option model_pred(see attached file
> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>> least
>>>>>>>>> 5
>>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>>> predicted
>>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>>attached
>>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>Thanks and regards,
>>>>>>>>>Parul Kudtarkar
>>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>just
>>>>>>>>>>want
>>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>>maker.
>>>>>>>>>>On
>>>>>>>>>> the other hand, if you are trying to build a dataset for
> training
>>>>>>>>>> gene
>>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>>> dataset
>>>>>>>>>>for
>>>>>>>>>> SNAP training.  There are a number of filters available. Just
> call
>>>>>>>>>> the
>>>>>>>script once without parameters to see the options.
>>>>>>>>>> Thanks,
>>>>>>>>>> Carson
>>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>wrote:
>>>>>>>>>>>Hi Parul,
>>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
> how
>>>>>>>you
>>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>>Daniel
>>>>>>>>>>>Daniel Ence
>>>>>>>>>>>Graduate Student
>>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>>University of Utah
>>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>>________________________________________
>>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>> Kudtarkar
>>>>>>>[parulk at caltech.edu]
>>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>>Also, are there any other parameters that are required when
> filtering
>>>>>>>based on AED score?
>>>>>>>>>>>> Hello Carson,
>>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
> models
>>>>>>>>>>>>at
>>>>>>>specific AED score.
>>>>>>>>>>>> Alternatively if I were to do this within maker with regards
> to
>>>>>>>>>>>>parameters
>>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>genes
>>>>>>>>>>>>gff3
>>>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
> 1
>>>>>>>>>>>>> is
>>>>>>>worst
>>>>>>>>>>>>> as
>>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
> parameter
>>>>>>>to
>>>>>>>>>>>>> require better matching to the evidence by setting it closer
> to
>>>>>>>>>>>>>0.
>>>>>>>>>>>>>You
>>>>>>>>>>>>> can
>>>>>>>>>>>>> also try to increase protein homology evidence as some of
> your
>>>>>>>calls
>>>>>>>>>>>>>may
>>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>>> --Carson
>>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>> based
>>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
> predictions, followed by boot-strapping. I would typically expect
> 20-30K
>>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>> indicating
>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>>predication/script to retain predictions with AED score 1 and if yes
>>>>>>>>>>>>>>how
>>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>>--
>>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
> -l
>>>>>>>>>>>>>>ab
>>>>>>>>>>>>>>.o
>>>>>>>rg
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>--
>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>>>>>>or
>>>>>>>>>>>g
>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>>>>>>or
>>>>>>>>>>>g
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
> .o
>>>>>>>>>>rg
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From dence at genetics.utah.edu  Thu Dec  6 14:35:04 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Thu, 6 Dec 2012 21:35:04 +0000
Subject: [maker-devel] AED score
In-Reply-To: <2337.131.215.15.234.1354825698.squirrel@webmail.caltech.edu>
References: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>,
	<2337.131.215.15.234.1354825698.squirrel@webmail.caltech.edu>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB59B1@mxb2.hg.genetics.utah.edu>

Hi Parul, 
I dont' really have many suggestions for improving the gene models after the annotation is done. Annotation is very dependent on the data you have at hand (the assembly, ESTs and proteins). One thing you could do to get more annotations is to run something like iprscan on the ab-initio predictions that didn't overlap any evidence and look for predictions that contain a pfam domain. Then you can send those predictions back through maker and promote them to gene model status. 

Do you have the CEGMA results that Carson asked about? That really will tell you what kind of annotation results you can expect. If the assembly doesn't have an N50 greater than the expected median gene size, then you can't expect very good results from automated annotation. 

Thanks,
Daniel 

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________________
From: Parul Kudtarkar [parulk at caltech.edu]
Sent: Thursday, December 06, 2012 1:28 PM
To: Daniel Ence
Cc: maker-devel at yandell-lab.org
Subject: Re: [maker-devel] AED score

Dear Daniel,

Thanks for clearing doubts. For augustus I am using the closest
species(lamprey) to species we are annotating. For SNAP the training
set(hmm file) is generated using predictions made from evidence based
gene-predictions(sorry the file name was mis-leading). I think STEP 3-6
are not required(more or less repetitive without further improving
genemodel). Post Step 1(generating training data for SNAP using evidence
based prediction) and Step2(ab-initio gene-prediction using SNAP and
augustus) do you have recommendations for further improving the gene
model?

Thanks and regards,
Parul Kudtarkar

> Hi Parul,
>
> In step one, if protein2genome isn't turned on, then the protein
> alignments wont be used to generate gene models. Carson said before to use
> protein2genome to generate gene models for your trainings set, but you
> should know that those data aren't being used right now.
>
> In step 2, you can include the est and protein evidence that you used in
> step one, and the ab-initio predictors will takes those data as hints to
> guide their predictions. Also, are you reannotating human here? I'm just
> wondering why the snap file is called Pult, but the augustus species model
> is human. Also, I think you should include the same masking files from
> step 1, otherwise the ab-initio predictors will be predicting on the
> unmasked sequence which will give you many spurious predictions.
>
> In step 3, I'm not certain what you mean by boot-strapping. The control
> file you sent for step 3 will just pass-through all of the data from
> before.
>
> In step 4, I think what you'll get is pretty close to what you already had
> in step 3. The gene models from step 3 are already based on the est and
> protein data from step 1, so without giving any different evidence or
> ab-initio predictors, I think that you will just get the same gene models
> that you got from step 3. Those gene models are what you should be using
> to train snap. Also, is this the same genome as in the other steps? The
> genome file here is called genome.linear.fa, but before it was called
> genome.fa.
>
> Step 5. So maker uses both evidence and ab-initio predictions to create
> models. If you don't give any evidence (EST or protein) maker will not
> annotate any gene models. You have also changed the augustus species model
> in this step, but I don't know what you've gained by going from one
> species to another. You should be training augustus with the gene models
> and then creating a new species model in augustus. As I understand it, the
> filter only operates on gene models, not ab-initio predictions or
> alignments, so it probably isn't doing anything the way you have it set.
>
> Step 6. I think step 5 and 6 should be combined. I don't know what you
> mean by boot-strapping here too.
>
> Hopefully that clears up some of the confusion with how maker works.
> Carson will probably have a lot of suggestions too.
>
> Thanks,
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 10:08 AM
> To: carsonhh at gmail.com
> Cc: Daniel Ence; maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
>
> Hi Carson,
>
> Once again thanks for a quick response. We expect to get 25,000 to 30,000
> genes.
> Here are the step
> Step1. EST and proteins are used to predict gene-models. the resulting
> file is used as training data-set for SNAP in step2. est2genome is turned
> ON
> Step2. Augustus and SNAP is used to predict genes.
> Step3. The results are re-annoated(boot-strap)
> Step4. EST and proteins are used to predict gene-models. The gff file from
> step3. is used as model_gff. The resulting file is used as training
> data-set for SNAP in step2
> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
> contig_size to 10kb
>
> Thanks and regards,
> Parul Kudtarkar
>
> I have attached the configuration file for each step.
>> Your output has no genes.  They've all been filtered out.  The gene
> predictions are left for reference purposes, but there are no gene models
>> in the file.  You need to look at the type columns in the GFF3 file -->
> match/match_part features are evidence and reference data but not
> models.
>> All models will have types gene/mRNA/exon/CDS.  For example if you just
> want gene models in your file you can use the gff3_merge script with the
> -g option, and it will only print out the gene models.
>> I think you may be misinterpreting what is happening at different steps,
> as well as how to read the result files.  Could you give me a detailed
> explanation of what you expect to get back together with your control
> files and I can walk you through the configuration, and indicate what to
> expect.  Also what was the report like from CEGMA. Could you include the
> report file that shows how complete your genome is and how fragmented it
> is?
>> Thanks,
>> Carson
>> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>Dear Carson,
>>>Thanks for a quick response. keep_preds is set to 0
>>>Though for previous step(ab-intio gene predictions keep_preds was set to
> 1, see Scaffold1_input.gff). I have also attached the output file
> Scaffold1_out.gff.
>>>Please advice.
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>> You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
>>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>>>> Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the
>>>>case,
>>>> just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>>>> Thanks,
>>>> Carson
>>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>Dear Carson,
>>>>>Thanks once again, we have limited experimental data with very short
>>>>> ESTs.
>>>>>CEGMA is useful for us to gauge our gene-model.
>>>>>On a different note to re-annotate genome(post evidence based
>>>>>prediction(used as training dataset)and abinitio gene-prediction).
> Here
>>>>>are the control parameters I am using with AED score set to 0.5,
>>>>> however
>>>>> I
>>>>>get predictions that includes the ones with AED score of 1.00 in
>>>>> resulting
>>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>> initial
>>>>>gff3 file.
>>>>>#-----Genome (Required for De-Novo Annotation)
>>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>> eukaryotic
>>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
> no
>>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>> no
>>>>>#-----MAKER Behavior Options
>>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
> 0
>>>>>and 1)
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>partial
>>>>>>at
>>>>>> best.  You should seriously consider using mRNAseq to capture those
> by
>>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>>trinity.
>>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
> size,
>>>>>>just
>>>>>> have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>>>>>> Thanks,
>>>>>> Carson
>>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
> N50
>>>>>>> of
>>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>> when
>>>>>>>filtering based on AED score 0.75 there are no gene models predicted
> despite the model_gff file has few genes with scores less than 0.75?
> Thanks and regards,
>>>>>>>Parul Kudtarkar
>>>>>>>> There are certain characteristics that are apparent in this
> contig.
>>>>>>>First
>>>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>>>have
>>>>>>>very short ESTs, and because of the lengths you are probably getting
> many
>>>>>>>> of them to align spuriously which produces very short gene models
> that
>>>>>>>are
>>>>>>>> more than likely false positives or at the very least just a piece
>>>>>>>>of
>>>>>>>>a
>>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>>> unless
>>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>> protein
>>>>>>>alignments also seem to be few and far between.  You probably need
> to
>>>>>>>add
>>>>>>>> more proteins from a couple of related species, and you might
> consider
>>>>>>>using protein2genome rather than est2genome as a predictor if you
> are
>>>>>>>still working to generate a training set. Also est2genome produced
> models
>>>>>>>> almost always have an AED score near 0 so mixing est2genome with
> the
>>>>>>>AED_threshold with such limited protein support does create an
> artificial
>>>>>>>> bias to get back very short and incomplete models.
>>>>>>>> How many contigs do you have in total and what is the N50 value
> for
>>>>>>>>the
>>>>>>>assembly? If you have a large number of very short contigs, you will
>>>>>>> get
>>>>>>>very inflated gene counts because you get genes split across contigs
>>>>>>> and
>>>>>>>many contigs tend t be subtle rearrangements of other contigs just
> assembled in a slightly different way (so you can get bits and
> pieces
>>>>>>> of
>>>>>>>the same genes just rearranged).  This scenario is another
>>>>>>> confounding
>>>>>>>factor if using the est2genome predictor with short ESTs.  I would
> recommend running CEGMA to get an estimate for the genome
>>>>>>> completeness
>>>>>>>as
>>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>>produced
>>>>>>>> is a percent of genes that are found complete (end to end) vs
> those
>>>>>>>> that
>>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
> shorter
>>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
> gives
>>>>>>>> a
>>>>>>>high partial percentage and a low complete percentage, then this
>>>>>>> pattern
>>>>>>>can be expected to be even more exaggerated for other genes in the
> genome.
>>>>>>>> If your genome is highly fragmented or proteins do not align well
> then
>>>>>>>there are other strategies.  For example, some vertebrate genomes
> end
>>>>>>> up
>>>>>>>having extremely fragmented assemblies (on the order of 100,000
> contigs),
>>>>>>>> and if they are distantly related to other annotated species few
>>>>>>>proteins
>>>>>>>> may align to the contigs because the introns in the alignments
> tend
>>>>>>>> to
>>>>>>>be
>>>>>>>> so long and exons so short that it pushes down the significance
> scores
>>>>>>>too
>>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
> only
>>>>>>>> way
>>>>>>>to get enough evidence to stitch gene models together.
>>>>>>>> Thanks,
>>>>>>>> Carson
>>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>>Dear Carson and Daniel,
>>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
> The
>>>>>>>input gff3 file was provided to option model_pred(see attached file
> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>> least
>>>>>>>>> 5
>>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>>> predicted
>>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>>attached
>>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>Thanks and regards,
>>>>>>>>>Parul Kudtarkar
>>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>just
>>>>>>>>>>want
>>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>>maker.
>>>>>>>>>>On
>>>>>>>>>> the other hand, if you are trying to build a dataset for
> training
>>>>>>>>>> gene
>>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>>> dataset
>>>>>>>>>>for
>>>>>>>>>> SNAP training.  There are a number of filters available. Just
> call
>>>>>>>>>> the
>>>>>>>script once without parameters to see the options.
>>>>>>>>>> Thanks,
>>>>>>>>>> Carson
>>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>wrote:
>>>>>>>>>>>Hi Parul,
>>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
> how
>>>>>>>you
>>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>>Daniel
>>>>>>>>>>>Daniel Ence
>>>>>>>>>>>Graduate Student
>>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>>University of Utah
>>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>>________________________________________
>>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>> Kudtarkar
>>>>>>>[parulk at caltech.edu]
>>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>>Also, are there any other parameters that are required when
> filtering
>>>>>>>based on AED score?
>>>>>>>>>>>> Hello Carson,
>>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
> models
>>>>>>>>>>>>at
>>>>>>>specific AED score.
>>>>>>>>>>>> Alternatively if I were to do this within maker with regards
> to
>>>>>>>>>>>>parameters
>>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>genes
>>>>>>>>>>>>gff3
>>>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
> 1
>>>>>>>>>>>>> is
>>>>>>>worst
>>>>>>>>>>>>> as
>>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
> parameter
>>>>>>>to
>>>>>>>>>>>>> require better matching to the evidence by setting it closer
> to
>>>>>>>>>>>>>0.
>>>>>>>>>>>>>You
>>>>>>>>>>>>> can
>>>>>>>>>>>>> also try to increase protein homology evidence as some of
> your
>>>>>>>calls
>>>>>>>>>>>>>may
>>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>>> --Carson
>>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>> based
>>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
> predictions, followed by boot-strapping. I would typically expect
> 20-30K
>>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>> indicating
>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>>predication/script to retain predictions with AED score 1 and if yes
>>>>>>>>>>>>>>how
>>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>>--
>>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
> -l
>>>>>>>>>>>>>>ab
>>>>>>>>>>>>>>.o
>>>>>>>rg
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>--
>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>>>>>>or
>>>>>>>>>>>g
>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>>>>>>or
>>>>>>>>>>>g
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
> .o
>>>>>>>>>>rg
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From parulk at caltech.edu  Thu Dec  6 15:51:42 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Thu, 6 Dec 2012 14:51:42 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB59B1@mxb2.hg.genetics.utah.edu>
References: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>,
	<2337.131.215.15.234.1354825698.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB59B1@mxb2.hg.genetics.utah.edu>
Message-ID: <4347.131.215.15.234.1354834302.squirrel@webmail.caltech.edu>

Dear Daniel,

Once again thanks for extensive help. We get over estimation of number of
genes at the end of step 2. So was wondering if there is a way to pick
only the best annotated. That been said assembly, ESTs and proteins are
not good and I am currently in process of running cegma.

Also for step 2(ab-initio gene-prediction using SNAP and Augustus) is it
best to turn off  keep_preds to remove any possible false-positives. Also
should est2genome turned ON? Of course as pointed in previous email use
est,proteins apart from training data to generate better gene-model and
repeat masking as well to mask repeats for ab-initio predictors?
I believe while running gff3_merge it is best to use option -g to get only
the gene-predictions and filter evidence.

Thanks and regards,
Parul Kudtarkar

> Hi Parul,
> I dont' really have many suggestions for improving the gene models after
> the annotation is done. Annotation is very dependent on the data you have
> at hand (the assembly, ESTs and proteins). One thing you could do to get
> more annotations is to run something like iprscan on the ab-initio
> predictions that didn't overlap any evidence and look for predictions that
> contain a pfam domain. Then you can send those predictions back through
> maker and promote them to gene model status.
>
> Do you have the CEGMA results that Carson asked about? That really will
> tell you what kind of annotation results you can expect. If the assembly
> doesn't have an N50 greater than the expected median gene size, then you
> can't expect very good results from automated annotation.
>
> Thanks,
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 1:28 PM
> To: Daniel Ence
> Cc: maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
>
> Dear Daniel,
>
> Thanks for clearing doubts. For augustus I am using the closest
> species(lamprey) to species we are annotating. For SNAP the training
> set(hmm file) is generated using predictions made from evidence based
> gene-predictions(sorry the file name was mis-leading). I think STEP 3-6
> are not required(more or less repetitive without further improving
> genemodel). Post Step 1(generating training data for SNAP using evidence
> based prediction) and Step2(ab-initio gene-prediction using SNAP and
> augustus) do you have recommendations for further improving the gene
> model?
>
> Thanks and regards,
> Parul Kudtarkar
>
>> Hi Parul,
>>
>> In step one, if protein2genome isn't turned on, then the protein
>> alignments wont be used to generate gene models. Carson said before to
>> use
>> protein2genome to generate gene models for your trainings set, but you
>> should know that those data aren't being used right now.
>>
>> In step 2, you can include the est and protein evidence that you used in
>> step one, and the ab-initio predictors will takes those data as hints to
>> guide their predictions. Also, are you reannotating human here? I'm just
>> wondering why the snap file is called Pult, but the augustus species
>> model
>> is human. Also, I think you should include the same masking files from
>> step 1, otherwise the ab-initio predictors will be predicting on the
>> unmasked sequence which will give you many spurious predictions.
>>
>> In step 3, I'm not certain what you mean by boot-strapping. The control
>> file you sent for step 3 will just pass-through all of the data from
>> before.
>>
>> In step 4, I think what you'll get is pretty close to what you already
>> had
>> in step 3. The gene models from step 3 are already based on the est and
>> protein data from step 1, so without giving any different evidence or
>> ab-initio predictors, I think that you will just get the same gene
>> models
>> that you got from step 3. Those gene models are what you should be using
>> to train snap. Also, is this the same genome as in the other steps? The
>> genome file here is called genome.linear.fa, but before it was called
>> genome.fa.
>>
>> Step 5. So maker uses both evidence and ab-initio predictions to create
>> models. If you don't give any evidence (EST or protein) maker will not
>> annotate any gene models. You have also changed the augustus species
>> model
>> in this step, but I don't know what you've gained by going from one
>> species to another. You should be training augustus with the gene models
>> and then creating a new species model in augustus. As I understand it,
>> the
>> filter only operates on gene models, not ab-initio predictions or
>> alignments, so it probably isn't doing anything the way you have it set.
>>
>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>> mean by boot-strapping here too.
>>
>> Hopefully that clears up some of the confusion with how maker works.
>> Carson will probably have a lot of suggestions too.
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: Parul Kudtarkar [parulk at caltech.edu]
>> Sent: Thursday, December 06, 2012 10:08 AM
>> To: carsonhh at gmail.com
>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>> Subject: Re: [maker-devel] AED score
>>
>> Hi Carson,
>>
>> Once again thanks for a quick response. We expect to get 25,000 to
>> 30,000
>> genes.
>> Here are the step
>> Step1. EST and proteins are used to predict gene-models. the resulting
>> file is used as training data-set for SNAP in step2. est2genome is
>> turned
>> ON
>> Step2. Augustus and SNAP is used to predict genes.
>> Step3. The results are re-annoated(boot-strap)
>> Step4. EST and proteins are used to predict gene-models. The gff file
>> from
>> step3. is used as model_gff. The resulting file is used as training
>> data-set for SNAP in step2
>> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>> contig_size to 10kb
>>
>> Thanks and regards,
>> Parul Kudtarkar
>>
>> I have attached the configuration file for each step.
>>> Your output has no genes.  They've all been filtered out.  The gene
>> predictions are left for reference purposes, but there are no gene
>> models
>>> in the file.  You need to look at the type columns in the GFF3 file -->
>> match/match_part features are evidence and reference data but not
>> models.
>>> All models will have types gene/mRNA/exon/CDS.  For example if you just
>> want gene models in your file you can use the gff3_merge script with the
>> -g option, and it will only print out the gene models.
>>> I think you may be misinterpreting what is happening at different
>>> steps,
>> as well as how to read the result files.  Could you give me a detailed
>> explanation of what you expect to get back together with your control
>> files and I can walk you through the configuration, and indicate what to
>> expect.  Also what was the report like from CEGMA. Could you include the
>> report file that shows how complete your genome is and how fragmented it
>> is?
>>> Thanks,
>>> Carson
>>> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>Dear Carson,
>>>>Thanks for a quick response. keep_preds is set to 0
>>>>Though for previous step(ab-intio gene predictions keep_preds was set
>>>> to
>> 1, see Scaffold1_input.gff). I have also attached the output file
>> Scaffold1_out.gff.
>>>>Please advice.
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>> You should always get all predictions, but should only get models
>> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>> keep_preds set.
>>>>> Do you have keeps_preds set or gene models with AED values above your
>> threshold (not match/match_part features)?  If the first one is the
>>>>>case,
>>>>> just set it to 0.  If the second one in the case, could you send me
>> example GFF3?
>>>>> Thanks,
>>>>> Carson
>>>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>Dear Carson,
>>>>>>Thanks once again, we have limited experimental data with very short
>>>>>> ESTs.
>>>>>>CEGMA is useful for us to gauge our gene-model.
>>>>>>On a different note to re-annotate genome(post evidence based
>>>>>>prediction(used as training dataset)and abinitio gene-prediction).
>> Here
>>>>>>are the control parameters I am using with AED score set to 0.5,
>>>>>> however
>>>>>> I
>>>>>>get predictions that includes the ones with AED score of 1.00 in
>>>>>> resulting
>>>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>> initial
>>>>>>gff3 file.
>>>>>>#-----Genome (Required for De-Novo Annotation)
>>>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>> eukaryotic
>>>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0
>>>>>> =
>> no
>>>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>> no
>>>>>>#-----MAKER Behavior Options
>>>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
>> 0
>>>>>>and 1)
>>>>>>Thanks and regards,
>>>>>>Parul Kudtarkar
>>>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>partial
>>>>>>>at
>>>>>>> best.  You should seriously consider using mRNAseq to capture those
>> by
>>>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>>>trinity.
>>>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
>> size,
>>>>>>>just
>>>>>>> have maker skip them by setting the min_contig filter in the
>> maker_opts.ctl file.
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
>> N50
>>>>>>>> of
>>>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>>> when
>>>>>>>>filtering based on AED score 0.75 there are no gene models
>>>>>>>> predicted
>> despite the model_gff file has few genes with scores less than 0.75?
>> Thanks and regards,
>>>>>>>>Parul Kudtarkar
>>>>>>>>> There are certain characteristics that are apparent in this
>> contig.
>>>>>>>>First
>>>>>>>>> it seems to be repeat rich with a very low gene density.  You
>>>>>>>>> also
>>>>>>>>>have
>>>>>>>>very short ESTs, and because of the lengths you are probably
>>>>>>>> getting
>> many
>>>>>>>>> of them to align spuriously which produces very short gene models
>> that
>>>>>>>>are
>>>>>>>>> more than likely false positives or at the very least just a
>>>>>>>>> piece
>>>>>>>>>of
>>>>>>>>>a
>>>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>> unless
>>>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>> protein
>>>>>>>>alignments also seem to be few and far between.  You probably need
>> to
>>>>>>>>add
>>>>>>>>> more proteins from a couple of related species, and you might
>> consider
>>>>>>>>using protein2genome rather than est2genome as a predictor if you
>> are
>>>>>>>>still working to generate a training set. Also est2genome produced
>> models
>>>>>>>>> almost always have an AED score near 0 so mixing est2genome with
>> the
>>>>>>>>AED_threshold with such limited protein support does create an
>> artificial
>>>>>>>>> bias to get back very short and incomplete models.
>>>>>>>>> How many contigs do you have in total and what is the N50 value
>> for
>>>>>>>>>the
>>>>>>>>assembly? If you have a large number of very short contigs, you
>>>>>>>> will
>>>>>>>> get
>>>>>>>>very inflated gene counts because you get genes split across
>>>>>>>> contigs
>>>>>>>> and
>>>>>>>>many contigs tend t be subtle rearrangements of other contigs just
>> assembled in a slightly different way (so you can get bits and
>> pieces
>>>>>>>> of
>>>>>>>>the same genes just rearranged).  This scenario is another
>>>>>>>> confounding
>>>>>>>>factor if using the est2genome predictor with short ESTs.  I would
>> recommend running CEGMA to get an estimate for the genome
>>>>>>>> completeness
>>>>>>>>as
>>>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>>>produced
>>>>>>>>> is a percent of genes that are found complete (end to end) vs
>> those
>>>>>>>>> that
>>>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
>> shorter
>>>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
>> gives
>>>>>>>>> a
>>>>>>>>high partial percentage and a low complete percentage, then this
>>>>>>>> pattern
>>>>>>>>can be expected to be even more exaggerated for other genes in the
>> genome.
>>>>>>>>> If your genome is highly fragmented or proteins do not align well
>> then
>>>>>>>>there are other strategies.  For example, some vertebrate genomes
>> end
>>>>>>>> up
>>>>>>>>having extremely fragmented assemblies (on the order of 100,000
>> contigs),
>>>>>>>>> and if they are distantly related to other annotated species few
>>>>>>>>proteins
>>>>>>>>> may align to the contigs because the introns in the alignments
>> tend
>>>>>>>>> to
>>>>>>>>be
>>>>>>>>> so long and exons so short that it pushes down the significance
>> scores
>>>>>>>>too
>>>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
>> only
>>>>>>>>> way
>>>>>>>>to get enough evidence to stitch gene models together.
>>>>>>>>> Thanks,
>>>>>>>>> Carson
>>>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>>>Dear Carson and Daniel,
>>>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
>> The
>>>>>>>>input gff3 file was provided to option model_pred(see attached file
>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>> least
>>>>>>>>>> 5
>>>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>>>> predicted
>>>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>>>attached
>>>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>Thanks and regards,
>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>>just
>>>>>>>>>>>want
>>>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>>>maker.
>>>>>>>>>>>On
>>>>>>>>>>> the other hand, if you are trying to build a dataset for
>> training
>>>>>>>>>>> gene
>>>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>>>> dataset
>>>>>>>>>>>for
>>>>>>>>>>> SNAP training.  There are a number of filters available. Just
>> call
>>>>>>>>>>> the
>>>>>>>>script once without parameters to see the options.
>>>>>>>>>>> Thanks,
>>>>>>>>>>> Carson
>>>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>>wrote:
>>>>>>>>>>>>Hi Parul,
>>>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
>> how
>>>>>>>>you
>>>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>>>Daniel
>>>>>>>>>>>>Daniel Ence
>>>>>>>>>>>>Graduate Student
>>>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>>>University of Utah
>>>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>>>________________________________________
>>>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>> Kudtarkar
>>>>>>>>[parulk at caltech.edu]
>>>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>>>Also, are there any other parameters that are required when
>> filtering
>>>>>>>>based on AED score?
>>>>>>>>>>>>> Hello Carson,
>>>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
>> models
>>>>>>>>>>>>>at
>>>>>>>>specific AED score.
>>>>>>>>>>>>> Alternatively if I were to do this within maker with regards
>> to
>>>>>>>>>>>>>parameters
>>>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>>genes
>>>>>>>>>>>>>gff3
>>>>>>>>>>>>> file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>> threshold?
>>>>>>>>Thanks and regards,
>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
>> 1
>>>>>>>>>>>>>> is
>>>>>>>>worst
>>>>>>>>>>>>>> as
>>>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
>> parameter
>>>>>>>>to
>>>>>>>>>>>>>> require better matching to the evidence by setting it closer
>> to
>>>>>>>>>>>>>>0.
>>>>>>>>>>>>>>You
>>>>>>>>>>>>>> can
>>>>>>>>>>>>>> also try to increase protein homology evidence as some of
>> your
>>>>>>>>calls
>>>>>>>>>>>>>>may
>>>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>>>> --Carson
>>>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>>> based
>>>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
>> predictions, followed by boot-strapping. I would typically expect
>> 20-30K
>>>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>>> indicating
>>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>>>predication/script to retain predictions with AED score 1 and if
>>>>>>>> yes
>>>>>>>>>>>>>>>how
>>>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>>>--
>>>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>> -l
>>>>>>>>>>>>>>>ab
>>>>>>>>>>>>>>>.o
>>>>>>>>rg
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>--
>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>> b.
>>>>>>>>>>>>or
>>>>>>>>>>>>g
>>>>>>>>_______________________________________________
>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>> b.
>>>>>>>>>>>>or
>>>>>>>>>>>>g
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>> .o
>>>>>>>>>>>rg
>>>>>>>>>>--
>>>>>>>>>>Scientific Programmer
>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>Beckman Institute,
>>>>>>>>>>California Institute of Technology
>>>>>>>>>>http://www.spbase.org
>>>>>>>>--
>>>>>>>>Scientific Programmer
>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>Beckman Institute,
>>>>>>>>California Institute of Technology
>>>>>>>>http://www.spbase.org
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>>
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From parulk at caltech.edu  Thu Dec  6 10:08:23 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Thu, 6 Dec 2012 09:08:23 -0800 (PST)
Subject: [maker-devel] AED score
Message-ID: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>

Hi Carson,

Once again thanks for a quick response. We expect to get 25,000 to 30,000
genes.
Here are the step
Step1. EST and proteins are used to predict gene-models. the resulting
file is used as training data-set for SNAP in step2. est2genome is turned
ON
Step2. Augustus and SNAP is used to predict genes.
Step3. The results are re-annoated(boot-strap)
Step4. EST and proteins are used to predict gene-models. The gff file from
step3. is used as model_gff. The resulting file is used as training
data-set for SNAP in step2
Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
contig_size to 10kb

Thanks and regards,
Parul Kudtarkar

I have attached the configuration file for each step.
> Your output has no genes.  They've all been filtered out.  The gene
predictions are left for reference purposes, but there are no gene models
> in the file.  You need to look at the type columns in the GFF3 file -->
match/match_part features are evidence and reference data but not
models.
> All models will have types gene/mRNA/exon/CDS.  For example if you just
want gene models in your file you can use the gff3_merge script with the
-g option, and it will only print out the gene models.
> I think you may be misinterpreting what is happening at different steps,
as well as how to read the result files.  Could you give me a detailed
explanation of what you expect to get back together with your control
files and I can walk you through the configuration, and indicate what to
expect.  Also what was the report like from CEGMA. Could you include the
report file that shows how complete your genome is and how fragmented it
is?
> Thanks,
> Carson
> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>Dear Carson,
>>Thanks for a quick response. keep_preds is set to 0
>>Though for previous step(ab-intio gene predictions keep_preds was set to
1, see Scaffold1_input.gff). I have also attached the output file
Scaffold1_out.gff.
>>Please advice.
>>Thanks and regards,
>>Parul Kudtarkar
>>> You should always get all predictions, but should only get models
(match/match_part) with AED scores less than 0.5.  You should never get
>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
keep_preds set.
>>> Do you have keeps_preds set or gene models with AED values above your
threshold (not match/match_part features)?  If the first one is the
>>>case,
>>> just set it to 0.  If the second one in the case, could you send me
example GFF3?
>>> Thanks,
>>> Carson
>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>Dear Carson,
>>>>Thanks once again, we have limited experimental data with very short
>>>> ESTs.
>>>>CEGMA is useful for us to gauge our gene-model.
>>>>On a different note to re-annotate genome(post evidence based
>>>>prediction(used as training dataset)and abinitio gene-prediction).
Here
>>>>are the control parameters I am using with AED score set to 0.5,
>>>> however
>>>> I
>>>>get predictions that includes the ones with AED score of 1.00 in
>>>> resulting
>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>> initial
>>>>gff3 file.
>>>>#-----Genome (Required for De-Novo Annotation)
>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>> eukaryotic
>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
no
>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>> no
>>>>#-----MAKER Behavior Options
>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
0
>>>>and 1)
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>partial
>>>>>at
>>>>> best.  You should seriously consider using mRNAseq to capture those
by
>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>trinity.
>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
size,
>>>>>just
>>>>> have maker skip them by setting the min_contig filter in the
maker_opts.ctl file.
>>>>> Thanks,
>>>>> Carson
>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
N50
>>>>>> of
>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>> when
>>>>>>filtering based on AED score 0.75 there are no gene models predicted
despite the model_gff file has few genes with scores less than 0.75?
Thanks and regards,
>>>>>>Parul Kudtarkar
>>>>>>> There are certain characteristics that are apparent in this
contig.
>>>>>>First
>>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>>have
>>>>>>very short ESTs, and because of the lengths you are probably getting
many
>>>>>>> of them to align spuriously which produces very short gene models
that
>>>>>>are
>>>>>>> more than likely false positives or at the very least just a piece
>>>>>>>of
>>>>>>>a
>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>> unless
>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>> protein
>>>>>>alignments also seem to be few and far between.  You probably need
to
>>>>>>add
>>>>>>> more proteins from a couple of related species, and you might
consider
>>>>>>using protein2genome rather than est2genome as a predictor if you
are
>>>>>>still working to generate a training set. Also est2genome produced
models
>>>>>>> almost always have an AED score near 0 so mixing est2genome with
the
>>>>>>AED_threshold with such limited protein support does create an
artificial
>>>>>>> bias to get back very short and incomplete models.
>>>>>>> How many contigs do you have in total and what is the N50 value
for
>>>>>>>the
>>>>>>assembly? If you have a large number of very short contigs, you will
>>>>>> get
>>>>>>very inflated gene counts because you get genes split across contigs
>>>>>> and
>>>>>>many contigs tend t be subtle rearrangements of other contigs just
assembled in a slightly different way (so you can get bits and
pieces
>>>>>> of
>>>>>>the same genes just rearranged).  This scenario is another
>>>>>> confounding
>>>>>>factor if using the est2genome predictor with short ESTs.  I would
recommend running CEGMA to get an estimate for the genome
>>>>>> completeness
>>>>>>as
>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>produced
>>>>>>> is a percent of genes that are found complete (end to end) vs
those
>>>>>>> that
>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
shorter
>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
gives
>>>>>>> a
>>>>>>high partial percentage and a low complete percentage, then this
>>>>>> pattern
>>>>>>can be expected to be even more exaggerated for other genes in the
genome.
>>>>>>> If your genome is highly fragmented or proteins do not align well
then
>>>>>>there are other strategies.  For example, some vertebrate genomes
end
>>>>>> up
>>>>>>having extremely fragmented assemblies (on the order of 100,000
contigs),
>>>>>>> and if they are distantly related to other annotated species few
>>>>>>proteins
>>>>>>> may align to the contigs because the introns in the alignments
tend
>>>>>>> to
>>>>>>be
>>>>>>> so long and exons so short that it pushes down the significance
scores
>>>>>>too
>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
only
>>>>>>> way
>>>>>>to get enough evidence to stitch gene models together.
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>Dear Carson and Daniel,
>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
The
>>>>>>input gff3 file was provided to option model_pred(see attached file
Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>> least
>>>>>>>> 5
>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>> predicted
>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>attached
>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>Thanks and regards,
>>>>>>>>Parul Kudtarkar
>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>just
>>>>>>>>>want
>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>maker.
>>>>>>>>>On
>>>>>>>>> the other hand, if you are trying to build a dataset for
training
>>>>>>>>> gene
>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>> dataset
>>>>>>>>>for
>>>>>>>>> SNAP training.  There are a number of filters available. Just
call
>>>>>>>>> the
>>>>>>script once without parameters to see the options.
>>>>>>>>> Thanks,
>>>>>>>>> Carson
>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>wrote:
>>>>>>>>>>Hi Parul,
>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
how
>>>>>>you
>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>Daniel
>>>>>>>>>>Daniel Ence
>>>>>>>>>>Graduate Student
>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>University of Utah
>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>________________________________________
>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>> Kudtarkar
>>>>>>[parulk at caltech.edu]
>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>Also, are there any other parameters that are required when
filtering
>>>>>>based on AED score?
>>>>>>>>>>> Hello Carson,
>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
models
>>>>>>>>>>>at
>>>>>>specific AED score.
>>>>>>>>>>> Alternatively if I were to do this within maker with regards
to
>>>>>>>>>>>parameters
>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>genes
>>>>>>>>>>>gff3
>>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>>Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
1
>>>>>>>>>>>> is
>>>>>>worst
>>>>>>>>>>>> as
>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
parameter
>>>>>>to
>>>>>>>>>>>> require better matching to the evidence by setting it closer
to
>>>>>>>>>>>>0.
>>>>>>>>>>>>You
>>>>>>>>>>>> can
>>>>>>>>>>>> also try to increase protein homology evidence as some of
your
>>>>>>calls
>>>>>>>>>>>>may
>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>> --Carson
>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>> based
>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
predictions, followed by boot-strapping. I would typically expect
20-30K
>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>> indicating
>>>>>>>>>>>>> too
>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>predication/script to retain predictions with AED score 1 and if yes
>>>>>>>>>>>>>how
>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>--
>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
-l
>>>>>>>>>>>>>ab
>>>>>>>>>>>>>.o
>>>>>>rg
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>--
>>>>>>>>>>Scientific Programmer
>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>Beckman Institute,
>>>>>>>>>>California Institute of Technology
>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
b.
>>>>>>>>>>or
>>>>>>>>>>g
>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
b.
>>>>>>>>>>or
>>>>>>>>>>g
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
.o
>>>>>>>>>rg
>>>>>>>>--
>>>>>>>>Scientific Programmer
>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>Beckman Institute,
>>>>>>>>California Institute of Technology
>>>>>>>>http://www.spbase.org
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org

--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org


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From carsonhh at gmail.com  Fri Dec  7 08:22:10 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 07 Dec 2012 10:22:10 -0500
Subject: [maker-devel] AED score
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>
Message-ID: <CCE76039.16D5C%carsonhh@gmail.com>

Just to add to Daniels comments.

Things to change in step 1:
> protein= <just try and add more protein evidence in general>
> est2genome=0
> protein2genome=1
> split_hit=20000
> min_contig=50000

Reasoning:
> Your ESTs are very short especially if this is a lamprey species which have
> very long introns and really short exons.  In lamprey (i.e. Petromyzon
> marinus), genes tend to be very long (remember gene lengths include introns
> and UTR and is not just the size of the coding sequence), so contigs shorter
> than 50kb are useless for training as you are unlikely to get nice complete
> gene models on those.  Also lampreys have very long introns, so you have to
> allow for bigger introns in alignments (split_hit parameter).  Finally add as
> much protein evidence from as many sources as possible.  Your maker training
> run will take a long time as proteins take forever to align, but because of
> the evolutionary distance of lamprey from everything else and the short exon
> structure of its genome, very little aligns directly to its genome from other
> deuterstome and vertebrate species.  I'm assuming this is a lamprey species
> because of what you said about the  augustus species file you are using.
> Really the only thing closely related to lampreys unfortunately are other
> lampreys.  Lancelets, hagfish, and sharks are not closely related to lamprey
> (while they branch closely together on the tree of life, there are too many
> years since the last common ancestor).  So while they may have similar issues
> related to annotation (long introns and short exons etc.) they will not really
> match that well for the gene predictor or even protein alignments.

Additional note:
> I have training files for the lamprey species Petromyzon marinus for both
> Augustus and SNAP that I could share with you in a few week, when the genome
> publication is is released.  But before that happens, new gene models will be
> available  through the UCSC browser (hopefully within a couple of weeks), and
> gene models are already available through ENSEMBL.  Get those protein files
> for training, it may be a big help for you.  If you want early access to the
> lamprey training files for Augustus and SNAP, you would have to request it
> from Weiming Li at Michigan State University (the head of that genome
> project).
> 


Things to change in step 2:
> Optimally you would be doing de novo training using mRNAseq results, but with
> on;ly sparse protein alignments and such a fragmented assembly, you are
> probably better off just trying to adapt the human HMM files.  They won't
> match that well, but you probably won't have the evidence for De Novo
> training.  First make a copy of the augustus human species directory and
> rename it to lamprey (cp -R  ?/augustus/config/species/human
> ?/augustus/config/species/lamprey).  Use it as the base species for retraining
> augustus using your new models.  You will have to edit multiple files in the
> directory after you copy it so that they no longer say human or homo sapiens
> internally or in the file name.  Use maker2zff to generate the filtered ZFF
> file for training SNAP, but don't train SNAP.  Rather use the training file to
> better train Augustus info here (just ignore the CEGMA part) -->
> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
> 
> MAKE a backup of the step 1 maker output directory and run step 2 in the old
> step 1 directory (this allows you to change the parameters and reuse files
> form step 1 so you don't have to recalculate all the protein and EST
> alignments).  So control files for step 2 are identical to step 1 except for
> these parameters.
> 
> protein2genome=0
> augustus_species=lamprey
> snaphmm=lamprey.hmm #optional if you decide to use SNAP
> 
> Don't both training SNAP here as you probably won't have enough data and you
> assembly is too fragmented for it to work well, so just stick to augustus.
> Try SNAP if you want just to see how well it works.  Manually open up the
> largest contigs in a viewer to look at the models produced from the MAKER run
> to see if they look reasonable (this will also help you decide whether to keep
> SNAP).
> 

Things to change in step 3:
> Step 3 should just be a clone of step 2 as it is bootstrapping.  But make
> copies of ?/augustus/config/species/lamprey and save it to
> ?/augustus/config/species/lamprey2 (editing all the files and names as you did
> in step 2). This way you don't loose that training data if you decide to step
> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
> 
> augustus_species=lamprey2
> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
> 
> Make a backup of Step 2 and run step 3 in the old Step 2 directory (This is
> for file reuse, so the step will run fast).  This must be the exact same step
> directory as step 2 for the reuse trick to work.
> 
> Manually review the models and if you are satisfied move to step 4.  Also note
> that most parameters including the protein, EST, and repeats should not change
> from step1-step3, and should not be removed for step 4 either, you can add
> more evidence, but don't remove evidence (like the repeats).
> 
> 
Things to change in step 4:
> For this step, just set min_contig=10000 and rerun MAKER inside the step 3
> directory to get the smaller contigs annotated.  This should be your final
> step, although you can try altering other parameters or adding more evidence
> sources here etc.
> 
> 
For other things to keep in mind, you should consider taking extra time to
build a comprehensive library of repeats for your species, I know that
Petromyzon marinus was virtually unannotatable until we had a very deep
repeat library built for it.  Any repeat library should be used in all
steps.  Also for lamprey, you will expect between 20,000-30,000 genes both
because of your assemblies fragmentation and because of some ancestral
genome duplication.  Also be aware that lampreys appear to undergo
programmed genome loss in somatic tissues, so any gene count you get is only
going to represent a maximum of 75-80% of all genes unless the assembly is
derived from germline tissue.

Thanks,
Carson


> 
On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:

> Hi Parul, 
> 
> In step one, if protein2genome isn't turned on, then the protein alignments
> wont be used to generate gene models. Carson said before to use protein2genome
> to generate gene models for your trainings set, but you should know that those
> data aren't being used right now.
> 
> In step 2, you can include the est and protein evidence that you used in step
> one, and the ab-initio predictors will takes those data as hints to guide
> their predictions. Also, are you reannotating human here? I'm just wondering
> why the snap file is called Pult, but the augustus species model is human.
> Also, I think you should include the same masking files from step 1, otherwise
> the ab-initio predictors will be predicting on the unmasked sequence which
> will give you many spurious predictions.
> 
> In step 3, I'm not certain what you mean by boot-strapping. The control file
> you sent for step 3 will just pass-through all of the data from before.
> 
> In step 4, I think what you'll get is pretty close to what you already had in
> step 3. The gene models from step 3 are already based on the est and protein
> data from step 1, so without giving any different evidence or ab-initio
> predictors, I think that you will just get the same gene models that you got
> from step 3. Those gene models are what you should be using to train snap.
> Also, is this the same genome as in the other steps? The genome file here is
> called genome.linear.fa, but before it was called genome.fa.
> 
> Step 5. So maker uses both evidence and ab-initio predictions to create
> models. If you don't give any evidence (EST or protein) maker will not
> annotate any gene models. You have also changed the augustus species model in
> this step, but I don't know what you've gained by going from one species to
> another. You should be training augustus with the gene models and then
> creating a new species model in augustus. As I understand it, the filter only
> operates on gene models, not ab-initio predictions or alignments, so it
> probably isn't doing anything the way you have it set.
> 
> Step 6. I think step 5 and 6 should be combined. I don't know what you mean by
> boot-strapping here too.
> 
> Hopefully that clears up some of the confusion with how maker works. Carson
> will probably have a lot of suggestions too.
> 
> Thanks,
> Daniel 
> 
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 10:08 AM
> To: carsonhh at gmail.com
> Cc: Daniel Ence; maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
> 
> Hi Carson,
> 
> Once again thanks for a quick response. We expect to get 25,000 to 30,000
> genes.
> Here are the step
> Step1. EST and proteins are used to predict gene-models. the resulting
> file is used as training data-set for SNAP in step2. est2genome is turned
> ON
> Step2. Augustus and SNAP is used to predict genes.
> Step3. The results are re-annoated(boot-strap)
> Step4. EST and proteins are used to predict gene-models. The gff file from
> step3. is used as model_gff. The resulting file is used as training
> data-set for SNAP in step2
> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
> contig_size to 10kb
> 
> Thanks and regards,
> Parul Kudtarkar
> 
> I have attached the configuration file for each step.
>>  Your output has no genes.  They've all been filtered out.  The gene
> predictions are left for reference purposes, but there are no gene models
>>  in the file.  You need to look at the type columns in the GFF3 file -->
> match/match_part features are evidence and reference data but not
> models.
>>  All models will have types gene/mRNA/exon/CDS.  For example if you just
> want gene models in your file you can use the gff3_merge script with the
> -g option, and it will only print out the gene models.
>>  I think you may be misinterpreting what is happening at different steps,
> as well as how to read the result files.  Could you give me a detailed
> explanation of what you expect to get back together with your control
> files and I can walk you through the configuration, and indicate what to
> expect.  Also what was the report like from CEGMA. Could you include the
> report file that shows how complete your genome is and how fragmented it
> is?
>>  Thanks,
>>  Carson
>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>> Dear Carson,
>>> Thanks for a quick response. keep_preds is set to 0
>>> Though for previous step(ab-intio gene predictions keep_preds was set to
> 1, see Scaffold1_input.gff). I have also attached the output file
> Scaffold1_out.gff.
>>> Please advice.
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>>  You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>>>>  Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the
>>>> case,
>>>>  just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>>>>  Thanks,
>>>>  Carson
>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>> Dear Carson,
>>>>> Thanks once again, we have limited experimental data with very short
>>>>>  ESTs.
>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>> On a different note to re-annotate genome(post evidence based
>>>>> prediction(used as training dataset)and abinitio gene-prediction).
> Here
>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>  however
>>>>>  I
>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>  resulting
>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>  initial
>>>>> gff3 file.
>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>  eukaryotic
>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
> no
>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>  no
>>>>> #-----MAKER Behavior Options
>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
> 0
>>>>> and 1)
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>> partial
>>>>>> at
>>>>>>  best.  You should seriously consider using mRNAseq to capture those
> by
>>>>>>  using maker's est_gff option to pass in results from cufflinks or
>>>>>> trinity.
>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
> size,
>>>>>> just
>>>>>>  have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>>>>>>  Thanks,
>>>>>>  Carson
>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Thanks for the guidance Carson, total contig size is 330,611 with
> N50
>>>>>>>  of
>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>>  when
>>>>>>> filtering based on AED score 0.75 there are no gene models predicted
> despite the model_gff file has few genes with scores less than 0.75?
> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>  There are certain characteristics that are apparent in this
> contig.
>>>>>>> First
>>>>>>>  it seems to be repeat rich with a very low gene density.  You also
>>>>>>> have
>>>>>>> very short ESTs, and because of the lengths you are probably getting
> many
>>>>>>>  of them to align spuriously which produces very short gene models
> that
>>>>>>> are
>>>>>>>  more than likely false positives or at the very least just a piece
>>>>>>> of
>>>>>>> a
>>>>>>> gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>  unless
>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>  protein
>>>>>>> alignments also seem to be few and far between.  You probably need
> to
>>>>>>> add
>>>>>>>  more proteins from a couple of related species, and you might
> consider
>>>>>>> using protein2genome rather than est2genome as a predictor if you
> are
>>>>>>> still working to generate a training set. Also est2genome produced
> models
>>>>>>>  almost always have an AED score near 0 so mixing est2genome with
> the
>>>>>>> AED_threshold with such limited protein support does create an
> artificial
>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>  How many contigs do you have in total and what is the N50 value
> for
>>>>>>> the
>>>>>>> assembly? If you have a large number of very short contigs, you will
>>>>>>>  get
>>>>>>> very inflated gene counts because you get genes split across contigs
>>>>>>>  and
>>>>>>> many contigs tend t be subtle rearrangements of other contigs just
> assembled in a slightly different way (so you can get bits and
> pieces
>>>>>>>  of
>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>  confounding
>>>>>>> factor if using the est2genome predictor with short ESTs.  I would
> recommend running CEGMA to get an estimate for the genome
>>>>>>>  completeness
>>>>>>> as
>>>>>>>  well as get an estimate of fragmentation as one of the statistics
>>>>>>> produced
>>>>>>>  is a percent of genes that are found complete (end to end) vs
> those
>>>>>>>  that
>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to be
> shorter
>>>>>>>  and less intron rich than other genes in the genome, so if CEGMA
> gives
>>>>>>>  a
>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>  pattern
>>>>>>> can be expected to be even more exaggerated for other genes in the
> genome.
>>>>>>>  If your genome is highly fragmented or proteins do not align well
> then
>>>>>>> there are other strategies.  For example, some vertebrate genomes
> end
>>>>>>>  up
>>>>>>> having extremely fragmented assemblies (on the order of 100,000
> contigs),
>>>>>>>  and if they are distantly related to other annotated species few
>>>>>>> proteins
>>>>>>>  may align to the contigs because the introns in the alignments
> tend
>>>>>>>  to
>>>>>>> be
>>>>>>>  so long and exons so short that it pushes down the significance
> scores
>>>>>>> too
>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
> only
>>>>>>>  way
>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Dear Carson and Daniel,
>>>>>>> Thanks. I ran sample file for filtering genes based on AED score.
> The
>>>>>>> input gff3 file was provided to option model_pred(see attached file
> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>  least
>>>>>>>  5
>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>  predicted
>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>> attached
>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>> just
>>>>>>> want
>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>> maker.
>>>>>>> On
>>>>>>>  the other hand, if you are trying to build a dataset for
> training
>>>>>>>  gene
>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>  dataset
>>>>>>> for
>>>>>>>  SNAP training.  There are a number of filters available. Just
> call
>>>>>>>  the
>>>>>>> script once without parameters to see the options.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>> wrote:
>>>>>>> Hi Parul,
>>>>>>> I think the way you described (with the maker_opts.ctl file) is
> how
>>>>>>> you
>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>> Daniel
>>>>>>> Daniel Ence
>>>>>>> Graduate Student
>>>>>>> Eccles Institute of Human Genetics
>>>>>>> University of Utah
>>>>>>> 15 North 2030 East, Room 2100
>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>> ________________________________________
>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>  Kudtarkar
>>>>>>> [parulk at caltech.edu]
>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>> To: Parul Kudtarkar
>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>> Also, are there any other parameters that are required when
> filtering
>>>>>>> based on AED score?
>>>>>>>  Hello Carson,
>>>>>>>  Just to confirm, Is there a script that would filter gene
> models
>>>>>>> at
>>>>>>> specific AED score.
>>>>>>>  Alternatively if I were to do this within maker with regards
> to
>>>>>>> parameters
>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>> genes
>>>>>>> gff3
>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>> Thanks and regards,
>>>>>>>  Parul Kudtarkar
>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
> 1
>>>>>>>  is
>>>>>>> worst
>>>>>>>  as
>>>>>>>  it is a distance metric.  You can use the AED_threshold
> parameter
>>>>>>> to
>>>>>>>  require better matching to the evidence by setting it closer
> to
>>>>>>> 0.
>>>>>>> You
>>>>>>>  can
>>>>>>>  also try to increase protein homology evidence as some of
> your
>>>>>>> calls
>>>>>>> may
>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>  --Carson
>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>> wrote:
>>>>>>> Dear Maker community,
>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>  based
>>>>>>> prediction, I use this data-set to train SNAP as well as Augustus
> predictions, followed by boot-strapping. I would typically expect
> 20-30K
>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>  indicating
>>>>>>>  too
>>>>>>> many false positives. Is there a way to further refine these
>>>>>>> predication/script to retain predictions with AED score 1 and if yes
>>>>>>> how
>>>>>>> to go about this?
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
> -l
>>>>>>> ab
>>>>>>> .o
>>>>>>> rg
>>>>>>>  --
>>>>>>>  Scientific Programmer
>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>  Beckman Institute,
>>>>>>>  California Institute of Technology
>>>>>>>  http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>> or
>>>>>>> g
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>> or
>>>>>>> g
>>>>>>>  _______________________________________________
>>>>>>>  maker-devel mailing list
>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
> .o
>>>>>>> rg
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
> 
> 
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
> 
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
> 
> 
> 


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From carsonhh at gmail.com  Fri Dec  7 08:27:22 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 07 Dec 2012 10:27:22 -0500
Subject: [maker-devel] AED score
In-Reply-To: <4347.131.215.15.234.1354834302.squirrel@webmail.caltech.edu>
Message-ID: <CCE77471.16E05%carsonhh@gmail.com>

Don't use keep_preds on any of your steps.  That should really only be
used for Fungi, Oomycetes, or some insect species.  Other genomes with
long introns and short exons like tend to overcall so you will get way to
many false positives.  I gave a more detailed explanation of what I would
do in my other e-mail.

--Carson

On 12-12-06 5:51 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Daniel,
>
>Once again thanks for extensive help. We get over estimation of number of
>genes at the end of step 2. So was wondering if there is a way to pick
>only the best annotated. That been said assembly, ESTs and proteins are
>not good and I am currently in process of running cegma.
>
>Also for step 2(ab-initio gene-prediction using SNAP and Augustus) is it
>best to turn off  keep_preds to remove any possible false-positives. Also
>should est2genome turned ON? Of course as pointed in previous email use
>est,proteins apart from training data to generate better gene-model and
>repeat masking as well to mask repeats for ab-initio predictors?
>I believe while running gff3_merge it is best to use option -g to get only
>the gene-predictions and filter evidence.
>
>Thanks and regards,
>Parul Kudtarkar
>
>> Hi Parul,
>> I dont' really have many suggestions for improving the gene models after
>> the annotation is done. Annotation is very dependent on the data you
>>have
>> at hand (the assembly, ESTs and proteins). One thing you could do to get
>> more annotations is to run something like iprscan on the ab-initio
>> predictions that didn't overlap any evidence and look for predictions
>>that
>> contain a pfam domain. Then you can send those predictions back through
>> maker and promote them to gene model status.
>>
>> Do you have the CEGMA results that Carson asked about? That really will
>> tell you what kind of annotation results you can expect. If the assembly
>> doesn't have an N50 greater than the expected median gene size, then you
>> can't expect very good results from automated annotation.
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: Parul Kudtarkar [parulk at caltech.edu]
>> Sent: Thursday, December 06, 2012 1:28 PM
>> To: Daniel Ence
>> Cc: maker-devel at yandell-lab.org
>> Subject: Re: [maker-devel] AED score
>>
>> Dear Daniel,
>>
>> Thanks for clearing doubts. For augustus I am using the closest
>> species(lamprey) to species we are annotating. For SNAP the training
>> set(hmm file) is generated using predictions made from evidence based
>> gene-predictions(sorry the file name was mis-leading). I think STEP 3-6
>> are not required(more or less repetitive without further improving
>> genemodel). Post Step 1(generating training data for SNAP using evidence
>> based prediction) and Step2(ab-initio gene-prediction using SNAP and
>> augustus) do you have recommendations for further improving the gene
>> model?
>>
>> Thanks and regards,
>> Parul Kudtarkar
>>
>>> Hi Parul,
>>>
>>> In step one, if protein2genome isn't turned on, then the protein
>>> alignments wont be used to generate gene models. Carson said before to
>>> use
>>> protein2genome to generate gene models for your trainings set, but you
>>> should know that those data aren't being used right now.
>>>
>>> In step 2, you can include the est and protein evidence that you used
>>>in
>>> step one, and the ab-initio predictors will takes those data as hints
>>>to
>>> guide their predictions. Also, are you reannotating human here? I'm
>>>just
>>> wondering why the snap file is called Pult, but the augustus species
>>> model
>>> is human. Also, I think you should include the same masking files from
>>> step 1, otherwise the ab-initio predictors will be predicting on the
>>> unmasked sequence which will give you many spurious predictions.
>>>
>>> In step 3, I'm not certain what you mean by boot-strapping. The control
>>> file you sent for step 3 will just pass-through all of the data from
>>> before.
>>>
>>> In step 4, I think what you'll get is pretty close to what you already
>>> had
>>> in step 3. The gene models from step 3 are already based on the est and
>>> protein data from step 1, so without giving any different evidence or
>>> ab-initio predictors, I think that you will just get the same gene
>>> models
>>> that you got from step 3. Those gene models are what you should be
>>>using
>>> to train snap. Also, is this the same genome as in the other steps? The
>>> genome file here is called genome.linear.fa, but before it was called
>>> genome.fa.
>>>
>>> Step 5. So maker uses both evidence and ab-initio predictions to create
>>> models. If you don't give any evidence (EST or protein) maker will not
>>> annotate any gene models. You have also changed the augustus species
>>> model
>>> in this step, but I don't know what you've gained by going from one
>>> species to another. You should be training augustus with the gene
>>>models
>>> and then creating a new species model in augustus. As I understand it,
>>> the
>>> filter only operates on gene models, not ab-initio predictions or
>>> alignments, so it probably isn't doing anything the way you have it
>>>set.
>>>
>>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>>> mean by boot-strapping here too.
>>>
>>> Hopefully that clears up some of the confusion with how maker works.
>>> Carson will probably have a lot of suggestions too.
>>>
>>> Thanks,
>>> Daniel
>>>
>>> Daniel Ence
>>> Graduate Student
>>> Eccles Institute of Human Genetics
>>> University of Utah
>>> 15 North 2030 East, Room 2100
>>> Salt Lake City, UT 84112-5330
>>> ________________________________________
>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>> Sent: Thursday, December 06, 2012 10:08 AM
>>> To: carsonhh at gmail.com
>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>> Subject: Re: [maker-devel] AED score
>>>
>>> Hi Carson,
>>>
>>> Once again thanks for a quick response. We expect to get 25,000 to
>>> 30,000
>>> genes.
>>> Here are the step
>>> Step1. EST and proteins are used to predict gene-models. the resulting
>>> file is used as training data-set for SNAP in step2. est2genome is
>>> turned
>>> ON
>>> Step2. Augustus and SNAP is used to predict genes.
>>> Step3. The results are re-annoated(boot-strap)
>>> Step4. EST and proteins are used to predict gene-models. The gff file
>>> from
>>> step3. is used as model_gff. The resulting file is used as training
>>> data-set for SNAP in step2
>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>>> contig_size to 10kb
>>>
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>
>>> I have attached the configuration file for each step.
>>>> Your output has no genes.  They've all been filtered out.  The gene
>>> predictions are left for reference purposes, but there are no gene
>>> models
>>>> in the file.  You need to look at the type columns in the GFF3 file
>>>>-->
>>> match/match_part features are evidence and reference data but not
>>> models.
>>>> All models will have types gene/mRNA/exon/CDS.  For example if you
>>>>just
>>> want gene models in your file you can use the gff3_merge script with
>>>the
>>> -g option, and it will only print out the gene models.
>>>> I think you may be misinterpreting what is happening at different
>>>> steps,
>>> as well as how to read the result files.  Could you give me a detailed
>>> explanation of what you expect to get back together with your control
>>> files and I can walk you through the configuration, and indicate what
>>>to
>>> expect.  Also what was the report like from CEGMA. Could you include
>>>the
>>> report file that shows how complete your genome is and how fragmented
>>>it
>>> is?
>>>> Thanks,
>>>> Carson
>>>> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>Dear Carson,
>>>>>Thanks for a quick response. keep_preds is set to 0
>>>>>Though for previous step(ab-intio gene predictions keep_preds was set
>>>>> to
>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>> Scaffold1_out.gff.
>>>>>Please advice.
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>> You should always get all predictions, but should only get models
>>> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>> keep_preds set.
>>>>>> Do you have keeps_preds set or gene models with AED values above
>>>>>>your
>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>case,
>>>>>> just set it to 0.  If the second one in the case, could you send me
>>> example GFF3?
>>>>>> Thanks,
>>>>>> Carson
>>>>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>Dear Carson,
>>>>>>>Thanks once again, we have limited experimental data with very short
>>>>>>> ESTs.
>>>>>>>CEGMA is useful for us to gauge our gene-model.
>>>>>>>On a different note to re-annotate genome(post evidence based
>>>>>>>prediction(used as training dataset)and abinitio gene-prediction).
>>> Here
>>>>>>>are the control parameters I am using with AED score set to 0.5,
>>>>>>> however
>>>>>>> I
>>>>>>>get predictions that includes the ones with AED score of 1.00 in
>>>>>>> resulting
>>>>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>> initial
>>>>>>>gff3 file.
>>>>>>>#-----Genome (Required for De-Novo Annotation)
>>>>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>> eukaryotic
>>>>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>>file
>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0
>>>>>>> =
>>> no
>>>>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 =
>>>>>>>no
>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>> no
>>>>>>>#-----MAKER Behavior Options
>>>>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound
>>>>>>>by
>>> 0
>>>>>>>and 1)
>>>>>>>Thanks and regards,
>>>>>>>Parul Kudtarkar
>>>>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>>partial
>>>>>>>>at
>>>>>>>> best.  You should seriously consider using mRNAseq to capture
>>>>>>>>those
>>> by
>>>>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>>>>trinity.
>>>>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
>>> size,
>>>>>>>>just
>>>>>>>> have maker skip them by setting the min_contig filter in the
>>> maker_opts.ctl file.
>>>>>>>> Thanks,
>>>>>>>> Carson
>>>>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
>>> N50
>>>>>>>>> of
>>>>>>>>>39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>reason
>>>>>>>>> when
>>>>>>>>>filtering based on AED score 0.75 there are no gene models
>>>>>>>>> predicted
>>> despite the model_gff file has few genes with scores less than 0.75?
>>> Thanks and regards,
>>>>>>>>>Parul Kudtarkar
>>>>>>>>>> There are certain characteristics that are apparent in this
>>> contig.
>>>>>>>>>First
>>>>>>>>>> it seems to be repeat rich with a very low gene density.  You
>>>>>>>>>> also
>>>>>>>>>>have
>>>>>>>>>very short ESTs, and because of the lengths you are probably
>>>>>>>>> getting
>>> many
>>>>>>>>>> of them to align spuriously which produces very short gene
>>>>>>>>>>models
>>> that
>>>>>>>>>are
>>>>>>>>>> more than likely false positives or at the very least just a
>>>>>>>>>> piece
>>>>>>>>>>of
>>>>>>>>>>a
>>>>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>>> unless
>>>>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>> protein
>>>>>>>>>alignments also seem to be few and far between.  You probably need
>>> to
>>>>>>>>>add
>>>>>>>>>> more proteins from a couple of related species, and you might
>>> consider
>>>>>>>>>using protein2genome rather than est2genome as a predictor if you
>>> are
>>>>>>>>>still working to generate a training set. Also est2genome produced
>>> models
>>>>>>>>>> almost always have an AED score near 0 so mixing est2genome with
>>> the
>>>>>>>>>AED_threshold with such limited protein support does create an
>>> artificial
>>>>>>>>>> bias to get back very short and incomplete models.
>>>>>>>>>> How many contigs do you have in total and what is the N50 value
>>> for
>>>>>>>>>>the
>>>>>>>>>assembly? If you have a large number of very short contigs, you
>>>>>>>>> will
>>>>>>>>> get
>>>>>>>>>very inflated gene counts because you get genes split across
>>>>>>>>> contigs
>>>>>>>>> and
>>>>>>>>>many contigs tend t be subtle rearrangements of other contigs just
>>> assembled in a slightly different way (so you can get bits and
>>> pieces
>>>>>>>>> of
>>>>>>>>>the same genes just rearranged).  This scenario is another
>>>>>>>>> confounding
>>>>>>>>>factor if using the est2genome predictor with short ESTs.  I would
>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>> completeness
>>>>>>>>>as
>>>>>>>>>> well as get an estimate of fragmentation as one of the
>>>>>>>>>>statistics
>>>>>>>>>produced
>>>>>>>>>> is a percent of genes that are found complete (end to end) vs
>>> those
>>>>>>>>>> that
>>>>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
>>> shorter
>>>>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
>>> gives
>>>>>>>>>> a
>>>>>>>>>high partial percentage and a low complete percentage, then this
>>>>>>>>> pattern
>>>>>>>>>can be expected to be even more exaggerated for other genes in the
>>> genome.
>>>>>>>>>> If your genome is highly fragmented or proteins do not align
>>>>>>>>>>well
>>> then
>>>>>>>>>there are other strategies.  For example, some vertebrate genomes
>>> end
>>>>>>>>> up
>>>>>>>>>having extremely fragmented assemblies (on the order of 100,000
>>> contigs),
>>>>>>>>>> and if they are distantly related to other annotated species few
>>>>>>>>>proteins
>>>>>>>>>> may align to the contigs because the introns in the alignments
>>> tend
>>>>>>>>>> to
>>>>>>>>>be
>>>>>>>>>> so long and exons so short that it pushes down the significance
>>> scores
>>>>>>>>>too
>>>>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
>>> only
>>>>>>>>>> way
>>>>>>>>>to get enough evidence to stitch gene models together.
>>>>>>>>>> Thanks,
>>>>>>>>>> Carson
>>>>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>>>Dear Carson and Daniel,
>>>>>>>>>>>Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>score.
>>> The
>>>>>>>>>input gff3 file was provided to option model_pred(see attached
>>>>>>>>>file
>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>> least
>>>>>>>>>>> 5
>>>>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>>>>> predicted
>>>>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>>>>attached
>>>>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>>>just
>>>>>>>>>>>>want
>>>>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>>>>maker.
>>>>>>>>>>>>On
>>>>>>>>>>>> the other hand, if you are trying to build a dataset for
>>> training
>>>>>>>>>>>> gene
>>>>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>>>>> dataset
>>>>>>>>>>>>for
>>>>>>>>>>>> SNAP training.  There are a number of filters available. Just
>>> call
>>>>>>>>>>>> the
>>>>>>>>>script once without parameters to see the options.
>>>>>>>>>>>> Thanks,
>>>>>>>>>>>> Carson
>>>>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>Hi Parul,
>>>>>>>>>>>>>I think the way you described (with the maker_opts.ctl file)
>>>>>>>>>>>>>is
>>> how
>>>>>>>>>you
>>>>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>>>>Daniel
>>>>>>>>>>>>>Daniel Ence
>>>>>>>>>>>>>Graduate Student
>>>>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>>>>University of Utah
>>>>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>>>>________________________________________
>>>>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>>> Kudtarkar
>>>>>>>>>[parulk at caltech.edu]
>>>>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>>>>Also, are there any other parameters that are required when
>>> filtering
>>>>>>>>>based on AED score?
>>>>>>>>>>>>>> Hello Carson,
>>>>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
>>> models
>>>>>>>>>>>>>>at
>>>>>>>>>specific AED score.
>>>>>>>>>>>>>> Alternatively if I were to do this within maker with regards
>>> to
>>>>>>>>>>>>>>parameters
>>>>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>>>genes
>>>>>>>>>>>>>>gff3
>>>>>>>>>>>>>> file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>>> threshold?
>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best
>>>>>>>>>>>>>>>and
>>> 1
>>>>>>>>>>>>>>> is
>>>>>>>>>worst
>>>>>>>>>>>>>>> as
>>>>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
>>> parameter
>>>>>>>>>to
>>>>>>>>>>>>>>> require better matching to the evidence by setting it
>>>>>>>>>>>>>>>closer
>>> to
>>>>>>>>>>>>>>>0.
>>>>>>>>>>>>>>>You
>>>>>>>>>>>>>>> can
>>>>>>>>>>>>>>> also try to increase protein homology evidence as some of
>>> your
>>>>>>>>>calls
>>>>>>>>>>>>>>>may
>>>>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>>>>> --Carson
>>>>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>>>> based
>>>>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
>>> predictions, followed by boot-strapping. I would typically expect
>>> 20-30K
>>>>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>>>> indicating
>>>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>>>many false positives. Is there a way to further refine
>>>>>>>>>>>>>>>>these
>>>>>>>>>predication/script to retain predictions with AED score 1 and if
>>>>>>>>> yes
>>>>>>>>>>>>>>>>how
>>>>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>>>>--
>>>>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yan
>>>>>>>>>>>>>>>>dell
>>> -l
>>>>>>>>>>>>>>>>ab
>>>>>>>>>>>>>>>>.o
>>>>>>>>>rg
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>>--
>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandel
>>>>>>>>>>>>>l-la
>>> b.
>>>>>>>>>>>>>or
>>>>>>>>>>>>>g
>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandel
>>>>>>>>>>>>>l-la
>>> b.
>>>>>>>>>>>>>or
>>>>>>>>>>>>>g
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-lab
>>> .o
>>>>>>>>>>>>rg
>>>>>>>>>>>--
>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>>
>>>
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>>
>>
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>
>
>_______________________________________________
>maker-devel mailing list
>maker-devel at box290.bluehost.com
>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org





From carsonhh at gmail.com  Fri Dec  7 08:47:39 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 07 Dec 2012 10:47:39 -0500
Subject: [maker-devel] AED score
In-Reply-To: <CCE77415.16E00%carsonhh@gmail.com>
Message-ID: <CCE77941.16E3D%carsonhh@gmail.com>

For step 2 and 3, use lamprey rather than human in augustus.  For some
reason the current version of augustus doesn't diplay it as an option for
the species help menu (so I didn't see it), but it's there in
?/augustus/config/species/lamprey

For any additional training, make copies into
?/augustus/config/species/lamprey2 and ?/augustus/config/species/lamprey3

Thanks,
Carson



From:  Carson Holt <carsonhh at gmail.com>
Date:  Friday, 7 December, 2012 10:22 AM
To:  Daniel Ence <dence at genetics.utah.edu>, "maker-devel at yandell-lab.org"
<maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
Subject:  Re: [maker-devel] AED score

Just to add to Daniels comments.

Things to change in step 1:
> protein= <just try and add more protein evidence in general>
> est2genome=0
> protein2genome=1
> split_hit=20000
> min_contig=50000

Reasoning:
> Your ESTs are very short especially if this is a lamprey species which have
> very long introns and really short exons.  In lamprey (i.e. Petromyzon
> marinus), genes tend to be very long (remember gene lengths include introns
> and UTR and is not just the size of the coding sequence), so contigs shorter
> than 50kb are useless for training as you are unlikely to get nice complete
> gene models on those.  Also lampreys have very long introns, so you have to
> allow for bigger introns in alignments (split_hit parameter).  Finally add as
> much protein evidence from as many sources as possible.  Your maker training
> run will take a long time as proteins take forever to align, but because of
> the evolutionary distance of lamprey from everything else and the short exon
> structure of its genome, very little aligns directly to its genome from other
> deuterstome and vertebrate species.  I'm assuming this is a lamprey species
> because of what you said about the  augustus species file you are using.
> Really the only thing closely related to lampreys unfortunately are other
> lampreys.  Lancelets, hagfish, and sharks are not closely related to lamprey
> (while they branch closely together on the tree of life, there are too many
> years since the last common ancestor).  So while they may have similar issues
> related to annotation (long introns and short exons etc.) they will not really
> match that well for the gene predictor or even protein alignments.

Additional note:
> I have training files for the lamprey species Petromyzon marinus for both
> Augustus and SNAP that I could share with you in a few week, when the genome
> publication is is released.  But before that happens, new gene models will be
> available  through the UCSC browser (hopefully within a couple of weeks), and
> gene models are already available through ENSEMBL.  Get those protein files
> for training, it may be a big help for you.  If you want early access to the
> lamprey training files for Augustus and SNAP, you would have to request it
> from Weiming Li at Michigan State University (the head of that genome
> project).
> 


Things to change in step 2:
> Optimally you would be doing de novo training using mRNAseq results, but with
> on;ly sparse protein alignments and such a fragmented assembly, you are
> probably better off just trying to adapt the human HMM files.  They won't
> match that well, but you probably won't have the evidence for De Novo
> training.  First make a copy of the augustus human species directory and
> rename it to lamprey (cp -R  ?/augustus/config/species/human
> ?/augustus/config/species/lamprey).  Use it as the base species for retraining
> augustus using your new models.  You will have to edit multiple files in the
> directory after you copy it so that they no longer say human or homo sapiens
> internally or in the file name.  Use maker2zff to generate the filtered ZFF
> file for training SNAP, but don't train SNAP.  Rather use the training file to
> better train Augustus info here (just ignore the CEGMA part) -->
> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
> 
> MAKE a backup of the step 1 maker output directory and run step 2 in the old
> step 1 directory (this allows you to change the parameters and reuse files
> form step 1 so you don't have to recalculate all the protein and EST
> alignments).  So control files for step 2 are identical to step 1 except for
> these parameters.
> 
> protein2genome=0
> augustus_species=lamprey
> snaphmm=lamprey.hmm #optional if you decide to use SNAP
> 
> Don't both training SNAP here as you probably won't have enough data and you
> assembly is too fragmented for it to work well, so just stick to augustus.
> Try SNAP if you want just to see how well it works.  Manually open up the
> largest contigs in a viewer to look at the models produced from the MAKER run
> to see if they look reasonable (this will also help you decide whether to keep
> SNAP).
> 

Things to change in step 3:
> Step 3 should just be a clone of step 2 as it is bootstrapping.  But make
> copies of ?/augustus/config/species/lamprey and save it to
> ?/augustus/config/species/lamprey2 (editing all the files and names as you did
> in step 2). This way you don't loose that training data if you decide to step
> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
> 
> augustus_species=lamprey2
> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
> 
> Make a backup of Step 2 and run step 3 in the old Step 2 directory (This is
> for file reuse, so the step will run fast).  This must be the exact same step
> directory as step 2 for the reuse trick to work.
> 
> Manually review the models and if you are satisfied move to step 4.  Also note
> that most parameters including the protein, EST, and repeats should not change
> from step1-step3, and should not be removed for step 4 either, you can add
> more evidence, but don't remove evidence (like the repeats).
> 
> 
Things to change in step 4:
> For this step, just set min_contig=10000 and rerun MAKER inside the step 3
> directory to get the smaller contigs annotated.  This should be your final
> step, although you can try altering other parameters or adding more evidence
> sources here etc.
> 
> 
For other things to keep in mind, you should consider taking extra time to
build a comprehensive library of repeats for your species, I know that
Petromyzon marinus was virtually unannotatable until we had a very deep
repeat library built for it.  Any repeat library should be used in all
steps.  Also for lamprey, you will expect between 20,000-30,000 genes both
because of your assemblies fragmentation and because of some ancestral
genome duplication.  Also be aware that lampreys appear to undergo
programmed genome loss in somatic tissues, so any gene count you get is only
going to represent a maximum of 75-80% of all genes unless the assembly is
derived from germline tissue.

Thanks,
Carson


> 
On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:

> Hi Parul, 
> 
> In step one, if protein2genome isn't turned on, then the protein alignments
> wont be used to generate gene models. Carson said before to use protein2genome
> to generate gene models for your trainings set, but you should know that those
> data aren't being used right now.
> 
> In step 2, you can include the est and protein evidence that you used in step
> one, and the ab-initio predictors will takes those data as hints to guide
> their predictions. Also, are you reannotating human here? I'm just wondering
> why the snap file is called Pult, but the augustus species model is human.
> Also, I think you should include the same masking files from step 1, otherwise
> the ab-initio predictors will be predicting on the unmasked sequence which
> will give you many spurious predictions.
> 
> In step 3, I'm not certain what you mean by boot-strapping. The control file
> you sent for step 3 will just pass-through all of the data from before.
> 
> In step 4, I think what you'll get is pretty close to what you already had in
> step 3. The gene models from step 3 are already based on the est and protein
> data from step 1, so without giving any different evidence or ab-initio
> predictors, I think that you will just get the same gene models that you got
> from step 3. Those gene models are what you should be using to train snap.
> Also, is this the same genome as in the other steps? The genome file here is
> called genome.linear.fa, but before it was called genome.fa.
> 
> Step 5. So maker uses both evidence and ab-initio predictions to create
> models. If you don't give any evidence (EST or protein) maker will not
> annotate any gene models. You have also changed the augustus species model in
> this step, but I don't know what you've gained by going from one species to
> another. You should be training augustus with the gene models and then
> creating a new species model in augustus. As I understand it, the filter only
> operates on gene models, not ab-initio predictions or alignments, so it
> probably isn't doing anything the way you have it set.
> 
> Step 6. I think step 5 and 6 should be combined. I don't know what you mean by
> boot-strapping here too.
> 
> Hopefully that clears up some of the confusion with how maker works. Carson
> will probably have a lot of suggestions too.
> 
> Thanks,
> Daniel 
> 
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 10:08 AM
> To: carsonhh at gmail.com
> Cc: Daniel Ence; maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
> 
> Hi Carson,
> 
> Once again thanks for a quick response. We expect to get 25,000 to 30,000
> genes.
> Here are the step
> Step1. EST and proteins are used to predict gene-models. the resulting
> file is used as training data-set for SNAP in step2. est2genome is turned
> ON
> Step2. Augustus and SNAP is used to predict genes.
> Step3. The results are re-annoated(boot-strap)
> Step4. EST and proteins are used to predict gene-models. The gff file from
> step3. is used as model_gff. The resulting file is used as training
> data-set for SNAP in step2
> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
> contig_size to 10kb
> 
> Thanks and regards,
> Parul Kudtarkar
> 
> I have attached the configuration file for each step.
>>  Your output has no genes.  They've all been filtered out.  The gene
> predictions are left for reference purposes, but there are no gene models
>>  in the file.  You need to look at the type columns in the GFF3 file -->
> match/match_part features are evidence and reference data but not
> models.
>>  All models will have types gene/mRNA/exon/CDS.  For example if you just
> want gene models in your file you can use the gff3_merge script with the
> -g option, and it will only print out the gene models.
>>  I think you may be misinterpreting what is happening at different steps,
> as well as how to read the result files.  Could you give me a detailed
> explanation of what you expect to get back together with your control
> files and I can walk you through the configuration, and indicate what to
> expect.  Also what was the report like from CEGMA. Could you include the
> report file that shows how complete your genome is and how fragmented it
> is?
>>  Thanks,
>>  Carson
>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>> Dear Carson,
>>> Thanks for a quick response. keep_preds is set to 0
>>> Though for previous step(ab-intio gene predictions keep_preds was set to
> 1, see Scaffold1_input.gff). I have also attached the output file
> Scaffold1_out.gff.
>>> Please advice.
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>>  You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>>>>  Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the
>>>> case,
>>>>  just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>>>>  Thanks,
>>>>  Carson
>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>> Dear Carson,
>>>>> Thanks once again, we have limited experimental data with very short
>>>>>  ESTs.
>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>> On a different note to re-annotate genome(post evidence based
>>>>> prediction(used as training dataset)and abinitio gene-prediction).
> Here
>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>  however
>>>>>  I
>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>  resulting
>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>  initial
>>>>> gff3 file.
>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>  eukaryotic
>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
> no
>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>  no
>>>>> #-----MAKER Behavior Options
>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
> 0
>>>>> and 1)
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>> partial
>>>>>> at
>>>>>>  best.  You should seriously consider using mRNAseq to capture those
> by
>>>>>>  using maker's est_gff option to pass in results from cufflinks or
>>>>>> trinity.
>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
> size,
>>>>>> just
>>>>>>  have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>>>>>>  Thanks,
>>>>>>  Carson
>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Thanks for the guidance Carson, total contig size is 330,611 with
> N50
>>>>>>>  of
>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>>  when
>>>>>>> filtering based on AED score 0.75 there are no gene models predicted
> despite the model_gff file has few genes with scores less than 0.75?
> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>  There are certain characteristics that are apparent in this
> contig.
>>>>>>> First
>>>>>>>  it seems to be repeat rich with a very low gene density.  You also
>>>>>>> have
>>>>>>> very short ESTs, and because of the lengths you are probably getting
> many
>>>>>>>  of them to align spuriously which produces very short gene models
> that
>>>>>>> are
>>>>>>>  more than likely false positives or at the very least just a piece
>>>>>>> of
>>>>>>> a
>>>>>>> gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>  unless
>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>  protein
>>>>>>> alignments also seem to be few and far between.  You probably need
> to
>>>>>>> add
>>>>>>>  more proteins from a couple of related species, and you might
> consider
>>>>>>> using protein2genome rather than est2genome as a predictor if you
> are
>>>>>>> still working to generate a training set. Also est2genome produced
> models
>>>>>>>  almost always have an AED score near 0 so mixing est2genome with
> the
>>>>>>> AED_threshold with such limited protein support does create an
> artificial
>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>  How many contigs do you have in total and what is the N50 value
> for
>>>>>>> the
>>>>>>> assembly? If you have a large number of very short contigs, you will
>>>>>>>  get
>>>>>>> very inflated gene counts because you get genes split across contigs
>>>>>>>  and
>>>>>>> many contigs tend t be subtle rearrangements of other contigs just
> assembled in a slightly different way (so you can get bits and
> pieces
>>>>>>>  of
>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>  confounding
>>>>>>> factor if using the est2genome predictor with short ESTs.  I would
> recommend running CEGMA to get an estimate for the genome
>>>>>>>  completeness
>>>>>>> as
>>>>>>>  well as get an estimate of fragmentation as one of the statistics
>>>>>>> produced
>>>>>>>  is a percent of genes that are found complete (end to end) vs
> those
>>>>>>>  that
>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to be
> shorter
>>>>>>>  and less intron rich than other genes in the genome, so if CEGMA
> gives
>>>>>>>  a
>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>  pattern
>>>>>>> can be expected to be even more exaggerated for other genes in the
> genome.
>>>>>>>  If your genome is highly fragmented or proteins do not align well
> then
>>>>>>> there are other strategies.  For example, some vertebrate genomes
> end
>>>>>>>  up
>>>>>>> having extremely fragmented assemblies (on the order of 100,000
> contigs),
>>>>>>>  and if they are distantly related to other annotated species few
>>>>>>> proteins
>>>>>>>  may align to the contigs because the introns in the alignments
> tend
>>>>>>>  to
>>>>>>> be
>>>>>>>  so long and exons so short that it pushes down the significance
> scores
>>>>>>> too
>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
> only
>>>>>>>  way
>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Dear Carson and Daniel,
>>>>>>> Thanks. I ran sample file for filtering genes based on AED score.
> The
>>>>>>> input gff3 file was provided to option model_pred(see attached file
> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>  least
>>>>>>>  5
>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>  predicted
>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>> attached
>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>> just
>>>>>>> want
>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>> maker.
>>>>>>> On
>>>>>>>  the other hand, if you are trying to build a dataset for
> training
>>>>>>>  gene
>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>  dataset
>>>>>>> for
>>>>>>>  SNAP training.  There are a number of filters available. Just
> call
>>>>>>>  the
>>>>>>> script once without parameters to see the options.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>> wrote:
>>>>>>> Hi Parul,
>>>>>>> I think the way you described (with the maker_opts.ctl file) is
> how
>>>>>>> you
>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>> Daniel
>>>>>>> Daniel Ence
>>>>>>> Graduate Student
>>>>>>> Eccles Institute of Human Genetics
>>>>>>> University of Utah
>>>>>>> 15 North 2030 East, Room 2100
>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>> ________________________________________
>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>  Kudtarkar
>>>>>>> [parulk at caltech.edu]
>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>> To: Parul Kudtarkar
>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>> Also, are there any other parameters that are required when
> filtering
>>>>>>> based on AED score?
>>>>>>>  Hello Carson,
>>>>>>>  Just to confirm, Is there a script that would filter gene
> models
>>>>>>> at
>>>>>>> specific AED score.
>>>>>>>  Alternatively if I were to do this within maker with regards
> to
>>>>>>> parameters
>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>> genes
>>>>>>> gff3
>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>> Thanks and regards,
>>>>>>>  Parul Kudtarkar
>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
> 1
>>>>>>>  is
>>>>>>> worst
>>>>>>>  as
>>>>>>>  it is a distance metric.  You can use the AED_threshold
> parameter
>>>>>>> to
>>>>>>>  require better matching to the evidence by setting it closer
> to
>>>>>>> 0.
>>>>>>> You
>>>>>>>  can
>>>>>>>  also try to increase protein homology evidence as some of
> your
>>>>>>> calls
>>>>>>> may
>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>  --Carson
>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>> wrote:
>>>>>>> Dear Maker community,
>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>  based
>>>>>>> prediction, I use this data-set to train SNAP as well as Augustus
> predictions, followed by boot-strapping. I would typically expect
> 20-30K
>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>  indicating
>>>>>>>  too
>>>>>>> many false positives. Is there a way to further refine these
>>>>>>> predication/script to retain predictions with AED score 1 and if yes
>>>>>>> how
>>>>>>> to go about this?
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
> -l
>>>>>>> ab
>>>>>>> .o
>>>>>>> rg
>>>>>>>  --
>>>>>>>  Scientific Programmer
>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>  Beckman Institute,
>>>>>>>  California Institute of Technology
>>>>>>>  http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>> or
>>>>>>> g
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>> or
>>>>>>> g
>>>>>>>  _______________________________________________
>>>>>>>  maker-devel mailing list
>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
> .o
>>>>>>> rg
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
> 
> 
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
> 
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
> 
> 
> 


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From parulk at caltech.edu  Fri Dec  7 15:06:26 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Fri, 7 Dec 2012 14:06:26 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCE77941.16E3D%carsonhh@gmail.com>
References: <CCE77941.16E3D%carsonhh@gmail.com>
Message-ID: <2974.131.215.15.234.1354917986.squirrel@webmail.caltech.edu>

Dear Carson,

Thanks for detailed explanation and help. Now we know the exact parameters
that should help us with generating good gene-model.

The genome for which we are working on gene predictions is
Echinoderm(sea-urchin). lamprey was the closest organism for training
augustus that I could find. A quick question for training augustus, there
is augustus_species option how would you go from training data generated
by zff2augustus_gbk.pl > train.gb as specified here
http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
generating the species folder that can be specified to augustus_species
option.

The average expected gene-length in our case is ~15kb.
We also have a good repeat library for our genome.

Thanks and regards,
Parul Kudtarkar

> For step 2 and 3, use lamprey rather than human in augustus.  For some
> reason the current version of augustus doesn't diplay it as an option for
> the species help menu (so I didn't see it), but it's there in
> ?/augustus/config/species/lamprey
>
> For any additional training, make copies into
> ?/augustus/config/species/lamprey2 and ?/augustus/config/species/lamprey3
>
> Thanks,
> Carson
>
>
>
> From:  Carson Holt <carsonhh at gmail.com>
> Date:  Friday, 7 December, 2012 10:22 AM
> To:  Daniel Ence <dence at genetics.utah.edu>, "maker-devel at yandell-lab.org"
> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
> Subject:  Re: [maker-devel] AED score
>
> Just to add to Daniels comments.
>
> Things to change in step 1:
>> protein= <just try and add more protein evidence in general>
>> est2genome=0
>> protein2genome=1
>> split_hit=20000
>> min_contig=50000
>
> Reasoning:
>> Your ESTs are very short especially if this is a lamprey species which
>> have
>> very long introns and really short exons.  In lamprey (i.e. Petromyzon
>> marinus), genes tend to be very long (remember gene lengths include
>> introns
>> and UTR and is not just the size of the coding sequence), so contigs
>> shorter
>> than 50kb are useless for training as you are unlikely to get nice
>> complete
>> gene models on those.  Also lampreys have very long introns, so you have
>> to
>> allow for bigger introns in alignments (split_hit parameter).  Finally
>> add as
>> much protein evidence from as many sources as possible.  Your maker
>> training
>> run will take a long time as proteins take forever to align, but because
>> of
>> the evolutionary distance of lamprey from everything else and the short
>> exon
>> structure of its genome, very little aligns directly to its genome from
>> other
>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>> species
>> because of what you said about the  augustus species file you are using.
>> Really the only thing closely related to lampreys unfortunately are
>> other
>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>> lamprey
>> (while they branch closely together on the tree of life, there are too
>> many
>> years since the last common ancestor).  So while they may have similar
>> issues
>> related to annotation (long introns and short exons etc.) they will not
>> really
>> match that well for the gene predictor or even protein alignments.
>
> Additional note:
>> I have training files for the lamprey species Petromyzon marinus for
>> both
>> Augustus and SNAP that I could share with you in a few week, when the
>> genome
>> publication is is released.  But before that happens, new gene models
>> will be
>> available  through the UCSC browser (hopefully within a couple of
>> weeks), and
>> gene models are already available through ENSEMBL.  Get those protein
>> files
>> for training, it may be a big help for you.  If you want early access to
>> the
>> lamprey training files for Augustus and SNAP, you would have to request
>> it
>> from Weiming Li at Michigan State University (the head of that genome
>> project).
>>
>
>
> Things to change in step 2:
>> Optimally you would be doing de novo training using mRNAseq results, but
>> with
>> on;ly sparse protein alignments and such a fragmented assembly, you are
>> probably better off just trying to adapt the human HMM files.  They
>> won't
>> match that well, but you probably won't have the evidence for De Novo
>> training.  First make a copy of the augustus human species directory and
>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>> ?/augustus/config/species/lamprey).  Use it as the base species for
>> retraining
>> augustus using your new models.  You will have to edit multiple files in
>> the
>> directory after you copy it so that they no longer say human or homo
>> sapiens
>> internally or in the file name.  Use maker2zff to generate the filtered
>> ZFF
>> file for training SNAP, but don't train SNAP.  Rather use the training
>> file to
>> better train Augustus info here (just ignore the CEGMA part) -->
>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>
>> MAKE a backup of the step 1 maker output directory and run step 2 in the
>> old
>> step 1 directory (this allows you to change the parameters and reuse
>> files
>> form step 1 so you don't have to recalculate all the protein and EST
>> alignments).  So control files for step 2 are identical to step 1 except
>> for
>> these parameters.
>>
>> protein2genome=0
>> augustus_species=lamprey
>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>
>> Don't both training SNAP here as you probably won't have enough data and
>> you
>> assembly is too fragmented for it to work well, so just stick to
>> augustus.
>> Try SNAP if you want just to see how well it works.  Manually open up
>> the
>> largest contigs in a viewer to look at the models produced from the
>> MAKER run
>> to see if they look reasonable (this will also help you decide whether
>> to keep
>> SNAP).
>>
>
> Things to change in step 3:
>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>> make
>> copies of ?/augustus/config/species/lamprey and save it to
>> ?/augustus/config/species/lamprey2 (editing all the files and names as
>> you did
>> in step 2). This way you don't loose that training data if you decide to
>> step
>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>
>> augustus_species=lamprey2
>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>
>> Make a backup of Step 2 and run step 3 in the old Step 2 directory (This
>> is
>> for file reuse, so the step will run fast).  This must be the exact same
>> step
>> directory as step 2 for the reuse trick to work.
>>
>> Manually review the models and if you are satisfied move to step 4.
>> Also note
>> that most parameters including the protein, EST, and repeats should not
>> change
>> from step1-step3, and should not be removed for step 4 either, you can
>> add
>> more evidence, but don't remove evidence (like the repeats).
>>
>>
> Things to change in step 4:
>> For this step, just set min_contig=10000 and rerun MAKER inside the step
>> 3
>> directory to get the smaller contigs annotated.  This should be your
>> final
>> step, although you can try altering other parameters or adding more
>> evidence
>> sources here etc.
>>
>>
> For other things to keep in mind, you should consider taking extra time to
> build a comprehensive library of repeats for your species, I know that
> Petromyzon marinus was virtually unannotatable until we had a very deep
> repeat library built for it.  Any repeat library should be used in all
> steps.  Also for lamprey, you will expect between 20,000-30,000 genes both
> because of your assemblies fragmentation and because of some ancestral
> genome duplication.  Also be aware that lampreys appear to undergo
> programmed genome loss in somatic tissues, so any gene count you get is
> only
> going to represent a maximum of 75-80% of all genes unless the assembly is
> derived from germline tissue.
>
> Thanks,
> Carson
>
>
>>
> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>
>> Hi Parul,
>>
>> In step one, if protein2genome isn't turned on, then the protein
>> alignments
>> wont be used to generate gene models. Carson said before to use
>> protein2genome
>> to generate gene models for your trainings set, but you should know that
>> those
>> data aren't being used right now.
>>
>> In step 2, you can include the est and protein evidence that you used in
>> step
>> one, and the ab-initio predictors will takes those data as hints to
>> guide
>> their predictions. Also, are you reannotating human here? I'm just
>> wondering
>> why the snap file is called Pult, but the augustus species model is
>> human.
>> Also, I think you should include the same masking files from step 1,
>> otherwise
>> the ab-initio predictors will be predicting on the unmasked sequence
>> which
>> will give you many spurious predictions.
>>
>> In step 3, I'm not certain what you mean by boot-strapping. The control
>> file
>> you sent for step 3 will just pass-through all of the data from before.
>>
>> In step 4, I think what you'll get is pretty close to what you already
>> had in
>> step 3. The gene models from step 3 are already based on the est and
>> protein
>> data from step 1, so without giving any different evidence or ab-initio
>> predictors, I think that you will just get the same gene models that you
>> got
>> from step 3. Those gene models are what you should be using to train
>> snap.
>> Also, is this the same genome as in the other steps? The genome file
>> here is
>> called genome.linear.fa, but before it was called genome.fa.
>>
>> Step 5. So maker uses both evidence and ab-initio predictions to create
>> models. If you don't give any evidence (EST or protein) maker will not
>> annotate any gene models. You have also changed the augustus species
>> model in
>> this step, but I don't know what you've gained by going from one species
>> to
>> another. You should be training augustus with the gene models and then
>> creating a new species model in augustus. As I understand it, the filter
>> only
>> operates on gene models, not ab-initio predictions or alignments, so it
>> probably isn't doing anything the way you have it set.
>>
>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>> mean by
>> boot-strapping here too.
>>
>> Hopefully that clears up some of the confusion with how maker works.
>> Carson
>> will probably have a lot of suggestions too.
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: Parul Kudtarkar [parulk at caltech.edu]
>> Sent: Thursday, December 06, 2012 10:08 AM
>> To: carsonhh at gmail.com
>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>> Subject: Re: [maker-devel] AED score
>>
>> Hi Carson,
>>
>> Once again thanks for a quick response. We expect to get 25,000 to
>> 30,000
>> genes.
>> Here are the step
>> Step1. EST and proteins are used to predict gene-models. the resulting
>> file is used as training data-set for SNAP in step2. est2genome is
>> turned
>> ON
>> Step2. Augustus and SNAP is used to predict genes.
>> Step3. The results are re-annoated(boot-strap)
>> Step4. EST and proteins are used to predict gene-models. The gff file
>> from
>> step3. is used as model_gff. The resulting file is used as training
>> data-set for SNAP in step2
>> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>> contig_size to 10kb
>>
>> Thanks and regards,
>> Parul Kudtarkar
>>
>> I have attached the configuration file for each step.
>>>  Your output has no genes.  They've all been filtered out.  The gene
>> predictions are left for reference purposes, but there are no gene
>> models
>>>  in the file.  You need to look at the type columns in the GFF3 file
>>> -->
>> match/match_part features are evidence and reference data but not
>> models.
>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>> just
>> want gene models in your file you can use the gff3_merge script with the
>> -g option, and it will only print out the gene models.
>>>  I think you may be misinterpreting what is happening at different
>>> steps,
>> as well as how to read the result files.  Could you give me a detailed
>> explanation of what you expect to get back together with your control
>> files and I can walk you through the configuration, and indicate what to
>> expect.  Also what was the report like from CEGMA. Could you include the
>> report file that shows how complete your genome is and how fragmented it
>> is?
>>>  Thanks,
>>>  Carson
>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>> Dear Carson,
>>>> Thanks for a quick response. keep_preds is set to 0
>>>> Though for previous step(ab-intio gene predictions keep_preds was set
>>>> to
>> 1, see Scaffold1_input.gff). I have also attached the output file
>> Scaffold1_out.gff.
>>>> Please advice.
>>>> Thanks and regards,
>>>> Parul Kudtarkar
>>>>>  You should always get all predictions, but should only get models
>> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>> keep_preds set.
>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>> your
>> threshold (not match/match_part features)?  If the first one is the
>>>>> case,
>>>>>  just set it to 0.  If the second one in the case, could you send me
>> example GFF3?
>>>>>  Thanks,
>>>>>  Carson
>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>> Dear Carson,
>>>>>> Thanks once again, we have limited experimental data with very short
>>>>>>  ESTs.
>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>> prediction(used as training dataset)and abinitio gene-prediction).
>> Here
>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>  however
>>>>>>  I
>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>  resulting
>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>  initial
>>>>>> gff3 file.
>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>  eukaryotic
>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>> file
>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0
>>>>>> =
>> no
>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 =
>>>>>> no
>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>  no
>>>>>> #-----MAKER Behavior Options
>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound
>>>>>> by
>> 0
>>>>>> and 1)
>>>>>> Thanks and regards,
>>>>>> Parul Kudtarkar
>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>> partial
>>>>>>> at
>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>> those
>> by
>>>>>>>  using maker's est_gff option to pass in results from cufflinks or
>>>>>>> trinity.
>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
>> size,
>>>>>>> just
>>>>>>>  have maker skip them by setting the min_contig filter in the
>> maker_opts.ctl file.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611 with
>> N50
>>>>>>>>  of
>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>> reason
>>>>>>>>  when
>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>> predicted
>> despite the model_gff file has few genes with scores less than 0.75?
>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>  There are certain characteristics that are apparent in this
>> contig.
>>>>>>>> First
>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>> also
>>>>>>>> have
>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>> getting
>> many
>>>>>>>>  of them to align spuriously which produces very short gene models
>> that
>>>>>>>> are
>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>> piece
>>>>>>>> of
>>>>>>>> a
>>>>>>>> gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>>  unless
>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>  protein
>>>>>>>> alignments also seem to be few and far between.  You probably need
>> to
>>>>>>>> add
>>>>>>>>  more proteins from a couple of related species, and you might
>> consider
>>>>>>>> using protein2genome rather than est2genome as a predictor if you
>> are
>>>>>>>> still working to generate a training set. Also est2genome produced
>> models
>>>>>>>>  almost always have an AED score near 0 so mixing est2genome with
>> the
>>>>>>>> AED_threshold with such limited protein support does create an
>> artificial
>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>  How many contigs do you have in total and what is the N50 value
>> for
>>>>>>>> the
>>>>>>>> assembly? If you have a large number of very short contigs, you
>>>>>>>> will
>>>>>>>>  get
>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>> contigs
>>>>>>>>  and
>>>>>>>> many contigs tend t be subtle rearrangements of other contigs just
>> assembled in a slightly different way (so you can get bits and
>> pieces
>>>>>>>>  of
>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>  confounding
>>>>>>>> factor if using the est2genome predictor with short ESTs.  I would
>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>  completeness
>>>>>>>> as
>>>>>>>>  well as get an estimate of fragmentation as one of the statistics
>>>>>>>> produced
>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>> those
>>>>>>>>  that
>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to be
>> shorter
>>>>>>>>  and less intron rich than other genes in the genome, so if CEGMA
>> gives
>>>>>>>>  a
>>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>>  pattern
>>>>>>>> can be expected to be even more exaggerated for other genes in the
>> genome.
>>>>>>>>  If your genome is highly fragmented or proteins do not align well
>> then
>>>>>>>> there are other strategies.  For example, some vertebrate genomes
>> end
>>>>>>>>  up
>>>>>>>> having extremely fragmented assemblies (on the order of 100,000
>> contigs),
>>>>>>>>  and if they are distantly related to other annotated species few
>>>>>>>> proteins
>>>>>>>>  may align to the contigs because the introns in the alignments
>> tend
>>>>>>>>  to
>>>>>>>> be
>>>>>>>>  so long and exons so short that it pushes down the significance
>> scores
>>>>>>>> too
>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
>> only
>>>>>>>>  way
>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>> Dear Carson and Daniel,
>>>>>>>> Thanks. I ran sample file for filtering genes based on AED score.
>> The
>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>> file
>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>  least
>>>>>>>>  5
>>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>>  predicted
>>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>>> attached
>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>> just
>>>>>>>> want
>>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>>> maker.
>>>>>>>> On
>>>>>>>>  the other hand, if you are trying to build a dataset for
>> training
>>>>>>>>  gene
>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>  dataset
>>>>>>>> for
>>>>>>>>  SNAP training.  There are a number of filters available. Just
>> call
>>>>>>>>  the
>>>>>>>> script once without parameters to see the options.
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>> wrote:
>>>>>>>> Hi Parul,
>>>>>>>> I think the way you described (with the maker_opts.ctl file) is
>> how
>>>>>>>> you
>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>> Daniel
>>>>>>>> Daniel Ence
>>>>>>>> Graduate Student
>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>> University of Utah
>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>> ________________________________________
>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>  Kudtarkar
>>>>>>>> [parulk at caltech.edu]
>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>> To: Parul Kudtarkar
>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>> Also, are there any other parameters that are required when
>> filtering
>>>>>>>> based on AED score?
>>>>>>>>  Hello Carson,
>>>>>>>>  Just to confirm, Is there a script that would filter gene
>> models
>>>>>>>> at
>>>>>>>> specific AED score.
>>>>>>>>  Alternatively if I were to do this within maker with regards
>> to
>>>>>>>> parameters
>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>> genes
>>>>>>>> gff3
>>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>> Thanks and regards,
>>>>>>>>  Parul Kudtarkar
>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>> 1
>>>>>>>>  is
>>>>>>>> worst
>>>>>>>>  as
>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>> parameter
>>>>>>>> to
>>>>>>>>  require better matching to the evidence by setting it closer
>> to
>>>>>>>> 0.
>>>>>>>> You
>>>>>>>>  can
>>>>>>>>  also try to increase protein homology evidence as some of
>> your
>>>>>>>> calls
>>>>>>>> may
>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>  --Carson
>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>> Dear Maker community,
>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>  based
>>>>>>>> prediction, I use this data-set to train SNAP as well as Augustus
>> predictions, followed by boot-strapping. I would typically expect
>> 20-30K
>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>  indicating
>>>>>>>>  too
>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>> predication/script to retain predictions with AED score 1 and if
>>>>>>>> yes
>>>>>>>> how
>>>>>>>> to go about this?
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>> _______________________________________________
>>>>>>>> maker-devel mailing list
>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>> -l
>>>>>>>> ab
>>>>>>>> .o
>>>>>>>> rg
>>>>>>>>  --
>>>>>>>>  Scientific Programmer
>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>  Beckman Institute,
>>>>>>>>  California Institute of Technology
>>>>>>>>  http://www.spbase.org
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>> _______________________________________________
>>>>>>>> maker-devel mailing list
>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>> b.
>>>>>>>> or
>>>>>>>> g
>>>>>>>> _______________________________________________
>>>>>>>> maker-devel mailing list
>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>> b.
>>>>>>>> or
>>>>>>>> g
>>>>>>>>  _______________________________________________
>>>>>>>>  maker-devel mailing list
>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>> .o
>>>>>>>> rg
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>> --
>>>> Scientific Programmer
>>>> Center for Computational Regulatory Genomics
>>>> Beckman Institute,
>>>> California Institute of Technology
>>>> http://www.spbase.org
>>
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>>
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From parulk at caltech.edu  Fri Dec  7 18:09:53 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Fri, 7 Dec 2012 17:09:53 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <2974.131.215.15.234.1354917989.squirrel@webmail.caltech.edu>
References: <CCE77941.16E3D%carsonhh@gmail.com>
	<2974.131.215.15.234.1354917989.squirrel@webmail.caltech.edu>
Message-ID: <2516.131.215.15.234.1354928993.squirrel@webmail.caltech.edu>

Sorry for not checking this before, just to answer my own question I just
found after reading augustus documentation that autoAugTrain.pl should
work for generating training dataset for Augustus from using the
gene-model hints from first pass run of maker and using
http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script to
generate training.gb

autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb

I believe should work better than using lamprey to train augustus.

Thanks and regards,
Parul Kudtarkar

> Dear Carson,
>
> Thanks for detailed explanation and help. Now we know the exact parameters
> that should help us with generating good gene-model.
>
> The genome for which we are working on gene predictions is
> Echinoderm(sea-urchin). lamprey was the closest organism for training
> augustus that I could find. A quick question for training augustus, there
> is augustus_species option how would you go from training data generated
> by zff2augustus_gbk.pl > train.gb as specified here
> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
> generating the species folder that can be specified to augustus_species
> option.
>
> The average expected gene-length in our case is ~15kb.
> We also have a good repeat library for our genome.
>
> Thanks and regards,
> Parul Kudtarkar
>
>> For step 2 and 3, use lamprey rather than human in augustus.  For some
>> reason the current version of augustus doesn't diplay it as an option
>> for
>> the species help menu (so I didn't see it), but it's there in
>> ?/augustus/config/species/lamprey
>>
>> For any additional training, make copies into
>> ?/augustus/config/species/lamprey2 and
>> ?/augustus/config/species/lamprey3
>>
>> Thanks,
>> Carson
>>
>>
>>
>> From:  Carson Holt <carsonhh at gmail.com>
>> Date:  Friday, 7 December, 2012 10:22 AM
>> To:  Daniel Ence <dence at genetics.utah.edu>,
>> "maker-devel at yandell-lab.org"
>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>> Subject:  Re: [maker-devel] AED score
>>
>> Just to add to Daniels comments.
>>
>> Things to change in step 1:
>>> protein= <just try and add more protein evidence in general>
>>> est2genome=0
>>> protein2genome=1
>>> split_hit=20000
>>> min_contig=50000
>>
>> Reasoning:
>>> Your ESTs are very short especially if this is a lamprey species which
>>> have
>>> very long introns and really short exons.  In lamprey (i.e. Petromyzon
>>> marinus), genes tend to be very long (remember gene lengths include
>>> introns
>>> and UTR and is not just the size of the coding sequence), so contigs
>>> shorter
>>> than 50kb are useless for training as you are unlikely to get nice
>>> complete
>>> gene models on those.  Also lampreys have very long introns, so you
>>> have
>>> to
>>> allow for bigger introns in alignments (split_hit parameter).  Finally
>>> add as
>>> much protein evidence from as many sources as possible.  Your maker
>>> training
>>> run will take a long time as proteins take forever to align, but
>>> because
>>> of
>>> the evolutionary distance of lamprey from everything else and the short
>>> exon
>>> structure of its genome, very little aligns directly to its genome from
>>> other
>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>> species
>>> because of what you said about the  augustus species file you are
>>> using.
>>> Really the only thing closely related to lampreys unfortunately are
>>> other
>>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>>> lamprey
>>> (while they branch closely together on the tree of life, there are too
>>> many
>>> years since the last common ancestor).  So while they may have similar
>>> issues
>>> related to annotation (long introns and short exons etc.) they will not
>>> really
>>> match that well for the gene predictor or even protein alignments.
>>
>> Additional note:
>>> I have training files for the lamprey species Petromyzon marinus for
>>> both
>>> Augustus and SNAP that I could share with you in a few week, when the
>>> genome
>>> publication is is released.  But before that happens, new gene models
>>> will be
>>> available  through the UCSC browser (hopefully within a couple of
>>> weeks), and
>>> gene models are already available through ENSEMBL.  Get those protein
>>> files
>>> for training, it may be a big help for you.  If you want early access
>>> to
>>> the
>>> lamprey training files for Augustus and SNAP, you would have to request
>>> it
>>> from Weiming Li at Michigan State University (the head of that genome
>>> project).
>>>
>>
>>
>> Things to change in step 2:
>>> Optimally you would be doing de novo training using mRNAseq results,
>>> but
>>> with
>>> on;ly sparse protein alignments and such a fragmented assembly, you are
>>> probably better off just trying to adapt the human HMM files.  They
>>> won't
>>> match that well, but you probably won't have the evidence for De Novo
>>> training.  First make a copy of the augustus human species directory
>>> and
>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>> retraining
>>> augustus using your new models.  You will have to edit multiple files
>>> in
>>> the
>>> directory after you copy it so that they no longer say human or homo
>>> sapiens
>>> internally or in the file name.  Use maker2zff to generate the filtered
>>> ZFF
>>> file for training SNAP, but don't train SNAP.  Rather use the training
>>> file to
>>> better train Augustus info here (just ignore the CEGMA part) -->
>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>
>>> MAKE a backup of the step 1 maker output directory and run step 2 in
>>> the
>>> old
>>> step 1 directory (this allows you to change the parameters and reuse
>>> files
>>> form step 1 so you don't have to recalculate all the protein and EST
>>> alignments).  So control files for step 2 are identical to step 1
>>> except
>>> for
>>> these parameters.
>>>
>>> protein2genome=0
>>> augustus_species=lamprey
>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>
>>> Don't both training SNAP here as you probably won't have enough data
>>> and
>>> you
>>> assembly is too fragmented for it to work well, so just stick to
>>> augustus.
>>> Try SNAP if you want just to see how well it works.  Manually open up
>>> the
>>> largest contigs in a viewer to look at the models produced from the
>>> MAKER run
>>> to see if they look reasonable (this will also help you decide whether
>>> to keep
>>> SNAP).
>>>
>>
>> Things to change in step 3:
>>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>>> make
>>> copies of ?/augustus/config/species/lamprey and save it to
>>> ?/augustus/config/species/lamprey2 (editing all the files and names as
>>> you did
>>> in step 2). This way you don't loose that training data if you decide
>>> to
>>> step
>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>
>>> augustus_species=lamprey2
>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>
>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>> (This
>>> is
>>> for file reuse, so the step will run fast).  This must be the exact
>>> same
>>> step
>>> directory as step 2 for the reuse trick to work.
>>>
>>> Manually review the models and if you are satisfied move to step 4.
>>> Also note
>>> that most parameters including the protein, EST, and repeats should not
>>> change
>>> from step1-step3, and should not be removed for step 4 either, you can
>>> add
>>> more evidence, but don't remove evidence (like the repeats).
>>>
>>>
>> Things to change in step 4:
>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>> step
>>> 3
>>> directory to get the smaller contigs annotated.  This should be your
>>> final
>>> step, although you can try altering other parameters or adding more
>>> evidence
>>> sources here etc.
>>>
>>>
>> For other things to keep in mind, you should consider taking extra time
>> to
>> build a comprehensive library of repeats for your species, I know that
>> Petromyzon marinus was virtually unannotatable until we had a very deep
>> repeat library built for it.  Any repeat library should be used in all
>> steps.  Also for lamprey, you will expect between 20,000-30,000 genes
>> both
>> because of your assemblies fragmentation and because of some ancestral
>> genome duplication.  Also be aware that lampreys appear to undergo
>> programmed genome loss in somatic tissues, so any gene count you get is
>> only
>> going to represent a maximum of 75-80% of all genes unless the assembly
>> is
>> derived from germline tissue.
>>
>> Thanks,
>> Carson
>>
>>
>>>
>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>
>>> Hi Parul,
>>>
>>> In step one, if protein2genome isn't turned on, then the protein
>>> alignments
>>> wont be used to generate gene models. Carson said before to use
>>> protein2genome
>>> to generate gene models for your trainings set, but you should know
>>> that
>>> those
>>> data aren't being used right now.
>>>
>>> In step 2, you can include the est and protein evidence that you used
>>> in
>>> step
>>> one, and the ab-initio predictors will takes those data as hints to
>>> guide
>>> their predictions. Also, are you reannotating human here? I'm just
>>> wondering
>>> why the snap file is called Pult, but the augustus species model is
>>> human.
>>> Also, I think you should include the same masking files from step 1,
>>> otherwise
>>> the ab-initio predictors will be predicting on the unmasked sequence
>>> which
>>> will give you many spurious predictions.
>>>
>>> In step 3, I'm not certain what you mean by boot-strapping. The control
>>> file
>>> you sent for step 3 will just pass-through all of the data from before.
>>>
>>> In step 4, I think what you'll get is pretty close to what you already
>>> had in
>>> step 3. The gene models from step 3 are already based on the est and
>>> protein
>>> data from step 1, so without giving any different evidence or ab-initio
>>> predictors, I think that you will just get the same gene models that
>>> you
>>> got
>>> from step 3. Those gene models are what you should be using to train
>>> snap.
>>> Also, is this the same genome as in the other steps? The genome file
>>> here is
>>> called genome.linear.fa, but before it was called genome.fa.
>>>
>>> Step 5. So maker uses both evidence and ab-initio predictions to create
>>> models. If you don't give any evidence (EST or protein) maker will not
>>> annotate any gene models. You have also changed the augustus species
>>> model in
>>> this step, but I don't know what you've gained by going from one
>>> species
>>> to
>>> another. You should be training augustus with the gene models and then
>>> creating a new species model in augustus. As I understand it, the
>>> filter
>>> only
>>> operates on gene models, not ab-initio predictions or alignments, so it
>>> probably isn't doing anything the way you have it set.
>>>
>>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>>> mean by
>>> boot-strapping here too.
>>>
>>> Hopefully that clears up some of the confusion with how maker works.
>>> Carson
>>> will probably have a lot of suggestions too.
>>>
>>> Thanks,
>>> Daniel
>>>
>>> Daniel Ence
>>> Graduate Student
>>> Eccles Institute of Human Genetics
>>> University of Utah
>>> 15 North 2030 East, Room 2100
>>> Salt Lake City, UT 84112-5330
>>> ________________________________________
>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>> Sent: Thursday, December 06, 2012 10:08 AM
>>> To: carsonhh at gmail.com
>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>> Subject: Re: [maker-devel] AED score
>>>
>>> Hi Carson,
>>>
>>> Once again thanks for a quick response. We expect to get 25,000 to
>>> 30,000
>>> genes.
>>> Here are the step
>>> Step1. EST and proteins are used to predict gene-models. the resulting
>>> file is used as training data-set for SNAP in step2. est2genome is
>>> turned
>>> ON
>>> Step2. Augustus and SNAP is used to predict genes.
>>> Step3. The results are re-annoated(boot-strap)
>>> Step4. EST and proteins are used to predict gene-models. The gff file
>>> from
>>> step3. is used as model_gff. The resulting file is used as training
>>> data-set for SNAP in step2
>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>>> contig_size to 10kb
>>>
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>
>>> I have attached the configuration file for each step.
>>>>  Your output has no genes.  They've all been filtered out.  The gene
>>> predictions are left for reference purposes, but there are no gene
>>> models
>>>>  in the file.  You need to look at the type columns in the GFF3 file
>>>> -->
>>> match/match_part features are evidence and reference data but not
>>> models.
>>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>>> just
>>> want gene models in your file you can use the gff3_merge script with
>>> the
>>> -g option, and it will only print out the gene models.
>>>>  I think you may be misinterpreting what is happening at different
>>>> steps,
>>> as well as how to read the result files.  Could you give me a detailed
>>> explanation of what you expect to get back together with your control
>>> files and I can walk you through the configuration, and indicate what
>>> to
>>> expect.  Also what was the report like from CEGMA. Could you include
>>> the
>>> report file that shows how complete your genome is and how fragmented
>>> it
>>> is?
>>>>  Thanks,
>>>>  Carson
>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>> Dear Carson,
>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>> Though for previous step(ab-intio gene predictions keep_preds was set
>>>>> to
>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>> Scaffold1_out.gff.
>>>>> Please advice.
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>>  You should always get all predictions, but should only get models
>>> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>> keep_preds set.
>>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>>> your
>>> threshold (not match/match_part features)?  If the first one is the
>>>>>> case,
>>>>>>  just set it to 0.  If the second one in the case, could you send me
>>> example GFF3?
>>>>>>  Thanks,
>>>>>>  Carson
>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Dear Carson,
>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>> short
>>>>>>>  ESTs.
>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>> prediction(used as training dataset)and abinitio gene-prediction).
>>> Here
>>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>>  however
>>>>>>>  I
>>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>>  resulting
>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>>  initial
>>>>>>> gff3 file.
>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>  eukaryotic
>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>> file
>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes,
>>>>>>> 0
>>>>>>> =
>>> no
>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 =
>>>>>>> no
>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>>  no
>>>>>>> #-----MAKER Behavior Options
>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound
>>>>>>> by
>>> 0
>>>>>>> and 1)
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>> partial
>>>>>>>> at
>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>> those
>>> by
>>>>>>>>  using maker's est_gff option to pass in results from cufflinks or
>>>>>>>> trinity.
>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
>>> size,
>>>>>>>> just
>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>> maker_opts.ctl file.
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611 with
>>> N50
>>>>>>>>>  of
>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>> reason
>>>>>>>>>  when
>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>> predicted
>>> despite the model_gff file has few genes with scores less than 0.75?
>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>  There are certain characteristics that are apparent in this
>>> contig.
>>>>>>>>> First
>>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>>> also
>>>>>>>>> have
>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>> getting
>>> many
>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>> models
>>> that
>>>>>>>>> are
>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>> piece
>>>>>>>>> of
>>>>>>>>> a
>>>>>>>>> gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>>>  unless
>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>>  protein
>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>> need
>>> to
>>>>>>>>> add
>>>>>>>>>  more proteins from a couple of related species, and you might
>>> consider
>>>>>>>>> using protein2genome rather than est2genome as a predictor if you
>>> are
>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>> produced
>>> models
>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome with
>>> the
>>>>>>>>> AED_threshold with such limited protein support does create an
>>> artificial
>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>  How many contigs do you have in total and what is the N50 value
>>> for
>>>>>>>>> the
>>>>>>>>> assembly? If you have a large number of very short contigs, you
>>>>>>>>> will
>>>>>>>>>  get
>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>> contigs
>>>>>>>>>  and
>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>> just
>>> assembled in a slightly different way (so you can get bits and
>>> pieces
>>>>>>>>>  of
>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>  confounding
>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>> would
>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>  completeness
>>>>>>>>> as
>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>> statistics
>>>>>>>>> produced
>>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>>> those
>>>>>>>>>  that
>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to
>>>>>>>>> be
>>> shorter
>>>>>>>>>  and less intron rich than other genes in the genome, so if CEGMA
>>> gives
>>>>>>>>>  a
>>>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>>>  pattern
>>>>>>>>> can be expected to be even more exaggerated for other genes in
>>>>>>>>> the
>>> genome.
>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>> well
>>> then
>>>>>>>>> there are other strategies.  For example, some vertebrate genomes
>>> end
>>>>>>>>>  up
>>>>>>>>> having extremely fragmented assemblies (on the order of 100,000
>>> contigs),
>>>>>>>>>  and if they are distantly related to other annotated species few
>>>>>>>>> proteins
>>>>>>>>>  may align to the contigs because the introns in the alignments
>>> tend
>>>>>>>>>  to
>>>>>>>>> be
>>>>>>>>>  so long and exons so short that it pushes down the significance
>>> scores
>>>>>>>>> too
>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
>>> only
>>>>>>>>>  way
>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED score.
>>> The
>>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>>> file
>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>  least
>>>>>>>>>  5
>>>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>>>  predicted
>>>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>>>> attached
>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>> just
>>>>>>>>> want
>>>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>>>> maker.
>>>>>>>>> On
>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>> training
>>>>>>>>>  gene
>>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>>  dataset
>>>>>>>>> for
>>>>>>>>>  SNAP training.  There are a number of filters available. Just
>>> call
>>>>>>>>>  the
>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>> wrote:
>>>>>>>>> Hi Parul,
>>>>>>>>> I think the way you described (with the maker_opts.ctl file) is
>>> how
>>>>>>>>> you
>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>> Daniel
>>>>>>>>> Daniel Ence
>>>>>>>>> Graduate Student
>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>> University of Utah
>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>> ________________________________________
>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>  Kudtarkar
>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>> Also, are there any other parameters that are required when
>>> filtering
>>>>>>>>> based on AED score?
>>>>>>>>>  Hello Carson,
>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>> models
>>>>>>>>> at
>>>>>>>>> specific AED score.
>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>> to
>>>>>>>>> parameters
>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>> genes
>>>>>>>>> gff3
>>>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>>> Thanks and regards,
>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>> 1
>>>>>>>>>  is
>>>>>>>>> worst
>>>>>>>>>  as
>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>> parameter
>>>>>>>>> to
>>>>>>>>>  require better matching to the evidence by setting it closer
>>> to
>>>>>>>>> 0.
>>>>>>>>> You
>>>>>>>>>  can
>>>>>>>>>  also try to increase protein homology evidence as some of
>>> your
>>>>>>>>> calls
>>>>>>>>> may
>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>  --Carson
>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>> Dear Maker community,
>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>  based
>>>>>>>>> prediction, I use this data-set to train SNAP as well as Augustus
>>> predictions, followed by boot-strapping. I would typically expect
>>> 20-30K
>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>  indicating
>>>>>>>>>  too
>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>> predication/script to retain predictions with AED score 1 and if
>>>>>>>>> yes
>>>>>>>>> how
>>>>>>>>> to go about this?
>>>>>>>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>> -l
>>>>>>>>> ab
>>>>>>>>> .o
>>>>>>>>> rg
>>>>>>>>>  --
>>>>>>>>>  Scientific Programmer
>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>  Beckman Institute,
>>>>>>>>>  California Institute of Technology
>>>>>>>>>  http://www.spbase.org
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>>> b.
>>>>>>>>> or
>>>>>>>>> g
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>>> b.
>>>>>>>>> or
>>>>>>>>> g
>>>>>>>>>  _______________________________________________
>>>>>>>>>  maker-devel mailing list
>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>>> .o
>>>>>>>>> rg
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>>
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>>
>>>
>>
>>
>>
>
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From carsonhh at gmail.com  Fri Dec  7 18:23:18 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 07 Dec 2012 20:23:18 -0500
Subject: [maker-devel] AED score
In-Reply-To: <2516.131.215.15.234.1354928993.squirrel@webmail.caltech.edu>
Message-ID: <CCE7FF16.16F0A%carsonhh@gmail.com>

Yes.  Lamprey is not a good match for sea urchin.  When training Augusuts
you can sometimes use other genomes as starting points and let Augustus
then modify that species to match the models you provided, which can be
better than de novo training under certain circumstances. But given sea
urchin's evolutionary distance from all the other species bundled with
augustus, its probably not a good starting point.  So protein2genome
derived models and cegma based training are probably your best options.

--Carson


On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Sorry for not checking this before, just to answer my own question I just
>found after reading augustus documentation that autoAugTrain.pl should
>work for generating training dataset for Augustus from using the
>gene-model hints from first pass run of maker and using
>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script to
>generate training.gb
>
>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>
>I believe should work better than using lamprey to train augustus.
>
>Thanks and regards,
>Parul Kudtarkar
>
>> Dear Carson,
>>
>> Thanks for detailed explanation and help. Now we know the exact
>>parameters
>> that should help us with generating good gene-model.
>>
>> The genome for which we are working on gene predictions is
>> Echinoderm(sea-urchin). lamprey was the closest organism for training
>> augustus that I could find. A quick question for training augustus,
>>there
>> is augustus_species option how would you go from training data generated
>> by zff2augustus_gbk.pl > train.gb as specified here
>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>> generating the species folder that can be specified to augustus_species
>> option.
>>
>> The average expected gene-length in our case is ~15kb.
>> We also have a good repeat library for our genome.
>>
>> Thanks and regards,
>> Parul Kudtarkar
>>
>>> For step 2 and 3, use lamprey rather than human in augustus.  For some
>>> reason the current version of augustus doesn't diplay it as an option
>>> for
>>> the species help menu (so I didn't see it), but it's there in
>>> ?/augustus/config/species/lamprey
>>>
>>> For any additional training, make copies into
>>> ?/augustus/config/species/lamprey2 and
>>> ?/augustus/config/species/lamprey3
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>
>>> From:  Carson Holt <carsonhh at gmail.com>
>>> Date:  Friday, 7 December, 2012 10:22 AM
>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>> "maker-devel at yandell-lab.org"
>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>> Subject:  Re: [maker-devel] AED score
>>>
>>> Just to add to Daniels comments.
>>>
>>> Things to change in step 1:
>>>> protein= <just try and add more protein evidence in general>
>>>> est2genome=0
>>>> protein2genome=1
>>>> split_hit=20000
>>>> min_contig=50000
>>>
>>> Reasoning:
>>>> Your ESTs are very short especially if this is a lamprey species which
>>>> have
>>>> very long introns and really short exons.  In lamprey (i.e. Petromyzon
>>>> marinus), genes tend to be very long (remember gene lengths include
>>>> introns
>>>> and UTR and is not just the size of the coding sequence), so contigs
>>>> shorter
>>>> than 50kb are useless for training as you are unlikely to get nice
>>>> complete
>>>> gene models on those.  Also lampreys have very long introns, so you
>>>> have
>>>> to
>>>> allow for bigger introns in alignments (split_hit parameter).  Finally
>>>> add as
>>>> much protein evidence from as many sources as possible.  Your maker
>>>> training
>>>> run will take a long time as proteins take forever to align, but
>>>> because
>>>> of
>>>> the evolutionary distance of lamprey from everything else and the
>>>>short
>>>> exon
>>>> structure of its genome, very little aligns directly to its genome
>>>>from
>>>> other
>>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>>> species
>>>> because of what you said about the  augustus species file you are
>>>> using.
>>>> Really the only thing closely related to lampreys unfortunately are
>>>> other
>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>>>> lamprey
>>>> (while they branch closely together on the tree of life, there are too
>>>> many
>>>> years since the last common ancestor).  So while they may have similar
>>>> issues
>>>> related to annotation (long introns and short exons etc.) they will
>>>>not
>>>> really
>>>> match that well for the gene predictor or even protein alignments.
>>>
>>> Additional note:
>>>> I have training files for the lamprey species Petromyzon marinus for
>>>> both
>>>> Augustus and SNAP that I could share with you in a few week, when the
>>>> genome
>>>> publication is is released.  But before that happens, new gene models
>>>> will be
>>>> available  through the UCSC browser (hopefully within a couple of
>>>> weeks), and
>>>> gene models are already available through ENSEMBL.  Get those protein
>>>> files
>>>> for training, it may be a big help for you.  If you want early access
>>>> to
>>>> the
>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>request
>>>> it
>>>> from Weiming Li at Michigan State University (the head of that genome
>>>> project).
>>>>
>>>
>>>
>>> Things to change in step 2:
>>>> Optimally you would be doing de novo training using mRNAseq results,
>>>> but
>>>> with
>>>> on;ly sparse protein alignments and such a fragmented assembly, you
>>>>are
>>>> probably better off just trying to adapt the human HMM files.  They
>>>> won't
>>>> match that well, but you probably won't have the evidence for De Novo
>>>> training.  First make a copy of the augustus human species directory
>>>> and
>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>>> retraining
>>>> augustus using your new models.  You will have to edit multiple files
>>>> in
>>>> the
>>>> directory after you copy it so that they no longer say human or homo
>>>> sapiens
>>>> internally or in the file name.  Use maker2zff to generate the
>>>>filtered
>>>> ZFF
>>>> file for training SNAP, but don't train SNAP.  Rather use the training
>>>> file to
>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>
>>>> MAKE a backup of the step 1 maker output directory and run step 2 in
>>>> the
>>>> old
>>>> step 1 directory (this allows you to change the parameters and reuse
>>>> files
>>>> form step 1 so you don't have to recalculate all the protein and EST
>>>> alignments).  So control files for step 2 are identical to step 1
>>>> except
>>>> for
>>>> these parameters.
>>>>
>>>> protein2genome=0
>>>> augustus_species=lamprey
>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>
>>>> Don't both training SNAP here as you probably won't have enough data
>>>> and
>>>> you
>>>> assembly is too fragmented for it to work well, so just stick to
>>>> augustus.
>>>> Try SNAP if you want just to see how well it works.  Manually open up
>>>> the
>>>> largest contigs in a viewer to look at the models produced from the
>>>> MAKER run
>>>> to see if they look reasonable (this will also help you decide whether
>>>> to keep
>>>> SNAP).
>>>>
>>>
>>> Things to change in step 3:
>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>>>> make
>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>> ?/augustus/config/species/lamprey2 (editing all the files and names as
>>>> you did
>>>> in step 2). This way you don't loose that training data if you decide
>>>> to
>>>> step
>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>
>>>> augustus_species=lamprey2
>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>
>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>> (This
>>>> is
>>>> for file reuse, so the step will run fast).  This must be the exact
>>>> same
>>>> step
>>>> directory as step 2 for the reuse trick to work.
>>>>
>>>> Manually review the models and if you are satisfied move to step 4.
>>>> Also note
>>>> that most parameters including the protein, EST, and repeats should
>>>>not
>>>> change
>>>> from step1-step3, and should not be removed for step 4 either, you can
>>>> add
>>>> more evidence, but don't remove evidence (like the repeats).
>>>>
>>>>
>>> Things to change in step 4:
>>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>>> step
>>>> 3
>>>> directory to get the smaller contigs annotated.  This should be your
>>>> final
>>>> step, although you can try altering other parameters or adding more
>>>> evidence
>>>> sources here etc.
>>>>
>>>>
>>> For other things to keep in mind, you should consider taking extra time
>>> to
>>> build a comprehensive library of repeats for your species, I know that
>>> Petromyzon marinus was virtually unannotatable until we had a very deep
>>> repeat library built for it.  Any repeat library should be used in all
>>> steps.  Also for lamprey, you will expect between 20,000-30,000 genes
>>> both
>>> because of your assemblies fragmentation and because of some ancestral
>>> genome duplication.  Also be aware that lampreys appear to undergo
>>> programmed genome loss in somatic tissues, so any gene count you get is
>>> only
>>> going to represent a maximum of 75-80% of all genes unless the assembly
>>> is
>>> derived from germline tissue.
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>>
>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>
>>>> Hi Parul,
>>>>
>>>> In step one, if protein2genome isn't turned on, then the protein
>>>> alignments
>>>> wont be used to generate gene models. Carson said before to use
>>>> protein2genome
>>>> to generate gene models for your trainings set, but you should know
>>>> that
>>>> those
>>>> data aren't being used right now.
>>>>
>>>> In step 2, you can include the est and protein evidence that you used
>>>> in
>>>> step
>>>> one, and the ab-initio predictors will takes those data as hints to
>>>> guide
>>>> their predictions. Also, are you reannotating human here? I'm just
>>>> wondering
>>>> why the snap file is called Pult, but the augustus species model is
>>>> human.
>>>> Also, I think you should include the same masking files from step 1,
>>>> otherwise
>>>> the ab-initio predictors will be predicting on the unmasked sequence
>>>> which
>>>> will give you many spurious predictions.
>>>>
>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>control
>>>> file
>>>> you sent for step 3 will just pass-through all of the data from
>>>>before.
>>>>
>>>> In step 4, I think what you'll get is pretty close to what you already
>>>> had in
>>>> step 3. The gene models from step 3 are already based on the est and
>>>> protein
>>>> data from step 1, so without giving any different evidence or
>>>>ab-initio
>>>> predictors, I think that you will just get the same gene models that
>>>> you
>>>> got
>>>> from step 3. Those gene models are what you should be using to train
>>>> snap.
>>>> Also, is this the same genome as in the other steps? The genome file
>>>> here is
>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>
>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>create
>>>> models. If you don't give any evidence (EST or protein) maker will not
>>>> annotate any gene models. You have also changed the augustus species
>>>> model in
>>>> this step, but I don't know what you've gained by going from one
>>>> species
>>>> to
>>>> another. You should be training augustus with the gene models and then
>>>> creating a new species model in augustus. As I understand it, the
>>>> filter
>>>> only
>>>> operates on gene models, not ab-initio predictions or alignments, so
>>>>it
>>>> probably isn't doing anything the way you have it set.
>>>>
>>>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>>>> mean by
>>>> boot-strapping here too.
>>>>
>>>> Hopefully that clears up some of the confusion with how maker works.
>>>> Carson
>>>> will probably have a lot of suggestions too.
>>>>
>>>> Thanks,
>>>> Daniel
>>>>
>>>> Daniel Ence
>>>> Graduate Student
>>>> Eccles Institute of Human Genetics
>>>> University of Utah
>>>> 15 North 2030 East, Room 2100
>>>> Salt Lake City, UT 84112-5330
>>>> ________________________________________
>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>> To: carsonhh at gmail.com
>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>> Subject: Re: [maker-devel] AED score
>>>>
>>>> Hi Carson,
>>>>
>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>> 30,000
>>>> genes.
>>>> Here are the step
>>>> Step1. EST and proteins are used to predict gene-models. the resulting
>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>> turned
>>>> ON
>>>> Step2. Augustus and SNAP is used to predict genes.
>>>> Step3. The results are re-annoated(boot-strap)
>>>> Step4. EST and proteins are used to predict gene-models. The gff file
>>>> from
>>>> step3. is used as model_gff. The resulting file is used as training
>>>> data-set for SNAP in step2
>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to
>>>>0.5
>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>>>> contig_size to 10kb
>>>>
>>>> Thanks and regards,
>>>> Parul Kudtarkar
>>>>
>>>> I have attached the configuration file for each step.
>>>>>  Your output has no genes.  They've all been filtered out.  The gene
>>>> predictions are left for reference purposes, but there are no gene
>>>> models
>>>>>  in the file.  You need to look at the type columns in the GFF3 file
>>>>> -->
>>>> match/match_part features are evidence and reference data but not
>>>> models.
>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>>>> just
>>>> want gene models in your file you can use the gff3_merge script with
>>>> the
>>>> -g option, and it will only print out the gene models.
>>>>>  I think you may be misinterpreting what is happening at different
>>>>> steps,
>>>> as well as how to read the result files.  Could you give me a detailed
>>>> explanation of what you expect to get back together with your control
>>>> files and I can walk you through the configuration, and indicate what
>>>> to
>>>> expect.  Also what was the report like from CEGMA. Could you include
>>>> the
>>>> report file that shows how complete your genome is and how fragmented
>>>> it
>>>> is?
>>>>>  Thanks,
>>>>>  Carson
>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>> Dear Carson,
>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>> Though for previous step(ab-intio gene predictions keep_preds was
>>>>>>set
>>>>>> to
>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>> Scaffold1_out.gff.
>>>>>> Please advice.
>>>>>> Thanks and regards,
>>>>>> Parul Kudtarkar
>>>>>>>  You should always get all predictions, but should only get models
>>>> (match/match_part) with AED scores less than 0.5.  You should never
>>>>get
>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>>> keep_preds set.
>>>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>>>> your
>>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>> case,
>>>>>>>  just set it to 0.  If the second one in the case, could you send
>>>>>>>me
>>>> example GFF3?
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>> Dear Carson,
>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>> short
>>>>>>>>  ESTs.
>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>> prediction(used as training dataset)and abinitio gene-prediction).
>>>> Here
>>>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>>>  however
>>>>>>>>  I
>>>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>>>  resulting
>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>>>  initial
>>>>>>>> gff3 file.
>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>>  eukaryotic
>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>>> file
>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes,
>>>>>>>> 0
>>>>>>>> =
>>>> no
>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 =
>>>>>>>> no
>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>>>  no
>>>>>>>> #-----MAKER Behavior Options
>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound
>>>>>>>> by
>>>> 0
>>>>>>>> and 1)
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>>> partial
>>>>>>>>> at
>>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>>> those
>>>> by
>>>>>>>>>  using maker's est_gff option to pass in results from cufflinks
>>>>>>>>>or
>>>>>>>>> trinity.
>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
>>>> size,
>>>>>>>>> just
>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>> maker_opts.ctl file.
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>with
>>>> N50
>>>>>>>>>>  of
>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>> reason
>>>>>>>>>>  when
>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>> predicted
>>>> despite the model_gff file has few genes with scores less than 0.75?
>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>> contig.
>>>>>>>>>> First
>>>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>>>> also
>>>>>>>>>> have
>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>> getting
>>>> many
>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>> models
>>>> that
>>>>>>>>>> are
>>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>>> piece
>>>>>>>>>> of
>>>>>>>>>> a
>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>reason
>>>>>>>>>>  unless
>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>>>  protein
>>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>>> need
>>>> to
>>>>>>>>>> add
>>>>>>>>>>  more proteins from a couple of related species, and you might
>>>> consider
>>>>>>>>>> using protein2genome rather than est2genome as a predictor if
>>>>>>>>>>you
>>>> are
>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>> produced
>>>> models
>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>with
>>>> the
>>>>>>>>>> AED_threshold with such limited protein support does create an
>>>> artificial
>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>  How many contigs do you have in total and what is the N50 value
>>>> for
>>>>>>>>>> the
>>>>>>>>>> assembly? If you have a large number of very short contigs, you
>>>>>>>>>> will
>>>>>>>>>>  get
>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>> contigs
>>>>>>>>>>  and
>>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>>> just
>>>> assembled in a slightly different way (so you can get bits and
>>>> pieces
>>>>>>>>>>  of
>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>  confounding
>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>> would
>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>  completeness
>>>>>>>>>> as
>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>> statistics
>>>>>>>>>> produced
>>>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>>>> those
>>>>>>>>>>  that
>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to
>>>>>>>>>> be
>>>> shorter
>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>CEGMA
>>>> gives
>>>>>>>>>>  a
>>>>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>>>>  pattern
>>>>>>>>>> can be expected to be even more exaggerated for other genes in
>>>>>>>>>> the
>>>> genome.
>>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>>> well
>>>> then
>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>genomes
>>>> end
>>>>>>>>>>  up
>>>>>>>>>> having extremely fragmented assemblies (on the order of 100,000
>>>> contigs),
>>>>>>>>>>  and if they are distantly related to other annotated species
>>>>>>>>>>few
>>>>>>>>>> proteins
>>>>>>>>>>  may align to the contigs because the introns in the alignments
>>>> tend
>>>>>>>>>>  to
>>>>>>>>>> be
>>>>>>>>>>  so long and exons so short that it pushes down the significance
>>>> scores
>>>>>>>>>> too
>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
>>>> only
>>>>>>>>>>  way
>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>  Thanks,
>>>>>>>>>>  Carson
>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>score.
>>>> The
>>>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>>>> file
>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>  least
>>>>>>>>>>  5
>>>>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>>>>  predicted
>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>>>>> attached
>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>> just
>>>>>>>>>> want
>>>>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>>>>> maker.
>>>>>>>>>> On
>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>> training
>>>>>>>>>>  gene
>>>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>>>  dataset
>>>>>>>>>> for
>>>>>>>>>>  SNAP training.  There are a number of filters available. Just
>>>> call
>>>>>>>>>>  the
>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>  Thanks,
>>>>>>>>>>  Carson
>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>> wrote:
>>>>>>>>>> Hi Parul,
>>>>>>>>>> I think the way you described (with the maker_opts.ctl file) is
>>>> how
>>>>>>>>>> you
>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>> Daniel
>>>>>>>>>> Daniel Ence
>>>>>>>>>> Graduate Student
>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>> University of Utah
>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>> ________________________________________
>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>  Kudtarkar
>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>> Also, are there any other parameters that are required when
>>>> filtering
>>>>>>>>>> based on AED score?
>>>>>>>>>>  Hello Carson,
>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>> models
>>>>>>>>>> at
>>>>>>>>>> specific AED score.
>>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>>> to
>>>>>>>>>> parameters
>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>> genes
>>>>>>>>>> gff3
>>>>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>>>> Thanks and regards,
>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>>> 1
>>>>>>>>>>  is
>>>>>>>>>> worst
>>>>>>>>>>  as
>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>> parameter
>>>>>>>>>> to
>>>>>>>>>>  require better matching to the evidence by setting it closer
>>>> to
>>>>>>>>>> 0.
>>>>>>>>>> You
>>>>>>>>>>  can
>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>> your
>>>>>>>>>> calls
>>>>>>>>>> may
>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>  --Carson
>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>> Dear Maker community,
>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>  based
>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>Augustus
>>>> predictions, followed by boot-strapping. I would typically expect
>>>> 20-30K
>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>  indicating
>>>>>>>>>>  too
>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>> predication/script to retain predictions with AED score 1 and if
>>>>>>>>>> yes
>>>>>>>>>> how
>>>>>>>>>> to go about this?
>>>>>>>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>> -l
>>>>>>>>>> ab
>>>>>>>>>> .o
>>>>>>>>>> rg
>>>>>>>>>>  --
>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>> 
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>a
>>>> b.
>>>>>>>>>> or
>>>>>>>>>> g
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>> 
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>a
>>>> b.
>>>>>>>>>> or
>>>>>>>>>> g
>>>>>>>>>>  _______________________________________________
>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>> 
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>ab
>>>> .o
>>>>>>>>>> rg
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>>
>>>>
>>>> --
>>>> Scientific Programmer
>>>> Center for Computational Regulatory Genomics
>>>> Beckman Institute,
>>>> California Institute of Technology
>>>> http://www.spbase.org
>>>>
>>>> --
>>>> Scientific Programmer
>>>> Center for Computational Regulatory Genomics
>>>> Beckman Institute,
>>>> California Institute of Technology
>>>> http://www.spbase.org
>>>>
>>>>
>>>>
>>>
>>>
>>>
>>
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>





From mark.rose at syngenta.com  Sat Dec  8 09:06:00 2012
From: mark.rose at syngenta.com (mark.rose at syngenta.com)
Date: Sat, 8 Dec 2012 11:06:00 -0500
Subject: [maker-devel] FW: maker error
In-Reply-To: <50C36102.6080306@mark62.me>
References: <50C36102.6080306@mark62.me>
Message-ID: <F0C46C4D691E2047A95E0293D5660AD00BC1359B99@USETCMSXMB03.NAFTA.SYNGENTA.ORG>

Hi

I just installed maker and am trying to run it with the sample data but get the following error:

$ maker
STATUS: Parsing control files...
WARNING: RepBase is not installed for RepeatMasker. This limits RepeatMasker's functionality and makes the model_org option in the control files virtually meaningless. MAKER will now reconfigure for simple repeat masking only.
STATUS: Processing and indexing input FASTA files...
Segmentation fault (core dumped)

I've attached the config files and the output of $maker --debug

Thanks for your help

Mark




This message may contain confidential information. If you are not the designated recipient, please notify the sender immediately, and delete the original and any copies. Any use of the message by you is prohibited. 
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	UNKNOWN	Bio::Root::IO	/usr/local/share/perl/5.14.2/Bio/Root/IO.pm
	UNKNOWN	Bio::Root::Root	/usr/local/share/perl/5.14.2/Bio/Root/Root.pm
	1.006901	Bio::Root::RootI	/usr/local/share/perl/5.14.2/Bio/Root/RootI.pm
	1.006901	Bio::Root::Version	/usr/local/share/perl/5.14.2/Bio/Root/Version.pm
	UNKNOWN	Bio::Search::HSP::GenericHSP	/usr/local/share/perl/5.14.2/Bio/Search/HSP/GenericHSP.pm
	UNKNOWN	Bio::Search::HSP::HSPFactory	/usr/local/share/perl/5.14.2/Bio/Search/HSP/HSPFactory.pm
	UNKNOWN	Bio::Search::HSP::HSPI	/usr/local/share/perl/5.14.2/Bio/Search/HSP/HSPI.pm
	0.01	Bio::Search::HSP::PhatHSP::Base	/usr/local/genome/maker/bin/../lib/Bio/Search/HSP/PhatHSP/Base.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::augustus	/usr/local/genome/maker/bin/../lib/Bio/Search/HSP/PhatHSP/augustus.pm
	0.01	Bio::Search::HSP::PhatHSP::blastn	/usr/local/genome/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastn.pm
	0.01	Bio::Search::HSP::PhatHSP::blastx	/usr/local/genome/maker/bin/../lib/Bio/Search/HSP/PhatHSP/blastx.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::est2genome	/usr/local/genome/maker/bin/../lib/Bio/Search/HSP/PhatHSP/est2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/usr/local/genome/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::genemark	/usr/local/genome/maker/bin/../lib/Bio/Search/HSP/PhatHSP/genemark.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/usr/local/genome/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/usr/local/genome/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::repeatmasker	/usr/local/genome/maker/bin/../lib/Bio/Search/HSP/PhatHSP/repeatmasker.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::snap	/usr/local/genome/maker/bin/../lib/Bio/Search/HSP/PhatHSP/snap.pm
	0.01	Bio::Search::HSP::PhatHSP::tblastx	/usr/local/genome/maker/bin/../lib/Bio/Search/HSP/PhatHSP/tblastx.pm
	1.006901	Bio::Search::Hit::GenericHit	/usr/local/share/perl/5.14.2/Bio/Search/Hit/GenericHit.pm
	UNKNOWN	Bio::Search::Hit::HitFactory	/usr/local/share/perl/5.14.2/Bio/Search/Hit/HitFactory.pm
	UNKNOWN	Bio::Search::Hit::HitI	/usr/local/share/perl/5.14.2/Bio/Search/Hit/HitI.pm
	0.01	Bio::Search::Hit::PhatHit::Base	/usr/local/genome/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::augustus	/usr/local/genome/maker/bin/../lib/Bio/Search/Hit/PhatHit/augustus.pm
	0.01	Bio::Search::Hit::PhatHit::blastn	/usr/local/genome/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastn.pm
	0.01	Bio::Search::Hit::PhatHit::blastx	/usr/local/genome/maker/bin/../lib/Bio/Search/Hit/PhatHit/blastx.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::est2genome	/usr/local/genome/maker/bin/../lib/Bio/Search/Hit/PhatHit/est2genome.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::fgenesh	/usr/local/genome/maker/bin/../lib/Bio/Search/Hit/PhatHit/fgenesh.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::genemark	/usr/local/genome/maker/bin/../lib/Bio/Search/Hit/PhatHit/genemark.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::gff3	/usr/local/genome/maker/bin/../lib/Bio/Search/Hit/PhatHit/gff3.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::protein2genome	/usr/local/genome/maker/bin/../lib/Bio/Search/Hit/PhatHit/protein2genome.pm
	1.006901	Bio::Search::Hit::PhatHit::repeatmasker	/usr/local/genome/maker/bin/../lib/Bio/Search/Hit/PhatHit/repeatmasker.pm
	UNKNOWN	Bio::Search::Hit::PhatHit::snap	/usr/local/genome/maker/bin/../lib/Bio/Search/Hit/PhatHit/snap.pm
	0.01	Bio::Search::Hit::PhatHit::tblastx	/usr/local/genome/maker/bin/../lib/Bio/Search/Hit/PhatHit/tblastx.pm
	1.006901	Bio::Search::SearchUtils	/usr/local/share/perl/5.14.2/Bio/Search/SearchUtils.pm
	UNKNOWN	Bio::SearchIO	/usr/local/share/perl/5.14.2/Bio/SearchIO.pm
	UNKNOWN	Bio::SearchIO::EventHandlerI	/usr/local/share/perl/5.14.2/Bio/SearchIO/EventHandlerI.pm
	UNKNOWN	Bio::SearchIO::SearchResultEventBuilder	/usr/local/share/perl/5.14.2/Bio/SearchIO/SearchResultEventBuilder.pm
	UNKNOWN	Bio::Seq	/usr/local/share/perl/5.14.2/Bio/Seq.pm
	UNKNOWN	Bio::Seq::SeqFactory	/usr/local/share/perl/5.14.2/Bio/Seq/SeqFactory.pm
	UNKNOWN	Bio::SeqAnalysisParserI	/usr/local/share/perl/5.14.2/Bio/SeqAnalysisParserI.pm
	UNKNOWN	Bio::SeqFeature::FeaturePair	/usr/local/share/perl/5.14.2/Bio/SeqFeature/FeaturePair.pm
	UNKNOWN	Bio::SeqFeature::Generic	/usr/local/share/perl/5.14.2/Bio/SeqFeature/Generic.pm
	UNKNOWN	Bio::SeqFeature::Similarity	/usr/local/share/perl/5.14.2/Bio/SeqFeature/Similarity.pm
	UNKNOWN	Bio::SeqFeature::SimilarityPair	/usr/local/share/perl/5.14.2/Bio/SeqFeature/SimilarityPair.pm
	UNKNOWN	Bio::SeqFeatureI	/usr/local/share/perl/5.14.2/Bio/SeqFeatureI.pm
	UNKNOWN	Bio::SeqI	/usr/local/share/perl/5.14.2/Bio/SeqI.pm
	UNKNOWN	Bio::SeqUtils	/usr/local/share/perl/5.14.2/Bio/SeqUtils.pm
	UNKNOWN	Bio::Tools::CodonTable	/usr/local/share/perl/5.14.2/Bio/Tools/CodonTable.pm
	UNKNOWN	Bio::Tools::GFF	/usr/local/share/perl/5.14.2/Bio/Tools/GFF.pm
	UNKNOWN	Bio::Tools::IUPAC	/usr/local/share/perl/5.14.2/Bio/Tools/IUPAC.pm
	7.2	Bit::Vector	/usr/local/lib/perl/5.14.2/Bit/Vector.pm
	0.01	CGL::Annotation	/usr/local/genome/maker/bin/../lib/CGL/Annotation.pm
	0.01	CGL::Annotation::Feature	/usr/local/genome/maker/bin/../lib/CGL/Annotation/Feature.pm
	0.01	CGL::Annotation::Feature::Contig	/usr/local/genome/maker/bin/../lib/CGL/Annotation/Feature/Contig.pm
	0.01	CGL::Annotation::Feature::Exon	/usr/local/genome/maker/bin/../lib/CGL/Annotation/Feature/Exon.pm
	0.01	CGL::Annotation::Feature::Gene	/usr/local/genome/maker/bin/../lib/CGL/Annotation/Feature/Gene.pm
	0.01	CGL::Annotation::Feature::Intron	/usr/local/genome/maker/bin/../lib/CGL/Annotation/Feature/Intron.pm
	0.01	CGL::Annotation::Feature::Protein	/usr/local/genome/maker/bin/../lib/CGL/Annotation/Feature/Protein.pm
	0.01	CGL::Annotation::Feature::Sequence_variant	/usr/local/genome/maker/bin/../lib/CGL/Annotation/Feature/Sequence_variant.pm
	0.01	CGL::Annotation::Feature::Transcript	/usr/local/genome/maker/bin/../lib/CGL/Annotation/Feature/Transcript.pm
	0.01	CGL::Annotation::FeatureLocation	/usr/local/genome/maker/bin/../lib/CGL/Annotation/FeatureLocation.pm
	0.01	CGL::Annotation::FeatureRelationship	/usr/local/genome/maker/bin/../lib/CGL/Annotation/FeatureRelationship.pm
	0.01	CGL::Annotation::Iterator	/usr/local/genome/maker/bin/../lib/CGL/Annotation/Iterator.pm
	0.01	CGL::Annotation::Trace	/usr/local/genome/maker/bin/../lib/CGL/Annotation/Trace.pm
	0.01	CGL::Clone	/usr/local/genome/maker/bin/../lib/CGL/Clone.pm
	0.01	CGL::Ontology::Node	/usr/local/genome/maker/bin/../lib/CGL/Ontology/Node.pm
	0.01	CGL::Ontology::NodeRelationship	/usr/local/genome/maker/bin/../lib/CGL/Ontology/NodeRelationship.pm
	0.01	CGL::Ontology::Ontology	/usr/local/genome/maker/bin/../lib/CGL/Ontology/Ontology.pm
	0.01	CGL::Ontology::Parser::OBO	/usr/local/genome/maker/bin/../lib/CGL/Ontology/Parser/OBO.pm
	0.01	CGL::Ontology::SO	/usr/local/genome/maker/bin/../lib/CGL/Ontology/SO.pm
	0.01	CGL::Ontology::Trace	/usr/local/genome/maker/bin/../lib/CGL/Ontology/Trace.pm
	0.01	CGL::Revcomp	/usr/local/genome/maker/bin/../lib/CGL/Revcomp.pm
	0.01	CGL::TranslationMachine	/usr/local/genome/maker/bin/../lib/CGL/TranslationMachine.pm
	1.26	Carp	/usr/local/share/perl/5.14.2/Carp.pm
	1.26	Carp::Heavy	/usr/local/share/perl/5.14.2/Carp/Heavy.pm
	0.63	Class::Struct	/usr/share/perl/5.14/Class/Struct.pm
	0.31	Clone	/usr/lib/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib/perl/5.14/Config.pm
	3.33	Cwd	/usr/lib/perl5/Cwd.pm
	1.35	DBD::SQLite	/usr/lib/perl5/DBD/SQLite.pm
	1.616	DBI	/usr/lib/perl5/DBI.pm
	1.821	DB_File	/usr/lib/perl/5.14/DB_File.pm
	2.130_02	Data::Dumper	/usr/lib/perl/5.14/Data/Dumper.pm
	0.11	Datastore::Base	/usr/local/genome/maker/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/usr/local/genome/maker/bin/../lib/Datastore/MD5.pm
	2.51	Digest::MD5	/usr/lib/perl/5.14/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl/5.14/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/usr/local/genome/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/usr/local/genome/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/usr/local/genome/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	1.13	DynaLoader	/usr/lib/perl/5.14/DynaLoader.pm
	1.13	Errno	/usr/lib/perl/5.14/Errno.pm
	0.17015	Error	/usr/local/genome/maker/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/usr/local/genome/maker/bin/../lib/Error/Simple.pm
	5.64_03	Exporter	/usr/share/perl/5.14/Exporter.pm
	5.64_03	Exporter::Heavy	/usr/share/perl/5.14/Exporter/Heavy.pm
	UNKNOWN	Fasta	/usr/local/genome/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/usr/local/genome/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/usr/local/genome/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/usr/local/genome/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/usr/local/genome/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/usr/local/genome/maker/bin/../lib/FastaSeq.pm
	1.11	Fcntl	/usr/lib/perl/5.14/Fcntl.pm
	2.82	File::Basename	/usr/share/perl/5.14/File/Basename.pm
	2.21	File::Copy	/usr/share/perl/5.14/File/Copy.pm
	1.13	File::Glob	/usr/lib/perl/5.14/File/Glob.pm
	1.20	File::NFSLock	/usr/local/genome/maker/bin/../lib/File/NFSLock.pm
	2.08_01	File::Path	/usr/share/perl/5.14/File/Path.pm
	3.33	File::Spec	/usr/lib/perl5/File/Spec.pm
	3.33	File::Spec::Unix	/usr/lib/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl/5.14/File/Temp.pm
	1.09	File::Which	/usr/local/genome/maker/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl/5.14/FileHandle.pm
	1.50	FindBin	/usr/share/perl/5.14/FindBin.pm
	UNKNOWN	GFFDB	/usr/local/genome/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/usr/local/genome/maker/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl/5.14/Getopt/Long.pm
	6.00	HTTP::Date	/usr/share/perl5/HTTP/Date.pm
	6.04	HTTP::Headers	/usr/local/share/perl/5.14.2/HTTP/Headers.pm
	6.04	HTTP::Message	/usr/local/share/perl/5.14.2/HTTP/Message.pm
	6.00	HTTP::Request	/usr/local/share/perl/5.14.2/HTTP/Request.pm
	6.04	HTTP::Response	/usr/local/share/perl/5.14.2/HTTP/Response.pm
	6.03	HTTP::Status	/usr/local/share/perl/5.14.2/HTTP/Status.pm
	1.25_04	IO	/usr/lib/perl/5.14/IO.pm
	1.15	IO::File	/usr/lib/perl/5.14/IO/File.pm
	1.31	IO::Handle	/usr/lib/perl/5.14/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib/perl/5.14/IO/Seekable.pm
	1.20	IO::Select	/usr/lib/perl/5.14/IO/Select.pm
	1.32	IO::Socket	/usr/lib/perl/5.14/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib/perl/5.14/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib/perl/5.14/IO/Socket/UNIX.pm
	1.09	IPC::Open3	/usr/share/perl/5.14/IPC/Open3.pm
	0.51	Inline	/usr/local/share/perl/5.14.2/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl/5.14.2/Inline/denter.pm
	UNKNOWN	Iterator	/usr/local/genome/maker/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/usr/local/genome/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/usr/local/genome/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/usr/local/genome/maker/bin/../lib/Iterator/GFF3.pm
	6.04	LWP	/usr/local/share/perl/5.14.2/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/local/share/perl/5.14.2/LWP/MemberMixin.pm
	6.00	LWP::Protocol	/usr/local/share/perl/5.14.2/LWP/Protocol.pm
	6.04	LWP::UserAgent	/usr/local/share/perl/5.14.2/LWP/UserAgent.pm
	0.33	List::MoreUtils	/usr/lib/perl5/List/MoreUtils.pm
	1.23	List::Util	/usr/lib/perl/5.14/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/usr/local/genome/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.24	POSIX	/usr/lib/perl/5.14/POSIX.pm
	0.01	Parallel::Application::MPI	/usr/local/genome/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib/perl/5.14.2/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/usr/local/genome/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/usr/local/genome/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/usr/local/genome/maker/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/usr/local/genome/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/usr/local/genome/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/usr/local/genome/maker/bin/../lib/Process/MpiTiers.pm
	1.23	Scalar::Util	/usr/lib/perl/5.14/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl/5.14/SelectSaver.pm
	UNKNOWN	Shadower	/usr/local/genome/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/usr/local/genome/maker/bin/../lib/SimpleCluster.pm
	1.94	Socket	/usr/lib/perl/5.14/Socket.pm
	UNKNOWN	SpaceBase	/usr/local/genome/maker/bin/../lib/SpaceBase.pm
	2.39	Storable	/usr/local/lib/perl/5.14.2/Storable.pm
	1.07	Symbol	/usr/share/perl/5.14/Symbol.pm
	1.16	Sys::Hostname	/usr/lib/perl/5.14/Sys/Hostname.pm
	0.15	Sys::SigAction	/usr/local/share/perl/5.14.2/Sys/SigAction.pm
	3.00	Term::ANSIColor	/usr/share/perl/5.14/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl/5.14/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl/5.14/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl/5.14/Tie/StdHandle.pm
	1.972101	Time::HiRes	/usr/lib/perl/5.14/Time/HiRes.pm
	1.2000	Time::Local	/usr/share/perl/5.14/Time/Local.pm
	1.59	URI	/usr/share/perl5/URI.pm
	3.31	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/usr/local/genome/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/usr/local/genome/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/usr/local/genome/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/usr/local/genome/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/usr/local/genome/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/usr/local/genome/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::est2genome	/usr/local/genome/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/usr/local/genome/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/usr/local/genome/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/usr/local/genome/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/usr/local/genome/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/usr/local/genome/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::tblastx	/usr/local/genome/maker/bin/../lib/Widget/tblastx.pm
	0.13	XSLoader	/usr/share/perl/5.14/XSLoader.pm
	0.14	attributes	/usr/lib/perl/5.14/attributes.pm
	2.16	base	/usr/share/perl/5.14/base.pm
	1.04	bytes	/usr/share/perl/5.14/bytes.pm
	UNKNOWN	clean	/usr/local/genome/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/usr/local/genome/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/usr/local/genome/maker/bin/../lib/compare.pm
	1.21	constant	/usr/share/perl/5.14/constant.pm
	UNKNOWN	ds_utility	/usr/local/genome/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/usr/local/genome/maker/bin/../lib/exonerate/splice_info.pm
	1.20	feature	/usr/share/perl/5.14/feature.pm
	0.34	forks	/usr/local/lib/perl/5.14.2/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib/perl/5.14.2/forks/Devel/Symdump.pm
	0.34	forks::shared	/usr/local/lib/perl/5.14.2/forks/shared.pm
	0.34	forks::signals	/usr/local/lib/perl/5.14.2/forks/signals.pm
	1.00	integer	/usr/share/perl/5.14/integer.pm
	0.63	lib	/usr/lib/perl/5.14/lib.pm
	1.00	locale	/usr/share/perl/5.14/locale.pm
	UNKNOWN	maker::auto_annotator	/usr/local/genome/maker/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/usr/local/genome/maker/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/usr/local/genome/maker/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/usr/local/genome/maker/bin/../lib/maker/sens_spec.pm
	1.13	overload	/usr/share/perl/5.14/overload.pm
	UNKNOWN	polisher	/usr/local/genome/maker/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/usr/local/genome/maker/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::est	/usr/local/genome/maker/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/usr/local/genome/maker/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	repeat_mask_seq	/usr/local/genome/maker/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/usr/local/genome/maker/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/usr/local/genome/maker/bin/../lib/shadow_AED.pm
	1.05	sigtrap	/usr/share/perl/5.14/sigtrap.pm
	1.04	strict	/usr/share/perl/5.14/strict.pm
	1.77	threads	/usr/local/lib/perl/5.14.2/forks.pm
	1.33	threads::shared	/usr/local/lib/perl/5.14.2/forks/shared.pm
	1.02	vars	/usr/share/perl/5.14/vars.pm
	1.12	warnings	/usr/share/perl/5.14/warnings.pm
	1.02	warnings::register	/usr/share/perl/5.14/warnings/register.pm
STATUS: Parsing control files...
Calling GI::load_control_files at /usr/local/genome/maker/bin/maker line 346.
WARNING: RepBase is not installed for RepeatMasker. This limits
RepeatMasker's functionality and makes the model_org option in the
control files virtually meaningless. MAKER will now reconfigure
for simple repeat masking only.
Calling GI::new_instance_temp at /usr/local/genome/maker/bin/maker line 357.
Calling GI::mount_check at /usr/local/genome/maker/bin/maker line 359.
Calling GI::set_global_temp at /usr/local/genome/maker/bin/maker line 377, <DF> line 2.
STATUS: Processing and indexing input FASTA files...
Calling GI::s_abs_path at /usr/local/genome/maker/bin/maker line 412, <DF> line 2.
Calling GI::s_abs_path at /usr/local/genome/maker/bin/maker line 412, <DF> line 2.
Calling GI::s_abs_path at /usr/local/genome/maker/bin/maker line 412, <DF> line 2.
Calling GI::s_abs_path at /usr/local/genome/maker/bin/maker line 412, <DF> line 2.
Calling GI::s_abs_path at /usr/local/genome/maker/bin/maker line 412, <DF> line 2.
Calling List::Util::shuffle at /usr/local/genome/maker/bin/maker line 422, <DF> line 2.
Calling GI::split_db at /usr/local/genome/maker/bin/maker line 429, <DF> line 2.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/maker line 430.
Calling File::Path::rmtree at /usr/local/genome/maker/bin/maker line 430.
Calling Iterator::Any::new at /usr/local/genome/maker/bin/maker line 430.
Calling Iterator::Any::nextDef at /usr/local/genome/maker/bin/maker line 430.
Calling Iterator::Any::new at /usr/local/genome/maker/bin/maker line 430.
Calling mkdir at /usr/local/genome/maker/bin/maker line 430.
Calling GI::build_fasta_index at /usr/local/genome/maker/bin/maker line 431.
Calling FastaDB::new at /usr/local/genome/maker/bin/maker line 432.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Can't locate package GDBM_File for @AnyDBM_File::ISA at /usr/lib/perl/5.14/DB_File.pm line 287.
Can't locate package NDBM_File for @AnyDBM_File::ISA at /usr/lib/perl/5.14/DB_File.pm line 287.
Can't locate package SDBM_File for @AnyDBM_File::ISA at /usr/lib/perl/5.14/DB_File.pm line 287.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling GI::split_db at /usr/local/genome/maker/bin/maker line 429.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/maker line 430.
Calling File::NFSLock::unlock at /usr/local/genome/maker/bin/maker line 430.
Calling GI::build_fasta_index at /usr/local/genome/maker/bin/maker line 431.
Calling FastaDB::new at /usr/local/genome/maker/bin/maker line 432.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling GI::split_db at /usr/local/genome/maker/bin/maker line 429.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/maker line 430.
Calling File::NFSLock::unlock at /usr/local/genome/maker/bin/maker line 430.
Calling GI::build_fasta_index at /usr/local/genome/maker/bin/maker line 431.
Calling FastaDB::new at /usr/local/genome/maker/bin/maker line 432.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling GI::split_db at /usr/local/genome/maker/bin/maker line 429.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/maker line 430.
Calling File::Path::rmtree at /usr/local/genome/maker/bin/maker line 430.
Calling Iterator::Any::new at /usr/local/genome/maker/bin/maker line 430.
Calling Iterator::Any::nextDef at /usr/local/genome/maker/bin/maker line 430.
Calling Iterator::Any::new at /usr/local/genome/maker/bin/maker line 430.
Calling mkdir at /usr/local/genome/maker/bin/maker line 430.
Calling GI::build_fasta_index at /usr/local/genome/maker/bin/maker line 431.
Calling FastaDB::new at /usr/local/genome/maker/bin/maker line 432.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling GI::create_blastdb at /usr/local/genome/maker/bin/maker line 467.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/maker line 468.
Calling File::NFSLock::unlock at /usr/local/genome/maker/bin/maker line 468.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/maker line 468.
Calling File::NFSLock::unlock at /usr/local/genome/maker/bin/maker line 468.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/maker line 468.
Calling File::Path::rmtree at /usr/local/genome/maker/bin/maker line 468.
Calling Iterator::Any::new at /usr/local/genome/maker/bin/maker line 468.
Calling Iterator::Any::nextDef at /usr/local/genome/maker/bin/maker line 468.
Calling Iterator::Any::new at /usr/local/genome/maker/bin/maker line 468.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/maker line 468.
Calling File::Path::rmtree at /usr/local/genome/maker/bin/maker line 468.
Calling Iterator::Any::new at /usr/local/genome/maker/bin/maker line 468.
Calling Iterator::Any::nextDef at /usr/local/genome/maker/bin/maker line 468.
Calling Iterator::Any::new at /usr/local/genome/maker/bin/maker line 468.
Calling GI::build_fasta_index at /usr/local/genome/maker/bin/maker line 521.
Calling FastaDB::new at /usr/local/genome/maker/bin/maker line 522.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling FastaDB::add_to_global_index at /usr/local/genome/maker/bin/maker line 523.
STATUS: Setting up database for any GFF3 input...
Calling GFFDB::new at /usr/local/genome/maker/bin/maker line 529.
Calling GFFDB::next_build at /usr/local/genome/maker/bin/maker line 531.
Calling ds_utility::new at /usr/local/genome/maker/bin/maker line 535.
A data structure will be created for you at:
/home/rosema1/Projects/maker/dpp_contig.maker.output/dpp_contig_datastore

To access files for individual sequences use the datastore index:
/home/rosema1/Projects/maker/dpp_contig.maker.output/dpp_contig_master_datastore_index.log

Calling Datastore::MD5::new at /usr/local/genome/maker/bin/maker line 536.
Calling Iterator::Fasta::new at /usr/local/genome/maker/bin/maker line 539.
Calling Iterator::Fasta::skip_file at /usr/local/genome/maker/bin/maker line 541.
Calling Iterator::Fasta::step at /usr/local/genome/maker/bin/maker line 543.
STATUS: Now running MAKER...
Calling Datastore::MD5::mkdir at /usr/local/genome/maker/bin/../lib/Process/MpiChunk.pm line 428.
Calling Datastore::MD5::id_to_dir at /usr/local/genome/maker/bin/../lib/Process/MpiChunk.pm line 428.
Calling Datastore::MD5::mkdir at /usr/local/genome/maker/bin/../lib/Process/MpiChunk.pm line 428.
Calling uri_escape at /usr/local/genome/maker/bin/../lib/Process/MpiChunk.pm line 428.
Calling File::Path::mkpath at /usr/local/genome/maker/bin/../lib/Process/MpiChunk.pm line 428.



--Next Contig--

Processing run.log file...
#---------------------------------------------------------------------
The contig has already been processed!!
Maker will now skip to the next contig.
Run maker with the -f flag to force Maker to recompute all contig data.
SeqID: contig-dpp-500-500
Length: 32156
#---------------------------------------------------------------------




Maker is now finished!!!

-------------- next part --------------
#-----BLAST and Exonerate Statistics Thresholds
blast_type=ncbi+ #set to 'ncbi+', 'ncbi' or 'wublast'

pcov_blastn=0.8 #Blastn Percent Coverage Threhold EST-Genome Alignments
pid_blastn=0.85 #Blastn Percent Identity Threshold EST-Genome Aligments
eval_blastn=1e-10 #Blastn eval cutoff
bit_blastn=40 #Blastn bit cutoff
depth_blastn=0 #Blastn depth cutoff (0 to disable cutoff)

pcov_blastx=0.5 #Blastx Percent Coverage Threhold Protein-Genome Alignments
pid_blastx=0.4 #Blastx Percent Identity Threshold Protein-Genome Aligments
eval_blastx=1e-06 #Blastx eval cutoff
bit_blastx=30 #Blastx bit cutoff
depth_blastx=0 #Blastx depth cutoff (0 to disable cutoff)

pcov_tblastx=0.8 #tBlastx Percent Coverage Threhold alt-EST-Genome Alignments
pid_tblastx=0.85 #tBlastx Percent Identity Threshold alt-EST-Genome Aligments
eval_tblastx=1e-10 #tBlastx eval cutoff
bit_tblastx=40 #tBlastx bit cutoff
depth_tblastx=0 #tBlastx depth cutoff (0 to disable cutoff)

pcov_rm_blastx=0.5 #Blastx Percent Coverage Threhold For Transposable Element Masking
pid_rm_blastx=0.4 #Blastx Percent Identity Threshold For Transposbale Element Masking
eval_rm_blastx=1e-06 #Blastx eval cutoff for transposable element masking
bit_rm_blastx=30 #Blastx bit cutoff for transposable element masking

ep_score_limit=20 #Exonerate protein percent of maximal score threshold
en_score_limit=20 #Exonerate nucleotide percent of maximal score threshold
-------------- next part --------------
#-----Location of Executables Used by MAKER/EVALUATOR
makeblastdb=/usr/local/genome/rmblast/bin/makeblastdb #location of NCBI+ makeblastdb executable
blastn=/usr/local/genome/rmblast/bin/blastn #location of NCBI+ blastn executable
blastx=/usr/local/genome/rmblast/bin/blastx #location of NCBI+ blastx executable
tblastx=/usr/local/genome/rmblast/bin/tblastx #location of NCBI+ tblastx executable
formatdb=/usr/bin/formatdb #location of NCBI formatdb executable
blastall=/usr/bin/blastall #location of NCBI blastall executable
xdformat= #location of WUBLAST xdformat executable
blasta= #location of WUBLAST blasta executable
RepeatMasker=/usr/local/genome/RepeatMasker/RepeatMasker #location of RepeatMasker executable
exonerate=/usr/local/genome/exonerate-2.2.0-x86_64/bin/exonerate #location of exonerate executable

#-----Ab-initio Gene Prediction Algorithms
snap=/usr/local/genome/snap/snap #location of snap executable
gmhmme3= #location of eukaryotic genemark executable
gmhmmp= #location of prokaryotic genemark executable
augustus= #location of augustus executable
fgenesh= #location of fgenesh executable

#-----Other Algorithms
probuild= #location of probuild executable (required for genemark)
-------------- next part --------------
#-----Genome (these are always required)
genome=dpp_contig.fasta #genome sequence (fasta file or fasta embeded in GFF3 file)
organism_type=eukaryotic #eukaryotic or prokaryotic. Default is eukaryotic

#-----Re-annotation Using MAKER Derived GFF3
maker_gff= #MAKER derived GFF3 file
est_pass=0 #use ESTs in maker_gff: 1 = yes, 0 = no
altest_pass=0 #use alternate organism ESTs in maker_gff: 1 = yes, 0 = no
protein_pass=0 #use protein alignments in maker_gff: 1 = yes, 0 = no
rm_pass=0 #use repeats in maker_gff: 1 = yes, 0 = no
model_pass=0 #use gene models in maker_gff: 1 = yes, 0 = no
pred_pass=0 #use ab-initio predictions in maker_gff: 1 = yes, 0 = no
other_pass=0 #passthrough anyything else in maker_gff: 1 = yes, 0 = no

#-----EST Evidence (for best results provide a file for at least one)
est=dpp_est.fasta #set of ESTs or assembled mRNA-seq in fasta format
altest= #EST/cDNA sequence file in fasta format from an alternate organism
est_gff= #aligned ESTs or mRNA-seq from an external GFF3 file
altest_gff= #aligned ESTs from a closly relate species in GFF3 format

#-----Protein Homology Evidence (for best results provide a file for at least one)
protein=dpp_protein.fasta  #protein sequence file in fasta format (i.e. from mutiple oransisms)
protein_gff=  #aligned protein homology evidence from an external GFF3 file

#-----Repeat Masking (leave values blank to skip repeat masking)
model_org=all #select a model organism for RepBase masking in RepeatMasker
rmlib= #provide an organism specific repeat library in fasta format for RepeatMasker
repeat_protein=/usr/local/genome/maker/data/te_proteins.fasta #provide a fasta file of transposable element proteins for RepeatRunner
rm_gff= #pre-identified repeat elements from an external GFF3 file
prok_rm=0 #forces MAKER to repeatmask prokaryotes (no reason to change this), 1 = yes, 0 = no
softmask=1 #use soft-masking rather than hard-masking in BLAST (i.e. seg and dust filtering)

#-----Gene Prediction
snaphmm= #SNAP HMM file
gmhmm= #GeneMark HMM file
augustus_species= #Augustus gene prediction species model
fgenesh_par_file= #FGENESH parameter file
pred_gff= #ab-initio predictions from an external GFF3 file
model_gff= #annotated gene models from an external GFF3 file (annotation pass-through)
est2genome=1 #infer gene predictions directly from ESTs, 1 = yes, 0 = no
protein2genome=0 #infer predictions from protein homology, 1 = yes, 0 = no
unmask=0 #also run ab-initio prediction programs on unmasked sequence, 1 = yes, 0 = no

#-----Other Annotation Feature Types (features MAKER doesn't recognize)
other_gff= #extra features to pass-through to final MAKER generated GFF3 file

#-----External Application Behavior Options
alt_peptide=C #amino acid used to replace non-standard amino acids in BLAST databases
cpus=1 #max number of cpus to use in BLAST and RepeatMasker (not for MPI, leave 1 when using MPI)

#-----MAKER Behavior Options
max_dna_len=100000 #length for dividing up contigs into chunks (increases/decreases memory usage)
min_contig=1 #skip genome contigs below this length (under 10kb are often useless)

pred_flank=200 #flank for extending evidence clusters sent to gene predictors
pred_stats=0 #report AED and QI statistics for all predictions as well as models
AED_threshold=1 #Maximum Annotation Edit Distance allowed (bound by 0 and 1)
min_protein=0 #require at least this many amino acids in predicted proteins
alt_splice=0 #Take extra steps to try and find alternative splicing, 1 = yes, 0 = no
always_complete=0 #extra steps to force start and stop codons, 1 = yes, 0 = no
map_forward=0 #map names and attributes forward from old GFF3 genes, 1 = yes, 0 = no
keep_preds=0 #Concordance threshold to add unsupported gene prediction (bound by 0 and 1)

split_hit=10000 #length for the splitting of hits (expected max intron size for evidence alignments)
single_exon=0 #consider single exon EST evidence when generating annotations, 1 = yes, 0 = no
single_length=250 #min length required for single exon ESTs if 'single_exon is enabled'
correct_est_fusion=0 #limits use of ESTs in annotation to avoid fusion genes

tries=2 #number of times to try a contig if there is a failure for some reason
clean_try=0 #remove all data from previous run before retrying, 1 = yes, 0 = no
clean_up=0 #removes theVoid directory with individual analysis files, 1 = yes, 0 = no
TMP= #specify a directory other than the system default temporary directory for temporary files

From carsonhh at gmail.com  Sun Dec  9 12:16:53 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Sun, 09 Dec 2012 14:16:53 -0500
Subject: [maker-devel] FW: maker error
In-Reply-To: <F0C46C4D691E2047A95E0293D5660AD00BC1359B99@USETCMSXMB03.NAFTA.SYNGENTA.ORG>
Message-ID: <CCEA4C91.16F67%carsonhh@gmail.com>

The error is most likely one related to Berkley DB on some systems that
has been fixed in the devel version of maker.  I've updated the maker
download at yandell-lab.org to version 2.27, so it also has the fix
integrated.

Thanks,
Carson




On 12-12-08 11:06 AM, "mark.rose at syngenta.com" <mark.rose at syngenta.com>
wrote:

>Hi
>
>I just installed maker and am trying to run it with the sample data but
>get the following error:
>
>$ maker
>STATUS: Parsing control files...
>WARNING: RepBase is not installed for RepeatMasker. This limits
>RepeatMasker's functionality and makes the model_org option in the
>control files virtually meaningless. MAKER will now reconfigure for
>simple repeat masking only.
>STATUS: Processing and indexing input FASTA files...
>Segmentation fault (core dumped)
>
>I've attached the config files and the output of $maker --debug
>
>Thanks for your help
>
>Mark
>
>
>
>
>This message may contain confidential information. If you are not the
>designated recipient, please notify the sender immediately, and delete
>the original and any copies. Any use of the message by you is prohibited.
>_______________________________________________
>maker-devel mailing list
>maker-devel at box290.bluehost.com
>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org





From carsonhh at gmail.com  Sun Dec  9 12:33:22 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Sun, 09 Dec 2012 14:33:22 -0500
Subject: [maker-devel] MAKER download updated to 2.27
Message-ID: <CCEA51B2.16F91%carsonhh@gmail.com>

MAKER has now been updated to version 2.27-beta on the yandell-lab.org
download site


Changes
* Fix parsing failure that rarely happen in some exonerate results
* Faster performance on NFS
* Workaround for filesystems that don't support hard links, and new command
line options to completely turn off file locking during runs
* Support for more indexing types beyond Berkley DB
* Fix for seg fault during indexing on some systems
* Better support for more MPI flavors (OpenMPi and MVAPICH2)
* Non-standard nucleotides now allowed although not recommended because they
may cause compatibility issues when you try and use MAKER results with other
programs that don't support those nucleotides.
* Other incremental bug fixes and performance enhancements.

Thanks,
Carson




-------------- next part --------------
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From parulk at caltech.edu  Mon Dec 10 20:28:24 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Mon, 10 Dec 2012 19:28:24 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCE7FF16.16F0A%carsonhh@gmail.com>
References: <CCE7FF16.16F0A%carsonhh@gmail.com>
Message-ID: <3576.131.215.15.234.1355196504.squirrel@webmail.caltech.edu>

Dear Carson, Thanks a lot for detailed explanation and all the help with
running and understanding maker2.


> Yes.  Lamprey is not a good match for sea urchin.  When training Augusuts
> you can sometimes use other genomes as starting points and let Augustus
> then modify that species to match the models you provided, which can be
> better than de novo training under certain circumstances. But given sea
> urchin's evolutionary distance from all the other species bundled with
> augustus, its probably not a good starting point.  So protein2genome
> derived models and cegma based training are probably your best options.
>
> --Carson
>
>
> On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>
>>Sorry for not checking this before, just to answer my own question I just
>>found after reading augustus documentation that autoAugTrain.pl should
>>work for generating training dataset for Augustus from using the
>>gene-model hints from first pass run of maker and using
>>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script to
>>generate training.gb
>>
>>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>>
>>I believe should work better than using lamprey to train augustus.
>>
>>Thanks and regards,
>>Parul Kudtarkar
>>
>>> Dear Carson,
>>>
>>> Thanks for detailed explanation and help. Now we know the exact
>>>parameters
>>> that should help us with generating good gene-model.
>>>
>>> The genome for which we are working on gene predictions is
>>> Echinoderm(sea-urchin). lamprey was the closest organism for training
>>> augustus that I could find. A quick question for training augustus,
>>>there
>>> is augustus_species option how would you go from training data
>>> generated
>>> by zff2augustus_gbk.pl > train.gb as specified here
>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>>> generating the species folder that can be specified to augustus_species
>>> option.
>>>
>>> The average expected gene-length in our case is ~15kb.
>>> We also have a good repeat library for our genome.
>>>
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>
>>>> For step 2 and 3, use lamprey rather than human in augustus.  For some
>>>> reason the current version of augustus doesn't diplay it as an option
>>>> for
>>>> the species help menu (so I didn't see it), but it's there in
>>>> ?/augustus/config/species/lamprey
>>>>
>>>> For any additional training, make copies into
>>>> ?/augustus/config/species/lamprey2 and
>>>> ?/augustus/config/species/lamprey3
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>
>>>> From:  Carson Holt <carsonhh at gmail.com>
>>>> Date:  Friday, 7 December, 2012 10:22 AM
>>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>>> "maker-devel at yandell-lab.org"
>>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>>> Subject:  Re: [maker-devel] AED score
>>>>
>>>> Just to add to Daniels comments.
>>>>
>>>> Things to change in step 1:
>>>>> protein= <just try and add more protein evidence in general>
>>>>> est2genome=0
>>>>> protein2genome=1
>>>>> split_hit=20000
>>>>> min_contig=50000
>>>>
>>>> Reasoning:
>>>>> Your ESTs are very short especially if this is a lamprey species
>>>>> which
>>>>> have
>>>>> very long introns and really short exons.  In lamprey (i.e.
>>>>> Petromyzon
>>>>> marinus), genes tend to be very long (remember gene lengths include
>>>>> introns
>>>>> and UTR and is not just the size of the coding sequence), so contigs
>>>>> shorter
>>>>> than 50kb are useless for training as you are unlikely to get nice
>>>>> complete
>>>>> gene models on those.  Also lampreys have very long introns, so you
>>>>> have
>>>>> to
>>>>> allow for bigger introns in alignments (split_hit parameter).
>>>>> Finally
>>>>> add as
>>>>> much protein evidence from as many sources as possible.  Your maker
>>>>> training
>>>>> run will take a long time as proteins take forever to align, but
>>>>> because
>>>>> of
>>>>> the evolutionary distance of lamprey from everything else and the
>>>>>short
>>>>> exon
>>>>> structure of its genome, very little aligns directly to its genome
>>>>>from
>>>>> other
>>>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>>>> species
>>>>> because of what you said about the  augustus species file you are
>>>>> using.
>>>>> Really the only thing closely related to lampreys unfortunately are
>>>>> other
>>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>>>>> lamprey
>>>>> (while they branch closely together on the tree of life, there are
>>>>> too
>>>>> many
>>>>> years since the last common ancestor).  So while they may have
>>>>> similar
>>>>> issues
>>>>> related to annotation (long introns and short exons etc.) they will
>>>>>not
>>>>> really
>>>>> match that well for the gene predictor or even protein alignments.
>>>>
>>>> Additional note:
>>>>> I have training files for the lamprey species Petromyzon marinus for
>>>>> both
>>>>> Augustus and SNAP that I could share with you in a few week, when the
>>>>> genome
>>>>> publication is is released.  But before that happens, new gene models
>>>>> will be
>>>>> available  through the UCSC browser (hopefully within a couple of
>>>>> weeks), and
>>>>> gene models are already available through ENSEMBL.  Get those protein
>>>>> files
>>>>> for training, it may be a big help for you.  If you want early access
>>>>> to
>>>>> the
>>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>>request
>>>>> it
>>>>> from Weiming Li at Michigan State University (the head of that genome
>>>>> project).
>>>>>
>>>>
>>>>
>>>> Things to change in step 2:
>>>>> Optimally you would be doing de novo training using mRNAseq results,
>>>>> but
>>>>> with
>>>>> on;ly sparse protein alignments and such a fragmented assembly, you
>>>>>are
>>>>> probably better off just trying to adapt the human HMM files.  They
>>>>> won't
>>>>> match that well, but you probably won't have the evidence for De Novo
>>>>> training.  First make a copy of the augustus human species directory
>>>>> and
>>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>>>> retraining
>>>>> augustus using your new models.  You will have to edit multiple files
>>>>> in
>>>>> the
>>>>> directory after you copy it so that they no longer say human or homo
>>>>> sapiens
>>>>> internally or in the file name.  Use maker2zff to generate the
>>>>>filtered
>>>>> ZFF
>>>>> file for training SNAP, but don't train SNAP.  Rather use the
>>>>> training
>>>>> file to
>>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>>
>>>>> MAKE a backup of the step 1 maker output directory and run step 2 in
>>>>> the
>>>>> old
>>>>> step 1 directory (this allows you to change the parameters and reuse
>>>>> files
>>>>> form step 1 so you don't have to recalculate all the protein and EST
>>>>> alignments).  So control files for step 2 are identical to step 1
>>>>> except
>>>>> for
>>>>> these parameters.
>>>>>
>>>>> protein2genome=0
>>>>> augustus_species=lamprey
>>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>>
>>>>> Don't both training SNAP here as you probably won't have enough data
>>>>> and
>>>>> you
>>>>> assembly is too fragmented for it to work well, so just stick to
>>>>> augustus.
>>>>> Try SNAP if you want just to see how well it works.  Manually open up
>>>>> the
>>>>> largest contigs in a viewer to look at the models produced from the
>>>>> MAKER run
>>>>> to see if they look reasonable (this will also help you decide
>>>>> whether
>>>>> to keep
>>>>> SNAP).
>>>>>
>>>>
>>>> Things to change in step 3:
>>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>>>>> make
>>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>>> ?/augustus/config/species/lamprey2 (editing all the files and names
>>>>> as
>>>>> you did
>>>>> in step 2). This way you don't loose that training data if you decide
>>>>> to
>>>>> step
>>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>>
>>>>> augustus_species=lamprey2
>>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>>
>>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>>> (This
>>>>> is
>>>>> for file reuse, so the step will run fast).  This must be the exact
>>>>> same
>>>>> step
>>>>> directory as step 2 for the reuse trick to work.
>>>>>
>>>>> Manually review the models and if you are satisfied move to step 4.
>>>>> Also note
>>>>> that most parameters including the protein, EST, and repeats should
>>>>>not
>>>>> change
>>>>> from step1-step3, and should not be removed for step 4 either, you
>>>>> can
>>>>> add
>>>>> more evidence, but don't remove evidence (like the repeats).
>>>>>
>>>>>
>>>> Things to change in step 4:
>>>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>>>> step
>>>>> 3
>>>>> directory to get the smaller contigs annotated.  This should be your
>>>>> final
>>>>> step, although you can try altering other parameters or adding more
>>>>> evidence
>>>>> sources here etc.
>>>>>
>>>>>
>>>> For other things to keep in mind, you should consider taking extra
>>>> time
>>>> to
>>>> build a comprehensive library of repeats for your species, I know that
>>>> Petromyzon marinus was virtually unannotatable until we had a very
>>>> deep
>>>> repeat library built for it.  Any repeat library should be used in all
>>>> steps.  Also for lamprey, you will expect between 20,000-30,000 genes
>>>> both
>>>> because of your assemblies fragmentation and because of some ancestral
>>>> genome duplication.  Also be aware that lampreys appear to undergo
>>>> programmed genome loss in somatic tissues, so any gene count you get
>>>> is
>>>> only
>>>> going to represent a maximum of 75-80% of all genes unless the
>>>> assembly
>>>> is
>>>> derived from germline tissue.
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>>
>>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>
>>>>> Hi Parul,
>>>>>
>>>>> In step one, if protein2genome isn't turned on, then the protein
>>>>> alignments
>>>>> wont be used to generate gene models. Carson said before to use
>>>>> protein2genome
>>>>> to generate gene models for your trainings set, but you should know
>>>>> that
>>>>> those
>>>>> data aren't being used right now.
>>>>>
>>>>> In step 2, you can include the est and protein evidence that you used
>>>>> in
>>>>> step
>>>>> one, and the ab-initio predictors will takes those data as hints to
>>>>> guide
>>>>> their predictions. Also, are you reannotating human here? I'm just
>>>>> wondering
>>>>> why the snap file is called Pult, but the augustus species model is
>>>>> human.
>>>>> Also, I think you should include the same masking files from step 1,
>>>>> otherwise
>>>>> the ab-initio predictors will be predicting on the unmasked sequence
>>>>> which
>>>>> will give you many spurious predictions.
>>>>>
>>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>>control
>>>>> file
>>>>> you sent for step 3 will just pass-through all of the data from
>>>>>before.
>>>>>
>>>>> In step 4, I think what you'll get is pretty close to what you
>>>>> already
>>>>> had in
>>>>> step 3. The gene models from step 3 are already based on the est and
>>>>> protein
>>>>> data from step 1, so without giving any different evidence or
>>>>>ab-initio
>>>>> predictors, I think that you will just get the same gene models that
>>>>> you
>>>>> got
>>>>> from step 3. Those gene models are what you should be using to train
>>>>> snap.
>>>>> Also, is this the same genome as in the other steps? The genome file
>>>>> here is
>>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>>
>>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>>create
>>>>> models. If you don't give any evidence (EST or protein) maker will
>>>>> not
>>>>> annotate any gene models. You have also changed the augustus species
>>>>> model in
>>>>> this step, but I don't know what you've gained by going from one
>>>>> species
>>>>> to
>>>>> another. You should be training augustus with the gene models and
>>>>> then
>>>>> creating a new species model in augustus. As I understand it, the
>>>>> filter
>>>>> only
>>>>> operates on gene models, not ab-initio predictions or alignments, so
>>>>>it
>>>>> probably isn't doing anything the way you have it set.
>>>>>
>>>>> Step 6. I think step 5 and 6 should be combined. I don't know what
>>>>> you
>>>>> mean by
>>>>> boot-strapping here too.
>>>>>
>>>>> Hopefully that clears up some of the confusion with how maker works.
>>>>> Carson
>>>>> will probably have a lot of suggestions too.
>>>>>
>>>>> Thanks,
>>>>> Daniel
>>>>>
>>>>> Daniel Ence
>>>>> Graduate Student
>>>>> Eccles Institute of Human Genetics
>>>>> University of Utah
>>>>> 15 North 2030 East, Room 2100
>>>>> Salt Lake City, UT 84112-5330
>>>>> ________________________________________
>>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>>> To: carsonhh at gmail.com
>>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>>> Subject: Re: [maker-devel] AED score
>>>>>
>>>>> Hi Carson,
>>>>>
>>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>>> 30,000
>>>>> genes.
>>>>> Here are the step
>>>>> Step1. EST and proteins are used to predict gene-models. the
>>>>> resulting
>>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>>> turned
>>>>> ON
>>>>> Step2. Augustus and SNAP is used to predict genes.
>>>>> Step3. The results are re-annoated(boot-strap)
>>>>> Step4. EST and proteins are used to predict gene-models. The gff file
>>>>> from
>>>>> step3. is used as model_gff. The resulting file is used as training
>>>>> data-set for SNAP in step2
>>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to
>>>>>0.5
>>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5
>>>>> and
>>>>> contig_size to 10kb
>>>>>
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>
>>>>> I have attached the configuration file for each step.
>>>>>>  Your output has no genes.  They've all been filtered out.  The gene
>>>>> predictions are left for reference purposes, but there are no gene
>>>>> models
>>>>>>  in the file.  You need to look at the type columns in the GFF3 file
>>>>>> -->
>>>>> match/match_part features are evidence and reference data but not
>>>>> models.
>>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>>>>> just
>>>>> want gene models in your file you can use the gff3_merge script with
>>>>> the
>>>>> -g option, and it will only print out the gene models.
>>>>>>  I think you may be misinterpreting what is happening at different
>>>>>> steps,
>>>>> as well as how to read the result files.  Could you give me a
>>>>> detailed
>>>>> explanation of what you expect to get back together with your control
>>>>> files and I can walk you through the configuration, and indicate what
>>>>> to
>>>>> expect.  Also what was the report like from CEGMA. Could you include
>>>>> the
>>>>> report file that shows how complete your genome is and how fragmented
>>>>> it
>>>>> is?
>>>>>>  Thanks,
>>>>>>  Carson
>>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Dear Carson,
>>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>>> Though for previous step(ab-intio gene predictions keep_preds was
>>>>>>>set
>>>>>>> to
>>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>>> Scaffold1_out.gff.
>>>>>>> Please advice.
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>>  You should always get all predictions, but should only get models
>>>>> (match/match_part) with AED scores less than 0.5.  You should never
>>>>>get
>>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>>>> keep_preds set.
>>>>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>>>>> your
>>>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>>> case,
>>>>>>>>  just set it to 0.  If the second one in the case, could you send
>>>>>>>>me
>>>>> example GFF3?
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>>> Dear Carson,
>>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>>> short
>>>>>>>>>  ESTs.
>>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>>> prediction(used as training dataset)and abinitio
>>>>>>>>> gene-prediction).
>>>>> Here
>>>>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>>>>  however
>>>>>>>>>  I
>>>>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>>>>  resulting
>>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>>>>  initial
>>>>>>>>> gff3 file.
>>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>>>  eukaryotic
>>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>>>> file
>>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 =
>>>>>>>>> yes,
>>>>>>>>> 0
>>>>>>>>> =
>>>>> no
>>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0
>>>>>>>>> =
>>>>>>>>> no
>>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>>>>  no
>>>>>>>>> #-----MAKER Behavior Options
>>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed
>>>>>>>>> (bound
>>>>>>>>> by
>>>>> 0
>>>>>>>>> and 1)
>>>>>>>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>>>> partial
>>>>>>>>>> at
>>>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>>>> those
>>>>> by
>>>>>>>>>>  using maker's est_gff option to pass in results from cufflinks
>>>>>>>>>>or
>>>>>>>>>> trinity.
>>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
>>>>> size,
>>>>>>>>>> just
>>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>>> maker_opts.ctl file.
>>>>>>>>>>  Thanks,
>>>>>>>>>>  Carson
>>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>>with
>>>>> N50
>>>>>>>>>>>  of
>>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>>> reason
>>>>>>>>>>>  when
>>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>>> predicted
>>>>> despite the model_gff file has few genes with scores less than 0.75?
>>>>> Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>>> contig.
>>>>>>>>>>> First
>>>>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>>>>> also
>>>>>>>>>>> have
>>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>>> getting
>>>>> many
>>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>>> models
>>>>> that
>>>>>>>>>>> are
>>>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>>>> piece
>>>>>>>>>>> of
>>>>>>>>>>> a
>>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>>reason
>>>>>>>>>>>  unless
>>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>>>>  protein
>>>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>>>> need
>>>>> to
>>>>>>>>>>> add
>>>>>>>>>>>  more proteins from a couple of related species, and you might
>>>>> consider
>>>>>>>>>>> using protein2genome rather than est2genome as a predictor if
>>>>>>>>>>>you
>>>>> are
>>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>>> produced
>>>>> models
>>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>>with
>>>>> the
>>>>>>>>>>> AED_threshold with such limited protein support does create an
>>>>> artificial
>>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>>  How many contigs do you have in total and what is the N50
>>>>>>>>>>> value
>>>>> for
>>>>>>>>>>> the
>>>>>>>>>>> assembly? If you have a large number of very short contigs, you
>>>>>>>>>>> will
>>>>>>>>>>>  get
>>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>>> contigs
>>>>>>>>>>>  and
>>>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>>>> just
>>>>> assembled in a slightly different way (so you can get bits and
>>>>> pieces
>>>>>>>>>>>  of
>>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>>  confounding
>>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>>> would
>>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>>  completeness
>>>>>>>>>>> as
>>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>>> statistics
>>>>>>>>>>> produced
>>>>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>>>>> those
>>>>>>>>>>>  that
>>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to
>>>>>>>>>>> be
>>>>> shorter
>>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>>CEGMA
>>>>> gives
>>>>>>>>>>>  a
>>>>>>>>>>> high partial percentage and a low complete percentage, then
>>>>>>>>>>> this
>>>>>>>>>>>  pattern
>>>>>>>>>>> can be expected to be even more exaggerated for other genes in
>>>>>>>>>>> the
>>>>> genome.
>>>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>>>> well
>>>>> then
>>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>>genomes
>>>>> end
>>>>>>>>>>>  up
>>>>>>>>>>> having extremely fragmented assemblies (on the order of 100,000
>>>>> contigs),
>>>>>>>>>>>  and if they are distantly related to other annotated species
>>>>>>>>>>>few
>>>>>>>>>>> proteins
>>>>>>>>>>>  may align to the contigs because the introns in the alignments
>>>>> tend
>>>>>>>>>>>  to
>>>>>>>>>>> be
>>>>>>>>>>>  so long and exons so short that it pushes down the
>>>>>>>>>>> significance
>>>>> scores
>>>>>>>>>>> too
>>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if
>>>>>>>>>>> not
>>>>> only
>>>>>>>>>>>  way
>>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>>  Thanks,
>>>>>>>>>>>  Carson
>>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>score.
>>>>> The
>>>>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>>>>> file
>>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>>  least
>>>>>>>>>>>  5
>>>>>>>>>>> genes with AED score less than 0.75. However there were no
>>>>>>>>>>> genes
>>>>>>>>>>>  predicted
>>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have
>>>>>>>>>>> also
>>>>>>>>>>> attached
>>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>> just
>>>>>>>>>>> want
>>>>>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>>>>>> maker.
>>>>>>>>>>> On
>>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>>> training
>>>>>>>>>>>  gene
>>>>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>>>>  dataset
>>>>>>>>>>> for
>>>>>>>>>>>  SNAP training.  There are a number of filters available. Just
>>>>> call
>>>>>>>>>>>  the
>>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>>  Thanks,
>>>>>>>>>>>  Carson
>>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>> Hi Parul,
>>>>>>>>>>> I think the way you described (with the maker_opts.ctl file) is
>>>>> how
>>>>>>>>>>> you
>>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>>> Daniel
>>>>>>>>>>> Daniel Ence
>>>>>>>>>>> Graduate Student
>>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>>> University of Utah
>>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>>> ________________________________________
>>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>  Kudtarkar
>>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>>> Also, are there any other parameters that are required when
>>>>> filtering
>>>>>>>>>>> based on AED score?
>>>>>>>>>>>  Hello Carson,
>>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>>> models
>>>>>>>>>>> at
>>>>>>>>>>> specific AED score.
>>>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>>>> to
>>>>>>>>>>> parameters
>>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>> genes
>>>>>>>>>>> gff3
>>>>>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>>>> 1
>>>>>>>>>>>  is
>>>>>>>>>>> worst
>>>>>>>>>>>  as
>>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>>> parameter
>>>>>>>>>>> to
>>>>>>>>>>>  require better matching to the evidence by setting it closer
>>>>> to
>>>>>>>>>>> 0.
>>>>>>>>>>> You
>>>>>>>>>>>  can
>>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>>> your
>>>>>>>>>>> calls
>>>>>>>>>>> may
>>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>>  --Carson
>>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>> Dear Maker community,
>>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>>  based
>>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>>Augustus
>>>>> predictions, followed by boot-strapping. I would typically expect
>>>>> 20-30K
>>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>>  indicating
>>>>>>>>>>>  too
>>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>>> predication/script to retain predictions with AED score 1 and
>>>>>>>>>>> if
>>>>>>>>>>> yes
>>>>>>>>>>> how
>>>>>>>>>>> to go about this?
>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>> -l
>>>>>>>>>>> ab
>>>>>>>>>>> .o
>>>>>>>>>>> rg
>>>>>>>>>>>  --
>>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>>a
>>>>> b.
>>>>>>>>>>> or
>>>>>>>>>>> g
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>>a
>>>>> b.
>>>>>>>>>>> or
>>>>>>>>>>> g
>>>>>>>>>>>  _______________________________________________
>>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>>>
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>>ab
>>>>> .o
>>>>>>>>>>> rg
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>
>>>>>
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>>>>
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>
>>
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From carsonhh at gmail.com  Tue Dec 11 07:21:44 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Tue, 11 Dec 2012 09:21:44 -0500
Subject: [maker-devel] AED score
In-Reply-To: <3576.131.215.15.234.1355196504.squirrel@webmail.caltech.edu>
Message-ID: <CCECAB6F.16FD3%carsonhh@gmail.com>

Thanks Parul.  If you need any more help, just let us know.

--Carson



On 12-12-10 10:28 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Carson, Thanks a lot for detailed explanation and all the help with
>running and understanding maker2.
>
>
>> Yes.  Lamprey is not a good match for sea urchin.  When training
>>Augusuts
>> you can sometimes use other genomes as starting points and let Augustus
>> then modify that species to match the models you provided, which can be
>> better than de novo training under certain circumstances. But given sea
>> urchin's evolutionary distance from all the other species bundled with
>> augustus, its probably not a good starting point.  So protein2genome
>> derived models and cegma based training are probably your best options.
>>
>> --Carson
>>
>>
>> On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>
>>>Sorry for not checking this before, just to answer my own question I
>>>just
>>>found after reading augustus documentation that autoAugTrain.pl should
>>>work for generating training dataset for Augustus from using the
>>>gene-model hints from first pass run of maker and using
>>>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script to
>>>generate training.gb
>>>
>>>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>>>
>>>I believe should work better than using lamprey to train augustus.
>>>
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>
>>>> Dear Carson,
>>>>
>>>> Thanks for detailed explanation and help. Now we know the exact
>>>>parameters
>>>> that should help us with generating good gene-model.
>>>>
>>>> The genome for which we are working on gene predictions is
>>>> Echinoderm(sea-urchin). lamprey was the closest organism for training
>>>> augustus that I could find. A quick question for training augustus,
>>>>there
>>>> is augustus_species option how would you go from training data
>>>> generated
>>>> by zff2augustus_gbk.pl > train.gb as specified here
>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>>>> generating the species folder that can be specified to
>>>>augustus_species
>>>> option.
>>>>
>>>> The average expected gene-length in our case is ~15kb.
>>>> We also have a good repeat library for our genome.
>>>>
>>>> Thanks and regards,
>>>> Parul Kudtarkar
>>>>
>>>>> For step 2 and 3, use lamprey rather than human in augustus.  For
>>>>>some
>>>>> reason the current version of augustus doesn't diplay it as an option
>>>>> for
>>>>> the species help menu (so I didn't see it), but it's there in
>>>>> ?/augustus/config/species/lamprey
>>>>>
>>>>> For any additional training, make copies into
>>>>> ?/augustus/config/species/lamprey2 and
>>>>> ?/augustus/config/species/lamprey3
>>>>>
>>>>> Thanks,
>>>>> Carson
>>>>>
>>>>>
>>>>>
>>>>> From:  Carson Holt <carsonhh at gmail.com>
>>>>> Date:  Friday, 7 December, 2012 10:22 AM
>>>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>>>> "maker-devel at yandell-lab.org"
>>>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>>>> Subject:  Re: [maker-devel] AED score
>>>>>
>>>>> Just to add to Daniels comments.
>>>>>
>>>>> Things to change in step 1:
>>>>>> protein= <just try and add more protein evidence in general>
>>>>>> est2genome=0
>>>>>> protein2genome=1
>>>>>> split_hit=20000
>>>>>> min_contig=50000
>>>>>
>>>>> Reasoning:
>>>>>> Your ESTs are very short especially if this is a lamprey species
>>>>>> which
>>>>>> have
>>>>>> very long introns and really short exons.  In lamprey (i.e.
>>>>>> Petromyzon
>>>>>> marinus), genes tend to be very long (remember gene lengths include
>>>>>> introns
>>>>>> and UTR and is not just the size of the coding sequence), so contigs
>>>>>> shorter
>>>>>> than 50kb are useless for training as you are unlikely to get nice
>>>>>> complete
>>>>>> gene models on those.  Also lampreys have very long introns, so you
>>>>>> have
>>>>>> to
>>>>>> allow for bigger introns in alignments (split_hit parameter).
>>>>>> Finally
>>>>>> add as
>>>>>> much protein evidence from as many sources as possible.  Your maker
>>>>>> training
>>>>>> run will take a long time as proteins take forever to align, but
>>>>>> because
>>>>>> of
>>>>>> the evolutionary distance of lamprey from everything else and the
>>>>>>short
>>>>>> exon
>>>>>> structure of its genome, very little aligns directly to its genome
>>>>>>from
>>>>>> other
>>>>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>>>>> species
>>>>>> because of what you said about the  augustus species file you are
>>>>>> using.
>>>>>> Really the only thing closely related to lampreys unfortunately are
>>>>>> other
>>>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>>>>>> lamprey
>>>>>> (while they branch closely together on the tree of life, there are
>>>>>> too
>>>>>> many
>>>>>> years since the last common ancestor).  So while they may have
>>>>>> similar
>>>>>> issues
>>>>>> related to annotation (long introns and short exons etc.) they will
>>>>>>not
>>>>>> really
>>>>>> match that well for the gene predictor or even protein alignments.
>>>>>
>>>>> Additional note:
>>>>>> I have training files for the lamprey species Petromyzon marinus for
>>>>>> both
>>>>>> Augustus and SNAP that I could share with you in a few week, when
>>>>>>the
>>>>>> genome
>>>>>> publication is is released.  But before that happens, new gene
>>>>>>models
>>>>>> will be
>>>>>> available  through the UCSC browser (hopefully within a couple of
>>>>>> weeks), and
>>>>>> gene models are already available through ENSEMBL.  Get those
>>>>>>protein
>>>>>> files
>>>>>> for training, it may be a big help for you.  If you want early
>>>>>>access
>>>>>> to
>>>>>> the
>>>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>>>request
>>>>>> it
>>>>>> from Weiming Li at Michigan State University (the head of that
>>>>>>genome
>>>>>> project).
>>>>>>
>>>>>
>>>>>
>>>>> Things to change in step 2:
>>>>>> Optimally you would be doing de novo training using mRNAseq results,
>>>>>> but
>>>>>> with
>>>>>> on;ly sparse protein alignments and such a fragmented assembly, you
>>>>>>are
>>>>>> probably better off just trying to adapt the human HMM files.  They
>>>>>> won't
>>>>>> match that well, but you probably won't have the evidence for De
>>>>>>Novo
>>>>>> training.  First make a copy of the augustus human species directory
>>>>>> and
>>>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>>>>> retraining
>>>>>> augustus using your new models.  You will have to edit multiple
>>>>>>files
>>>>>> in
>>>>>> the
>>>>>> directory after you copy it so that they no longer say human or homo
>>>>>> sapiens
>>>>>> internally or in the file name.  Use maker2zff to generate the
>>>>>>filtered
>>>>>> ZFF
>>>>>> file for training SNAP, but don't train SNAP.  Rather use the
>>>>>> training
>>>>>> file to
>>>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>>>
>>>>>> MAKE a backup of the step 1 maker output directory and run step 2 in
>>>>>> the
>>>>>> old
>>>>>> step 1 directory (this allows you to change the parameters and reuse
>>>>>> files
>>>>>> form step 1 so you don't have to recalculate all the protein and EST
>>>>>> alignments).  So control files for step 2 are identical to step 1
>>>>>> except
>>>>>> for
>>>>>> these parameters.
>>>>>>
>>>>>> protein2genome=0
>>>>>> augustus_species=lamprey
>>>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>>>
>>>>>> Don't both training SNAP here as you probably won't have enough data
>>>>>> and
>>>>>> you
>>>>>> assembly is too fragmented for it to work well, so just stick to
>>>>>> augustus.
>>>>>> Try SNAP if you want just to see how well it works.  Manually open
>>>>>>up
>>>>>> the
>>>>>> largest contigs in a viewer to look at the models produced from the
>>>>>> MAKER run
>>>>>> to see if they look reasonable (this will also help you decide
>>>>>> whether
>>>>>> to keep
>>>>>> SNAP).
>>>>>>
>>>>>
>>>>> Things to change in step 3:
>>>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>>>>>> make
>>>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>>>> ?/augustus/config/species/lamprey2 (editing all the files and names
>>>>>> as
>>>>>> you did
>>>>>> in step 2). This way you don't loose that training data if you
>>>>>>decide
>>>>>> to
>>>>>> step
>>>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>>>
>>>>>> augustus_species=lamprey2
>>>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>>>
>>>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>>>> (This
>>>>>> is
>>>>>> for file reuse, so the step will run fast).  This must be the exact
>>>>>> same
>>>>>> step
>>>>>> directory as step 2 for the reuse trick to work.
>>>>>>
>>>>>> Manually review the models and if you are satisfied move to step 4.
>>>>>> Also note
>>>>>> that most parameters including the protein, EST, and repeats should
>>>>>>not
>>>>>> change
>>>>>> from step1-step3, and should not be removed for step 4 either, you
>>>>>> can
>>>>>> add
>>>>>> more evidence, but don't remove evidence (like the repeats).
>>>>>>
>>>>>>
>>>>> Things to change in step 4:
>>>>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>>>>> step
>>>>>> 3
>>>>>> directory to get the smaller contigs annotated.  This should be your
>>>>>> final
>>>>>> step, although you can try altering other parameters or adding more
>>>>>> evidence
>>>>>> sources here etc.
>>>>>>
>>>>>>
>>>>> For other things to keep in mind, you should consider taking extra
>>>>> time
>>>>> to
>>>>> build a comprehensive library of repeats for your species, I know
>>>>>that
>>>>> Petromyzon marinus was virtually unannotatable until we had a very
>>>>> deep
>>>>> repeat library built for it.  Any repeat library should be used in
>>>>>all
>>>>> steps.  Also for lamprey, you will expect between 20,000-30,000 genes
>>>>> both
>>>>> because of your assemblies fragmentation and because of some
>>>>>ancestral
>>>>> genome duplication.  Also be aware that lampreys appear to undergo
>>>>> programmed genome loss in somatic tissues, so any gene count you get
>>>>> is
>>>>> only
>>>>> going to represent a maximum of 75-80% of all genes unless the
>>>>> assembly
>>>>> is
>>>>> derived from germline tissue.
>>>>>
>>>>> Thanks,
>>>>> Carson
>>>>>
>>>>>
>>>>>>
>>>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>
>>>>>> Hi Parul,
>>>>>>
>>>>>> In step one, if protein2genome isn't turned on, then the protein
>>>>>> alignments
>>>>>> wont be used to generate gene models. Carson said before to use
>>>>>> protein2genome
>>>>>> to generate gene models for your trainings set, but you should know
>>>>>> that
>>>>>> those
>>>>>> data aren't being used right now.
>>>>>>
>>>>>> In step 2, you can include the est and protein evidence that you
>>>>>>used
>>>>>> in
>>>>>> step
>>>>>> one, and the ab-initio predictors will takes those data as hints to
>>>>>> guide
>>>>>> their predictions. Also, are you reannotating human here? I'm just
>>>>>> wondering
>>>>>> why the snap file is called Pult, but the augustus species model is
>>>>>> human.
>>>>>> Also, I think you should include the same masking files from step 1,
>>>>>> otherwise
>>>>>> the ab-initio predictors will be predicting on the unmasked sequence
>>>>>> which
>>>>>> will give you many spurious predictions.
>>>>>>
>>>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>>>control
>>>>>> file
>>>>>> you sent for step 3 will just pass-through all of the data from
>>>>>>before.
>>>>>>
>>>>>> In step 4, I think what you'll get is pretty close to what you
>>>>>> already
>>>>>> had in
>>>>>> step 3. The gene models from step 3 are already based on the est and
>>>>>> protein
>>>>>> data from step 1, so without giving any different evidence or
>>>>>>ab-initio
>>>>>> predictors, I think that you will just get the same gene models that
>>>>>> you
>>>>>> got
>>>>>> from step 3. Those gene models are what you should be using to train
>>>>>> snap.
>>>>>> Also, is this the same genome as in the other steps? The genome file
>>>>>> here is
>>>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>>>
>>>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>>>create
>>>>>> models. If you don't give any evidence (EST or protein) maker will
>>>>>> not
>>>>>> annotate any gene models. You have also changed the augustus species
>>>>>> model in
>>>>>> this step, but I don't know what you've gained by going from one
>>>>>> species
>>>>>> to
>>>>>> another. You should be training augustus with the gene models and
>>>>>> then
>>>>>> creating a new species model in augustus. As I understand it, the
>>>>>> filter
>>>>>> only
>>>>>> operates on gene models, not ab-initio predictions or alignments, so
>>>>>>it
>>>>>> probably isn't doing anything the way you have it set.
>>>>>>
>>>>>> Step 6. I think step 5 and 6 should be combined. I don't know what
>>>>>> you
>>>>>> mean by
>>>>>> boot-strapping here too.
>>>>>>
>>>>>> Hopefully that clears up some of the confusion with how maker works.
>>>>>> Carson
>>>>>> will probably have a lot of suggestions too.
>>>>>>
>>>>>> Thanks,
>>>>>> Daniel
>>>>>>
>>>>>> Daniel Ence
>>>>>> Graduate Student
>>>>>> Eccles Institute of Human Genetics
>>>>>> University of Utah
>>>>>> 15 North 2030 East, Room 2100
>>>>>> Salt Lake City, UT 84112-5330
>>>>>> ________________________________________
>>>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>>>> To: carsonhh at gmail.com
>>>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>
>>>>>> Hi Carson,
>>>>>>
>>>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>>>> 30,000
>>>>>> genes.
>>>>>> Here are the step
>>>>>> Step1. EST and proteins are used to predict gene-models. the
>>>>>> resulting
>>>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>>>> turned
>>>>>> ON
>>>>>> Step2. Augustus and SNAP is used to predict genes.
>>>>>> Step3. The results are re-annoated(boot-strap)
>>>>>> Step4. EST and proteins are used to predict gene-models. The gff
>>>>>>file
>>>>>> from
>>>>>> step3. is used as model_gff. The resulting file is used as training
>>>>>> data-set for SNAP in step2
>>>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to
>>>>>>0.5
>>>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5
>>>>>> and
>>>>>> contig_size to 10kb
>>>>>>
>>>>>> Thanks and regards,
>>>>>> Parul Kudtarkar
>>>>>>
>>>>>> I have attached the configuration file for each step.
>>>>>>>  Your output has no genes.  They've all been filtered out.  The
>>>>>>>gene
>>>>>> predictions are left for reference purposes, but there are no gene
>>>>>> models
>>>>>>>  in the file.  You need to look at the type columns in the GFF3
>>>>>>>file
>>>>>>> -->
>>>>>> match/match_part features are evidence and reference data but not
>>>>>> models.
>>>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>>>>>> just
>>>>>> want gene models in your file you can use the gff3_merge script with
>>>>>> the
>>>>>> -g option, and it will only print out the gene models.
>>>>>>>  I think you may be misinterpreting what is happening at different
>>>>>>> steps,
>>>>>> as well as how to read the result files.  Could you give me a
>>>>>> detailed
>>>>>> explanation of what you expect to get back together with your
>>>>>>control
>>>>>> files and I can walk you through the configuration, and indicate
>>>>>>what
>>>>>> to
>>>>>> expect.  Also what was the report like from CEGMA. Could you include
>>>>>> the
>>>>>> report file that shows how complete your genome is and how
>>>>>>fragmented
>>>>>> it
>>>>>> is?
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>> Dear Carson,
>>>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>>>> Though for previous step(ab-intio gene predictions keep_preds was
>>>>>>>>set
>>>>>>>> to
>>>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>>>> Scaffold1_out.gff.
>>>>>>>> Please advice.
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>>  You should always get all predictions, but should only get
>>>>>>>>>models
>>>>>> (match/match_part) with AED scores less than 0.5.  You should never
>>>>>>get
>>>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>>>>> keep_preds set.
>>>>>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>>>>>> your
>>>>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>>>> case,
>>>>>>>>>  just set it to 0.  If the second one in the case, could you send
>>>>>>>>>me
>>>>>> example GFF3?
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>>> Dear Carson,
>>>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>>>> short
>>>>>>>>>>  ESTs.
>>>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>>>> prediction(used as training dataset)and abinitio
>>>>>>>>>> gene-prediction).
>>>>>> Here
>>>>>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>>>>>  however
>>>>>>>>>>  I
>>>>>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>>>>>  resulting
>>>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>>>>>  initial
>>>>>>>>>> gff3 file.
>>>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>>>>  eukaryotic
>>>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>>>>> file
>>>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 =
>>>>>>>>>> yes,
>>>>>>>>>> 0
>>>>>>>>>> =
>>>>>> no
>>>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0
>>>>>>>>>> =
>>>>>>>>>> no
>>>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0
>>>>>>=
>>>>>>>>>>  no
>>>>>>>>>> #-----MAKER Behavior Options
>>>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed
>>>>>>>>>> (bound
>>>>>>>>>> by
>>>>>> 0
>>>>>>>>>> and 1)
>>>>>>>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to
>>>>>>>>>>>be
>>>>>>>>>>> partial
>>>>>>>>>>> at
>>>>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>>>>> those
>>>>>> by
>>>>>>>>>>>  using maker's est_gff option to pass in results from cufflinks
>>>>>>>>>>>or
>>>>>>>>>>> trinity.
>>>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb
>>>>>>>>>>>in
>>>>>> size,
>>>>>>>>>>> just
>>>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>>>> maker_opts.ctl file.
>>>>>>>>>>>  Thanks,
>>>>>>>>>>>  Carson
>>>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>>>with
>>>>>> N50
>>>>>>>>>>>>  of
>>>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>>>> reason
>>>>>>>>>>>>  when
>>>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>>>> predicted
>>>>>> despite the model_gff file has few genes with scores less than 0.75?
>>>>>> Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>>>> contig.
>>>>>>>>>>>> First
>>>>>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>>>>>> also
>>>>>>>>>>>> have
>>>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>>>> getting
>>>>>> many
>>>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>>>> models
>>>>>> that
>>>>>>>>>>>> are
>>>>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>>>>> piece
>>>>>>>>>>>> of
>>>>>>>>>>>> a
>>>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>>>reason
>>>>>>>>>>>>  unless
>>>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>>>>>  protein
>>>>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>>>>> need
>>>>>> to
>>>>>>>>>>>> add
>>>>>>>>>>>>  more proteins from a couple of related species, and you might
>>>>>> consider
>>>>>>>>>>>> using protein2genome rather than est2genome as a predictor if
>>>>>>>>>>>>you
>>>>>> are
>>>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>>>> produced
>>>>>> models
>>>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>>>with
>>>>>> the
>>>>>>>>>>>> AED_threshold with such limited protein support does create an
>>>>>> artificial
>>>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>>>  How many contigs do you have in total and what is the N50
>>>>>>>>>>>> value
>>>>>> for
>>>>>>>>>>>> the
>>>>>>>>>>>> assembly? If you have a large number of very short contigs,
>>>>>>>>>>>>you
>>>>>>>>>>>> will
>>>>>>>>>>>>  get
>>>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>>>> contigs
>>>>>>>>>>>>  and
>>>>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>>>>> just
>>>>>> assembled in a slightly different way (so you can get bits and
>>>>>> pieces
>>>>>>>>>>>>  of
>>>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>>>  confounding
>>>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>>>> would
>>>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>>>  completeness
>>>>>>>>>>>> as
>>>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>>>> statistics
>>>>>>>>>>>> produced
>>>>>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>>>>>> those
>>>>>>>>>>>>  that
>>>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend
>>>>>>>>>>>>to
>>>>>>>>>>>> be
>>>>>> shorter
>>>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>>>CEGMA
>>>>>> gives
>>>>>>>>>>>>  a
>>>>>>>>>>>> high partial percentage and a low complete percentage, then
>>>>>>>>>>>> this
>>>>>>>>>>>>  pattern
>>>>>>>>>>>> can be expected to be even more exaggerated for other genes in
>>>>>>>>>>>> the
>>>>>> genome.
>>>>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>>>>> well
>>>>>> then
>>>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>>>genomes
>>>>>> end
>>>>>>>>>>>>  up
>>>>>>>>>>>> having extremely fragmented assemblies (on the order of
>>>>>>>>>>>>100,000
>>>>>> contigs),
>>>>>>>>>>>>  and if they are distantly related to other annotated species
>>>>>>>>>>>>few
>>>>>>>>>>>> proteins
>>>>>>>>>>>>  may align to the contigs because the introns in the
>>>>>>>>>>>>alignments
>>>>>> tend
>>>>>>>>>>>>  to
>>>>>>>>>>>> be
>>>>>>>>>>>>  so long and exons so short that it pushes down the
>>>>>>>>>>>> significance
>>>>>> scores
>>>>>>>>>>>> too
>>>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if
>>>>>>>>>>>> not
>>>>>> only
>>>>>>>>>>>>  way
>>>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>  Carson
>>>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>>score.
>>>>>> The
>>>>>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>>>>>> file
>>>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>>>  least
>>>>>>>>>>>>  5
>>>>>>>>>>>> genes with AED score less than 0.75. However there were no
>>>>>>>>>>>> genes
>>>>>>>>>>>>  predicted
>>>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have
>>>>>>>>>>>> also
>>>>>>>>>>>> attached
>>>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if
>>>>>>>>>>>>you
>>>>>>>>>>>> just
>>>>>>>>>>>> want
>>>>>>>>>>>>  to restrict final gene models to close matches directly
>>>>>>>>>>>>within
>>>>>>>>>>>> maker.
>>>>>>>>>>>> On
>>>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>>>> training
>>>>>>>>>>>>  gene
>>>>>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>>>>>  dataset
>>>>>>>>>>>> for
>>>>>>>>>>>>  SNAP training.  There are a number of filters available. Just
>>>>>> call
>>>>>>>>>>>>  the
>>>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>  Carson
>>>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>> Hi Parul,
>>>>>>>>>>>> I think the way you described (with the maker_opts.ctl file)
>>>>>>>>>>>>is
>>>>>> how
>>>>>>>>>>>> you
>>>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>>>> Daniel
>>>>>>>>>>>> Daniel Ence
>>>>>>>>>>>> Graduate Student
>>>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>>>> University of Utah
>>>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>>>> ________________________________________
>>>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>>  Kudtarkar
>>>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>>>> Also, are there any other parameters that are required when
>>>>>> filtering
>>>>>>>>>>>> based on AED score?
>>>>>>>>>>>>  Hello Carson,
>>>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>>>> models
>>>>>>>>>>>> at
>>>>>>>>>>>> specific AED score.
>>>>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>>>>> to
>>>>>>>>>>>> parameters
>>>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>> genes
>>>>>>>>>>>> gff3
>>>>>>>>>>>>  file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>threshold?
>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>>>>> 1
>>>>>>>>>>>>  is
>>>>>>>>>>>> worst
>>>>>>>>>>>>  as
>>>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>>>> parameter
>>>>>>>>>>>> to
>>>>>>>>>>>>  require better matching to the evidence by setting it closer
>>>>>> to
>>>>>>>>>>>> 0.
>>>>>>>>>>>> You
>>>>>>>>>>>>  can
>>>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>>>> your
>>>>>>>>>>>> calls
>>>>>>>>>>>> may
>>>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>>>  --Carson
>>>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>> Dear Maker community,
>>>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>  based
>>>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>>>Augustus
>>>>>> predictions, followed by boot-strapping. I would typically expect
>>>>>> 20-30K
>>>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>  indicating
>>>>>>>>>>>>  too
>>>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>>>> predication/script to retain predictions with AED score 1 and
>>>>>>>>>>>> if
>>>>>>>>>>>> yes
>>>>>>>>>>>> how
>>>>>>>>>>>> to go about this?
>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>> 
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>> -l
>>>>>>>>>>>> ab
>>>>>>>>>>>> .o
>>>>>>>>>>>> rg
>>>>>>>>>>>>  --
>>>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-l
>>>>>>>>>>>>a
>>>>>> b.
>>>>>>>>>>>> or
>>>>>>>>>>>> g
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-l
>>>>>>>>>>>>a
>>>>>> b.
>>>>>>>>>>>> or
>>>>>>>>>>>> g
>>>>>>>>>>>>  _______________________________________________
>>>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>>>>
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-l
>>>>>>>>>>>>ab
>>>>>> .o
>>>>>>>>>>>> rg
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>>>>
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> Scientific Programmer
>>>> Center for Computational Regulatory Genomics
>>>> Beckman Institute,
>>>> California Institute of Technology
>>>> http://www.spbase.org
>>>>
>>>
>>>
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>>>
>>
>>
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>





From parulk at caltech.edu  Thu Dec 13 15:16:53 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Thu, 13 Dec 2012 14:16:53 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCECAB6F.16FD3%carsonhh@gmail.com>
References: <CCECAB6F.16FD3%carsonhh@gmail.com>
Message-ID: <4575.131.215.15.234.1355437013.squirrel@webmail.caltech.edu>

Dear Carson,

Could you please advice how to combine results from protein2genome
derived models and cegma based training to be provided as training species
for augustus or are theses supposed to be run as separate maker2 run(i.e.
run maker2 with training set from protein2genome first followed by
cegma-based training set)

Thanks and regards,
Parul

> Thanks Parul.  If you need any more help, just let us know.
>
> --Carson
>
>
>
> On 12-12-10 10:28 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>
>>Dear Carson, Thanks a lot for detailed explanation and all the help with
>>running and understanding maker2.
>>
>>
>>> Yes.  Lamprey is not a good match for sea urchin.  When training
>>>Augusuts
>>> you can sometimes use other genomes as starting points and let Augustus
>>> then modify that species to match the models you provided, which can be
>>> better than de novo training under certain circumstances. But given sea
>>> urchin's evolutionary distance from all the other species bundled with
>>> augustus, its probably not a good starting point.  So protein2genome
>>> derived models and cegma based training are probably your best options.
>>>
>>> --Carson
>>>
>>>
>>> On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>
>>>>Sorry for not checking this before, just to answer my own question I
>>>>just
>>>>found after reading augustus documentation that autoAugTrain.pl should
>>>>work for generating training dataset for Augustus from using the
>>>>gene-model hints from first pass run of maker and using
>>>>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script
>>>> to
>>>>generate training.gb
>>>>
>>>>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>>>>
>>>>I believe should work better than using lamprey to train augustus.
>>>>
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>
>>>>> Dear Carson,
>>>>>
>>>>> Thanks for detailed explanation and help. Now we know the exact
>>>>>parameters
>>>>> that should help us with generating good gene-model.
>>>>>
>>>>> The genome for which we are working on gene predictions is
>>>>> Echinoderm(sea-urchin). lamprey was the closest organism for training
>>>>> augustus that I could find. A quick question for training augustus,
>>>>>there
>>>>> is augustus_species option how would you go from training data
>>>>> generated
>>>>> by zff2augustus_gbk.pl > train.gb as specified here
>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>>>>> generating the species folder that can be specified to
>>>>>augustus_species
>>>>> option.
>>>>>
>>>>> The average expected gene-length in our case is ~15kb.
>>>>> We also have a good repeat library for our genome.
>>>>>
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>
>>>>>> For step 2 and 3, use lamprey rather than human in augustus.  For
>>>>>>some
>>>>>> reason the current version of augustus doesn't diplay it as an
>>>>>> option
>>>>>> for
>>>>>> the species help menu (so I didn't see it), but it's there in
>>>>>> ?/augustus/config/species/lamprey
>>>>>>
>>>>>> For any additional training, make copies into
>>>>>> ?/augustus/config/species/lamprey2 and
>>>>>> ?/augustus/config/species/lamprey3
>>>>>>
>>>>>> Thanks,
>>>>>> Carson
>>>>>>
>>>>>>
>>>>>>
>>>>>> From:  Carson Holt <carsonhh at gmail.com>
>>>>>> Date:  Friday, 7 December, 2012 10:22 AM
>>>>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>>>>> "maker-devel at yandell-lab.org"
>>>>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>>>>> Subject:  Re: [maker-devel] AED score
>>>>>>
>>>>>> Just to add to Daniels comments.
>>>>>>
>>>>>> Things to change in step 1:
>>>>>>> protein= <just try and add more protein evidence in general>
>>>>>>> est2genome=0
>>>>>>> protein2genome=1
>>>>>>> split_hit=20000
>>>>>>> min_contig=50000
>>>>>>
>>>>>> Reasoning:
>>>>>>> Your ESTs are very short especially if this is a lamprey species
>>>>>>> which
>>>>>>> have
>>>>>>> very long introns and really short exons.  In lamprey (i.e.
>>>>>>> Petromyzon
>>>>>>> marinus), genes tend to be very long (remember gene lengths include
>>>>>>> introns
>>>>>>> and UTR and is not just the size of the coding sequence), so
>>>>>>> contigs
>>>>>>> shorter
>>>>>>> than 50kb are useless for training as you are unlikely to get nice
>>>>>>> complete
>>>>>>> gene models on those.  Also lampreys have very long introns, so you
>>>>>>> have
>>>>>>> to
>>>>>>> allow for bigger introns in alignments (split_hit parameter).
>>>>>>> Finally
>>>>>>> add as
>>>>>>> much protein evidence from as many sources as possible.  Your maker
>>>>>>> training
>>>>>>> run will take a long time as proteins take forever to align, but
>>>>>>> because
>>>>>>> of
>>>>>>> the evolutionary distance of lamprey from everything else and the
>>>>>>>short
>>>>>>> exon
>>>>>>> structure of its genome, very little aligns directly to its genome
>>>>>>>from
>>>>>>> other
>>>>>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>>>>>> species
>>>>>>> because of what you said about the  augustus species file you are
>>>>>>> using.
>>>>>>> Really the only thing closely related to lampreys unfortunately are
>>>>>>> other
>>>>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related
>>>>>>> to
>>>>>>> lamprey
>>>>>>> (while they branch closely together on the tree of life, there are
>>>>>>> too
>>>>>>> many
>>>>>>> years since the last common ancestor).  So while they may have
>>>>>>> similar
>>>>>>> issues
>>>>>>> related to annotation (long introns and short exons etc.) they will
>>>>>>>not
>>>>>>> really
>>>>>>> match that well for the gene predictor or even protein alignments.
>>>>>>
>>>>>> Additional note:
>>>>>>> I have training files for the lamprey species Petromyzon marinus
>>>>>>> for
>>>>>>> both
>>>>>>> Augustus and SNAP that I could share with you in a few week, when
>>>>>>>the
>>>>>>> genome
>>>>>>> publication is is released.  But before that happens, new gene
>>>>>>>models
>>>>>>> will be
>>>>>>> available  through the UCSC browser (hopefully within a couple of
>>>>>>> weeks), and
>>>>>>> gene models are already available through ENSEMBL.  Get those
>>>>>>>protein
>>>>>>> files
>>>>>>> for training, it may be a big help for you.  If you want early
>>>>>>>access
>>>>>>> to
>>>>>>> the
>>>>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>>>>request
>>>>>>> it
>>>>>>> from Weiming Li at Michigan State University (the head of that
>>>>>>>genome
>>>>>>> project).
>>>>>>>
>>>>>>
>>>>>>
>>>>>> Things to change in step 2:
>>>>>>> Optimally you would be doing de novo training using mRNAseq
>>>>>>> results,
>>>>>>> but
>>>>>>> with
>>>>>>> on;ly sparse protein alignments and such a fragmented assembly, you
>>>>>>>are
>>>>>>> probably better off just trying to adapt the human HMM files.  They
>>>>>>> won't
>>>>>>> match that well, but you probably won't have the evidence for De
>>>>>>>Novo
>>>>>>> training.  First make a copy of the augustus human species
>>>>>>> directory
>>>>>>> and
>>>>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>>>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>>>>>> retraining
>>>>>>> augustus using your new models.  You will have to edit multiple
>>>>>>>files
>>>>>>> in
>>>>>>> the
>>>>>>> directory after you copy it so that they no longer say human or
>>>>>>> homo
>>>>>>> sapiens
>>>>>>> internally or in the file name.  Use maker2zff to generate the
>>>>>>>filtered
>>>>>>> ZFF
>>>>>>> file for training SNAP, but don't train SNAP.  Rather use the
>>>>>>> training
>>>>>>> file to
>>>>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>>>>
>>>>>>> MAKE a backup of the step 1 maker output directory and run step 2
>>>>>>> in
>>>>>>> the
>>>>>>> old
>>>>>>> step 1 directory (this allows you to change the parameters and
>>>>>>> reuse
>>>>>>> files
>>>>>>> form step 1 so you don't have to recalculate all the protein and
>>>>>>> EST
>>>>>>> alignments).  So control files for step 2 are identical to step 1
>>>>>>> except
>>>>>>> for
>>>>>>> these parameters.
>>>>>>>
>>>>>>> protein2genome=0
>>>>>>> augustus_species=lamprey
>>>>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>>>>
>>>>>>> Don't both training SNAP here as you probably won't have enough
>>>>>>> data
>>>>>>> and
>>>>>>> you
>>>>>>> assembly is too fragmented for it to work well, so just stick to
>>>>>>> augustus.
>>>>>>> Try SNAP if you want just to see how well it works.  Manually open
>>>>>>>up
>>>>>>> the
>>>>>>> largest contigs in a viewer to look at the models produced from the
>>>>>>> MAKER run
>>>>>>> to see if they look reasonable (this will also help you decide
>>>>>>> whether
>>>>>>> to keep
>>>>>>> SNAP).
>>>>>>>
>>>>>>
>>>>>> Things to change in step 3:
>>>>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.
>>>>>>> But
>>>>>>> make
>>>>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>>>>> ?/augustus/config/species/lamprey2 (editing all the files and names
>>>>>>> as
>>>>>>> you did
>>>>>>> in step 2). This way you don't loose that training data if you
>>>>>>>decide
>>>>>>> to
>>>>>>> step
>>>>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>>>>
>>>>>>> augustus_species=lamprey2
>>>>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>>>>
>>>>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>>>>> (This
>>>>>>> is
>>>>>>> for file reuse, so the step will run fast).  This must be the exact
>>>>>>> same
>>>>>>> step
>>>>>>> directory as step 2 for the reuse trick to work.
>>>>>>>
>>>>>>> Manually review the models and if you are satisfied move to step 4.
>>>>>>> Also note
>>>>>>> that most parameters including the protein, EST, and repeats should
>>>>>>>not
>>>>>>> change
>>>>>>> from step1-step3, and should not be removed for step 4 either, you
>>>>>>> can
>>>>>>> add
>>>>>>> more evidence, but don't remove evidence (like the repeats).
>>>>>>>
>>>>>>>
>>>>>> Things to change in step 4:
>>>>>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>>>>>> step
>>>>>>> 3
>>>>>>> directory to get the smaller contigs annotated.  This should be
>>>>>>> your
>>>>>>> final
>>>>>>> step, although you can try altering other parameters or adding more
>>>>>>> evidence
>>>>>>> sources here etc.
>>>>>>>
>>>>>>>
>>>>>> For other things to keep in mind, you should consider taking extra
>>>>>> time
>>>>>> to
>>>>>> build a comprehensive library of repeats for your species, I know
>>>>>>that
>>>>>> Petromyzon marinus was virtually unannotatable until we had a very
>>>>>> deep
>>>>>> repeat library built for it.  Any repeat library should be used in
>>>>>>all
>>>>>> steps.  Also for lamprey, you will expect between 20,000-30,000
>>>>>> genes
>>>>>> both
>>>>>> because of your assemblies fragmentation and because of some
>>>>>>ancestral
>>>>>> genome duplication.  Also be aware that lampreys appear to undergo
>>>>>> programmed genome loss in somatic tissues, so any gene count you get
>>>>>> is
>>>>>> only
>>>>>> going to represent a maximum of 75-80% of all genes unless the
>>>>>> assembly
>>>>>> is
>>>>>> derived from germline tissue.
>>>>>>
>>>>>> Thanks,
>>>>>> Carson
>>>>>>
>>>>>>
>>>>>>>
>>>>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>
>>>>>>> Hi Parul,
>>>>>>>
>>>>>>> In step one, if protein2genome isn't turned on, then the protein
>>>>>>> alignments
>>>>>>> wont be used to generate gene models. Carson said before to use
>>>>>>> protein2genome
>>>>>>> to generate gene models for your trainings set, but you should know
>>>>>>> that
>>>>>>> those
>>>>>>> data aren't being used right now.
>>>>>>>
>>>>>>> In step 2, you can include the est and protein evidence that you
>>>>>>>used
>>>>>>> in
>>>>>>> step
>>>>>>> one, and the ab-initio predictors will takes those data as hints to
>>>>>>> guide
>>>>>>> their predictions. Also, are you reannotating human here? I'm just
>>>>>>> wondering
>>>>>>> why the snap file is called Pult, but the augustus species model is
>>>>>>> human.
>>>>>>> Also, I think you should include the same masking files from step
>>>>>>> 1,
>>>>>>> otherwise
>>>>>>> the ab-initio predictors will be predicting on the unmasked
>>>>>>> sequence
>>>>>>> which
>>>>>>> will give you many spurious predictions.
>>>>>>>
>>>>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>>>>control
>>>>>>> file
>>>>>>> you sent for step 3 will just pass-through all of the data from
>>>>>>>before.
>>>>>>>
>>>>>>> In step 4, I think what you'll get is pretty close to what you
>>>>>>> already
>>>>>>> had in
>>>>>>> step 3. The gene models from step 3 are already based on the est
>>>>>>> and
>>>>>>> protein
>>>>>>> data from step 1, so without giving any different evidence or
>>>>>>>ab-initio
>>>>>>> predictors, I think that you will just get the same gene models
>>>>>>> that
>>>>>>> you
>>>>>>> got
>>>>>>> from step 3. Those gene models are what you should be using to
>>>>>>> train
>>>>>>> snap.
>>>>>>> Also, is this the same genome as in the other steps? The genome
>>>>>>> file
>>>>>>> here is
>>>>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>>>>
>>>>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>>>>create
>>>>>>> models. If you don't give any evidence (EST or protein) maker will
>>>>>>> not
>>>>>>> annotate any gene models. You have also changed the augustus
>>>>>>> species
>>>>>>> model in
>>>>>>> this step, but I don't know what you've gained by going from one
>>>>>>> species
>>>>>>> to
>>>>>>> another. You should be training augustus with the gene models and
>>>>>>> then
>>>>>>> creating a new species model in augustus. As I understand it, the
>>>>>>> filter
>>>>>>> only
>>>>>>> operates on gene models, not ab-initio predictions or alignments,
>>>>>>> so
>>>>>>>it
>>>>>>> probably isn't doing anything the way you have it set.
>>>>>>>
>>>>>>> Step 6. I think step 5 and 6 should be combined. I don't know what
>>>>>>> you
>>>>>>> mean by
>>>>>>> boot-strapping here too.
>>>>>>>
>>>>>>> Hopefully that clears up some of the confusion with how maker
>>>>>>> works.
>>>>>>> Carson
>>>>>>> will probably have a lot of suggestions too.
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Daniel
>>>>>>>
>>>>>>> Daniel Ence
>>>>>>> Graduate Student
>>>>>>> Eccles Institute of Human Genetics
>>>>>>> University of Utah
>>>>>>> 15 North 2030 East, Room 2100
>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>> ________________________________________
>>>>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>>>>> To: carsonhh at gmail.com
>>>>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>
>>>>>>> Hi Carson,
>>>>>>>
>>>>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>>>>> 30,000
>>>>>>> genes.
>>>>>>> Here are the step
>>>>>>> Step1. EST and proteins are used to predict gene-models. the
>>>>>>> resulting
>>>>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>>>>> turned
>>>>>>> ON
>>>>>>> Step2. Augustus and SNAP is used to predict genes.
>>>>>>> Step3. The results are re-annoated(boot-strap)
>>>>>>> Step4. EST and proteins are used to predict gene-models. The gff
>>>>>>>file
>>>>>>> from
>>>>>>> step3. is used as model_gff. The resulting file is used as training
>>>>>>> data-set for SNAP in step2
>>>>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to
>>>>>>>0.5
>>>>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5
>>>>>>> and
>>>>>>> contig_size to 10kb
>>>>>>>
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>
>>>>>>> I have attached the configuration file for each step.
>>>>>>>>  Your output has no genes.  They've all been filtered out.  The
>>>>>>>>gene
>>>>>>> predictions are left for reference purposes, but there are no gene
>>>>>>> models
>>>>>>>>  in the file.  You need to look at the type columns in the GFF3
>>>>>>>>file
>>>>>>>> -->
>>>>>>> match/match_part features are evidence and reference data but not
>>>>>>> models.
>>>>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if
>>>>>>>> you
>>>>>>>> just
>>>>>>> want gene models in your file you can use the gff3_merge script
>>>>>>> with
>>>>>>> the
>>>>>>> -g option, and it will only print out the gene models.
>>>>>>>>  I think you may be misinterpreting what is happening at different
>>>>>>>> steps,
>>>>>>> as well as how to read the result files.  Could you give me a
>>>>>>> detailed
>>>>>>> explanation of what you expect to get back together with your
>>>>>>>control
>>>>>>> files and I can walk you through the configuration, and indicate
>>>>>>>what
>>>>>>> to
>>>>>>> expect.  Also what was the report like from CEGMA. Could you
>>>>>>> include
>>>>>>> the
>>>>>>> report file that shows how complete your genome is and how
>>>>>>>fragmented
>>>>>>> it
>>>>>>> is?
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>>> Dear Carson,
>>>>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>>>>> Though for previous step(ab-intio gene predictions keep_preds was
>>>>>>>>>set
>>>>>>>>> to
>>>>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>>>>> Scaffold1_out.gff.
>>>>>>>>> Please advice.
>>>>>>>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>  You should always get all predictions, but should only get
>>>>>>>>>>models
>>>>>>> (match/match_part) with AED scores less than 0.5.  You should never
>>>>>>>get
>>>>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you
>>>>>>>>>> have
>>>>>>> keep_preds set.
>>>>>>>>>>  Do you have keeps_preds set or gene models with AED values
>>>>>>>>>> above
>>>>>>>>>> your
>>>>>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>>>>> case,
>>>>>>>>>>  just set it to 0.  If the second one in the case, could you
>>>>>>>>>> send
>>>>>>>>>>me
>>>>>>> example GFF3?
>>>>>>>>>>  Thanks,
>>>>>>>>>>  Carson
>>>>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>>> Dear Carson,
>>>>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>>>>> short
>>>>>>>>>>>  ESTs.
>>>>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>>>>> prediction(used as training dataset)and abinitio
>>>>>>>>>>> gene-prediction).
>>>>>>> Here
>>>>>>>>>>> are the control parameters I am using with AED score set to
>>>>>>>>>>> 0.5,
>>>>>>>>>>>  however
>>>>>>>>>>>  I
>>>>>>>>>>> get predictions that includes the ones with AED score of 1.00
>>>>>>>>>>> in
>>>>>>>>>>>  resulting
>>>>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3
>>>>>>>>>>> of
>>>>>>>>>>>  initial
>>>>>>>>>>> gff3 file.
>>>>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>>>>>  eukaryotic
>>>>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this
>>>>>>>>>>> gff3
>>>>>>>>>>> file
>>>>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 =
>>>>>>>>>>> yes,
>>>>>>>>>>> 0
>>>>>>>>>>> =
>>>>>>> no
>>>>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes,
>>>>>>>>>>> 0
>>>>>>>>>>> =
>>>>>>>>>>> no
>>>>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0
>>>>>>>=
>>>>>>>>>>>  no
>>>>>>>>>>> #-----MAKER Behavior Options
>>>>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed
>>>>>>>>>>> (bound
>>>>>>>>>>> by
>>>>>>> 0
>>>>>>>>>>> and 1)
>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to
>>>>>>>>>>>>be
>>>>>>>>>>>> partial
>>>>>>>>>>>> at
>>>>>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>>>>>> those
>>>>>>> by
>>>>>>>>>>>>  using maker's est_gff option to pass in results from
>>>>>>>>>>>> cufflinks
>>>>>>>>>>>>or
>>>>>>>>>>>> trinity.
>>>>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb
>>>>>>>>>>>>in
>>>>>>> size,
>>>>>>>>>>>> just
>>>>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>>>>> maker_opts.ctl file.
>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>  Carson
>>>>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>>>>with
>>>>>>> N50
>>>>>>>>>>>>>  of
>>>>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>>>>> reason
>>>>>>>>>>>>>  when
>>>>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>>>>> predicted
>>>>>>> despite the model_gff file has few genes with scores less than
>>>>>>> 0.75?
>>>>>>> Thanks and regards,
>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>>>>> contig.
>>>>>>>>>>>>> First
>>>>>>>>>>>>>  it seems to be repeat rich with a very low gene density.
>>>>>>>>>>>>> You
>>>>>>>>>>>>> also
>>>>>>>>>>>>> have
>>>>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>>>>> getting
>>>>>>> many
>>>>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>>>>> models
>>>>>>> that
>>>>>>>>>>>>> are
>>>>>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>>>>>> piece
>>>>>>>>>>>>> of
>>>>>>>>>>>>> a
>>>>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>>>>reason
>>>>>>>>>>>>>  unless
>>>>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).
>>>>>>>>>>>>> Your
>>>>>>>>>>>>>  protein
>>>>>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>>>>>> need
>>>>>>> to
>>>>>>>>>>>>> add
>>>>>>>>>>>>>  more proteins from a couple of related species, and you
>>>>>>>>>>>>> might
>>>>>>> consider
>>>>>>>>>>>>> using protein2genome rather than est2genome as a predictor if
>>>>>>>>>>>>>you
>>>>>>> are
>>>>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>>>>> produced
>>>>>>> models
>>>>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>>>>with
>>>>>>> the
>>>>>>>>>>>>> AED_threshold with such limited protein support does create
>>>>>>>>>>>>> an
>>>>>>> artificial
>>>>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>>>>  How many contigs do you have in total and what is the N50
>>>>>>>>>>>>> value
>>>>>>> for
>>>>>>>>>>>>> the
>>>>>>>>>>>>> assembly? If you have a large number of very short contigs,
>>>>>>>>>>>>>you
>>>>>>>>>>>>> will
>>>>>>>>>>>>>  get
>>>>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>>>>> contigs
>>>>>>>>>>>>>  and
>>>>>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>>>>>> just
>>>>>>> assembled in a slightly different way (so you can get bits and
>>>>>>> pieces
>>>>>>>>>>>>>  of
>>>>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>>>>  confounding
>>>>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>>>>> would
>>>>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>>>>  completeness
>>>>>>>>>>>>> as
>>>>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>>>>> statistics
>>>>>>>>>>>>> produced
>>>>>>>>>>>>>  is a percent of genes that are found complete (end to end)
>>>>>>>>>>>>> vs
>>>>>>> those
>>>>>>>>>>>>>  that
>>>>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend
>>>>>>>>>>>>>to
>>>>>>>>>>>>> be
>>>>>>> shorter
>>>>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>>>>CEGMA
>>>>>>> gives
>>>>>>>>>>>>>  a
>>>>>>>>>>>>> high partial percentage and a low complete percentage, then
>>>>>>>>>>>>> this
>>>>>>>>>>>>>  pattern
>>>>>>>>>>>>> can be expected to be even more exaggerated for other genes
>>>>>>>>>>>>> in
>>>>>>>>>>>>> the
>>>>>>> genome.
>>>>>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>>>>>> well
>>>>>>> then
>>>>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>>>>genomes
>>>>>>> end
>>>>>>>>>>>>>  up
>>>>>>>>>>>>> having extremely fragmented assemblies (on the order of
>>>>>>>>>>>>>100,000
>>>>>>> contigs),
>>>>>>>>>>>>>  and if they are distantly related to other annotated species
>>>>>>>>>>>>>few
>>>>>>>>>>>>> proteins
>>>>>>>>>>>>>  may align to the contigs because the introns in the
>>>>>>>>>>>>>alignments
>>>>>>> tend
>>>>>>>>>>>>>  to
>>>>>>>>>>>>> be
>>>>>>>>>>>>>  so long and exons so short that it pushes down the
>>>>>>>>>>>>> significance
>>>>>>> scores
>>>>>>>>>>>>> too
>>>>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if
>>>>>>>>>>>>> not
>>>>>>> only
>>>>>>>>>>>>>  way
>>>>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>>>score.
>>>>>>> The
>>>>>>>>>>>>> input gff3 file was provided to option model_pred(see
>>>>>>>>>>>>> attached
>>>>>>>>>>>>> file
>>>>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>>>>  least
>>>>>>>>>>>>>  5
>>>>>>>>>>>>> genes with AED score less than 0.75. However there were no
>>>>>>>>>>>>> genes
>>>>>>>>>>>>>  predicted
>>>>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have
>>>>>>>>>>>>> also
>>>>>>>>>>>>> attached
>>>>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if
>>>>>>>>>>>>>you
>>>>>>>>>>>>> just
>>>>>>>>>>>>> want
>>>>>>>>>>>>>  to restrict final gene models to close matches directly
>>>>>>>>>>>>>within
>>>>>>>>>>>>> maker.
>>>>>>>>>>>>> On
>>>>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>>>>> training
>>>>>>>>>>>>>  gene
>>>>>>>>>>>>> predictors, use the maker2zff script for generating a
>>>>>>>>>>>>> filtered
>>>>>>>>>>>>>  dataset
>>>>>>>>>>>>> for
>>>>>>>>>>>>>  SNAP training.  There are a number of filters available.
>>>>>>>>>>>>> Just
>>>>>>> call
>>>>>>>>>>>>>  the
>>>>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>> Hi Parul,
>>>>>>>>>>>>> I think the way you described (with the maker_opts.ctl file)
>>>>>>>>>>>>>is
>>>>>>> how
>>>>>>>>>>>>> you
>>>>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>>>>> Daniel
>>>>>>>>>>>>> Daniel Ence
>>>>>>>>>>>>> Graduate Student
>>>>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>>>>> University of Utah
>>>>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>>>>> ________________________________________
>>>>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>>>  Kudtarkar
>>>>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>>>>> Also, are there any other parameters that are required when
>>>>>>> filtering
>>>>>>>>>>>>> based on AED score?
>>>>>>>>>>>>>  Hello Carson,
>>>>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>>>>> models
>>>>>>>>>>>>> at
>>>>>>>>>>>>> specific AED score.
>>>>>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>>>>>> to
>>>>>>>>>>>>> parameters
>>>>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>> genes
>>>>>>>>>>>>> gff3
>>>>>>>>>>>>>  file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>>threshold?
>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>>>>>> 1
>>>>>>>>>>>>>  is
>>>>>>>>>>>>> worst
>>>>>>>>>>>>>  as
>>>>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>>>>> parameter
>>>>>>>>>>>>> to
>>>>>>>>>>>>>  require better matching to the evidence by setting it closer
>>>>>>> to
>>>>>>>>>>>>> 0.
>>>>>>>>>>>>> You
>>>>>>>>>>>>>  can
>>>>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>>>>> your
>>>>>>>>>>>>> calls
>>>>>>>>>>>>> may
>>>>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>>>>  --Carson
>>>>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>> Dear Maker community,
>>>>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>  based
>>>>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>>>>Augustus
>>>>>>> predictions, followed by boot-strapping. I would typically expect
>>>>>>> 20-30K
>>>>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>  indicating
>>>>>>>>>>>>>  too
>>>>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>>>>> predication/script to retain predictions with AED score 1 and
>>>>>>>>>>>>> if
>>>>>>>>>>>>> yes
>>>>>>>>>>>>> how
>>>>>>>>>>>>> to go about this?
>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>> -l
>>>>>>>>>>>>> ab
>>>>>>>>>>>>> .o
>>>>>>>>>>>>> rg
>>>>>>>>>>>>>  --
>>>>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>>-l
>>>>>>>>>>>>>a
>>>>>>> b.
>>>>>>>>>>>>> or
>>>>>>>>>>>>> g
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>>-l
>>>>>>>>>>>>>a
>>>>>>> b.
>>>>>>>>>>>>> or
>>>>>>>>>>>>> g
>>>>>>>>>>>>>  _______________________________________________
>>>>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>>>>>
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>>-l
>>>>>>>>>>>>>ab
>>>>>>> .o
>>>>>>>>>>>>> rg
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>>
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>>>>
>>>>
>>>>
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>>>
>>>
>>>
>>>
>>
>>
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From carsonhh at gmail.com  Fri Dec 14 14:17:55 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 14 Dec 2012 16:17:55 -0500
Subject: [maker-devel] AED score
In-Reply-To: <4575.131.215.15.234.1355437013.squirrel@webmail.caltech.edu>
Message-ID: <CCF100EF.170E7%carsonhh@gmail.com>

You can either train with cegma first and then train a second time with
the protein2genome calls, or combine the cegma and protein2genome ZFF
files (from maker2zff and cegma2zff), then use that one file to generate
the training data for augustus.  Augustus allows you to keep training, so
rather than training a new species each time, you can specify an existing
species you trained before, and then refine the existing model using the
additional training data.

--Carson



On 12-12-13 5:16 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Carson,
>
>Could you please advice how to combine results from protein2genome
>derived models and cegma based training to be provided as training species
>for augustus or are theses supposed to be run as separate maker2 run(i.e.
>run maker2 with training set from protein2genome first followed by
>cegma-based training set)
>
>Thanks and regards,
>Parul
>
>> Thanks Parul.  If you need any more help, just let us know.
>>
>> --Carson
>>
>>
>>
>> On 12-12-10 10:28 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>
>>>Dear Carson, Thanks a lot for detailed explanation and all the help with
>>>running and understanding maker2.
>>>
>>>
>>>> Yes.  Lamprey is not a good match for sea urchin.  When training
>>>>Augusuts
>>>> you can sometimes use other genomes as starting points and let
>>>>Augustus
>>>> then modify that species to match the models you provided, which can
>>>>be
>>>> better than de novo training under certain circumstances. But given
>>>>sea
>>>> urchin's evolutionary distance from all the other species bundled with
>>>> augustus, its probably not a good starting point.  So protein2genome
>>>> derived models and cegma based training are probably your best
>>>>options.
>>>>
>>>> --Carson
>>>>
>>>>
>>>> On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>
>>>>>Sorry for not checking this before, just to answer my own question I
>>>>>just
>>>>>found after reading augustus documentation that autoAugTrain.pl should
>>>>>work for generating training dataset for Augustus from using the
>>>>>gene-model hints from first pass run of maker and using
>>>>>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script
>>>>> to
>>>>>generate training.gb
>>>>>
>>>>>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>>>>>
>>>>>I believe should work better than using lamprey to train augustus.
>>>>>
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>
>>>>>> Dear Carson,
>>>>>>
>>>>>> Thanks for detailed explanation and help. Now we know the exact
>>>>>>parameters
>>>>>> that should help us with generating good gene-model.
>>>>>>
>>>>>> The genome for which we are working on gene predictions is
>>>>>> Echinoderm(sea-urchin). lamprey was the closest organism for
>>>>>>training
>>>>>> augustus that I could find. A quick question for training augustus,
>>>>>>there
>>>>>> is augustus_species option how would you go from training data
>>>>>> generated
>>>>>> by zff2augustus_gbk.pl > train.gb as specified here
>>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>>>>>> generating the species folder that can be specified to
>>>>>>augustus_species
>>>>>> option.
>>>>>>
>>>>>> The average expected gene-length in our case is ~15kb.
>>>>>> We also have a good repeat library for our genome.
>>>>>>
>>>>>> Thanks and regards,
>>>>>> Parul Kudtarkar
>>>>>>
>>>>>>> For step 2 and 3, use lamprey rather than human in augustus.  For
>>>>>>>some
>>>>>>> reason the current version of augustus doesn't diplay it as an
>>>>>>> option
>>>>>>> for
>>>>>>> the species help menu (so I didn't see it), but it's there in
>>>>>>> ?/augustus/config/species/lamprey
>>>>>>>
>>>>>>> For any additional training, make copies into
>>>>>>> ?/augustus/config/species/lamprey2 and
>>>>>>> ?/augustus/config/species/lamprey3
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> From:  Carson Holt <carsonhh at gmail.com>
>>>>>>> Date:  Friday, 7 December, 2012 10:22 AM
>>>>>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>>>>>> "maker-devel at yandell-lab.org"
>>>>>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>>>>>> Subject:  Re: [maker-devel] AED score
>>>>>>>
>>>>>>> Just to add to Daniels comments.
>>>>>>>
>>>>>>> Things to change in step 1:
>>>>>>>> protein= <just try and add more protein evidence in general>
>>>>>>>> est2genome=0
>>>>>>>> protein2genome=1
>>>>>>>> split_hit=20000
>>>>>>>> min_contig=50000
>>>>>>>
>>>>>>> Reasoning:
>>>>>>>> Your ESTs are very short especially if this is a lamprey species
>>>>>>>> which
>>>>>>>> have
>>>>>>>> very long introns and really short exons.  In lamprey (i.e.
>>>>>>>> Petromyzon
>>>>>>>> marinus), genes tend to be very long (remember gene lengths
>>>>>>>>include
>>>>>>>> introns
>>>>>>>> and UTR and is not just the size of the coding sequence), so
>>>>>>>> contigs
>>>>>>>> shorter
>>>>>>>> than 50kb are useless for training as you are unlikely to get nice
>>>>>>>> complete
>>>>>>>> gene models on those.  Also lampreys have very long introns, so
>>>>>>>>you
>>>>>>>> have
>>>>>>>> to
>>>>>>>> allow for bigger introns in alignments (split_hit parameter).
>>>>>>>> Finally
>>>>>>>> add as
>>>>>>>> much protein evidence from as many sources as possible.  Your
>>>>>>>>maker
>>>>>>>> training
>>>>>>>> run will take a long time as proteins take forever to align, but
>>>>>>>> because
>>>>>>>> of
>>>>>>>> the evolutionary distance of lamprey from everything else and the
>>>>>>>>short
>>>>>>>> exon
>>>>>>>> structure of its genome, very little aligns directly to its genome
>>>>>>>>from
>>>>>>>> other
>>>>>>>> deuterstome and vertebrate species.  I'm assuming this is a
>>>>>>>>lamprey
>>>>>>>> species
>>>>>>>> because of what you said about the  augustus species file you are
>>>>>>>> using.
>>>>>>>> Really the only thing closely related to lampreys unfortunately
>>>>>>>>are
>>>>>>>> other
>>>>>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related
>>>>>>>> to
>>>>>>>> lamprey
>>>>>>>> (while they branch closely together on the tree of life, there are
>>>>>>>> too
>>>>>>>> many
>>>>>>>> years since the last common ancestor).  So while they may have
>>>>>>>> similar
>>>>>>>> issues
>>>>>>>> related to annotation (long introns and short exons etc.) they
>>>>>>>>will
>>>>>>>>not
>>>>>>>> really
>>>>>>>> match that well for the gene predictor or even protein alignments.
>>>>>>>
>>>>>>> Additional note:
>>>>>>>> I have training files for the lamprey species Petromyzon marinus
>>>>>>>> for
>>>>>>>> both
>>>>>>>> Augustus and SNAP that I could share with you in a few week, when
>>>>>>>>the
>>>>>>>> genome
>>>>>>>> publication is is released.  But before that happens, new gene
>>>>>>>>models
>>>>>>>> will be
>>>>>>>> available  through the UCSC browser (hopefully within a couple of
>>>>>>>> weeks), and
>>>>>>>> gene models are already available through ENSEMBL.  Get those
>>>>>>>>protein
>>>>>>>> files
>>>>>>>> for training, it may be a big help for you.  If you want early
>>>>>>>>access
>>>>>>>> to
>>>>>>>> the
>>>>>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>>>>>request
>>>>>>>> it
>>>>>>>> from Weiming Li at Michigan State University (the head of that
>>>>>>>>genome
>>>>>>>> project).
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Things to change in step 2:
>>>>>>>> Optimally you would be doing de novo training using mRNAseq
>>>>>>>> results,
>>>>>>>> but
>>>>>>>> with
>>>>>>>> on;ly sparse protein alignments and such a fragmented assembly,
>>>>>>>>you
>>>>>>>>are
>>>>>>>> probably better off just trying to adapt the human HMM files.
>>>>>>>>They
>>>>>>>> won't
>>>>>>>> match that well, but you probably won't have the evidence for De
>>>>>>>>Novo
>>>>>>>> training.  First make a copy of the augustus human species
>>>>>>>> directory
>>>>>>>> and
>>>>>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>>>>>> ?/augustus/config/species/lamprey).  Use it as the base species
>>>>>>>>for
>>>>>>>> retraining
>>>>>>>> augustus using your new models.  You will have to edit multiple
>>>>>>>>files
>>>>>>>> in
>>>>>>>> the
>>>>>>>> directory after you copy it so that they no longer say human or
>>>>>>>> homo
>>>>>>>> sapiens
>>>>>>>> internally or in the file name.  Use maker2zff to generate the
>>>>>>>>filtered
>>>>>>>> ZFF
>>>>>>>> file for training SNAP, but don't train SNAP.  Rather use the
>>>>>>>> training
>>>>>>>> file to
>>>>>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>>>>>
>>>>>>>> MAKE a backup of the step 1 maker output directory and run step 2
>>>>>>>> in
>>>>>>>> the
>>>>>>>> old
>>>>>>>> step 1 directory (this allows you to change the parameters and
>>>>>>>> reuse
>>>>>>>> files
>>>>>>>> form step 1 so you don't have to recalculate all the protein and
>>>>>>>> EST
>>>>>>>> alignments).  So control files for step 2 are identical to step 1
>>>>>>>> except
>>>>>>>> for
>>>>>>>> these parameters.
>>>>>>>>
>>>>>>>> protein2genome=0
>>>>>>>> augustus_species=lamprey
>>>>>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>>>>>
>>>>>>>> Don't both training SNAP here as you probably won't have enough
>>>>>>>> data
>>>>>>>> and
>>>>>>>> you
>>>>>>>> assembly is too fragmented for it to work well, so just stick to
>>>>>>>> augustus.
>>>>>>>> Try SNAP if you want just to see how well it works.  Manually open
>>>>>>>>up
>>>>>>>> the
>>>>>>>> largest contigs in a viewer to look at the models produced from
>>>>>>>>the
>>>>>>>> MAKER run
>>>>>>>> to see if they look reasonable (this will also help you decide
>>>>>>>> whether
>>>>>>>> to keep
>>>>>>>> SNAP).
>>>>>>>>
>>>>>>>
>>>>>>> Things to change in step 3:
>>>>>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.
>>>>>>>> But
>>>>>>>> make
>>>>>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>>>>>> ?/augustus/config/species/lamprey2 (editing all the files and
>>>>>>>>names
>>>>>>>> as
>>>>>>>> you did
>>>>>>>> in step 2). This way you don't loose that training data if you
>>>>>>>>decide
>>>>>>>> to
>>>>>>>> step
>>>>>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>>>>>
>>>>>>>> augustus_species=lamprey2
>>>>>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>>>>>
>>>>>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>>>>>> (This
>>>>>>>> is
>>>>>>>> for file reuse, so the step will run fast).  This must be the
>>>>>>>>exact
>>>>>>>> same
>>>>>>>> step
>>>>>>>> directory as step 2 for the reuse trick to work.
>>>>>>>>
>>>>>>>> Manually review the models and if you are satisfied move to step
>>>>>>>>4.
>>>>>>>> Also note
>>>>>>>> that most parameters including the protein, EST, and repeats
>>>>>>>>should
>>>>>>>>not
>>>>>>>> change
>>>>>>>> from step1-step3, and should not be removed for step 4 either, you
>>>>>>>> can
>>>>>>>> add
>>>>>>>> more evidence, but don't remove evidence (like the repeats).
>>>>>>>>
>>>>>>>>
>>>>>>> Things to change in step 4:
>>>>>>>> For this step, just set min_contig=10000 and rerun MAKER inside
>>>>>>>>the
>>>>>>>> step
>>>>>>>> 3
>>>>>>>> directory to get the smaller contigs annotated.  This should be
>>>>>>>> your
>>>>>>>> final
>>>>>>>> step, although you can try altering other parameters or adding
>>>>>>>>more
>>>>>>>> evidence
>>>>>>>> sources here etc.
>>>>>>>>
>>>>>>>>
>>>>>>> For other things to keep in mind, you should consider taking extra
>>>>>>> time
>>>>>>> to
>>>>>>> build a comprehensive library of repeats for your species, I know
>>>>>>>that
>>>>>>> Petromyzon marinus was virtually unannotatable until we had a very
>>>>>>> deep
>>>>>>> repeat library built for it.  Any repeat library should be used in
>>>>>>>all
>>>>>>> steps.  Also for lamprey, you will expect between 20,000-30,000
>>>>>>> genes
>>>>>>> both
>>>>>>> because of your assemblies fragmentation and because of some
>>>>>>>ancestral
>>>>>>> genome duplication.  Also be aware that lampreys appear to undergo
>>>>>>> programmed genome loss in somatic tissues, so any gene count you
>>>>>>>get
>>>>>>> is
>>>>>>> only
>>>>>>> going to represent a maximum of 75-80% of all genes unless the
>>>>>>> assembly
>>>>>>> is
>>>>>>> derived from germline tissue.
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>>
>>>>>>>
>>>>>>>>
>>>>>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>>
>>>>>>>> Hi Parul,
>>>>>>>>
>>>>>>>> In step one, if protein2genome isn't turned on, then the protein
>>>>>>>> alignments
>>>>>>>> wont be used to generate gene models. Carson said before to use
>>>>>>>> protein2genome
>>>>>>>> to generate gene models for your trainings set, but you should
>>>>>>>>know
>>>>>>>> that
>>>>>>>> those
>>>>>>>> data aren't being used right now.
>>>>>>>>
>>>>>>>> In step 2, you can include the est and protein evidence that you
>>>>>>>>used
>>>>>>>> in
>>>>>>>> step
>>>>>>>> one, and the ab-initio predictors will takes those data as hints
>>>>>>>>to
>>>>>>>> guide
>>>>>>>> their predictions. Also, are you reannotating human here? I'm just
>>>>>>>> wondering
>>>>>>>> why the snap file is called Pult, but the augustus species model
>>>>>>>>is
>>>>>>>> human.
>>>>>>>> Also, I think you should include the same masking files from step
>>>>>>>> 1,
>>>>>>>> otherwise
>>>>>>>> the ab-initio predictors will be predicting on the unmasked
>>>>>>>> sequence
>>>>>>>> which
>>>>>>>> will give you many spurious predictions.
>>>>>>>>
>>>>>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>>>>>control
>>>>>>>> file
>>>>>>>> you sent for step 3 will just pass-through all of the data from
>>>>>>>>before.
>>>>>>>>
>>>>>>>> In step 4, I think what you'll get is pretty close to what you
>>>>>>>> already
>>>>>>>> had in
>>>>>>>> step 3. The gene models from step 3 are already based on the est
>>>>>>>> and
>>>>>>>> protein
>>>>>>>> data from step 1, so without giving any different evidence or
>>>>>>>>ab-initio
>>>>>>>> predictors, I think that you will just get the same gene models
>>>>>>>> that
>>>>>>>> you
>>>>>>>> got
>>>>>>>> from step 3. Those gene models are what you should be using to
>>>>>>>> train
>>>>>>>> snap.
>>>>>>>> Also, is this the same genome as in the other steps? The genome
>>>>>>>> file
>>>>>>>> here is
>>>>>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>>>>>
>>>>>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>>>>>create
>>>>>>>> models. If you don't give any evidence (EST or protein) maker will
>>>>>>>> not
>>>>>>>> annotate any gene models. You have also changed the augustus
>>>>>>>> species
>>>>>>>> model in
>>>>>>>> this step, but I don't know what you've gained by going from one
>>>>>>>> species
>>>>>>>> to
>>>>>>>> another. You should be training augustus with the gene models and
>>>>>>>> then
>>>>>>>> creating a new species model in augustus. As I understand it, the
>>>>>>>> filter
>>>>>>>> only
>>>>>>>> operates on gene models, not ab-initio predictions or alignments,
>>>>>>>> so
>>>>>>>>it
>>>>>>>> probably isn't doing anything the way you have it set.
>>>>>>>>
>>>>>>>> Step 6. I think step 5 and 6 should be combined. I don't know what
>>>>>>>> you
>>>>>>>> mean by
>>>>>>>> boot-strapping here too.
>>>>>>>>
>>>>>>>> Hopefully that clears up some of the confusion with how maker
>>>>>>>> works.
>>>>>>>> Carson
>>>>>>>> will probably have a lot of suggestions too.
>>>>>>>>
>>>>>>>> Thanks,
>>>>>>>> Daniel
>>>>>>>>
>>>>>>>> Daniel Ence
>>>>>>>> Graduate Student
>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>> University of Utah
>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>> ________________________________________
>>>>>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>>>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>>>>>> To: carsonhh at gmail.com
>>>>>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>
>>>>>>>> Hi Carson,
>>>>>>>>
>>>>>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>>>>>> 30,000
>>>>>>>> genes.
>>>>>>>> Here are the step
>>>>>>>> Step1. EST and proteins are used to predict gene-models. the
>>>>>>>> resulting
>>>>>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>>>>>> turned
>>>>>>>> ON
>>>>>>>> Step2. Augustus and SNAP is used to predict genes.
>>>>>>>> Step3. The results are re-annoated(boot-strap)
>>>>>>>> Step4. EST and proteins are used to predict gene-models. The gff
>>>>>>>>file
>>>>>>>> from
>>>>>>>> step3. is used as model_gff. The resulting file is used as
>>>>>>>>training
>>>>>>>> data-set for SNAP in step2
>>>>>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set
>>>>>>>>to
>>>>>>>>0.5
>>>>>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5
>>>>>>>> and
>>>>>>>> contig_size to 10kb
>>>>>>>>
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>
>>>>>>>> I have attached the configuration file for each step.
>>>>>>>>>  Your output has no genes.  They've all been filtered out.  The
>>>>>>>>>gene
>>>>>>>> predictions are left for reference purposes, but there are no gene
>>>>>>>> models
>>>>>>>>>  in the file.  You need to look at the type columns in the GFF3
>>>>>>>>>file
>>>>>>>>> -->
>>>>>>>> match/match_part features are evidence and reference data but not
>>>>>>>> models.
>>>>>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if
>>>>>>>>> you
>>>>>>>>> just
>>>>>>>> want gene models in your file you can use the gff3_merge script
>>>>>>>> with
>>>>>>>> the
>>>>>>>> -g option, and it will only print out the gene models.
>>>>>>>>>  I think you may be misinterpreting what is happening at
>>>>>>>>>different
>>>>>>>>> steps,
>>>>>>>> as well as how to read the result files.  Could you give me a
>>>>>>>> detailed
>>>>>>>> explanation of what you expect to get back together with your
>>>>>>>>control
>>>>>>>> files and I can walk you through the configuration, and indicate
>>>>>>>>what
>>>>>>>> to
>>>>>>>> expect.  Also what was the report like from CEGMA. Could you
>>>>>>>> include
>>>>>>>> the
>>>>>>>> report file that shows how complete your genome is and how
>>>>>>>>fragmented
>>>>>>>> it
>>>>>>>> is?
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>>> Dear Carson,
>>>>>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>>>>>> Though for previous step(ab-intio gene predictions keep_preds
>>>>>>>>>>was
>>>>>>>>>>set
>>>>>>>>>> to
>>>>>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>>>>>> Scaffold1_out.gff.
>>>>>>>>>> Please advice.
>>>>>>>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>  You should always get all predictions, but should only get
>>>>>>>>>>>models
>>>>>>>> (match/match_part) with AED scores less than 0.5.  You should
>>>>>>>>never
>>>>>>>>get
>>>>>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you
>>>>>>>>>>> have
>>>>>>>> keep_preds set.
>>>>>>>>>>>  Do you have keeps_preds set or gene models with AED values
>>>>>>>>>>> above
>>>>>>>>>>> your
>>>>>>>> threshold (not match/match_part features)?  If the first one is
>>>>>>>>the
>>>>>>>>>>> case,
>>>>>>>>>>>  just set it to 0.  If the second one in the case, could you
>>>>>>>>>>> send
>>>>>>>>>>>me
>>>>>>>> example GFF3?
>>>>>>>>>>>  Thanks,
>>>>>>>>>>>  Carson
>>>>>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>>> Dear Carson,
>>>>>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>>>>>> short
>>>>>>>>>>>>  ESTs.
>>>>>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>>>>>> prediction(used as training dataset)and abinitio
>>>>>>>>>>>> gene-prediction).
>>>>>>>> Here
>>>>>>>>>>>> are the control parameters I am using with AED score set to
>>>>>>>>>>>> 0.5,
>>>>>>>>>>>>  however
>>>>>>>>>>>>  I
>>>>>>>>>>>> get predictions that includes the ones with AED score of 1.00
>>>>>>>>>>>> in
>>>>>>>>>>>>  resulting
>>>>>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3
>>>>>>>>>>>> of
>>>>>>>>>>>>  initial
>>>>>>>>>>>> gff3 file.
>>>>>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default
>>>>>>>>>>>>is
>>>>>>>>>>>>  eukaryotic
>>>>>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this
>>>>>>>>>>>> gff3
>>>>>>>>>>>> file
>>>>>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 =
>>>>>>>>>>>> yes,
>>>>>>>>>>>> 0
>>>>>>>>>>>> =
>>>>>>>> no
>>>>>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes,
>>>>>>>>>>>> 0
>>>>>>>>>>>> =
>>>>>>>>>>>> no
>>>>>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes,
>>>>>>>>0
>>>>>>>>=
>>>>>>>>>>>>  no
>>>>>>>>>>>> #-----MAKER Behavior Options
>>>>>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed
>>>>>>>>>>>> (bound
>>>>>>>>>>>> by
>>>>>>>> 0
>>>>>>>>>>>> and 1)
>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to
>>>>>>>>>>>>>be
>>>>>>>>>>>>> partial
>>>>>>>>>>>>> at
>>>>>>>>>>>>>  best.  You should seriously consider using mRNAseq to
>>>>>>>>>>>>>capture
>>>>>>>>>>>>> those
>>>>>>>> by
>>>>>>>>>>>>>  using maker's est_gff option to pass in results from
>>>>>>>>>>>>> cufflinks
>>>>>>>>>>>>>or
>>>>>>>>>>>>> trinity.
>>>>>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb
>>>>>>>>>>>>>in
>>>>>>>> size,
>>>>>>>>>>>>> just
>>>>>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>>>>>> maker_opts.ctl file.
>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>>>>>with
>>>>>>>> N50
>>>>>>>>>>>>>>  of
>>>>>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>>>>>> reason
>>>>>>>>>>>>>>  when
>>>>>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>>>>>> predicted
>>>>>>>> despite the model_gff file has few genes with scores less than
>>>>>>>> 0.75?
>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>>>>>> contig.
>>>>>>>>>>>>>> First
>>>>>>>>>>>>>>  it seems to be repeat rich with a very low gene density.
>>>>>>>>>>>>>> You
>>>>>>>>>>>>>> also
>>>>>>>>>>>>>> have
>>>>>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>>>>>> getting
>>>>>>>> many
>>>>>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>>>>>> models
>>>>>>>> that
>>>>>>>>>>>>>> are
>>>>>>>>>>>>>>  more than likely false positives or at the very least just
>>>>>>>>>>>>>>a
>>>>>>>>>>>>>> piece
>>>>>>>>>>>>>> of
>>>>>>>>>>>>>> a
>>>>>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>>>>>reason
>>>>>>>>>>>>>>  unless
>>>>>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).
>>>>>>>>>>>>>> Your
>>>>>>>>>>>>>>  protein
>>>>>>>>>>>>>> alignments also seem to be few and far between.  You
>>>>>>>>>>>>>>probably
>>>>>>>>>>>>>> need
>>>>>>>> to
>>>>>>>>>>>>>> add
>>>>>>>>>>>>>>  more proteins from a couple of related species, and you
>>>>>>>>>>>>>> might
>>>>>>>> consider
>>>>>>>>>>>>>> using protein2genome rather than est2genome as a predictor
>>>>>>>>>>>>>>if
>>>>>>>>>>>>>>you
>>>>>>>> are
>>>>>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>>>>>> produced
>>>>>>>> models
>>>>>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>>>>>with
>>>>>>>> the
>>>>>>>>>>>>>> AED_threshold with such limited protein support does create
>>>>>>>>>>>>>> an
>>>>>>>> artificial
>>>>>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>>>>>  How many contigs do you have in total and what is the N50
>>>>>>>>>>>>>> value
>>>>>>>> for
>>>>>>>>>>>>>> the
>>>>>>>>>>>>>> assembly? If you have a large number of very short contigs,
>>>>>>>>>>>>>>you
>>>>>>>>>>>>>> will
>>>>>>>>>>>>>>  get
>>>>>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>>>>>> contigs
>>>>>>>>>>>>>>  and
>>>>>>>>>>>>>> many contigs tend t be subtle rearrangements of other
>>>>>>>>>>>>>>contigs
>>>>>>>>>>>>>> just
>>>>>>>> assembled in a slightly different way (so you can get bits and
>>>>>>>> pieces
>>>>>>>>>>>>>>  of
>>>>>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>>>>>  confounding
>>>>>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>>>>>> would
>>>>>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>>>>>  completeness
>>>>>>>>>>>>>> as
>>>>>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>>>>>> statistics
>>>>>>>>>>>>>> produced
>>>>>>>>>>>>>>  is a percent of genes that are found complete (end to end)
>>>>>>>>>>>>>> vs
>>>>>>>> those
>>>>>>>>>>>>>>  that
>>>>>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend
>>>>>>>>>>>>>>to
>>>>>>>>>>>>>> be
>>>>>>>> shorter
>>>>>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>>>>>CEGMA
>>>>>>>> gives
>>>>>>>>>>>>>>  a
>>>>>>>>>>>>>> high partial percentage and a low complete percentage, then
>>>>>>>>>>>>>> this
>>>>>>>>>>>>>>  pattern
>>>>>>>>>>>>>> can be expected to be even more exaggerated for other genes
>>>>>>>>>>>>>> in
>>>>>>>>>>>>>> the
>>>>>>>> genome.
>>>>>>>>>>>>>>  If your genome is highly fragmented or proteins do not
>>>>>>>>>>>>>>align
>>>>>>>>>>>>>> well
>>>>>>>> then
>>>>>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>>>>>genomes
>>>>>>>> end
>>>>>>>>>>>>>>  up
>>>>>>>>>>>>>> having extremely fragmented assemblies (on the order of
>>>>>>>>>>>>>>100,000
>>>>>>>> contigs),
>>>>>>>>>>>>>>  and if they are distantly related to other annotated
>>>>>>>>>>>>>>species
>>>>>>>>>>>>>>few
>>>>>>>>>>>>>> proteins
>>>>>>>>>>>>>>  may align to the contigs because the introns in the
>>>>>>>>>>>>>>alignments
>>>>>>>> tend
>>>>>>>>>>>>>>  to
>>>>>>>>>>>>>> be
>>>>>>>>>>>>>>  so long and exons so short that it pushes down the
>>>>>>>>>>>>>> significance
>>>>>>>> scores
>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if
>>>>>>>>>>>>>> not
>>>>>>>> only
>>>>>>>>>>>>>>  way
>>>>>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>>>>score.
>>>>>>>> The
>>>>>>>>>>>>>> input gff3 file was provided to option model_pred(see
>>>>>>>>>>>>>> attached
>>>>>>>>>>>>>> file
>>>>>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>>>>>  least
>>>>>>>>>>>>>>  5
>>>>>>>>>>>>>> genes with AED score less than 0.75. However there were no
>>>>>>>>>>>>>> genes
>>>>>>>>>>>>>>  predicted
>>>>>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have
>>>>>>>>>>>>>> also
>>>>>>>>>>>>>> attached
>>>>>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if
>>>>>>>>>>>>>>you
>>>>>>>>>>>>>> just
>>>>>>>>>>>>>> want
>>>>>>>>>>>>>>  to restrict final gene models to close matches directly
>>>>>>>>>>>>>>within
>>>>>>>>>>>>>> maker.
>>>>>>>>>>>>>> On
>>>>>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>>>>>> training
>>>>>>>>>>>>>>  gene
>>>>>>>>>>>>>> predictors, use the maker2zff script for generating a
>>>>>>>>>>>>>> filtered
>>>>>>>>>>>>>>  dataset
>>>>>>>>>>>>>> for
>>>>>>>>>>>>>>  SNAP training.  There are a number of filters available.
>>>>>>>>>>>>>> Just
>>>>>>>> call
>>>>>>>>>>>>>>  the
>>>>>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence"
>>>>>>>>>>>>>><dence at genetics.utah.edu>
>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>> Hi Parul,
>>>>>>>>>>>>>> I think the way you described (with the maker_opts.ctl file)
>>>>>>>>>>>>>>is
>>>>>>>> how
>>>>>>>>>>>>>> you
>>>>>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>>>>>> Daniel
>>>>>>>>>>>>>> Daniel Ence
>>>>>>>>>>>>>> Graduate Student
>>>>>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>>>>>> University of Utah
>>>>>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>>>>>> ________________________________________
>>>>>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>>>>  Kudtarkar
>>>>>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>>>>>> Also, are there any other parameters that are required when
>>>>>>>> filtering
>>>>>>>>>>>>>> based on AED score?
>>>>>>>>>>>>>>  Hello Carson,
>>>>>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>>>>>> models
>>>>>>>>>>>>>> at
>>>>>>>>>>>>>> specific AED score.
>>>>>>>>>>>>>>  Alternatively if I were to do this within maker with
>>>>>>>>>>>>>>regards
>>>>>>>> to
>>>>>>>>>>>>>> parameters
>>>>>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>>> genes
>>>>>>>>>>>>>> gff3
>>>>>>>>>>>>>>  file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>>>threshold?
>>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best
>>>>>>>>>>>>>>and
>>>>>>>> 1
>>>>>>>>>>>>>>  is
>>>>>>>>>>>>>> worst
>>>>>>>>>>>>>>  as
>>>>>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>>>>>> parameter
>>>>>>>>>>>>>> to
>>>>>>>>>>>>>>  require better matching to the evidence by setting it
>>>>>>>>>>>>>>closer
>>>>>>>> to
>>>>>>>>>>>>>> 0.
>>>>>>>>>>>>>> You
>>>>>>>>>>>>>>  can
>>>>>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>>>>>> your
>>>>>>>>>>>>>> calls
>>>>>>>>>>>>>> may
>>>>>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>>>>>  --Carson
>>>>>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>> Dear Maker community,
>>>>>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>>  based
>>>>>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>>>>>Augustus
>>>>>>>> predictions, followed by boot-strapping. I would typically expect
>>>>>>>> 20-30K
>>>>>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>>  indicating
>>>>>>>>>>>>>>  too
>>>>>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>>>>>> predication/script to retain predictions with AED score 1
>>>>>>>>>>>>>>and
>>>>>>>>>>>>>> if
>>>>>>>>>>>>>> yes
>>>>>>>>>>>>>> how
>>>>>>>>>>>>>> to go about this?
>>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yande
>>>>>>>>>>>>>>ll
>>>>>>>> -l
>>>>>>>>>>>>>> ab
>>>>>>>>>>>>>> .o
>>>>>>>>>>>>>> rg
>>>>>>>>>>>>>>  --
>>>>>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yande
>>>>>>>>>>>>>>ll
>>>>>>>>>>>>>>-l
>>>>>>>>>>>>>>a
>>>>>>>> b.
>>>>>>>>>>>>>> or
>>>>>>>>>>>>>> g
>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yande
>>>>>>>>>>>>>>ll
>>>>>>>>>>>>>>-l
>>>>>>>>>>>>>>a
>>>>>>>> b.
>>>>>>>>>>>>>> or
>>>>>>>>>>>>>> g
>>>>>>>>>>>>>>  _______________________________________________
>>>>>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yande
>>>>>>>>>>>>>>ll
>>>>>>>>>>>>>>-l
>>>>>>>>>>>>>>ab
>>>>>>>> .o
>>>>>>>>>>>>>> rg
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>>
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>>>>
>>>>>
>>>>>
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>>>
>>
>>
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>





From indu2287 at gmail.com  Wed Dec 19 22:33:33 2012
From: indu2287 at gmail.com (indu khatri)
Date: Thu, 20 Dec 2012 11:03:33 +0530
Subject: [maker-devel] query
Message-ID: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>

 Hello Maker-devel
    Thanks for adding me to the list. I am new to this field. I have a
query regarding maker annotation.
    I have assembled a fungal Genome with 1590 contigs and was trying to
    annotate it using MAKER pipeline. I only have paired end WGS sequence
from
    Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
    any transcriptome data. I am using ESTs of a closer species for
validation
    and similarly the protein sequences. I have started annotation but the
    problem is the pipeline gets stuck to the first contig on blastx step
and
    doesn't move further. I could not make out the problem. Can you please
help
    me out of this.

Thanks and regards

-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India
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From dence at genetics.utah.edu  Thu Dec 20 09:53:59 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Thu, 20 Dec 2012 16:53:59 +0000
Subject: [maker-devel] query
In-Reply-To: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49939@mxb2.hg.genetics.utah.edu>

Hi Indu, Can you send you some of the error output that maker is printing? Blastx is used at a couple of different steps in maker's pipeline, so it is hard to tell without more information. You might also think about using the swiss prot database as a source for protein sequences.

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: maker-devel-bounces at yandell-lab.org [maker-devel-bounces at yandell-lab.org] on behalf of indu khatri [indu2287 at gmail.com]
Sent: Wednesday, December 19, 2012 10:33 PM
To: maker-devel at yandell-lab.org
Subject: [maker-devel] query

 Hello Maker-devel
    Thanks for adding me to the list. I am new to this field. I have a query regarding maker annotation.
    I have assembled a fungal Genome with 1590 contigs and was trying to
    annotate it using MAKER pipeline. I only have paired end WGS sequence from
    Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
    any transcriptome data. I am using ESTs of a closer species for validation
    and similarly the protein sequences. I have started annotation but the
    problem is the pipeline gets stuck to the first contig on blastx step and
    doesn't move further. I could not make out the problem. Can you please help
    me out of this.

Thanks and regards

--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

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From barry.moore at genetics.utah.edu  Thu Dec 20 10:20:31 2012
From: barry.moore at genetics.utah.edu (Barry Moore)
Date: Thu, 20 Dec 2012 10:20:31 -0700
Subject: [maker-devel] query
In-Reply-To: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
Message-ID: <15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>

Hi Indu,

The error output as Daniel suggested would be great and also a bit more detail on the problem.  Is it stalled on a long contig - how long?  How long has it been stalled for?  How many cpus are you running?  Are you running under MPI?  How big is the protein evidence file?  If you're using the altest function for your ESTs then it's running tblastx which is up to 10X slower than blastn with regular ESTs, is it possible that you're stuck on tblastx?

Finally, it can help if you isolate the problem a bit.  Can you run successfully on any of your contigs by running single contigs in your fasta file?  If it's stalled on a large contig, iteratively cut it in half and see if the problem isolates to one part of the contig.

B

On Dec 19, 2012, at 10:33 PM, indu khatri wrote:

>  Hello Maker-devel
>     Thanks for adding me to the list. I am new to this field. I have a query regarding maker annotation.
>     I have assembled a fungal Genome with 1590 contigs and was trying to
>     annotate it using MAKER pipeline. I only have paired end WGS sequence from
>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
>     any transcriptome data. I am using ESTs of a closer species for validation
>     and similarly the protein sequences. I have started annotation but the
>     problem is the pipeline gets stuck to the first contig on blastx step and
>     doesn't move further. I could not make out the problem. Can you please help
>     me out of this.
> 
> Thanks and regards
> 
> -- 
> Indu Khatri
> PhD Research Fellow,
> C/o Dr. Srikrishna Subramanian
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
> 
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

Barry Moore
Research Scientist
Dept. of Human Genetics
University of Utah
Salt Lake City, UT 84112
--------------------------------------------
(801) 585-3543




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From ranjani at uga.edu  Thu Dec 20 10:21:45 2012
From: ranjani at uga.edu (Sivaranjani Namasivayam)
Date: Thu, 20 Dec 2012 17:21:45 +0000
Subject: [maker-devel] MAKER annotations
Message-ID: <A21F03FBB429334EB4D450CC75E8CBF34B947EB4@CH1PRD0210MB384.namprd02.prod.outlook.com>

Hi,

I have a query regarding MAKER predictions. I made a a first round of predictions with RNAseq data from 454 and Illumina as EST evidence and proteins sequences from related organisms as proteins evidence. I also used augustus trained on a closely related organism as the ab-initio gene predictor.
I got ~4000 maker annotations (I expect around ~10,000 genes)

I used the annotations with AED score of 0 to train SNAP and used the HMM when retraining MAKER. This time I got ~8,000 genes but when I examined some annotations they appeared to be have worsened when compared to the initial predictions: that is, genes were getting split, UTRs were not annotated and the original predictions were modified but not for better.

Would you have any suggestions on how I can improve the annotations.

Also, is there a way to tell MAKER to produce gene models for all the cufflinks assembled transcripts(that is, for the data set I provide as EST evidence).

Thanks,
Ranjani
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From carsonhh at gmail.com  Thu Dec 20 11:16:42 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 20 Dec 2012 13:16:42 -0500
Subject: [maker-devel] MAKER annotations
In-Reply-To: <A21F03FBB429334EB4D450CC75E8CBF34B947EB4@CH1PRD0210MB384.namprd02.prod.outlook.com>
Message-ID: <CCF8B883.1724D%carsonhh@gmail.com>

Don't use an AED filter of 0.  It's too strict and will introduces certain
artifacts like partial genes.  Lower than 0.5 is probably sufficient for
training.  Also if in your first round you use Augustus, and the second
round you used SNAP instead, you may get poorer annotations because Augustus
is performing better than SNAP.  SNAP might need more training as well,
especially if the low AED filter introduced partial gene artifacts.    What
kind of organism are you annotating?

--Carson


From:  Sivaranjani Namasivayam <ranjani at uga.edu>
Date:  Thursday, 20 December, 2012 12:21 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  [maker-devel] MAKER annotations

Hi,

I have a query regarding MAKER predictions. I made a a first round of
predictions with RNAseq data from 454 and Illumina as EST evidence and
proteins sequences from related organisms as proteins evidence. I also used
augustus trained on a closely related organism as the ab-initio gene
predictor.
I got ~4000 maker annotations (I expect around ~10,000 genes)

I used the annotations with AED score of 0 to train SNAP and used the HMM
when retraining MAKER. This time I got ~8,000 genes but when I examined some
annotations they appeared to be have worsened when compared to the initial
predictions: that is, genes were getting split, UTRs were not annotated and
the original predictions were modified but not for better.

Would you have any suggestions on how I can improve the annotations.

Also, is there a way to tell MAKER to produce gene models for all the
cufflinks assembled transcripts(that is, for the data set I provide as EST
evidence).

Thanks,
Ranjani
_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From indu2287 at gmail.com  Thu Dec 20 12:41:59 2012
From: indu2287 at gmail.com (indu khatri)
Date: Thu, 20 Dec 2012 11:41:59 -0800
Subject: [maker-devel] Fwd:  query
In-Reply-To: <CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
	<15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>
	<CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>
Message-ID: <CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>

Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species
I chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <barry.moore at genetics.utah.edu
> wrote:

> Hi Indu,
>
> The error output as Daniel suggested would be great and also a bit more
> detail on the problem.  Is it stalled on a long contig - how long?  How
> long has it been stalled for?  How many cpus are you running?  Are you
> running under MPI?  How big is the protein evidence file?  If you're using
> the altest function for your ESTs then it's running tblastx which is up to
> 10X slower than blastn with regular ESTs, is it possible that you're stuck
> on tblastx?
>
> Finally, it can help if you isolate the problem a bit.  Can you run
> successfully on any of your contigs by running single contigs in your fasta
> file?  If it's stalled on a large contig, iteratively cut it in half and
> see if the problem isolates to one part of the contig.
>
> B
>
> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
>
>  Hello Maker-devel
>     Thanks for adding me to the list. I am new to this field. I have a
> query regarding maker annotation.
>     I have assembled a fungal Genome with 1590 contigs and was trying to
>     annotate it using MAKER pipeline. I only have paired end WGS sequence
> from
>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont
> have
>     any transcriptome data. I am using ESTs of a closer species for
> validation
>     and similarly the protein sequences. I have started annotation but the
>     problem is the pipeline gets stuck to the first contig on blastx step
> and
>     doesn't move further. I could not make out the problem. Can you please
> help
>     me out of this.
>
> Thanks and regards
>
> --
>
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
> Khatri
> PhD Research Fellow,
> C/o Dr. Srikrishna Subramanian
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
>
>  _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>
>  Barry Moore
> Research Scientist
> Dept. of Human Genetics
> University of Utah
> Salt Lake City, UT 84112
> --------------------------------------------
> (801) 585-3543
>
>
>
>
>


-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India
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From carsonhh at gmail.com  Thu Dec 20 15:04:43 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 20 Dec 2012 17:04:43 -0500
Subject: [maker-devel] MAKER annotations
In-Reply-To: <A21F03FBB429334EB4D450CC75E8CBF34B947ECF@CH1PRD0210MB384.namprd02.prod.outlook.com>
Message-ID: <CCF8F513.172A6%carsonhh@gmail.com>

If your organism is biased toward short genes with few introns, you might
also want to try something like GeneMark.  Not all gene predictors work well
on all kinds of gene structures, so I often will run multiple and then drop
those that perform poorly.

Thanks,
Carson


From:  Sivaranjani Namasivayam <ranjani at uga.edu>
Date:  Thursday, 20 December, 2012 1:33 PM
To:  Carson Holt <carsonhh at gmail.com>
Subject:  RE: [maker-devel] MAKER annotations

I am annotating a Apicomplexan organism.  When I retrained I used both SNAP
and Augustus. I will lower the AED score to 0.5 and check if that improves
the results.
Thanks for suggestion!

Ranjani

From: Carson Holt [carsonhh at gmail.com]
Sent: Thursday, December 20, 2012 1:16 PM
To: Sivaranjani Namasivayam; maker-devel at yandell-lab.org
Subject: Re: [maker-devel] MAKER annotations

Don't use an AED filter of 0.  It's too strict and will introduces certain
artifacts like partial genes.  Lower than 0.5 is probably sufficient for
training.  Also if in your first round you use Augustus, and the second
round you used SNAP instead, you may get poorer annotations because Augustus
is performing better than SNAP.  SNAP might need more training as well,
especially if the low AED filter introduced partial gene artifacts.    What
kind of organism are you annotating?

--Carson


From: Sivaranjani Namasivayam <ranjani at uga.edu>
Date: Thursday, 20 December, 2012 12:21 PM
To: "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject: [maker-devel] MAKER annotations

Hi,

I have a query regarding MAKER predictions. I made a a first round of
predictions with RNAseq data from 454 and Illumina as EST evidence and
proteins sequences from related organisms as proteins evidence. I also used
augustus trained on a closely related organism as the ab-initio gene
predictor.
I got ~4000 maker annotations (I expect around ~10,000 genes)

I used the annotations with AED score of 0 to train SNAP and used the HMM
when retraining MAKER. This time I got ~8,000 genes but when I examined some
annotations they appeared to be have worsened when compared to the initial
predictions: that is, genes were getting split, UTRs were not annotated and
the original predictions were modified but not for better.

Would you have any suggestions on how I can improve the annotations.

Also, is there a way to tell MAKER to produce gene models for all the
cufflinks assembled transcripts(that is, for the data set I provide as EST
evidence).

Thanks,
Ranjani
_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org


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From kapeelc at gmail.com  Thu Dec 20 16:00:10 2012
From: kapeelc at gmail.com (Kapeel Chougule)
Date: Thu, 20 Dec 2012 16:00:10 -0700
Subject: [maker-devel] AED eAED QI scores??
Message-ID: <CA+DOtediwDrsyvibU_B=av=knpeQRxVMjEM8_Xhq_a7rd2+NXQ@mail.gmail.com>

Hello,

I ran MAKER 2.27 using the option pred_stats=1 in the control file. In the
last column of the maker output gff file I have the
following annotation quality measures.

AED:0.41 eAED:0.41 QI:0|0.5|0.4|1|1|1|5|0|278

My understanding is that with AED score 0 your annotations are in prefect
agreement with the evidence data sets and with AED 1,vice versa.

 I would like to know what is the difference between AED against eAED
score. And how do I interpret the QI cloumn?

Thank you,

-- 
*

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719
www.genome.arizona.edu
*
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From dence at genetics.utah.edu  Fri Dec 21 10:08:31 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Fri, 21 Dec 2012 17:08:31 +0000
Subject: [maker-devel] AED eAED QI scores??
In-Reply-To: <CA+DOtediwDrsyvibU_B=av=knpeQRxVMjEM8_Xhq_a7rd2+NXQ@mail.gmail.com>
References: <CA+DOtediwDrsyvibU_B=av=knpeQRxVMjEM8_Xhq_a7rd2+NXQ@mail.gmail.com>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BC2@mxb2.hg.genetics.utah.edu>

Hi Kapeel, the QI columns are explained in the first maker paper (Cantarel and Yandell, Genome Research 2008).

>From pg. 189,

Table 2. Maker quality index summary

Length of the 5 UTR

Fraction of splice sites confirmed by an EST alignment

Fraction of exons that overlap an EST alignment

Fraction of exons that overlap EST or Protein alignments

Fraction of splice sites confirmed by a SNAP prediction

Fraction of exons that overlap a SNAP prediction

Number of exons in the mRNA

Length of the 3 UTR

Length of the protein sequence produced by the mRNA


eAED is the the AED edit distance at an exon level, not base pair level like normal AED.


Thanks,

Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: maker-devel-bounces at yandell-lab.org [maker-devel-bounces at yandell-lab.org] on behalf of Kapeel Chougule [kapeelc at gmail.com]
Sent: Thursday, December 20, 2012 4:00 PM
To: maker-devel at yandell-lab.org
Subject: [maker-devel] AED eAED QI scores??

Hello,

I ran MAKER 2.27 using the option pred_stats=1 in the control file. In the last column of the maker output gff file I have the following annotation quality measures.

AED:0.41 eAED:0.41 QI:0|0.5|0.4|1|1|1|5|0|278

My understanding is that with AED score 0 your annotations are in prefect agreement with the evidence data sets and with AED 1,vice versa.

 I would like to know what is the difference between AED against eAED score. And how do I interpret the QI cloumn?

Thank you,

--

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719
www.genome.arizona.edu<http://www.genome.arizona.edu>
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From dence at genetics.utah.edu  Fri Dec 21 10:23:24 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Fri, 21 Dec 2012 17:23:24 +0000
Subject: [maker-devel] query
In-Reply-To: <CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
	<15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>
	<CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>,
	<CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>

Hi Indu,

I'm going to echo Barry's request for more details about this problem too. Does augustus fail on more than one contig or does it fail repeatedly on the same contig? If its only contig, how big is that contig and is it possibly all masked out by repeatmasker? If you exclude that one contig, do the rest run successfully?  What are you using to mask the repeats in the genome? Which augustus model are you using, and how did you choose that model?

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: indu khatri [indu2287 at gmail.com]
Sent: Thursday, December 20, 2012 12:41 PM
To: maker-devel at yandell-lab.org
Cc: Barry Moore; Daniel Ence
Subject: Fwd: [maker-devel] query


Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species I chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <barry.moore at genetics.utah.edu<mailto:barry.moore at genetics.utah.edu>> wrote:
Hi Indu,

The error output as Daniel suggested would be great and also a bit more detail on the problem.  Is it stalled on a long contig - how long?  How long has it been stalled for?  How many cpus are you running?  Are you running under MPI?  How big is the protein evidence file?  If you're using the altest function for your ESTs then it's running tblastx which is up to 10X slower than blastn with regular ESTs, is it possible that you're stuck on tblastx?

Finally, it can help if you isolate the problem a bit.  Can you run successfully on any of your contigs by running single contigs in your fasta file?  If it's stalled on a large contig, iteratively cut it in half and see if the problem isolates to one part of the contig.

B

On Dec 19, 2012, at 10:33 PM, indu khatri wrote:

 Hello Maker-devel
    Thanks for adding me to the list. I am new to this field. I have a query regarding maker annotation.
    I have assembled a fungal Genome with 1590 contigs and was trying to
    annotate it using MAKER pipeline. I only have paired end WGS sequence from
    Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
    any transcriptome data. I am using ESTs of a closer species for validation
    and similarly the protein sequences. I have started annotation but the
    problem is the pipeline gets stuck to the first contig on blastx step and
    doesn't move further. I could not make out the problem. Can you please help
    me out of this.

Thanks and regards

--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

_______________________________________________
maker-devel mailing list
maker-devel at box290.bluehost.com<mailto:maker-devel at box290.bluehost.com>
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

Barry Moore
Research Scientist
Dept. of Human Genetics
University of Utah
Salt Lake City, UT 84112
--------------------------------------------
(801) 585-3543







--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India

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From carsonhh at gmail.com  Fri Dec 21 10:25:13 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 21 Dec 2012 12:25:13 -0500
Subject: [maker-devel] AED eAED QI scores??
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BC2@mxb2.hg.genetics.utah.edu>
Message-ID: <CCFA01EA.172C9%carsonhh@gmail.com>

eAED is a little more than that.  It is still at a base pair level, but it
uses exon inference from mRNAseq and in addition has a protein evidence
overlap correction for each exon.  Sometimes the overlapping protein reading
frame doesn't perfectly match the entire model (exonerate for example can
shift the reading frames by 1 in the middle to get a better alignment and
BLAST can't).  This means that just because you have physical overlap it may
be meaningless overlap.  eAED corrects for this.  Also it can use inferred
evidence from mRNAseq.  For example if you have mRNAseq data that confirm
both ends of an exon around the splice site, but not the middle of the exon,
then there is probably enough correlated data for MAKER to confidently infer
the middle of the exon.  It then counts those base pairs as confirmed even
though they don't physically overlap.  This is common with mRNAseq data as
it can taper off in the middle of long exons or won't align correctly around
short exons.  In both cases the middle gets left out.  MAKER uses
information from the reading frame and the ab initio predictors to infer if
those regions.

Most of the time eAED and AED will be identical.  eAED can sometimes be
higher for certain mRNAseq alignments and lower for what are apparent
spurious protein alignments.

--Carson


From:  Daniel Ence <dence at genetics.utah.edu>
Date:  Friday, 21 December, 2012 12:08 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] AED eAED QI scores??

Hi Kapeel, the QI columns are explained in the first maker paper (Cantarel
and Yandell, Genome Research 2008).

>From pg. 189,
Table 2. Maker quality index summary

Length of the 5 UTR

Fraction of splice sites confirmed by an EST alignment

Fraction of exons that overlap an EST alignment

Fraction of exons that overlap EST or Protein alignments

Fraction of splice sites confirmed by a SNAP prediction

Fraction of exons that overlap a SNAP prediction

Number of exons in the mRNA

Length of the 3 UTR

Length of the protein sequence produced by the mRNA



eAED is the the AED edit distance at an exon level, not base pair level like
normal AED. 



Thanks,

Daniel 


Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

From: maker-devel-bounces at yandell-lab.org
[maker-devel-bounces at yandell-lab.org] on behalf of Kapeel Chougule
[kapeelc at gmail.com]
Sent: Thursday, December 20, 2012 4:00 PM
To: maker-devel at yandell-lab.org
Subject: [maker-devel] AED eAED QI scores??

Hello, 

I ran MAKER 2.27 using the option pred_stats=1 in the control file. In the
last column of the maker output gff file I have the following annotation
quality measures.

AED:0.41 eAED:0.41 QI:0|0.5|0.4|1|1|1|5|0|278

My understanding is that with AED score 0 your annotations are in prefect
agreement with the evidence data sets and with AED 1,vice versa.

 I would like to know what is the difference between AED against eAED score.
And how do I interpret the QI cloumn?

Thank you,

-- 

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719   
www.genome.arizona.edu <http://www.genome.arizona.edu>
_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From carsonhh at gmail.com  Fri Dec 21 10:31:32 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 21 Dec 2012 12:31:32 -0500
Subject: [maker-devel] query
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>
Message-ID: <CCFA05D3.172F3%carsonhh@gmail.com>

Also try and capture the entire STDERR to a file for the failure, and attach
it to the e-mail.  The failure indicates that augustus itself failed.
Normally augustus should have provided it's own error message before the
"ERROR: Augustus failed" message.  If not it means that augusuts is failing
to even initialize.  If you send the whole STDERR we can find command line
MAKER used to run augustus, and we can let you try and execute the exact
same command line directly in a terminal (outside of MAKER) to see what
augustus does.

Thanks,
Carson



From:  Daniel Ence <dence at genetics.utah.edu>
Date:  Friday, 21 December, 2012 12:23 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] query

Hi Indu, 

I'm going to echo Barry's request for more details about this problem too.
Does augustus fail on more than one contig or does it fail repeatedly on the
same contig? If its only contig, how big is that contig and is it possibly
all masked out by repeatmasker? If you exclude that one contig, do the rest
run successfully?  What are you using to mask the repeats in the genome?
Which augustus model are you using, and how did you choose that model?

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

From: indu khatri [indu2287 at gmail.com]
Sent: Thursday, December 20, 2012 12:41 PM
To: maker-devel at yandell-lab.org
Cc: Barry Moore; Daniel Ence
Subject: Fwd: [maker-devel] query


Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species I
chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore
<barry.moore at genetics.utah.edu> wrote:
> Hi Indu, 
> 
> The error output as Daniel suggested would be great and also a bit more detail
> on the problem.  Is it stalled on a long contig - how long?  How long has it
> been stalled for?  How many cpus are you running?  Are you running under MPI?
> How big is the protein evidence file?  If you're using the altest function for
> your ESTs then it's running tblastx which is up to 10X slower than blastn with
> regular ESTs, is it possible that you're stuck on tblastx?
> 
> Finally, it can help if you isolate the problem a bit.  Can you run
> successfully on any of your contigs by running single contigs in your fasta
> file?  If it's stalled on a large contig, iteratively cut it in half and see
> if the problem isolates to one part of the contig.
> 
> B
> 
> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
> 
>>  Hello Maker-devel
>>     Thanks for adding me to the list. I am new to this field. I have a query
>> regarding maker annotation.
>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>     annotate it using MAKER pipeline. I only have paired end WGS sequence
>> from
>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
>>     any transcriptome data. I am using ESTs of a closer species for
>> validation
>>     and similarly the protein sequences. I have started annotation but the
>>     problem is the pipeline gets stuck to the first contig on blastx step and
>>     doesn't move further. I could not make out the problem. Can you please
>> help
>>     me out of this.
>> 
>> Thanks and regards
>> 
>> -- 
>>  
>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6
>> a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
>> PhD Research Fellow,
>> C/o Dr. Srikrishna Subramanian
>> Institute of Microbial Technology,
>> Chandigarh-160036,
>> India
>> 
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
> 
> Barry Moore
> Research Scientist
> Dept. of Human Genetics
> University of Utah
> Salt Lake City, UT 84112
> --------------------------------------------
> (801) 585-3543
> 
> 
> 
> 



-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India

_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From carsonhh at gmail.com  Fri Dec 21 10:40:10 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 21 Dec 2012 12:40:10 -0500
Subject: [maker-devel] query
In-Reply-To: <CCFA0734.17301%carsonhh@gmail.com>
Message-ID: <CCFA0869.17306%carsonhh@gmail.com>

In addition my last e-mailed explanation of eAED, here is where you can get
an explanation of how MAKER uses and calculates AED -->
http://www.biomedcentral.com/1471-2105/12/491
The original AED concept was borrowed from here  -->
http://www.biomedcentral.com/1471-2105/10/67

Thanks,
Carson

From:  Carson Holt <carsonhh at gmail.com>
Date:  Friday, 21 December, 2012 12:31 PM
To:  Daniel Ence <dence at genetics.utah.edu>, "maker-devel at yandell-lab.org"
<maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] query

Also try and capture the entire STDERR to a file for the failure, and attach
it to the e-mail.  The failure indicates that augustus itself failed.
Normally augustus should have provided it's own error message before the
"ERROR: Augustus failed" message.  If not it means that augusuts is failing
to even initialize.  If you send the whole STDERR we can find command line
MAKER used to run augustus, and we can let you try and execute the exact
same command line directly in a terminal (outside of MAKER) to see what
augustus does.

Thanks,
Carson



From:  Daniel Ence <dence at genetics.utah.edu>
Date:  Friday, 21 December, 2012 12:23 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] query

Hi Indu, 

I'm going to echo Barry's request for more details about this problem too.
Does augustus fail on more than one contig or does it fail repeatedly on the
same contig? If its only contig, how big is that contig and is it possibly
all masked out by repeatmasker? If you exclude that one contig, do the rest
run successfully?  What are you using to mask the repeats in the genome?
Which augustus model are you using, and how did you choose that model?

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

From: indu khatri [indu2287 at gmail.com]
Sent: Thursday, December 20, 2012 12:41 PM
To: maker-devel at yandell-lab.org
Cc: Barry Moore; Daniel Ence
Subject: Fwd: [maker-devel] query


Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species I
chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore
<barry.moore at genetics.utah.edu> wrote:
> Hi Indu, 
> 
> The error output as Daniel suggested would be great and also a bit more detail
> on the problem.  Is it stalled on a long contig - how long?  How long has it
> been stalled for?  How many cpus are you running?  Are you running under MPI?
> How big is the protein evidence file?  If you're using the altest function for
> your ESTs then it's running tblastx which is up to 10X slower than blastn with
> regular ESTs, is it possible that you're stuck on tblastx?
> 
> Finally, it can help if you isolate the problem a bit.  Can you run
> successfully on any of your contigs by running single contigs in your fasta
> file?  If it's stalled on a large contig, iteratively cut it in half and see
> if the problem isolates to one part of the contig.
> 
> B
> 
> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
> 
>>  Hello Maker-devel
>>     Thanks for adding me to the list. I am new to this field. I have a query
>> regarding maker annotation.
>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>     annotate it using MAKER pipeline. I only have paired end WGS sequence
>> from
>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
>>     any transcriptome data. I am using ESTs of a closer species for
>> validation
>>     and similarly the protein sequences. I have started annotation but the
>>     problem is the pipeline gets stuck to the first contig on blastx step and
>>     doesn't move further. I could not make out the problem. Can you please
>> help
>>     me out of this.
>> 
>> Thanks and regards
>> 
>> -- 
>>  
>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6
>> a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
>> PhD Research Fellow,
>> C/o Dr. Srikrishna Subramanian
>> Institute of Microbial Technology,
>> Chandigarh-160036,
>> India
>> 
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
> 
> Barry Moore
> Research Scientist
> Dept. of Human Genetics
> University of Utah
> Salt Lake City, UT 84112
> --------------------------------------------
> (801) 585-3543
> 
> 
> 
> 



-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India

_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/m
aker-devel_yandell-lab.org


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From indu2287 at gmail.com  Fri Dec 21 10:58:31 2012
From: indu2287 at gmail.com (indu khatri)
Date: Fri, 21 Dec 2012 09:58:31 -0800
Subject: [maker-devel] query
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
	<15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>
	<CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>
	<CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>
	<F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>
Message-ID: <CAFCapZvXFg3TdU8uEd0szU9inLCrNjujH36tEm55DO=1rKR1mw@mail.gmail.com>

Hii Daniel

It was failing for 1 contig only. The contig length is approx 1.5 Mb.
Excluding that contig the run was successful. I am using RepeatMasker
libraries only for masking the sequences. I used Fusarium graminearum
species as Augustus model species.

I have one more query about Maker annotation results. Only augustus as gene
predictor can be a good predictor for annotations or I have to retrain it
using the previous results from first runs of MAKER in order to get
validated gene models.

Thanks.


On Fri, Dec 21, 2012 at 9:23 AM, Daniel Ence <dence at genetics.utah.edu>wrote:

>  Hi Indu,
>
>  I'm going to echo Barry's request for more details about this problem
> too. Does augustus fail on more than one contig or does it fail repeatedly
> on the same contig? If its only contig, how big is that contig and is it
> possibly all masked out by repeatmasker? If you exclude that one contig, do
> the rest run successfully?  What are you using to mask the repeats in the
> genome? Which augustus model are you using, and how did you choose that
> model?
>
>  Thanks,
> Daniel
>
>  Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
>
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
>   ------------------------------
> *From:* indu khatri [indu2287 at gmail.com]
> *Sent:* Thursday, December 20, 2012 12:41 PM
> *To:* maker-devel at yandell-lab.org
> *Cc:* Barry Moore; Daniel Ence
> *Subject:* Fwd: [maker-devel] query
>
>
> Thanks Daniel and Barry for your reply.
>
> I have sorted out that problem. It was due to very distant homolog species
> I chose for training.
>
> But, I am still getting some errors while running MAKER.
> ERROR: Augustus failed
> ERROR: Failed while preparing ab-inits
> ERROR: Chunk failed at level:4, tier_type:0
> FAILED CONTIG
>
> Can you please tell me what is the possible reason for this error?
>
> Thanks in advance.
>
>
>
> On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <
> barry.moore at genetics.utah.edu> wrote:
>
>> Hi Indu,
>>
>>  The error output as Daniel suggested would be great and also a bit more
>> detail on the problem.  Is it stalled on a long contig - how long?  How
>> long has it been stalled for?  How many cpus are you running?  Are you
>> running under MPI?  How big is the protein evidence file?  If you're using
>> the altest function for your ESTs then it's running tblastx which is up to
>> 10X slower than blastn with regular ESTs, is it possible that you're stuck
>> on tblastx?
>>
>>  Finally, it can help if you isolate the problem a bit.  Can you run
>> successfully on any of your contigs by running single contigs in your fasta
>> file?  If it's stalled on a large contig, iteratively cut it in half and
>> see if the problem isolates to one part of the contig.
>>
>>  B
>>
>>  On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
>>
>>     Hello Maker-devel
>>     Thanks for adding me to the list. I am new to this field. I have a
>> query regarding maker annotation.
>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>     annotate it using MAKER pipeline. I only have paired end WGS sequence
>> from
>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont
>> have
>>     any transcriptome data. I am using ESTs of a closer species for
>> validation
>>     and similarly the protein sequences. I have started annotation but the
>>     problem is the pipeline gets stuck to the first contig on blastx step
>> and
>>     doesn't move further. I could not make out the problem. Can you
>> please help
>>     me out of this.
>>
>>  Thanks and regards
>>
>>  --
>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
>> Khatri
>> PhD Research Fellow,
>> C/o Dr. Srikrishna Subramanian
>> Institute of Microbial Technology,
>> Chandigarh-160036,
>> India
>>
>>    _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>>
>>  Barry Moore
>> Research Scientist
>> Dept. of Human Genetics
>> University of Utah
>> Salt Lake City, UT 84112
>> --------------------------------------------
>> (801) 585-3543
>>
>>
>>
>>
>>
>
>
>  --
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
> Khatri
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
>
>
>
>
>  --
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
> Khatri
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>


-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India
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From dence at genetics.utah.edu  Fri Dec 21 12:07:40 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Fri, 21 Dec 2012 19:07:40 +0000
Subject: [maker-devel] query
In-Reply-To: <CAFCapZvXFg3TdU8uEd0szU9inLCrNjujH36tEm55DO=1rKR1mw@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
	<15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>
	<CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>
	<CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>
	<F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>,
	<CAFCapZvXFg3TdU8uEd0szU9inLCrNjujH36tEm55DO=1rKR1mw@mail.gmail.com>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49C08@mxb2.hg.genetics.utah.edu>

Hi Indu, Can you send the error output that Carson mentioned? Using a closely related augustus model for your organism can be a good approach, if that's the best you can do. Training augustus for your organism would be better, but you don't have to do it.

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: indu khatri [indu2287 at gmail.com]
Sent: Friday, December 21, 2012 10:58 AM
To: Daniel Ence
Cc: maker-devel at yandell-lab.org
Subject: Re: [maker-devel] query

Hii Daniel

It was failing for 1 contig only. The contig length is approx 1.5 Mb. Excluding that contig the run was successful. I am using RepeatMasker libraries only for masking the sequences. I used Fusarium graminearum species as Augustus model species.

I have one more query about Maker annotation results. Only augustus as gene predictor can be a good predictor for annotations or I have to retrain it using the previous results from first runs of MAKER in order to get validated gene models.

Thanks.


On Fri, Dec 21, 2012 at 9:23 AM, Daniel Ence <dence at genetics.utah.edu<mailto:dence at genetics.utah.edu>> wrote:
Hi Indu,

I'm going to echo Barry's request for more details about this problem too. Does augustus fail on more than one contig or does it fail repeatedly on the same contig? If its only contig, how big is that contig and is it possibly all masked out by repeatmasker? If you exclude that one contig, do the rest run successfully?  What are you using to mask the repeats in the genome? Which augustus model are you using, and how did you choose that model?

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah

15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: indu khatri [indu2287 at gmail.com<mailto:indu2287 at gmail.com>]
Sent: Thursday, December 20, 2012 12:41 PM
To: maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org>
Cc: Barry Moore; Daniel Ence
Subject: Fwd: [maker-devel] query


Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species I chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <barry.moore at genetics.utah.edu<mailto:barry.moore at genetics.utah.edu>> wrote:
Hi Indu,

The error output as Daniel suggested would be great and also a bit more detail on the problem.  Is it stalled on a long contig - how long?  How long has it been stalled for?  How many cpus are you running?  Are you running under MPI?  How big is the protein evidence file?  If you're using the altest function for your ESTs then it's running tblastx which is up to 10X slower than blastn with regular ESTs, is it possible that you're stuck on tblastx?

Finally, it can help if you isolate the problem a bit.  Can you run successfully on any of your contigs by running single contigs in your fasta file?  If it's stalled on a large contig, iteratively cut it in half and see if the problem isolates to one part of the contig.

B

On Dec 19, 2012, at 10:33 PM, indu khatri wrote:

 Hello Maker-devel
    Thanks for adding me to the list. I am new to this field. I have a query regarding maker annotation.
    I have assembled a fungal Genome with 1590 contigs and was trying to
    annotate it using MAKER pipeline. I only have paired end WGS sequence from
    Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
    any transcriptome data. I am using ESTs of a closer species for validation
    and similarly the protein sequences. I have started annotation but the
    problem is the pipeline gets stuck to the first contig on blastx step and
    doesn't move further. I could not make out the problem. Can you please help
    me out of this.

Thanks and regards

--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

_______________________________________________
maker-devel mailing list
maker-devel at box290.bluehost.com<mailto:maker-devel at box290.bluehost.com>
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

Barry Moore
Research Scientist
Dept. of Human Genetics
University of Utah
Salt Lake City, UT 84112
--------------------------------------------
(801) 585-3543







--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India


_______________________________________________
maker-devel mailing list
maker-devel at box290.bluehost.com<mailto:maker-devel at box290.bluehost.com>
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org




--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

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From carsonhh at gmail.com  Fri Dec 21 12:14:38 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 21 Dec 2012 14:14:38 -0500
Subject: [maker-devel] query
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49C08@mxb2.hg.genetics.utah.edu>
Message-ID: <CCFA1E38.17327%carsonhh@gmail.com>

Daniel is right. If it's another Fusarium species retraining probably isn't
necessary (distantly related fungi would probably need retraining though).
I'd recommend using GeneMark as well though.  It is very easy to train and
works well on Fungi species.  Could you include the version of Augustus you
are using and the sequence for the contig that fails when you send the
STDERR.

Thanks,
Carson


From:  Daniel Ence <dence at genetics.utah.edu>
Date:  Friday, 21 December, 2012 2:07 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] query

Hi Indu, Can you send the error output that Carson mentioned? Using a
closely related augustus model for your organism can be a good approach, if
that's the best you can do. Training augustus for your organism would be
better, but you don't have to do it.

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

From: indu khatri [indu2287 at gmail.com]
Sent: Friday, December 21, 2012 10:58 AM
To: Daniel Ence
Cc: maker-devel at yandell-lab.org
Subject: Re: [maker-devel] query

Hii Daniel 

It was failing for 1 contig only. The contig length is approx 1.5 Mb.
Excluding that contig the run was successful. I am using RepeatMasker
libraries only for masking the sequences. I used Fusarium graminearum
species as Augustus model species.

I have one more query about Maker annotation results. Only augustus as gene
predictor can be a good predictor for annotations or I have to retrain it
using the previous results from first runs of MAKER in order to get
validated gene models.

Thanks.


On Fri, Dec 21, 2012 at 9:23 AM, Daniel Ence <dence at genetics.utah.edu>
wrote:
> Hi Indu, 
> 
> I'm going to echo Barry's request for more details about this problem too.
> Does augustus fail on more than one contig or does it fail repeatedly on the
> same contig? If its only contig, how big is that contig and is it possibly all
> masked out by repeatmasker? If you exclude that one contig, do the rest run
> successfully?  What are you using to mask the repeats in the genome? Which
> augustus model are you using, and how did you choose that model?
> 
> Thanks,
> Daniel
> 
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> 
> From: indu khatri [indu2287 at gmail.com]
> Sent: Thursday, December 20, 2012 12:41 PM
> To: maker-devel at yandell-lab.org
> Cc: Barry Moore; Daniel Ence
> Subject: Fwd: [maker-devel] query
> 
> 
> Thanks Daniel and Barry for your reply.
> 
> I have sorted out that problem. It was due to very distant homolog species I
> chose for training.
> 
> But, I am still getting some errors while running MAKER.
> ERROR: Augustus failed
> ERROR: Failed while preparing ab-inits
> ERROR: Chunk failed at level:4, tier_type:0
> FAILED CONTIG
> 
> Can you please tell me what is the possible reason for this error?
> 
> Thanks in advance.
> 
> 
> 
> On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <barry.moore at genetics.utah.edu>
> wrote:
>> Hi Indu, 
>> 
>> The error output as Daniel suggested would be great and also a bit more
>> detail on the problem.  Is it stalled on a long contig - how long?  How long
>> has it been stalled for?  How many cpus are you running?  Are you running
>> under MPI?  How big is the protein evidence file?  If you're using the altest
>> function for your ESTs then it's running tblastx which is up to 10X slower
>> than blastn with regular ESTs, is it possible that you're stuck on tblastx?
>> 
>> Finally, it can help if you isolate the problem a bit.  Can you run
>> successfully on any of your contigs by running single contigs in your fasta
>> file?  If it's stalled on a large contig, iteratively cut it in half and see
>> if the problem isolates to one part of the contig.
>> 
>> B
>> 
>> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
>> 
>>>  Hello Maker-devel
>>>     Thanks for adding me to the list. I am new to this field. I have a query
>>> regarding maker annotation.
>>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>>     annotate it using MAKER pipeline. I only have paired end WGS sequence
>>> from
>>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
>>>     any transcriptome data. I am using ESTs of a closer species for
>>> validation
>>>     and similarly the protein sequences. I have started annotation but the
>>>     problem is the pipeline gets stuck to the first contig on blastx step
>>> and
>>>     doesn't move further. I could not make out the problem. Can you please
>>> help
>>>     me out of this.
>>> 
>>> Thanks and regards
>>> 
>>> -- 
>>>  
>>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e
>>> 6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
>>> PhD Research Fellow,
>>> C/o Dr. Srikrishna Subramanian
>>> Institute of Microbial Technology,
>>> Chandigarh-160036,
>>> India
>>> 
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> 
>> Barry Moore
>> Research Scientist
>> Dept. of Human Genetics
>> University of Utah
>> Salt Lake City, UT 84112
>> --------------------------------------------
>> (801) 585-3543
>> 
>> 
>> 
>> 
> 
> 
> 
> -- 
>  
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a
> &attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
> 
> 
> 
> 
> -- 
>  
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a
> &attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
> 
> 
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
> 



-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From indu2287 at gmail.com  Wed Dec 26 02:34:43 2012
From: indu2287 at gmail.com (indu khatri)
Date: Wed, 26 Dec 2012 15:04:43 +0530
Subject: [maker-devel] query
In-Reply-To: <CCFA1E38.17327%carsonhh@gmail.com>
References: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49C08@mxb2.hg.genetics.utah.edu>
	<CCFA1E38.17327%carsonhh@gmail.com>
Message-ID: <CAFCapZsuT4TaT1dDk3=C0QjtaJxK0-iBQ_HR-n2wDk6kAGiLFw@mail.gmail.com>

Thanks all.

The maker is now running properly. I don't know where the problem actually
was. I re install everything and now its working.

I'll let you know if there are any problems in future.

Thanks!


On Sat, Dec 22, 2012 at 12:44 AM, Carson Holt <carsonhh at gmail.com> wrote:

> Daniel is right. If it's another Fusarium species retraining probably
> isn't necessary (distantly related fungi would probably need retraining
> though).  I'd recommend using GeneMark as well though.  It is very easy to
> train and works well on Fungi species.  Could you include the version of
> Augustus you are using and the sequence for the contig that fails when you
> send the STDERR.
>
> Thanks,
> Carson
>
>
> From: Daniel Ence <dence at genetics.utah.edu>
> Date: Friday, 21 December, 2012 2:07 PM
> To: "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
> Subject: Re: [maker-devel] query
>
> Hi Indu, Can you send the error output that Carson mentioned? Using a
> closely related augustus model for your organism can be a good approach, if
> that's the best you can do. Training augustus for your organism would be
> better, but you don't have to do it.
>
> Thanks,
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ------------------------------
> *From:* indu khatri [indu2287 at gmail.com]
> *Sent:* Friday, December 21, 2012 10:58 AM
> *To:* Daniel Ence
> *Cc:* maker-devel at yandell-lab.org
> *Subject:* Re: [maker-devel] query
>
> Hii Daniel
>
> It was failing for 1 contig only. The contig length is approx 1.5 Mb.
> Excluding that contig the run was successful. I am using RepeatMasker
> libraries only for masking the sequences. I used Fusarium graminearum
> species as Augustus model species.
>
> I have one more query about Maker annotation results. Only augustus as
> gene predictor can be a good predictor for annotations or I have to retrain
> it using the previous results from first runs of MAKER in order to get
> validated gene models.
>
> Thanks.
>
>
> On Fri, Dec 21, 2012 at 9:23 AM, Daniel Ence <dence at genetics.utah.edu>wrote:
>
>> Hi Indu,
>>
>> I'm going to echo Barry's request for more details about this problem
>> too. Does augustus fail on more than one contig or does it fail repeatedly
>> on the same contig? If its only contig, how big is that contig and is it
>> possibly all masked out by repeatmasker? If you exclude that one contig, do
>> the rest run successfully?  What are you using to mask the repeats in the
>> genome? Which augustus model are you using, and how did you choose that
>> model?
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>>
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ------------------------------
>> *From:* indu khatri [indu2287 at gmail.com]
>> *Sent:* Thursday, December 20, 2012 12:41 PM
>> *To:* maker-devel at yandell-lab.org
>> *Cc:* Barry Moore; Daniel Ence
>> *Subject:* Fwd: [maker-devel] query
>>
>>
>> Thanks Daniel and Barry for your reply.
>>
>> I have sorted out that problem. It was due to very distant homolog
>> species I chose for training.
>>
>> But, I am still getting some errors while running MAKER.
>> ERROR: Augustus failed
>> ERROR: Failed while preparing ab-inits
>> ERROR: Chunk failed at level:4, tier_type:0
>> FAILED CONTIG
>>
>> Can you please tell me what is the possible reason for this error?
>>
>> Thanks in advance.
>>
>>
>>
>> On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <
>> barry.moore at genetics.utah.edu> wrote:
>>
>>> Hi Indu,
>>>
>>> The error output as Daniel suggested would be great and also a bit more
>>> detail on the problem.  Is it stalled on a long contig - how long?  How
>>> long has it been stalled for?  How many cpus are you running?  Are you
>>> running under MPI?  How big is the protein evidence file?  If you're using
>>> the altest function for your ESTs then it's running tblastx which is up to
>>> 10X slower than blastn with regular ESTs, is it possible that you're stuck
>>> on tblastx?
>>>
>>> Finally, it can help if you isolate the problem a bit.  Can you run
>>> successfully on any of your contigs by running single contigs in your fasta
>>> file?  If it's stalled on a large contig, iteratively cut it in half and
>>> see if the problem isolates to one part of the contig.
>>>
>>> B
>>>
>>> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
>>>
>>>  Hello Maker-devel
>>>     Thanks for adding me to the list. I am new to this field. I have a
>>> query regarding maker annotation.
>>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>>     annotate it using MAKER pipeline. I only have paired end WGS
>>> sequence from
>>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont
>>> have
>>>     any transcriptome data. I am using ESTs of a closer species for
>>> validation
>>>     and similarly the protein sequences. I have started annotation but
>>> the
>>>     problem is the pipeline gets stuck to the first contig on blastx
>>> step and
>>>     doesn't move further. I could not make out the problem. Can you
>>> please help
>>>     me out of this.
>>>
>>> Thanks and regards
>>>
>>> --
>>>
>>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
>>> Khatri
>>> PhD Research Fellow,
>>> C/o Dr. Srikrishna Subramanian
>>> Institute of Microbial Technology,
>>> Chandigarh-160036,
>>> India
>>>
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>>
>>>
>>> Barry Moore
>>> Research Scientist
>>> Dept. of Human Genetics
>>> University of Utah
>>> Salt Lake City, UT 84112
>>> --------------------------------------------
>>> (801) 585-3543
>>>
>>>
>>>
>>>
>>>
>>
>>
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>>
>
>
> _______________________________________________ maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>



-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>
Indu
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From kapeelc at gmail.com  Mon Dec  3 09:55:20 2012
From: kapeelc at gmail.com (Kapeel Chougule)
Date: Mon, 3 Dec 2012 09:55:20 -0700
Subject: [maker-devel] Maker error message
In-Reply-To: <CCDCDA68.16600%carsonhh@gmail.com>
References: <CA+DOtefhs9BMWn-S2LPv_MkUvikM446jvuxRqfqUax11hhNp3g@mail.gmail.com>
	<CCDCDA68.16600%carsonhh@gmail.com>
Message-ID: <CA+DOtefF6sYrMvnVuQO8P75E5ekfQ1uQaAkvhmuTZ43bBdan9g@mail.gmail.com>

Hi Carson,

The MAKER devel version worked like a charm on the failed chromosomes. But
the MAKER 2.2.6 ended up giving me the same ERROR when I re-run it.

Thank you,

Kapeel

On Thu, Nov 29, 2012 at 7:52 AM, Carson Holt <carsonhh at gmail.com> wrote:

> There should normally be more error message than that.  The module used to
> capture the error returns the string "Died" without an end line character
> when there is a problem capturing the STDERR of the failure (and I see that
> phrase here), so could you run this again and see if it produces a
> different message the second time.  Also I'm going to send you instructions
> on download the development version of MAKER in a separate message (off
> list).  It is easier for me to make changes and have you test them
> immediately that way.  Also there are already some bug fixes in the devel
> version so it's good to rule those out.
>
> Thanks,
> Carson
>
>
> From: Kapeel Chougule <kapeelc at gmail.com>
> Date: Wednesday, 28 November, 2012 3:15 PM
> To: "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
> Subject: Re: [maker-devel] Maker error message
>
> Attached is the maker_opts file. I am using my own customized repeat
> library and repeat_protein files. The length of the identifiers was
> shortened to < 50 characters as in my previous run it complained for
> identifiers having > 50 characters.
>
> Thank you,
>
> Kapeel
> On Wed, Nov 28, 2012 at 12:25 PM, Daniel Ence <dence at genetics.utah.edu>wrote:
>
>> Hi Kapeel,
>>
>> Please keep this discussion on the maker-devel group, so we can get
>> everyone's input to help resolve this issue with maker.
>>
>> Can you sen me the maker_opts file that you were using? The options that
>> might be relevant include the libraries you were giving repeatrunner and
>> repeatmasker.
>>
>> Thanks,
>> Daniel
>>
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: kapeelc at gmail.com [kapeelc at gmail.com]
>> Sent: Wednesday, November 28, 2012 11:39 AM
>> To: Daniel Ence
>> Subject: Re: Maker error message
>>
>> Hi Daniel,
>>
>> Here is the output around the error:
>>
>> j_size:94   current j:76
>>  j_size:94   current j:77
>>  j_size:94   current j:78
>>  j_size:94   current j:79
>>  j_size:94   current j:80
>>  j_size:94   current j:81
>>  j_size:94   current j:82
>>  j_size:94   current j:83
>>  j_size:94   current j:84
>>  j_size:94   current j:85
>>  j_size:94   current j:86
>>  j_size:94   current j:87
>>  j_size:94   current j:88
>>  j_size:94   current j:89
>>  j_size:94   current j:90
>>  j_size:94   current j:91
>>  j_size:94   current j:92
>>  j_size:94   current j:93
>> ...finished clustering.
>> re reading repeat masker report.
>>
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/Chr5.64.PReDa_121015_short%2Efasta.specific.out
>> re reading blast report.
>>
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/Chr5.64.TE_protein_db_121015_short_header%2Efasta.repeatrunner
>> deleted:1 hits
>> in cluster::shadow_cluster...
>> DiedERROR: Failed while processing all repeats
>> ERROR: Chunk failed at level:3, tier_type:1
>> FAILED CONTIG:Chr5
>>
>> ERROR: Chunk failed at level:2, tier_type:0
>> FAILED CONTIG:Chr5
>>
>>
>>
>>
>> --Next Contig--
>>
>> Processing run.log file...
>>
>> Maker is now finished!!!
>>
>>
>> For RepeatMasker I am using wublast as the search engine.
>>
>> The run log had this:
>>
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.62
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.62
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> LOGCHILD
>>  /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5_datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> DIED    RANK    0
>> DIED    COUNT   2
>>
>> Is there way to skip the the failed chunk and move forward??
>>
>> Thanks
>>
>> Kapeel
>>
>> <quote author='Daniel Ence'>
>> Hi Kapeel,
>>
>> I think we need some more information about the settings that you're
>> running
>> maker with. Can you give more of the output around the error? Also, since
>> maker is dying during the repeatmasking stage, can you tell us more about
>> the settings you have for RepeatMasker?
>>
>>
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________
>> From: maker-devel-bounces at yandell-lab.org
>> [maker-devel-bounces at yandell-lab.org] on behalf of Kapeel Chougule
>> [kapeelc at gmail.com]
>> Sent: Tuesday, November 27, 2012 6:23 PM
>> To: maker-devel at yandell-lab.org
>> Subject: [maker-devel] Maker error message
>>
>> Hi,
>>
>> I recently ran into this error for chr5. I am using maker 2.26 .
>>
>> DiedERROR: Failed while processing all repeats
>> ERROR: Chunk failed at level:3, tier_type:1
>> FAILED CONTIG:Chr5
>>
>> ERROR: Chunk failed at level:2, tier_type:0
>> FAILED CONTIG:Chr5
>>
>> Could someone help me understand this error and why its happening?
>>
>> Thanks,
>>
>> --
>>
>> Kapeel Chougule
>> Systems Programmer
>> Arizona Genomics Institute (AGI)
>> Thomas W. Keating Bioresearch Building
>> University of Arizona
>> 1657 E. Helen Street
>> Tucson, AZ 85719
>> www.genome.arizona.edu<http://www.genome.arizona.edu>
>>
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>> </quote>
>> Quoted from:
>>
>> http://gmod.827538.n3.nabble.com/Maker-error-message-tp4027051p4027052.html
>>
>
>
>
> --
> *
>
> Kapeel Chougule
> Systems Programmer
> Arizona Genomics Institute (AGI)
> Thomas W. Keating Bioresearch Building
> University of Arizona
> 1657 E. Helen Street
> Tucson, AZ 85719
> www.genome.arizona.edu
> *
> _______________________________________________ maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>



-- 
*

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719
www.genome.arizona.edu
*
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From carsonhh at gmail.com  Mon Dec  3 12:28:40 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Mon, 03 Dec 2012 14:28:40 -0500
Subject: [maker-devel] Maker error message
In-Reply-To: <CA+DOtefF6sYrMvnVuQO8P75E5ekfQ1uQaAkvhmuTZ43bBdan9g@mail.gmail.com>
Message-ID: <CCE26754.16702%carsonhh@gmail.com>

Good to know.  It must be covered by an existing bug fix.  I'm going to wrap
up the devel version as 2.27 in the next couple days and put it online.

Thanks,
Carson



From:  Kapeel Chougule <kapeelc at gmail.com>
Date:  Monday, 3 December, 2012 11:55 AM
To:  Carson Holt <carsonhh at gmail.com>
Cc:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] Maker error message

Hi Carson,

The MAKER devel version worked like a charm on the failed chromosomes. But
the MAKER 2.2.6 ended up giving me the same ERROR when I re-run it.

Thank you,

Kapeel

On Thu, Nov 29, 2012 at 7:52 AM, Carson Holt <carsonhh at gmail.com> wrote:
> There should normally be more error message than that.  The module used to
> capture the error returns the string "Died" without an end line character when
> there is a problem capturing the STDERR of the failure (and I see that phrase
> here), so could you run this again and see if it produces a different message
> the second time.  Also I'm going to send you instructions on download the
> development version of MAKER in a separate message (off list).  It is easier
> for me to make changes and have you test them immediately that way.  Also
> there are already some bug fixes in the devel version so it's good to rule
> those out.
> 
> Thanks,
> Carson
> 
> 
> From:  Kapeel Chougule <kapeelc at gmail.com>
> Date:  Wednesday, 28 November, 2012 3:15 PM
> To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
> Subject:  Re: [maker-devel] Maker error message
> 
> Attached is the maker_opts file. I am using my own customized repeat library
> and repeat_protein files. The length of the identifiers was shortened to < 50
> characters as in my previous run it complained for identifiers having > 50
> characters.  
> 
> Thank you,
> 
> Kapeel
> On Wed, Nov 28, 2012 at 12:25 PM, Daniel Ence <dence at genetics.utah.edu> wrote:
>> Hi Kapeel, 
>> 
>> Please keep this discussion on the maker-devel group, so we can get
>> everyone's input to help resolve this issue with maker.
>> 
>> Can you sen me the maker_opts file that you were using? The options that
>> might be relevant include the libraries you were giving repeatrunner and
>> repeatmasker.
>> 
>> Thanks,
>> Daniel 
>> 
>> 
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: kapeelc at gmail.com [kapeelc at gmail.com]
>> Sent: Wednesday, November 28, 2012 11:39 AM
>> To: Daniel Ence
>> Subject: Re: Maker error message
>> 
>> Hi Daniel,
>> 
>> Here is the output around the error:
>> 
>> j_size:94   current j:76
>>  j_size:94   current j:77
>>  j_size:94   current j:78
>>  j_size:94   current j:79
>>  j_size:94   current j:80
>>  j_size:94   current j:81
>>  j_size:94   current j:82
>>  j_size:94   current j:83
>>  j_size:94   current j:84
>>  j_size:94   current j:85
>>  j_size:94   current j:86
>>  j_size:94   current j:87
>>  j_size:94   current j:88
>>  j_size:94   current j:89
>>  j_size:94   current j:90
>>  j_size:94   current j:91
>>  j_size:94   current j:92
>>  j_size:94   current j:93
>> ...finished clustering.
>> re reading repeat masker report.
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/Chr5.64.PReDa_121015_short%2Efasta.specif
>> ic.out
>> re reading blast report.
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/Chr5.64.TE_protein_db_121015_short_header
>> %2Efasta.repeatrunner
>> deleted:1 hits
>> in cluster::shadow_cluster...
>> DiedERROR: Failed while processing all repeats
>> ERROR: Chunk failed at level:3, tier_type:1
>> FAILED CONTIG:Chr5
>> 
>> ERROR: Chunk failed at level:2, tier_type:0
>> FAILED CONTIG:Chr5
>> 
>> 
>> 
>> 
>> --Next Contig--
>> 
>> Processing run.log file...
>> 
>> Maker is now finished!!!
>> 
>> 
>> For RepeatMasker I am using wublast as the search engine.
>> 
>> The run log had this:
>> 
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.62
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.62
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.63
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> LOGCHILD        
>> /opt/Sma_Processing/Kapeel/japonica_maker_run/jap_chr5/Chr5.maker.output/Chr5
>> _datastore/8A/9B/Chr5//theVoid.Chr5/run.log.child.64
>> DIED    RANK    0
>> DIED    COUNT   2
>> 
>> Is there way to skip the the failed chunk and move forward??
>> 
>> Thanks
>> 
>> Kapeel
>> 
>> <quote author='Daniel Ence'>
>> Hi Kapeel,
>> 
>> I think we need some more information about the settings that you're running
>> maker with. Can you give more of the output around the error? Also, since
>> maker is dying during the repeatmasking stage, can you tell us more about
>> the settings you have for RepeatMasker?
>> 
>> 
>> 
>> Thanks,
>> Daniel
>> 
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________
>> From: maker-devel-bounces at yandell-lab.org
>> [maker-devel-bounces at yandell-lab.org] on behalf of Kapeel Chougule
>> [kapeelc at gmail.com]
>> Sent: Tuesday, November 27, 2012 6:23 PM
>> To: maker-devel at yandell-lab.org
>> Subject: [maker-devel] Maker error message
>> 
>> Hi,
>> 
>> I recently ran into this error for chr5. I am using maker 2.26 .
>> 
>> DiedERROR: Failed while processing all repeats
>> ERROR: Chunk failed at level:3, tier_type:1
>> FAILED CONTIG:Chr5
>> 
>> ERROR: Chunk failed at level:2, tier_type:0
>> FAILED CONTIG:Chr5
>> 
>> Could someone help me understand this error and why its happening?
>> 
>> Thanks,
>> 
>> --
>> 
>> Kapeel Chougule
>> Systems Programmer
>> Arizona Genomics Institute (AGI)
>> Thomas W. Keating Bioresearch Building
>> University of Arizona
>> 1657 E. Helen Street
>> Tucson, AZ 85719
>> www.genome.arizona.edu <http://www.genome.arizona.edu>
>> <http://www.genome.arizona.edu>
>> 
>> 
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> 
>> </quote>
>> Quoted from:
>> http://gmod.827538.n3.nabble.com/Maker-error-message-tp4027051p4027052.html
> 
> 
> 
> -- 
> 
> Kapeel Chougule
> Systems Programmer
> Arizona Genomics Institute (AGI)
> Thomas W. Keating Bioresearch Building
> University of Arizona
> 1657 E. Helen Street
> Tucson, AZ 85719 
> www.genome.arizona.edu <http://www.genome.arizona.edu>
> 
> _______________________________________________ maker-devel mailing list
> maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/mak
> er-devel_yandell-lab.org



-- 

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719   
www.genome.arizona.edu <http://www.genome.arizona.edu>



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From parulk at caltech.edu  Tue Dec  4 17:27:18 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Tue, 4 Dec 2012 16:27:18 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCDD765C.16680%carsonhh@gmail.com>
References: <CCDD765C.16680%carsonhh@gmail.com>
Message-ID: <4049.131.215.15.234.1354667238.squirrel@webmail.caltech.edu>

Dear Carson,

Thanks once again, we have limited experimental data with very short ESTs.
CEGMA is useful for us to gauge our gene-model.
On a different note to re-annotate genome(post evidence based
prediction(used as training dataset)and abinitio gene-prediction). Here
are the control parameters I am using with AED score set to 0.5, however I
get predictions that includes the ones with AED score of 1.00 in resulting
gff3 file. Though I do see the number of genes reduced to 1/3 of initial
gff3 file.

#-----Genome (Required for De-Novo Annotation)
genome=Scaffold1.fa #genome sequence file in fasta format
organism_type=eukaryotic #eukaryotic or prokaryotic. Default is eukaryotic

#-----Re-annotation Using MAKER Derived GFF3
genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 = no
protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 = no

#-----MAKER Behavior Options
AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by 0
and 1)

Thanks and regards,
Parul Kudtarkar

> Wow 330,000 is a lot. a large portion of genes are likely to be partial at
> best.  You should seriously consider using mRNAseq to capture those by
> using maker's est_gff option to pass in results from cufflinks or trinity.
>  Also I wouldn't even try to annotate contigs less than 10kb in size, just
> have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>
> Thanks,
> Carson
>
>
>
>
> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>
>>Thanks for the guidance Carson, total contig size is 330,611 with N50 of
>>39.17kb. I agree we have short ESTs. So this is the possible reason when
>>filtering based on AED score 0.75 there are no gene models predicted
>>despite the model_gff file has few genes with scores less than 0.75?
>>
>>Thanks and regards,
>>Parul Kudtarkar
>>
>>> There are certain characteristics that are apparent in this contig.
>>First
>>> it seems to be repeat rich with a very low gene density.  You also have
>>very short ESTs, and because of the lengths you are probably getting
>>many
>>> of them to align spuriously which produces very short gene models that
>>are
>>> more than likely false positives or at the very least just a piece of a
>>gene.  I would turn off est2genome as a predictor for this reason unless
>>you can get longer EST assemblies (i.e. From mRNAseq).    Your protein
>>alignments also seem to be few and far between.  You probably need to
>>add
>>> more proteins from a couple of related species, and you might consider
>>using protein2genome rather than est2genome as a predictor if you are
>>still working to generate a training set. Also est2genome produced
>>models
>>> almost always have an AED score near 0 so mixing est2genome with the
>>AED_threshold with such limited protein support does create an
>>artificial
>>> bias to get back very short and incomplete models.
>>>
>>> How many contigs do you have in total and what is the N50 value for the
>>assembly? If you have a large number of very short contigs, you will get
>>very inflated gene counts because you get genes split across contigs and
>>many contigs tend t be subtle rearrangements of other contigs just
>>assembled in a slightly different way (so you can get bits and pieces of
>>the same genes just rearranged).  This scenario is another confounding
>>factor if using the est2genome predictor with short ESTs.  I would
>>recommend running CEGMA to get an estimate for the genome completeness
>>as
>>> well as get an estimate of fragmentation as one of the statistics
>>produced
>>> is a percent of genes that are found complete (end to end) vs those
>>> that
>>are partial.  CEGMA identifies house keeping genes that tend to be
>>shorter
>>> and less intron rich than other genes in the genome, so if CEGMA gives
>>> a
>>high partial percentage and a low complete percentage, then this pattern
>>can be expected to be even more exaggerated for other genes in the
>>genome.
>>>
>>> If your genome is highly fragmented or proteins do not align well then
>>there are other strategies.  For example, some vertebrate genomes end up
>>having extremely fragmented assemblies (on the order of 100,000
>>contigs),
>>> and if they are distantly related to other annotated species few
>>proteins
>>> may align to the contigs because the introns in the alignments tend to
>>be
>>> so long and exons so short that it pushes down the significance scores
>>too
>>> much.  In those cases heavy mRNAseq seems to be the best if not only
>>> way
>>to get enough evidence to stitch gene models together.
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>
>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>
>>>>Dear Carson and Daniel,
>>>>Thanks. I ran sample file for filtering genes based on AED score. The
>>input gff3 file was provided to option model_pred(see attached file
>>Scaffold1.gff), the cutoff AED score was set to 0.75. There are at least
>>>> 5
>>>>genes with AED score less than 0.75. However there were no genes
>>>> predicted
>>>>in the output file(see attached file Scaffold1_out). I have also
>>attached
>>>>the maker_opts.ctl. Could you please advice on this.
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>> Use the AED_threshold option in the maker_opts.ctl file if you just
>>>>>want
>>>>> to restrict final gene models to close matches directly within maker.
>>>>>On
>>>>> the other hand, if you are trying to build a dataset for training
>>>>> gene
>>predictors, use the maker2zff script for generating a filtered dataset
>>>>>for
>>>>> SNAP training.  There are a number of filters available. Just call
>>>>> the
>>script once without parameters to see the options.
>>>>> Thanks,
>>>>> Carson
>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>Hi Parul,
>>>>>>I think the way you described (with the maker_opts.ctl file) is how
>>you
>>>>>>want to proceed. You still need to give the genome too.
>>>>>>Daniel
>>>>>>Daniel Ence
>>>>>>Graduate Student
>>>>>>Eccles Institute of Human Genetics
>>>>>>University of Utah
>>>>>>15 North 2030 East, Room 2100
>>>>>>Salt Lake City, UT 84112-5330
>>>>>>________________________________________
>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
>>[parulk at caltech.edu]
>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>To: Parul Kudtarkar
>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>Also, are there any other parameters that are required when filtering
>>based on AED score?
>>>>>>> Hello Carson,
>>>>>>> Just to confirm, Is there a script that would filter gene models at
>>specific AED score.
>>>>>>> Alternatively if I were to do this within maker with regards to
>>>>>>>parameters
>>>>>>> in maker_opts.ctl file I would have to provide my predicted genes
>>>>>>>gff3
>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and 1 is
>>worst
>>>>>>>> as
>>>>>>>> it is a distance metric.  You can use the AED_threshold parameter
>>to
>>>>>>>> require better matching to the evidence by setting it closer to 0.
>>>>>>>>You
>>>>>>>> can
>>>>>>>> also try to increase protein homology evidence as some of your
>>calls
>>>>>>>>may
>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>> --Carson
>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>>Dear Maker community,
>>>>>>>>>For gene-prediction I get training data-set from evidence based
>>prediction, I use this data-set to train SNAP as well as Augustus
>>predictions, followed by boot-strapping. I would typically expect
>>20-30K
>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>> indicating
>>>>>>>>> too
>>>>>>>>>many false positives. Is there a way to further refine these
>>predication/script to retain predictions with AED score 1 and if
>>yes
>>>>>>>>>how
>>>>>>>>>to go about this?
>>>>>>>>>Thanks and regards,
>>>>>>>>>Parul Kudtarkar
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>>>_______________________________________________
>>>>>>>>>maker-devel mailing list
>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>>>>>>>>>.o
>>rg
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>>>_______________________________________________
>>>>>>maker-devel mailing list
>>>>>>maker-devel at box290.bluehost.com
>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.or
>>>>>>g
>>_______________________________________________
>>>>>>maker-devel mailing list
>>>>>>maker-devel at box290.bluehost.com
>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.or
>>>>>>g
>>>>> _______________________________________________
>>>>> maker-devel mailing list
>>>>> maker-devel at box290.bluehost.com
>>>>>
>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>>
>>>
>>>
>>
>>
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org
>>
>>
>>
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From parulk at caltech.edu  Tue Dec  4 17:39:51 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Tue, 4 Dec 2012 16:39:51 -0800 (PST)
Subject: [maker-devel] Maker Behavior Options
Message-ID: <4249.131.215.15.234.1354667991.squirrel@webmail.caltech.edu>

Hello,

I would presume min_contig=1 here is equal to contig size of 1KB?
min_contig=1

Thanks and regards,
Parul Kudtarkar

--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From dence at genetics.utah.edu  Wed Dec  5 08:39:36 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Wed, 5 Dec 2012 15:39:36 +0000
Subject: [maker-devel] Maker Behavior Options
In-Reply-To: <4249.131.215.15.234.1354667991.squirrel@webmail.caltech.edu>
References: <4249.131.215.15.234.1354667991.squirrel@webmail.caltech.edu>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB589F@mxb2.hg.genetics.utah.edu>

Hi Parul, 

The "1" there actually means 1 bp. The default setting in maker is to allow contigs of any length. 


Thanks
Daniel 

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________________
From: maker-devel-bounces at yandell-lab.org [maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar [parulk at caltech.edu]
Sent: Tuesday, December 04, 2012 5:39 PM
To: maker-devel at yandell-lab.org
Subject: [maker-devel] Maker Behavior Options

Hello,

I would presume min_contig=1 here is equal to contig size of 1KB?
min_contig=1

Thanks and regards,
Parul Kudtarkar

--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org


_______________________________________________
maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org



From carsonhh at gmail.com  Wed Dec  5 08:44:52 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Wed, 05 Dec 2012 10:44:52 -0500
Subject: [maker-devel] AED score
In-Reply-To: <4049.131.215.15.234.1354667238.squirrel@webmail.caltech.edu>
Message-ID: <CCE4D52D.169DA%carsonhh@gmail.com>

You should always get all predictions, but should only get models
(match/match_part) with AED scores less than 0.5.  You should never get
models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
keep_preds set.

Do you have keeps_preds set or gene models with AED values above your
threshold (not match/match_part features)?  If the first one is the case,
just set it to 0.  If the second one in the case, could you send me
example GFF3?

Thanks,
Carson



On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Carson,
>
>Thanks once again, we have limited experimental data with very short ESTs.
>CEGMA is useful for us to gauge our gene-model.
>On a different note to re-annotate genome(post evidence based
>prediction(used as training dataset)and abinitio gene-prediction). Here
>are the control parameters I am using with AED score set to 0.5, however I
>get predictions that includes the ones with AED score of 1.00 in resulting
>gff3 file. Though I do see the number of genes reduced to 1/3 of initial
>gff3 file.
>
>#-----Genome (Required for De-Novo Annotation)
>genome=Scaffold1.fa #genome sequence file in fasta format
>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is eukaryotic
>
>#-----Re-annotation Using MAKER Derived GFF3
>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
>est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 = no
>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
>other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 = no
>
>#-----MAKER Behavior Options
>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by 0
>and 1)
>
>Thanks and regards,
>Parul Kudtarkar
>
>> Wow 330,000 is a lot. a large portion of genes are likely to be partial
>>at
>> best.  You should seriously consider using mRNAseq to capture those by
>> using maker's est_gff option to pass in results from cufflinks or
>>trinity.
>>  Also I wouldn't even try to annotate contigs less than 10kb in size,
>>just
>> have maker skip them by setting the min_contig filter in the
>> maker_opts.ctl file.
>>
>> Thanks,
>> Carson
>>
>>
>>
>>
>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>
>>>Thanks for the guidance Carson, total contig size is 330,611 with N50 of
>>>39.17kb. I agree we have short ESTs. So this is the possible reason when
>>>filtering based on AED score 0.75 there are no gene models predicted
>>>despite the model_gff file has few genes with scores less than 0.75?
>>>
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>
>>>> There are certain characteristics that are apparent in this contig.
>>>First
>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>have
>>>very short ESTs, and because of the lengths you are probably getting
>>>many
>>>> of them to align spuriously which produces very short gene models that
>>>are
>>>> more than likely false positives or at the very least just a piece of
>>>>a
>>>gene.  I would turn off est2genome as a predictor for this reason unless
>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your protein
>>>alignments also seem to be few and far between.  You probably need to
>>>add
>>>> more proteins from a couple of related species, and you might consider
>>>using protein2genome rather than est2genome as a predictor if you are
>>>still working to generate a training set. Also est2genome produced
>>>models
>>>> almost always have an AED score near 0 so mixing est2genome with the
>>>AED_threshold with such limited protein support does create an
>>>artificial
>>>> bias to get back very short and incomplete models.
>>>>
>>>> How many contigs do you have in total and what is the N50 value for
>>>>the
>>>assembly? If you have a large number of very short contigs, you will get
>>>very inflated gene counts because you get genes split across contigs and
>>>many contigs tend t be subtle rearrangements of other contigs just
>>>assembled in a slightly different way (so you can get bits and pieces of
>>>the same genes just rearranged).  This scenario is another confounding
>>>factor if using the est2genome predictor with short ESTs.  I would
>>>recommend running CEGMA to get an estimate for the genome completeness
>>>as
>>>> well as get an estimate of fragmentation as one of the statistics
>>>produced
>>>> is a percent of genes that are found complete (end to end) vs those
>>>> that
>>>are partial.  CEGMA identifies house keeping genes that tend to be
>>>shorter
>>>> and less intron rich than other genes in the genome, so if CEGMA gives
>>>> a
>>>high partial percentage and a low complete percentage, then this pattern
>>>can be expected to be even more exaggerated for other genes in the
>>>genome.
>>>>
>>>> If your genome is highly fragmented or proteins do not align well then
>>>there are other strategies.  For example, some vertebrate genomes end up
>>>having extremely fragmented assemblies (on the order of 100,000
>>>contigs),
>>>> and if they are distantly related to other annotated species few
>>>proteins
>>>> may align to the contigs because the introns in the alignments tend to
>>>be
>>>> so long and exons so short that it pushes down the significance scores
>>>too
>>>> much.  In those cases heavy mRNAseq seems to be the best if not only
>>>> way
>>>to get enough evidence to stitch gene models together.
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>
>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>
>>>>>Dear Carson and Daniel,
>>>>>Thanks. I ran sample file for filtering genes based on AED score. The
>>>input gff3 file was provided to option model_pred(see attached file
>>>Scaffold1.gff), the cutoff AED score was set to 0.75. There are at least
>>>>> 5
>>>>>genes with AED score less than 0.75. However there were no genes
>>>>> predicted
>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>attached
>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you just
>>>>>>want
>>>>>> to restrict final gene models to close matches directly within
>>>>>>maker.
>>>>>>On
>>>>>> the other hand, if you are trying to build a dataset for training
>>>>>> gene
>>>predictors, use the maker2zff script for generating a filtered dataset
>>>>>>for
>>>>>> SNAP training.  There are a number of filters available. Just call
>>>>>> the
>>>script once without parameters to see the options.
>>>>>> Thanks,
>>>>>> Carson
>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>>Hi Parul,
>>>>>>>I think the way you described (with the maker_opts.ctl file) is how
>>>you
>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>Daniel
>>>>>>>Daniel Ence
>>>>>>>Graduate Student
>>>>>>>Eccles Institute of Human Genetics
>>>>>>>University of Utah
>>>>>>>15 North 2030 East, Room 2100
>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>________________________________________
>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
>>>[parulk at caltech.edu]
>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>To: Parul Kudtarkar
>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>Also, are there any other parameters that are required when
>>>>>>>filtering
>>>based on AED score?
>>>>>>>> Hello Carson,
>>>>>>>> Just to confirm, Is there a script that would filter gene models
>>>>>>>>at
>>>specific AED score.
>>>>>>>> Alternatively if I were to do this within maker with regards to
>>>>>>>>parameters
>>>>>>>> in maker_opts.ctl file I would have to provide my predicted genes
>>>>>>>>gff3
>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and 1 is
>>>worst
>>>>>>>>> as
>>>>>>>>> it is a distance metric.  You can use the AED_threshold parameter
>>>to
>>>>>>>>> require better matching to the evidence by setting it closer to
>>>>>>>>>0.
>>>>>>>>>You
>>>>>>>>> can
>>>>>>>>> also try to increase protein homology evidence as some of your
>>>calls
>>>>>>>>>may
>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>> --Carson
>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>wrote:
>>>>>>>>>>Dear Maker community,
>>>>>>>>>>For gene-prediction I get training data-set from evidence based
>>>prediction, I use this data-set to train SNAP as well as Augustus
>>>predictions, followed by boot-strapping. I would typically expect
>>>20-30K
>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>> indicating
>>>>>>>>>> too
>>>>>>>>>>many false positives. Is there a way to further refine these
>>>predication/script to retain predictions with AED score 1 and if
>>>yes
>>>>>>>>>>how
>>>>>>>>>>to go about this?
>>>>>>>>>>Thanks and regards,
>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>--
>>>>>>>>>>Scientific Programmer
>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>Beckman Institute,
>>>>>>>>>>California Institute of Technology
>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>ab
>>>>>>>>>>.o
>>>rg
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>>>_______________________________________________
>>>>>>>maker-devel mailing list
>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.
>>>>>>>or
>>>>>>>g
>>>_______________________________________________
>>>>>>>maker-devel mailing list
>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.
>>>>>>>or
>>>>>>>g
>>>>>> _______________________________________________
>>>>>> maker-devel mailing list
>>>>>> maker-devel at box290.bluehost.com
>>>>>>
>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.o
>>>>>>rg
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>>
>>>>
>>>>
>>>
>>>
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>>>
>>>
>>>
>>>
>>
>>
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>





From parulk at caltech.edu  Wed Dec  5 13:04:35 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Wed, 5 Dec 2012 12:04:35 -0800 (PST)
Subject: [maker-devel] Maker Behavior Options
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB589F@mxb2.hg.genetics.utah.edu>
References: <4249.131.215.15.234.1354667991.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB589F@mxb2.hg.genetics.utah.edu>
Message-ID: <1863.131.215.15.234.1354737875.squirrel@webmail.caltech.edu>

Dear Daniel,

Thanks for a quick response.

Thanks and regards,
Parul Kudtarkar

> Hi Parul,
>
> The "1" there actually means 1 bp. The default setting in maker is to
> allow contigs of any length.
>
>
> Thanks
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: maker-devel-bounces at yandell-lab.org
> [maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
> [parulk at caltech.edu]
> Sent: Tuesday, December 04, 2012 5:39 PM
> To: maker-devel at yandell-lab.org
> Subject: [maker-devel] Maker Behavior Options
>
> Hello,
>
> I would presume min_contig=1 here is equal to contig size of 1KB?
> min_contig=1
>
> Thanks and regards,
> Parul Kudtarkar
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From carsonhh at gmail.com  Wed Dec  5 13:31:26 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Wed, 05 Dec 2012 15:31:26 -0500
Subject: [maker-devel] AED score
In-Reply-To: <1853.131.215.15.234.1354737826.squirrel@webmail.caltech.edu>
Message-ID: <CCE516E9.16A20%carsonhh@gmail.com>

Your output has no genes.  They've all been filtered out.  The gene
predictions are left for reference purposes, but there are no gene models
in the file.  You need to look at the type columns in the GFF3 file -->
match/match_part features are evidence and reference data but not models.
All models will have types gene/mRNA/exon/CDS.  For example if you just
want gene models in your file you can use the gff3_merge script with the
-g option, and it will only print out the gene models.

I think you may be misinterpreting what is happening at different steps,
as well as how to read the result files.  Could you give me a detailed
explanation of what you expect to get back together with your control
files and I can walk you through the configuration, and indicate what to
expect.  Also what was the report like from CEGMA. Could you include the
report file that shows how complete your genome is and how fragmented it
is?  

Thanks,
Carson



On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Carson,
>
>Thanks for a quick response. keep_preds is set to 0
>Though for previous step(ab-intio gene predictions keep_preds was set to
>1, see Scaffold1_input.gff). I have also attached the output file
>Scaffold1_out.gff.
>Please advice.
>
>Thanks and regards,
>Parul Kudtarkar
>
>> You should always get all predictions, but should only get models
>> (match/match_part) with AED scores less than 0.5.  You should never get
>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>> keep_preds set.
>>
>> Do you have keeps_preds set or gene models with AED values above your
>> threshold (not match/match_part features)?  If the first one is the
>>case,
>> just set it to 0.  If the second one in the case, could you send me
>> example GFF3?
>>
>> Thanks,
>> Carson
>>
>>
>>
>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>
>>>Dear Carson,
>>>
>>>Thanks once again, we have limited experimental data with very short
>>> ESTs.
>>>CEGMA is useful for us to gauge our gene-model.
>>>On a different note to re-annotate genome(post evidence based
>>>prediction(used as training dataset)and abinitio gene-prediction). Here
>>>are the control parameters I am using with AED score set to 0.5, however
>>> I
>>>get predictions that includes the ones with AED score of 1.00 in
>>> resulting
>>>gff3 file. Though I do see the number of genes reduced to 1/3 of initial
>>>gff3 file.
>>>
>>>#-----Genome (Required for De-Novo Annotation)
>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>> eukaryotic
>>>
>>>#-----Re-annotation Using MAKER Derived GFF3
>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
>>>est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
>>>no
>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
>>>other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 = no
>>>
>>>#-----MAKER Behavior Options
>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by 0
>>>and 1)
>>>
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>
>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>partial
>>>>at
>>>> best.  You should seriously consider using mRNAseq to capture those by
>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>trinity.
>>>>  Also I wouldn't even try to annotate contigs less than 10kb in size,
>>>>just
>>>> have maker skip them by setting the min_contig filter in the
>>>> maker_opts.ctl file.
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>
>>>>
>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>
>>>>>Thanks for the guidance Carson, total contig size is 330,611 with N50
>>>>> of
>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>> when
>>>>>filtering based on AED score 0.75 there are no gene models predicted
>>>>>despite the model_gff file has few genes with scores less than 0.75?
>>>>>
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>
>>>>>> There are certain characteristics that are apparent in this contig.
>>>>>First
>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>have
>>>>>very short ESTs, and because of the lengths you are probably getting
>>>>>many
>>>>>> of them to align spuriously which produces very short gene models
>>>>>> that
>>>>>are
>>>>>> more than likely false positives or at the very least just a piece
>>>>>>of
>>>>>>a
>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>> unless
>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your protein
>>>>>alignments also seem to be few and far between.  You probably need to
>>>>>add
>>>>>> more proteins from a couple of related species, and you might
>>>>>> consider
>>>>>using protein2genome rather than est2genome as a predictor if you are
>>>>>still working to generate a training set. Also est2genome produced
>>>>>models
>>>>>> almost always have an AED score near 0 so mixing est2genome with the
>>>>>AED_threshold with such limited protein support does create an
>>>>>artificial
>>>>>> bias to get back very short and incomplete models.
>>>>>>
>>>>>> How many contigs do you have in total and what is the N50 value for
>>>>>>the
>>>>>assembly? If you have a large number of very short contigs, you will
>>>>> get
>>>>>very inflated gene counts because you get genes split across contigs
>>>>> and
>>>>>many contigs tend t be subtle rearrangements of other contigs just
>>>>>assembled in a slightly different way (so you can get bits and pieces
>>>>> of
>>>>>the same genes just rearranged).  This scenario is another confounding
>>>>>factor if using the est2genome predictor with short ESTs.  I would
>>>>>recommend running CEGMA to get an estimate for the genome completeness
>>>>>as
>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>produced
>>>>>> is a percent of genes that are found complete (end to end) vs those
>>>>>> that
>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
>>>>>shorter
>>>>>> and less intron rich than other genes in the genome, so if CEGMA
>>>>>> gives
>>>>>> a
>>>>>high partial percentage and a low complete percentage, then this
>>>>> pattern
>>>>>can be expected to be even more exaggerated for other genes in the
>>>>>genome.
>>>>>>
>>>>>> If your genome is highly fragmented or proteins do not align well
>>>>>> then
>>>>>there are other strategies.  For example, some vertebrate genomes end
>>>>> up
>>>>>having extremely fragmented assemblies (on the order of 100,000
>>>>>contigs),
>>>>>> and if they are distantly related to other annotated species few
>>>>>proteins
>>>>>> may align to the contigs because the introns in the alignments tend
>>>>>> to
>>>>>be
>>>>>> so long and exons so short that it pushes down the significance
>>>>>> scores
>>>>>too
>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not only
>>>>>> way
>>>>>to get enough evidence to stitch gene models together.
>>>>>>
>>>>>> Thanks,
>>>>>> Carson
>>>>>>
>>>>>>
>>>>>>
>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>
>>>>>>>Dear Carson and Daniel,
>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
>>>>>>>The
>>>>>input gff3 file was provided to option model_pred(see attached file
>>>>>Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>> least
>>>>>>> 5
>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>> predicted
>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>attached
>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>Thanks and regards,
>>>>>>>Parul Kudtarkar
>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>just
>>>>>>>>want
>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>maker.
>>>>>>>>On
>>>>>>>> the other hand, if you are trying to build a dataset for training
>>>>>>>> gene
>>>>>predictors, use the maker2zff script for generating a filtered dataset
>>>>>>>>for
>>>>>>>> SNAP training.  There are a number of filters available. Just call
>>>>>>>> the
>>>>>script once without parameters to see the options.
>>>>>>>> Thanks,
>>>>>>>> Carson
>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>wrote:
>>>>>>>>>Hi Parul,
>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
>>>>>>>>>how
>>>>>you
>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>Daniel
>>>>>>>>>Daniel Ence
>>>>>>>>>Graduate Student
>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>University of Utah
>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>________________________________________
>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
>>>>>[parulk at caltech.edu]
>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>Also, are there any other parameters that are required when
>>>>>>>>>filtering
>>>>>based on AED score?
>>>>>>>>>> Hello Carson,
>>>>>>>>>> Just to confirm, Is there a script that would filter gene models
>>>>>>>>>>at
>>>>>specific AED score.
>>>>>>>>>> Alternatively if I were to do this within maker with regards to
>>>>>>>>>>parameters
>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>genes
>>>>>>>>>>gff3
>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and 1
>>>>>>>>>>> is
>>>>>worst
>>>>>>>>>>> as
>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
>>>>>>>>>>> parameter
>>>>>to
>>>>>>>>>>> require better matching to the evidence by setting it closer to
>>>>>>>>>>>0.
>>>>>>>>>>>You
>>>>>>>>>>> can
>>>>>>>>>>> also try to increase protein homology evidence as some of your
>>>>>calls
>>>>>>>>>>>may
>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>> --Carson
>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>wrote:
>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>For gene-prediction I get training data-set from evidence based
>>>>>prediction, I use this data-set to train SNAP as well as Augustus
>>>>>predictions, followed by boot-strapping. I would typically expect
>>>>>20-30K
>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>> indicating
>>>>>>>>>>>> too
>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>predication/script to retain predictions with AED score 1 and if
>>>>>yes
>>>>>>>>>>>>how
>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>--
>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-l
>>>>>>>>>>>>ab
>>>>>>>>>>>>.o
>>>>>rg
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>>>_______________________________________________
>>>>>>>>>maker-devel mailing list
>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>>>>>>>>>b.
>>>>>>>>>or
>>>>>>>>>g
>>>>>_______________________________________________
>>>>>>>>>maker-devel mailing list
>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>>>>>>>>>b.
>>>>>>>>>or
>>>>>>>>>g
>>>>>>>> _______________________________________________
>>>>>>>> maker-devel mailing list
>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>
>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>>>>>>>>.o
>>>>>>>>rg
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>>>
>>
>>
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org





From parulk at caltech.edu  Wed Dec  5 13:03:46 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Wed, 5 Dec 2012 12:03:46 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCE4D52D.169DA%carsonhh@gmail.com>
References: <CCE4D52D.169DA%carsonhh@gmail.com>
Message-ID: <1853.131.215.15.234.1354737826.squirrel@webmail.caltech.edu>

Dear Carson,

Thanks for a quick response. keep_preds is set to 0
Though for previous step(ab-intio gene predictions keep_preds was set to
1, see Scaffold1_input.gff). I have also attached the output file
Scaffold1_out.gff.
Please advice.

Thanks and regards,
Parul Kudtarkar

> You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>
> Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the case,
> just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>
> Thanks,
> Carson
>
>
>
> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>
>>Dear Carson,
>>
>>Thanks once again, we have limited experimental data with very short
>> ESTs.
>>CEGMA is useful for us to gauge our gene-model.
>>On a different note to re-annotate genome(post evidence based
>>prediction(used as training dataset)and abinitio gene-prediction). Here
>>are the control parameters I am using with AED score set to 0.5, however
>> I
>>get predictions that includes the ones with AED score of 1.00 in
>> resulting
>>gff3 file. Though I do see the number of genes reduced to 1/3 of initial
>>gff3 file.
>>
>>#-----Genome (Required for De-Novo Annotation)
>>genome=Scaffold1.fa #genome sequence file in fasta format
>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>> eukaryotic
>>
>>#-----Re-annotation Using MAKER Derived GFF3
>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
>>est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 = no
>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
>>other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 = no
>>
>>#-----MAKER Behavior Options
>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by 0
>>and 1)
>>
>>Thanks and regards,
>>Parul Kudtarkar
>>
>>> Wow 330,000 is a lot. a large portion of genes are likely to be partial
>>>at
>>> best.  You should seriously consider using mRNAseq to capture those by
>>> using maker's est_gff option to pass in results from cufflinks or
>>>trinity.
>>>  Also I wouldn't even try to annotate contigs less than 10kb in size,
>>>just
>>> have maker skip them by setting the min_contig filter in the
>>> maker_opts.ctl file.
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>
>>>
>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>
>>>>Thanks for the guidance Carson, total contig size is 330,611 with N50
>>>> of
>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>> when
>>>>filtering based on AED score 0.75 there are no gene models predicted
>>>>despite the model_gff file has few genes with scores less than 0.75?
>>>>
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>
>>>>> There are certain characteristics that are apparent in this contig.
>>>>First
>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>have
>>>>very short ESTs, and because of the lengths you are probably getting
>>>>many
>>>>> of them to align spuriously which produces very short gene models
>>>>> that
>>>>are
>>>>> more than likely false positives or at the very least just a piece of
>>>>>a
>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>> unless
>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your protein
>>>>alignments also seem to be few and far between.  You probably need to
>>>>add
>>>>> more proteins from a couple of related species, and you might
>>>>> consider
>>>>using protein2genome rather than est2genome as a predictor if you are
>>>>still working to generate a training set. Also est2genome produced
>>>>models
>>>>> almost always have an AED score near 0 so mixing est2genome with the
>>>>AED_threshold with such limited protein support does create an
>>>>artificial
>>>>> bias to get back very short and incomplete models.
>>>>>
>>>>> How many contigs do you have in total and what is the N50 value for
>>>>>the
>>>>assembly? If you have a large number of very short contigs, you will
>>>> get
>>>>very inflated gene counts because you get genes split across contigs
>>>> and
>>>>many contigs tend t be subtle rearrangements of other contigs just
>>>>assembled in a slightly different way (so you can get bits and pieces
>>>> of
>>>>the same genes just rearranged).  This scenario is another confounding
>>>>factor if using the est2genome predictor with short ESTs.  I would
>>>>recommend running CEGMA to get an estimate for the genome completeness
>>>>as
>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>produced
>>>>> is a percent of genes that are found complete (end to end) vs those
>>>>> that
>>>>are partial.  CEGMA identifies house keeping genes that tend to be
>>>>shorter
>>>>> and less intron rich than other genes in the genome, so if CEGMA
>>>>> gives
>>>>> a
>>>>high partial percentage and a low complete percentage, then this
>>>> pattern
>>>>can be expected to be even more exaggerated for other genes in the
>>>>genome.
>>>>>
>>>>> If your genome is highly fragmented or proteins do not align well
>>>>> then
>>>>there are other strategies.  For example, some vertebrate genomes end
>>>> up
>>>>having extremely fragmented assemblies (on the order of 100,000
>>>>contigs),
>>>>> and if they are distantly related to other annotated species few
>>>>proteins
>>>>> may align to the contigs because the introns in the alignments tend
>>>>> to
>>>>be
>>>>> so long and exons so short that it pushes down the significance
>>>>> scores
>>>>too
>>>>> much.  In those cases heavy mRNAseq seems to be the best if not only
>>>>> way
>>>>to get enough evidence to stitch gene models together.
>>>>>
>>>>> Thanks,
>>>>> Carson
>>>>>
>>>>>
>>>>>
>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>
>>>>>>Dear Carson and Daniel,
>>>>>>Thanks. I ran sample file for filtering genes based on AED score. The
>>>>input gff3 file was provided to option model_pred(see attached file
>>>>Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>> least
>>>>>> 5
>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>> predicted
>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>attached
>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>Thanks and regards,
>>>>>>Parul Kudtarkar
>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you just
>>>>>>>want
>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>maker.
>>>>>>>On
>>>>>>> the other hand, if you are trying to build a dataset for training
>>>>>>> gene
>>>>predictors, use the maker2zff script for generating a filtered dataset
>>>>>>>for
>>>>>>> SNAP training.  There are a number of filters available. Just call
>>>>>>> the
>>>>script once without parameters to see the options.
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>>>Hi Parul,
>>>>>>>>I think the way you described (with the maker_opts.ctl file) is how
>>>>you
>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>Daniel
>>>>>>>>Daniel Ence
>>>>>>>>Graduate Student
>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>University of Utah
>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>________________________________________
>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul Kudtarkar
>>>>[parulk at caltech.edu]
>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>To: Parul Kudtarkar
>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>Also, are there any other parameters that are required when
>>>>>>>>filtering
>>>>based on AED score?
>>>>>>>>> Hello Carson,
>>>>>>>>> Just to confirm, Is there a script that would filter gene models
>>>>>>>>>at
>>>>specific AED score.
>>>>>>>>> Alternatively if I were to do this within maker with regards to
>>>>>>>>>parameters
>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted genes
>>>>>>>>>gff3
>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and 1
>>>>>>>>>> is
>>>>worst
>>>>>>>>>> as
>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
>>>>>>>>>> parameter
>>>>to
>>>>>>>>>> require better matching to the evidence by setting it closer to
>>>>>>>>>>0.
>>>>>>>>>>You
>>>>>>>>>> can
>>>>>>>>>> also try to increase protein homology evidence as some of your
>>>>calls
>>>>>>>>>>may
>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>> --Carson
>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>wrote:
>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>For gene-prediction I get training data-set from evidence based
>>>>prediction, I use this data-set to train SNAP as well as Augustus
>>>>predictions, followed by boot-strapping. I would typically expect
>>>>20-30K
>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>> indicating
>>>>>>>>>>> too
>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>predication/script to retain predictions with AED score 1 and if
>>>>yes
>>>>>>>>>>>how
>>>>>>>>>>>to go about this?
>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>--
>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>>ab
>>>>>>>>>>>.o
>>>>rg
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>>--
>>>>>>>>Scientific Programmer
>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>Beckman Institute,
>>>>>>>>California Institute of Technology
>>>>>>>>http://www.spbase.org
>>>>>>>>_______________________________________________
>>>>>>>>maker-devel mailing list
>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.
>>>>>>>>or
>>>>>>>>g
>>>>_______________________________________________
>>>>>>>>maker-devel mailing list
>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.
>>>>>>>>or
>>>>>>>>g
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>
>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.o
>>>>>>>rg
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>>
>>
>>
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org
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From dence at genetics.utah.edu  Thu Dec  6 12:17:57 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Thu, 6 Dec 2012 19:17:57 +0000
Subject: [maker-devel] AED score
In-Reply-To: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
References: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>

Hi Parul, 

In step one, if protein2genome isn't turned on, then the protein alignments wont be used to generate gene models. Carson said before to use protein2genome to generate gene models for your trainings set, but you should know that those data aren't being used right now. 

In step 2, you can include the est and protein evidence that you used in step one, and the ab-initio predictors will takes those data as hints to guide their predictions. Also, are you reannotating human here? I'm just wondering why the snap file is called Pult, but the augustus species model is human. Also, I think you should include the same masking files from step 1, otherwise the ab-initio predictors will be predicting on the unmasked sequence which will give you many spurious predictions. 

In step 3, I'm not certain what you mean by boot-strapping. The control file you sent for step 3 will just pass-through all of the data from before. 

In step 4, I think what you'll get is pretty close to what you already had in step 3. The gene models from step 3 are already based on the est and protein data from step 1, so without giving any different evidence or ab-initio predictors, I think that you will just get the same gene models that you got from step 3. Those gene models are what you should be using to train snap. Also, is this the same genome as in the other steps? The genome file here is called genome.linear.fa, but before it was called genome.fa.

Step 5. So maker uses both evidence and ab-initio predictions to create models. If you don't give any evidence (EST or protein) maker will not annotate any gene models. You have also changed the augustus species model in this step, but I don't know what you've gained by going from one species to another. You should be training augustus with the gene models and then creating a new species model in augustus. As I understand it, the filter only operates on gene models, not ab-initio predictions or alignments, so it probably isn't doing anything the way you have it set. 

Step 6. I think step 5 and 6 should be combined. I don't know what you mean by boot-strapping here too. 

Hopefully that clears up some of the confusion with how maker works. Carson will probably have a lot of suggestions too. 

Thanks,
Daniel 

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________________
From: Parul Kudtarkar [parulk at caltech.edu]
Sent: Thursday, December 06, 2012 10:08 AM
To: carsonhh at gmail.com
Cc: Daniel Ence; maker-devel at yandell-lab.org
Subject: Re: [maker-devel] AED score

Hi Carson,

Once again thanks for a quick response. We expect to get 25,000 to 30,000
genes.
Here are the step
Step1. EST and proteins are used to predict gene-models. the resulting
file is used as training data-set for SNAP in step2. est2genome is turned
ON
Step2. Augustus and SNAP is used to predict genes.
Step3. The results are re-annoated(boot-strap)
Step4. EST and proteins are used to predict gene-models. The gff file from
step3. is used as model_gff. The resulting file is used as training
data-set for SNAP in step2
Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
contig_size to 10kb

Thanks and regards,
Parul Kudtarkar

I have attached the configuration file for each step.
> Your output has no genes.  They've all been filtered out.  The gene
predictions are left for reference purposes, but there are no gene models
> in the file.  You need to look at the type columns in the GFF3 file -->
match/match_part features are evidence and reference data but not
models.
> All models will have types gene/mRNA/exon/CDS.  For example if you just
want gene models in your file you can use the gff3_merge script with the
-g option, and it will only print out the gene models.
> I think you may be misinterpreting what is happening at different steps,
as well as how to read the result files.  Could you give me a detailed
explanation of what you expect to get back together with your control
files and I can walk you through the configuration, and indicate what to
expect.  Also what was the report like from CEGMA. Could you include the
report file that shows how complete your genome is and how fragmented it
is?
> Thanks,
> Carson
> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>Dear Carson,
>>Thanks for a quick response. keep_preds is set to 0
>>Though for previous step(ab-intio gene predictions keep_preds was set to
1, see Scaffold1_input.gff). I have also attached the output file
Scaffold1_out.gff.
>>Please advice.
>>Thanks and regards,
>>Parul Kudtarkar
>>> You should always get all predictions, but should only get models
(match/match_part) with AED scores less than 0.5.  You should never get
>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
keep_preds set.
>>> Do you have keeps_preds set or gene models with AED values above your
threshold (not match/match_part features)?  If the first one is the
>>>case,
>>> just set it to 0.  If the second one in the case, could you send me
example GFF3?
>>> Thanks,
>>> Carson
>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>Dear Carson,
>>>>Thanks once again, we have limited experimental data with very short
>>>> ESTs.
>>>>CEGMA is useful for us to gauge our gene-model.
>>>>On a different note to re-annotate genome(post evidence based
>>>>prediction(used as training dataset)and abinitio gene-prediction).
Here
>>>>are the control parameters I am using with AED score set to 0.5,
>>>> however
>>>> I
>>>>get predictions that includes the ones with AED score of 1.00 in
>>>> resulting
>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>> initial
>>>>gff3 file.
>>>>#-----Genome (Required for De-Novo Annotation)
>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>> eukaryotic
>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
no
>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>> no
>>>>#-----MAKER Behavior Options
>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
0
>>>>and 1)
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>partial
>>>>>at
>>>>> best.  You should seriously consider using mRNAseq to capture those
by
>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>trinity.
>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
size,
>>>>>just
>>>>> have maker skip them by setting the min_contig filter in the
maker_opts.ctl file.
>>>>> Thanks,
>>>>> Carson
>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
N50
>>>>>> of
>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>> when
>>>>>>filtering based on AED score 0.75 there are no gene models predicted
despite the model_gff file has few genes with scores less than 0.75?
Thanks and regards,
>>>>>>Parul Kudtarkar
>>>>>>> There are certain characteristics that are apparent in this
contig.
>>>>>>First
>>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>>have
>>>>>>very short ESTs, and because of the lengths you are probably getting
many
>>>>>>> of them to align spuriously which produces very short gene models
that
>>>>>>are
>>>>>>> more than likely false positives or at the very least just a piece
>>>>>>>of
>>>>>>>a
>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>> unless
>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>> protein
>>>>>>alignments also seem to be few and far between.  You probably need
to
>>>>>>add
>>>>>>> more proteins from a couple of related species, and you might
consider
>>>>>>using protein2genome rather than est2genome as a predictor if you
are
>>>>>>still working to generate a training set. Also est2genome produced
models
>>>>>>> almost always have an AED score near 0 so mixing est2genome with
the
>>>>>>AED_threshold with such limited protein support does create an
artificial
>>>>>>> bias to get back very short and incomplete models.
>>>>>>> How many contigs do you have in total and what is the N50 value
for
>>>>>>>the
>>>>>>assembly? If you have a large number of very short contigs, you will
>>>>>> get
>>>>>>very inflated gene counts because you get genes split across contigs
>>>>>> and
>>>>>>many contigs tend t be subtle rearrangements of other contigs just
assembled in a slightly different way (so you can get bits and
pieces
>>>>>> of
>>>>>>the same genes just rearranged).  This scenario is another
>>>>>> confounding
>>>>>>factor if using the est2genome predictor with short ESTs.  I would
recommend running CEGMA to get an estimate for the genome
>>>>>> completeness
>>>>>>as
>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>produced
>>>>>>> is a percent of genes that are found complete (end to end) vs
those
>>>>>>> that
>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
shorter
>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
gives
>>>>>>> a
>>>>>>high partial percentage and a low complete percentage, then this
>>>>>> pattern
>>>>>>can be expected to be even more exaggerated for other genes in the
genome.
>>>>>>> If your genome is highly fragmented or proteins do not align well
then
>>>>>>there are other strategies.  For example, some vertebrate genomes
end
>>>>>> up
>>>>>>having extremely fragmented assemblies (on the order of 100,000
contigs),
>>>>>>> and if they are distantly related to other annotated species few
>>>>>>proteins
>>>>>>> may align to the contigs because the introns in the alignments
tend
>>>>>>> to
>>>>>>be
>>>>>>> so long and exons so short that it pushes down the significance
scores
>>>>>>too
>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
only
>>>>>>> way
>>>>>>to get enough evidence to stitch gene models together.
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>Dear Carson and Daniel,
>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
The
>>>>>>input gff3 file was provided to option model_pred(see attached file
Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>> least
>>>>>>>> 5
>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>> predicted
>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>attached
>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>Thanks and regards,
>>>>>>>>Parul Kudtarkar
>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>just
>>>>>>>>>want
>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>maker.
>>>>>>>>>On
>>>>>>>>> the other hand, if you are trying to build a dataset for
training
>>>>>>>>> gene
>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>> dataset
>>>>>>>>>for
>>>>>>>>> SNAP training.  There are a number of filters available. Just
call
>>>>>>>>> the
>>>>>>script once without parameters to see the options.
>>>>>>>>> Thanks,
>>>>>>>>> Carson
>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>wrote:
>>>>>>>>>>Hi Parul,
>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
how
>>>>>>you
>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>Daniel
>>>>>>>>>>Daniel Ence
>>>>>>>>>>Graduate Student
>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>University of Utah
>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>________________________________________
>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>> Kudtarkar
>>>>>>[parulk at caltech.edu]
>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>Also, are there any other parameters that are required when
filtering
>>>>>>based on AED score?
>>>>>>>>>>> Hello Carson,
>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
models
>>>>>>>>>>>at
>>>>>>specific AED score.
>>>>>>>>>>> Alternatively if I were to do this within maker with regards
to
>>>>>>>>>>>parameters
>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>genes
>>>>>>>>>>>gff3
>>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>>Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
1
>>>>>>>>>>>> is
>>>>>>worst
>>>>>>>>>>>> as
>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
parameter
>>>>>>to
>>>>>>>>>>>> require better matching to the evidence by setting it closer
to
>>>>>>>>>>>>0.
>>>>>>>>>>>>You
>>>>>>>>>>>> can
>>>>>>>>>>>> also try to increase protein homology evidence as some of
your
>>>>>>calls
>>>>>>>>>>>>may
>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>> --Carson
>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>> based
>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
predictions, followed by boot-strapping. I would typically expect
20-30K
>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>> indicating
>>>>>>>>>>>>> too
>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>predication/script to retain predictions with AED score 1 and if yes
>>>>>>>>>>>>>how
>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>--
>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
-l
>>>>>>>>>>>>>ab
>>>>>>>>>>>>>.o
>>>>>>rg
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>--
>>>>>>>>>>Scientific Programmer
>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>Beckman Institute,
>>>>>>>>>>California Institute of Technology
>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
b.
>>>>>>>>>>or
>>>>>>>>>>g
>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
b.
>>>>>>>>>>or
>>>>>>>>>>g
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
.o
>>>>>>>>>rg
>>>>>>>>--
>>>>>>>>Scientific Programmer
>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>Beckman Institute,
>>>>>>>>California Institute of Technology
>>>>>>>>http://www.spbase.org
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org

--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org





From parulk at caltech.edu  Thu Dec  6 13:28:18 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Thu, 6 Dec 2012 12:28:18 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>
References: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>
Message-ID: <2337.131.215.15.234.1354825698.squirrel@webmail.caltech.edu>

Dear Daniel,

Thanks for clearing doubts. For augustus I am using the closest
species(lamprey) to species we are annotating. For SNAP the training
set(hmm file) is generated using predictions made from evidence based
gene-predictions(sorry the file name was mis-leading). I think STEP 3-6
are not required(more or less repetitive without further improving
genemodel). Post Step 1(generating training data for SNAP using evidence
based prediction) and Step2(ab-initio gene-prediction using SNAP and
augustus) do you have recommendations for further improving the gene
model?

Thanks and regards,
Parul Kudtarkar

> Hi Parul,
>
> In step one, if protein2genome isn't turned on, then the protein
> alignments wont be used to generate gene models. Carson said before to use
> protein2genome to generate gene models for your trainings set, but you
> should know that those data aren't being used right now.
>
> In step 2, you can include the est and protein evidence that you used in
> step one, and the ab-initio predictors will takes those data as hints to
> guide their predictions. Also, are you reannotating human here? I'm just
> wondering why the snap file is called Pult, but the augustus species model
> is human. Also, I think you should include the same masking files from
> step 1, otherwise the ab-initio predictors will be predicting on the
> unmasked sequence which will give you many spurious predictions.
>
> In step 3, I'm not certain what you mean by boot-strapping. The control
> file you sent for step 3 will just pass-through all of the data from
> before.
>
> In step 4, I think what you'll get is pretty close to what you already had
> in step 3. The gene models from step 3 are already based on the est and
> protein data from step 1, so without giving any different evidence or
> ab-initio predictors, I think that you will just get the same gene models
> that you got from step 3. Those gene models are what you should be using
> to train snap. Also, is this the same genome as in the other steps? The
> genome file here is called genome.linear.fa, but before it was called
> genome.fa.
>
> Step 5. So maker uses both evidence and ab-initio predictions to create
> models. If you don't give any evidence (EST or protein) maker will not
> annotate any gene models. You have also changed the augustus species model
> in this step, but I don't know what you've gained by going from one
> species to another. You should be training augustus with the gene models
> and then creating a new species model in augustus. As I understand it, the
> filter only operates on gene models, not ab-initio predictions or
> alignments, so it probably isn't doing anything the way you have it set.
>
> Step 6. I think step 5 and 6 should be combined. I don't know what you
> mean by boot-strapping here too.
>
> Hopefully that clears up some of the confusion with how maker works.
> Carson will probably have a lot of suggestions too.
>
> Thanks,
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 10:08 AM
> To: carsonhh at gmail.com
> Cc: Daniel Ence; maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
>
> Hi Carson,
>
> Once again thanks for a quick response. We expect to get 25,000 to 30,000
> genes.
> Here are the step
> Step1. EST and proteins are used to predict gene-models. the resulting
> file is used as training data-set for SNAP in step2. est2genome is turned
> ON
> Step2. Augustus and SNAP is used to predict genes.
> Step3. The results are re-annoated(boot-strap)
> Step4. EST and proteins are used to predict gene-models. The gff file from
> step3. is used as model_gff. The resulting file is used as training
> data-set for SNAP in step2
> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
> contig_size to 10kb
>
> Thanks and regards,
> Parul Kudtarkar
>
> I have attached the configuration file for each step.
>> Your output has no genes.  They've all been filtered out.  The gene
> predictions are left for reference purposes, but there are no gene models
>> in the file.  You need to look at the type columns in the GFF3 file -->
> match/match_part features are evidence and reference data but not
> models.
>> All models will have types gene/mRNA/exon/CDS.  For example if you just
> want gene models in your file you can use the gff3_merge script with the
> -g option, and it will only print out the gene models.
>> I think you may be misinterpreting what is happening at different steps,
> as well as how to read the result files.  Could you give me a detailed
> explanation of what you expect to get back together with your control
> files and I can walk you through the configuration, and indicate what to
> expect.  Also what was the report like from CEGMA. Could you include the
> report file that shows how complete your genome is and how fragmented it
> is?
>> Thanks,
>> Carson
>> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>Dear Carson,
>>>Thanks for a quick response. keep_preds is set to 0
>>>Though for previous step(ab-intio gene predictions keep_preds was set to
> 1, see Scaffold1_input.gff). I have also attached the output file
> Scaffold1_out.gff.
>>>Please advice.
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>> You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
>>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>>>> Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the
>>>>case,
>>>> just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>>>> Thanks,
>>>> Carson
>>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>Dear Carson,
>>>>>Thanks once again, we have limited experimental data with very short
>>>>> ESTs.
>>>>>CEGMA is useful for us to gauge our gene-model.
>>>>>On a different note to re-annotate genome(post evidence based
>>>>>prediction(used as training dataset)and abinitio gene-prediction).
> Here
>>>>>are the control parameters I am using with AED score set to 0.5,
>>>>> however
>>>>> I
>>>>>get predictions that includes the ones with AED score of 1.00 in
>>>>> resulting
>>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>> initial
>>>>>gff3 file.
>>>>>#-----Genome (Required for De-Novo Annotation)
>>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>> eukaryotic
>>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
> no
>>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>> no
>>>>>#-----MAKER Behavior Options
>>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
> 0
>>>>>and 1)
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>partial
>>>>>>at
>>>>>> best.  You should seriously consider using mRNAseq to capture those
> by
>>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>>trinity.
>>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
> size,
>>>>>>just
>>>>>> have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>>>>>> Thanks,
>>>>>> Carson
>>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
> N50
>>>>>>> of
>>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>> when
>>>>>>>filtering based on AED score 0.75 there are no gene models predicted
> despite the model_gff file has few genes with scores less than 0.75?
> Thanks and regards,
>>>>>>>Parul Kudtarkar
>>>>>>>> There are certain characteristics that are apparent in this
> contig.
>>>>>>>First
>>>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>>>have
>>>>>>>very short ESTs, and because of the lengths you are probably getting
> many
>>>>>>>> of them to align spuriously which produces very short gene models
> that
>>>>>>>are
>>>>>>>> more than likely false positives or at the very least just a piece
>>>>>>>>of
>>>>>>>>a
>>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>>> unless
>>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>> protein
>>>>>>>alignments also seem to be few and far between.  You probably need
> to
>>>>>>>add
>>>>>>>> more proteins from a couple of related species, and you might
> consider
>>>>>>>using protein2genome rather than est2genome as a predictor if you
> are
>>>>>>>still working to generate a training set. Also est2genome produced
> models
>>>>>>>> almost always have an AED score near 0 so mixing est2genome with
> the
>>>>>>>AED_threshold with such limited protein support does create an
> artificial
>>>>>>>> bias to get back very short and incomplete models.
>>>>>>>> How many contigs do you have in total and what is the N50 value
> for
>>>>>>>>the
>>>>>>>assembly? If you have a large number of very short contigs, you will
>>>>>>> get
>>>>>>>very inflated gene counts because you get genes split across contigs
>>>>>>> and
>>>>>>>many contigs tend t be subtle rearrangements of other contigs just
> assembled in a slightly different way (so you can get bits and
> pieces
>>>>>>> of
>>>>>>>the same genes just rearranged).  This scenario is another
>>>>>>> confounding
>>>>>>>factor if using the est2genome predictor with short ESTs.  I would
> recommend running CEGMA to get an estimate for the genome
>>>>>>> completeness
>>>>>>>as
>>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>>produced
>>>>>>>> is a percent of genes that are found complete (end to end) vs
> those
>>>>>>>> that
>>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
> shorter
>>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
> gives
>>>>>>>> a
>>>>>>>high partial percentage and a low complete percentage, then this
>>>>>>> pattern
>>>>>>>can be expected to be even more exaggerated for other genes in the
> genome.
>>>>>>>> If your genome is highly fragmented or proteins do not align well
> then
>>>>>>>there are other strategies.  For example, some vertebrate genomes
> end
>>>>>>> up
>>>>>>>having extremely fragmented assemblies (on the order of 100,000
> contigs),
>>>>>>>> and if they are distantly related to other annotated species few
>>>>>>>proteins
>>>>>>>> may align to the contigs because the introns in the alignments
> tend
>>>>>>>> to
>>>>>>>be
>>>>>>>> so long and exons so short that it pushes down the significance
> scores
>>>>>>>too
>>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
> only
>>>>>>>> way
>>>>>>>to get enough evidence to stitch gene models together.
>>>>>>>> Thanks,
>>>>>>>> Carson
>>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>>Dear Carson and Daniel,
>>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
> The
>>>>>>>input gff3 file was provided to option model_pred(see attached file
> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>> least
>>>>>>>>> 5
>>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>>> predicted
>>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>>attached
>>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>Thanks and regards,
>>>>>>>>>Parul Kudtarkar
>>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>just
>>>>>>>>>>want
>>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>>maker.
>>>>>>>>>>On
>>>>>>>>>> the other hand, if you are trying to build a dataset for
> training
>>>>>>>>>> gene
>>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>>> dataset
>>>>>>>>>>for
>>>>>>>>>> SNAP training.  There are a number of filters available. Just
> call
>>>>>>>>>> the
>>>>>>>script once without parameters to see the options.
>>>>>>>>>> Thanks,
>>>>>>>>>> Carson
>>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>wrote:
>>>>>>>>>>>Hi Parul,
>>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
> how
>>>>>>>you
>>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>>Daniel
>>>>>>>>>>>Daniel Ence
>>>>>>>>>>>Graduate Student
>>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>>University of Utah
>>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>>________________________________________
>>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>> Kudtarkar
>>>>>>>[parulk at caltech.edu]
>>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>>Also, are there any other parameters that are required when
> filtering
>>>>>>>based on AED score?
>>>>>>>>>>>> Hello Carson,
>>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
> models
>>>>>>>>>>>>at
>>>>>>>specific AED score.
>>>>>>>>>>>> Alternatively if I were to do this within maker with regards
> to
>>>>>>>>>>>>parameters
>>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>genes
>>>>>>>>>>>>gff3
>>>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
> 1
>>>>>>>>>>>>> is
>>>>>>>worst
>>>>>>>>>>>>> as
>>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
> parameter
>>>>>>>to
>>>>>>>>>>>>> require better matching to the evidence by setting it closer
> to
>>>>>>>>>>>>>0.
>>>>>>>>>>>>>You
>>>>>>>>>>>>> can
>>>>>>>>>>>>> also try to increase protein homology evidence as some of
> your
>>>>>>>calls
>>>>>>>>>>>>>may
>>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>>> --Carson
>>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>> based
>>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
> predictions, followed by boot-strapping. I would typically expect
> 20-30K
>>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>> indicating
>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>>predication/script to retain predictions with AED score 1 and if yes
>>>>>>>>>>>>>>how
>>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>>--
>>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
> -l
>>>>>>>>>>>>>>ab
>>>>>>>>>>>>>>.o
>>>>>>>rg
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>--
>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>>>>>>or
>>>>>>>>>>>g
>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>>>>>>or
>>>>>>>>>>>g
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
> .o
>>>>>>>>>>rg
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From dence at genetics.utah.edu  Thu Dec  6 14:35:04 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Thu, 6 Dec 2012 21:35:04 +0000
Subject: [maker-devel] AED score
In-Reply-To: <2337.131.215.15.234.1354825698.squirrel@webmail.caltech.edu>
References: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>,
	<2337.131.215.15.234.1354825698.squirrel@webmail.caltech.edu>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB59B1@mxb2.hg.genetics.utah.edu>

Hi Parul, 
I dont' really have many suggestions for improving the gene models after the annotation is done. Annotation is very dependent on the data you have at hand (the assembly, ESTs and proteins). One thing you could do to get more annotations is to run something like iprscan on the ab-initio predictions that didn't overlap any evidence and look for predictions that contain a pfam domain. Then you can send those predictions back through maker and promote them to gene model status. 

Do you have the CEGMA results that Carson asked about? That really will tell you what kind of annotation results you can expect. If the assembly doesn't have an N50 greater than the expected median gene size, then you can't expect very good results from automated annotation. 

Thanks,
Daniel 

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________________
From: Parul Kudtarkar [parulk at caltech.edu]
Sent: Thursday, December 06, 2012 1:28 PM
To: Daniel Ence
Cc: maker-devel at yandell-lab.org
Subject: Re: [maker-devel] AED score

Dear Daniel,

Thanks for clearing doubts. For augustus I am using the closest
species(lamprey) to species we are annotating. For SNAP the training
set(hmm file) is generated using predictions made from evidence based
gene-predictions(sorry the file name was mis-leading). I think STEP 3-6
are not required(more or less repetitive without further improving
genemodel). Post Step 1(generating training data for SNAP using evidence
based prediction) and Step2(ab-initio gene-prediction using SNAP and
augustus) do you have recommendations for further improving the gene
model?

Thanks and regards,
Parul Kudtarkar

> Hi Parul,
>
> In step one, if protein2genome isn't turned on, then the protein
> alignments wont be used to generate gene models. Carson said before to use
> protein2genome to generate gene models for your trainings set, but you
> should know that those data aren't being used right now.
>
> In step 2, you can include the est and protein evidence that you used in
> step one, and the ab-initio predictors will takes those data as hints to
> guide their predictions. Also, are you reannotating human here? I'm just
> wondering why the snap file is called Pult, but the augustus species model
> is human. Also, I think you should include the same masking files from
> step 1, otherwise the ab-initio predictors will be predicting on the
> unmasked sequence which will give you many spurious predictions.
>
> In step 3, I'm not certain what you mean by boot-strapping. The control
> file you sent for step 3 will just pass-through all of the data from
> before.
>
> In step 4, I think what you'll get is pretty close to what you already had
> in step 3. The gene models from step 3 are already based on the est and
> protein data from step 1, so without giving any different evidence or
> ab-initio predictors, I think that you will just get the same gene models
> that you got from step 3. Those gene models are what you should be using
> to train snap. Also, is this the same genome as in the other steps? The
> genome file here is called genome.linear.fa, but before it was called
> genome.fa.
>
> Step 5. So maker uses both evidence and ab-initio predictions to create
> models. If you don't give any evidence (EST or protein) maker will not
> annotate any gene models. You have also changed the augustus species model
> in this step, but I don't know what you've gained by going from one
> species to another. You should be training augustus with the gene models
> and then creating a new species model in augustus. As I understand it, the
> filter only operates on gene models, not ab-initio predictions or
> alignments, so it probably isn't doing anything the way you have it set.
>
> Step 6. I think step 5 and 6 should be combined. I don't know what you
> mean by boot-strapping here too.
>
> Hopefully that clears up some of the confusion with how maker works.
> Carson will probably have a lot of suggestions too.
>
> Thanks,
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 10:08 AM
> To: carsonhh at gmail.com
> Cc: Daniel Ence; maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
>
> Hi Carson,
>
> Once again thanks for a quick response. We expect to get 25,000 to 30,000
> genes.
> Here are the step
> Step1. EST and proteins are used to predict gene-models. the resulting
> file is used as training data-set for SNAP in step2. est2genome is turned
> ON
> Step2. Augustus and SNAP is used to predict genes.
> Step3. The results are re-annoated(boot-strap)
> Step4. EST and proteins are used to predict gene-models. The gff file from
> step3. is used as model_gff. The resulting file is used as training
> data-set for SNAP in step2
> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
> contig_size to 10kb
>
> Thanks and regards,
> Parul Kudtarkar
>
> I have attached the configuration file for each step.
>> Your output has no genes.  They've all been filtered out.  The gene
> predictions are left for reference purposes, but there are no gene models
>> in the file.  You need to look at the type columns in the GFF3 file -->
> match/match_part features are evidence and reference data but not
> models.
>> All models will have types gene/mRNA/exon/CDS.  For example if you just
> want gene models in your file you can use the gff3_merge script with the
> -g option, and it will only print out the gene models.
>> I think you may be misinterpreting what is happening at different steps,
> as well as how to read the result files.  Could you give me a detailed
> explanation of what you expect to get back together with your control
> files and I can walk you through the configuration, and indicate what to
> expect.  Also what was the report like from CEGMA. Could you include the
> report file that shows how complete your genome is and how fragmented it
> is?
>> Thanks,
>> Carson
>> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>Dear Carson,
>>>Thanks for a quick response. keep_preds is set to 0
>>>Though for previous step(ab-intio gene predictions keep_preds was set to
> 1, see Scaffold1_input.gff). I have also attached the output file
> Scaffold1_out.gff.
>>>Please advice.
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>> You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
>>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>>>> Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the
>>>>case,
>>>> just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>>>> Thanks,
>>>> Carson
>>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>Dear Carson,
>>>>>Thanks once again, we have limited experimental data with very short
>>>>> ESTs.
>>>>>CEGMA is useful for us to gauge our gene-model.
>>>>>On a different note to re-annotate genome(post evidence based
>>>>>prediction(used as training dataset)and abinitio gene-prediction).
> Here
>>>>>are the control parameters I am using with AED score set to 0.5,
>>>>> however
>>>>> I
>>>>>get predictions that includes the ones with AED score of 1.00 in
>>>>> resulting
>>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>> initial
>>>>>gff3 file.
>>>>>#-----Genome (Required for De-Novo Annotation)
>>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>> eukaryotic
>>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
> no
>>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>> no
>>>>>#-----MAKER Behavior Options
>>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
> 0
>>>>>and 1)
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>partial
>>>>>>at
>>>>>> best.  You should seriously consider using mRNAseq to capture those
> by
>>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>>trinity.
>>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
> size,
>>>>>>just
>>>>>> have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>>>>>> Thanks,
>>>>>> Carson
>>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
> N50
>>>>>>> of
>>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>> when
>>>>>>>filtering based on AED score 0.75 there are no gene models predicted
> despite the model_gff file has few genes with scores less than 0.75?
> Thanks and regards,
>>>>>>>Parul Kudtarkar
>>>>>>>> There are certain characteristics that are apparent in this
> contig.
>>>>>>>First
>>>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>>>have
>>>>>>>very short ESTs, and because of the lengths you are probably getting
> many
>>>>>>>> of them to align spuriously which produces very short gene models
> that
>>>>>>>are
>>>>>>>> more than likely false positives or at the very least just a piece
>>>>>>>>of
>>>>>>>>a
>>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>>> unless
>>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>> protein
>>>>>>>alignments also seem to be few and far between.  You probably need
> to
>>>>>>>add
>>>>>>>> more proteins from a couple of related species, and you might
> consider
>>>>>>>using protein2genome rather than est2genome as a predictor if you
> are
>>>>>>>still working to generate a training set. Also est2genome produced
> models
>>>>>>>> almost always have an AED score near 0 so mixing est2genome with
> the
>>>>>>>AED_threshold with such limited protein support does create an
> artificial
>>>>>>>> bias to get back very short and incomplete models.
>>>>>>>> How many contigs do you have in total and what is the N50 value
> for
>>>>>>>>the
>>>>>>>assembly? If you have a large number of very short contigs, you will
>>>>>>> get
>>>>>>>very inflated gene counts because you get genes split across contigs
>>>>>>> and
>>>>>>>many contigs tend t be subtle rearrangements of other contigs just
> assembled in a slightly different way (so you can get bits and
> pieces
>>>>>>> of
>>>>>>>the same genes just rearranged).  This scenario is another
>>>>>>> confounding
>>>>>>>factor if using the est2genome predictor with short ESTs.  I would
> recommend running CEGMA to get an estimate for the genome
>>>>>>> completeness
>>>>>>>as
>>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>>produced
>>>>>>>> is a percent of genes that are found complete (end to end) vs
> those
>>>>>>>> that
>>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
> shorter
>>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
> gives
>>>>>>>> a
>>>>>>>high partial percentage and a low complete percentage, then this
>>>>>>> pattern
>>>>>>>can be expected to be even more exaggerated for other genes in the
> genome.
>>>>>>>> If your genome is highly fragmented or proteins do not align well
> then
>>>>>>>there are other strategies.  For example, some vertebrate genomes
> end
>>>>>>> up
>>>>>>>having extremely fragmented assemblies (on the order of 100,000
> contigs),
>>>>>>>> and if they are distantly related to other annotated species few
>>>>>>>proteins
>>>>>>>> may align to the contigs because the introns in the alignments
> tend
>>>>>>>> to
>>>>>>>be
>>>>>>>> so long and exons so short that it pushes down the significance
> scores
>>>>>>>too
>>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
> only
>>>>>>>> way
>>>>>>>to get enough evidence to stitch gene models together.
>>>>>>>> Thanks,
>>>>>>>> Carson
>>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>>Dear Carson and Daniel,
>>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
> The
>>>>>>>input gff3 file was provided to option model_pred(see attached file
> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>> least
>>>>>>>>> 5
>>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>>> predicted
>>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>>attached
>>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>Thanks and regards,
>>>>>>>>>Parul Kudtarkar
>>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>just
>>>>>>>>>>want
>>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>>maker.
>>>>>>>>>>On
>>>>>>>>>> the other hand, if you are trying to build a dataset for
> training
>>>>>>>>>> gene
>>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>>> dataset
>>>>>>>>>>for
>>>>>>>>>> SNAP training.  There are a number of filters available. Just
> call
>>>>>>>>>> the
>>>>>>>script once without parameters to see the options.
>>>>>>>>>> Thanks,
>>>>>>>>>> Carson
>>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>wrote:
>>>>>>>>>>>Hi Parul,
>>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
> how
>>>>>>>you
>>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>>Daniel
>>>>>>>>>>>Daniel Ence
>>>>>>>>>>>Graduate Student
>>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>>University of Utah
>>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>>________________________________________
>>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>> Kudtarkar
>>>>>>>[parulk at caltech.edu]
>>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>>Also, are there any other parameters that are required when
> filtering
>>>>>>>based on AED score?
>>>>>>>>>>>> Hello Carson,
>>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
> models
>>>>>>>>>>>>at
>>>>>>>specific AED score.
>>>>>>>>>>>> Alternatively if I were to do this within maker with regards
> to
>>>>>>>>>>>>parameters
>>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>genes
>>>>>>>>>>>>gff3
>>>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
> 1
>>>>>>>>>>>>> is
>>>>>>>worst
>>>>>>>>>>>>> as
>>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
> parameter
>>>>>>>to
>>>>>>>>>>>>> require better matching to the evidence by setting it closer
> to
>>>>>>>>>>>>>0.
>>>>>>>>>>>>>You
>>>>>>>>>>>>> can
>>>>>>>>>>>>> also try to increase protein homology evidence as some of
> your
>>>>>>>calls
>>>>>>>>>>>>>may
>>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>>> --Carson
>>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>> based
>>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
> predictions, followed by boot-strapping. I would typically expect
> 20-30K
>>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>> indicating
>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>>predication/script to retain predictions with AED score 1 and if yes
>>>>>>>>>>>>>>how
>>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>>--
>>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
> -l
>>>>>>>>>>>>>>ab
>>>>>>>>>>>>>>.o
>>>>>>>rg
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>--
>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>>>>>>or
>>>>>>>>>>>g
>>>>>>>_______________________________________________
>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>>>>>>or
>>>>>>>>>>>g
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
> .o
>>>>>>>>>>rg
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From parulk at caltech.edu  Thu Dec  6 15:51:42 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Thu, 6 Dec 2012 14:51:42 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB59B1@mxb2.hg.genetics.utah.edu>
References: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>,
	<2337.131.215.15.234.1354825698.squirrel@webmail.caltech.edu>
	<F2774D6F47BB9D449EEA8B0BF6679D9C3CEB59B1@mxb2.hg.genetics.utah.edu>
Message-ID: <4347.131.215.15.234.1354834302.squirrel@webmail.caltech.edu>

Dear Daniel,

Once again thanks for extensive help. We get over estimation of number of
genes at the end of step 2. So was wondering if there is a way to pick
only the best annotated. That been said assembly, ESTs and proteins are
not good and I am currently in process of running cegma.

Also for step 2(ab-initio gene-prediction using SNAP and Augustus) is it
best to turn off  keep_preds to remove any possible false-positives. Also
should est2genome turned ON? Of course as pointed in previous email use
est,proteins apart from training data to generate better gene-model and
repeat masking as well to mask repeats for ab-initio predictors?
I believe while running gff3_merge it is best to use option -g to get only
the gene-predictions and filter evidence.

Thanks and regards,
Parul Kudtarkar

> Hi Parul,
> I dont' really have many suggestions for improving the gene models after
> the annotation is done. Annotation is very dependent on the data you have
> at hand (the assembly, ESTs and proteins). One thing you could do to get
> more annotations is to run something like iprscan on the ab-initio
> predictions that didn't overlap any evidence and look for predictions that
> contain a pfam domain. Then you can send those predictions back through
> maker and promote them to gene model status.
>
> Do you have the CEGMA results that Carson asked about? That really will
> tell you what kind of annotation results you can expect. If the assembly
> doesn't have an N50 greater than the expected median gene size, then you
> can't expect very good results from automated annotation.
>
> Thanks,
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 1:28 PM
> To: Daniel Ence
> Cc: maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
>
> Dear Daniel,
>
> Thanks for clearing doubts. For augustus I am using the closest
> species(lamprey) to species we are annotating. For SNAP the training
> set(hmm file) is generated using predictions made from evidence based
> gene-predictions(sorry the file name was mis-leading). I think STEP 3-6
> are not required(more or less repetitive without further improving
> genemodel). Post Step 1(generating training data for SNAP using evidence
> based prediction) and Step2(ab-initio gene-prediction using SNAP and
> augustus) do you have recommendations for further improving the gene
> model?
>
> Thanks and regards,
> Parul Kudtarkar
>
>> Hi Parul,
>>
>> In step one, if protein2genome isn't turned on, then the protein
>> alignments wont be used to generate gene models. Carson said before to
>> use
>> protein2genome to generate gene models for your trainings set, but you
>> should know that those data aren't being used right now.
>>
>> In step 2, you can include the est and protein evidence that you used in
>> step one, and the ab-initio predictors will takes those data as hints to
>> guide their predictions. Also, are you reannotating human here? I'm just
>> wondering why the snap file is called Pult, but the augustus species
>> model
>> is human. Also, I think you should include the same masking files from
>> step 1, otherwise the ab-initio predictors will be predicting on the
>> unmasked sequence which will give you many spurious predictions.
>>
>> In step 3, I'm not certain what you mean by boot-strapping. The control
>> file you sent for step 3 will just pass-through all of the data from
>> before.
>>
>> In step 4, I think what you'll get is pretty close to what you already
>> had
>> in step 3. The gene models from step 3 are already based on the est and
>> protein data from step 1, so without giving any different evidence or
>> ab-initio predictors, I think that you will just get the same gene
>> models
>> that you got from step 3. Those gene models are what you should be using
>> to train snap. Also, is this the same genome as in the other steps? The
>> genome file here is called genome.linear.fa, but before it was called
>> genome.fa.
>>
>> Step 5. So maker uses both evidence and ab-initio predictions to create
>> models. If you don't give any evidence (EST or protein) maker will not
>> annotate any gene models. You have also changed the augustus species
>> model
>> in this step, but I don't know what you've gained by going from one
>> species to another. You should be training augustus with the gene models
>> and then creating a new species model in augustus. As I understand it,
>> the
>> filter only operates on gene models, not ab-initio predictions or
>> alignments, so it probably isn't doing anything the way you have it set.
>>
>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>> mean by boot-strapping here too.
>>
>> Hopefully that clears up some of the confusion with how maker works.
>> Carson will probably have a lot of suggestions too.
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: Parul Kudtarkar [parulk at caltech.edu]
>> Sent: Thursday, December 06, 2012 10:08 AM
>> To: carsonhh at gmail.com
>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>> Subject: Re: [maker-devel] AED score
>>
>> Hi Carson,
>>
>> Once again thanks for a quick response. We expect to get 25,000 to
>> 30,000
>> genes.
>> Here are the step
>> Step1. EST and proteins are used to predict gene-models. the resulting
>> file is used as training data-set for SNAP in step2. est2genome is
>> turned
>> ON
>> Step2. Augustus and SNAP is used to predict genes.
>> Step3. The results are re-annoated(boot-strap)
>> Step4. EST and proteins are used to predict gene-models. The gff file
>> from
>> step3. is used as model_gff. The resulting file is used as training
>> data-set for SNAP in step2
>> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>> contig_size to 10kb
>>
>> Thanks and regards,
>> Parul Kudtarkar
>>
>> I have attached the configuration file for each step.
>>> Your output has no genes.  They've all been filtered out.  The gene
>> predictions are left for reference purposes, but there are no gene
>> models
>>> in the file.  You need to look at the type columns in the GFF3 file -->
>> match/match_part features are evidence and reference data but not
>> models.
>>> All models will have types gene/mRNA/exon/CDS.  For example if you just
>> want gene models in your file you can use the gff3_merge script with the
>> -g option, and it will only print out the gene models.
>>> I think you may be misinterpreting what is happening at different
>>> steps,
>> as well as how to read the result files.  Could you give me a detailed
>> explanation of what you expect to get back together with your control
>> files and I can walk you through the configuration, and indicate what to
>> expect.  Also what was the report like from CEGMA. Could you include the
>> report file that shows how complete your genome is and how fragmented it
>> is?
>>> Thanks,
>>> Carson
>>> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>Dear Carson,
>>>>Thanks for a quick response. keep_preds is set to 0
>>>>Though for previous step(ab-intio gene predictions keep_preds was set
>>>> to
>> 1, see Scaffold1_input.gff). I have also attached the output file
>> Scaffold1_out.gff.
>>>>Please advice.
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>> You should always get all predictions, but should only get models
>> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>> keep_preds set.
>>>>> Do you have keeps_preds set or gene models with AED values above your
>> threshold (not match/match_part features)?  If the first one is the
>>>>>case,
>>>>> just set it to 0.  If the second one in the case, could you send me
>> example GFF3?
>>>>> Thanks,
>>>>> Carson
>>>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>Dear Carson,
>>>>>>Thanks once again, we have limited experimental data with very short
>>>>>> ESTs.
>>>>>>CEGMA is useful for us to gauge our gene-model.
>>>>>>On a different note to re-annotate genome(post evidence based
>>>>>>prediction(used as training dataset)and abinitio gene-prediction).
>> Here
>>>>>>are the control parameters I am using with AED score set to 0.5,
>>>>>> however
>>>>>> I
>>>>>>get predictions that includes the ones with AED score of 1.00 in
>>>>>> resulting
>>>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>> initial
>>>>>>gff3 file.
>>>>>>#-----Genome (Required for De-Novo Annotation)
>>>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>> eukaryotic
>>>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0
>>>>>> =
>> no
>>>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>> no
>>>>>>#-----MAKER Behavior Options
>>>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
>> 0
>>>>>>and 1)
>>>>>>Thanks and regards,
>>>>>>Parul Kudtarkar
>>>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>partial
>>>>>>>at
>>>>>>> best.  You should seriously consider using mRNAseq to capture those
>> by
>>>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>>>trinity.
>>>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
>> size,
>>>>>>>just
>>>>>>> have maker skip them by setting the min_contig filter in the
>> maker_opts.ctl file.
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
>> N50
>>>>>>>> of
>>>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>>> when
>>>>>>>>filtering based on AED score 0.75 there are no gene models
>>>>>>>> predicted
>> despite the model_gff file has few genes with scores less than 0.75?
>> Thanks and regards,
>>>>>>>>Parul Kudtarkar
>>>>>>>>> There are certain characteristics that are apparent in this
>> contig.
>>>>>>>>First
>>>>>>>>> it seems to be repeat rich with a very low gene density.  You
>>>>>>>>> also
>>>>>>>>>have
>>>>>>>>very short ESTs, and because of the lengths you are probably
>>>>>>>> getting
>> many
>>>>>>>>> of them to align spuriously which produces very short gene models
>> that
>>>>>>>>are
>>>>>>>>> more than likely false positives or at the very least just a
>>>>>>>>> piece
>>>>>>>>>of
>>>>>>>>>a
>>>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>> unless
>>>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>> protein
>>>>>>>>alignments also seem to be few and far between.  You probably need
>> to
>>>>>>>>add
>>>>>>>>> more proteins from a couple of related species, and you might
>> consider
>>>>>>>>using protein2genome rather than est2genome as a predictor if you
>> are
>>>>>>>>still working to generate a training set. Also est2genome produced
>> models
>>>>>>>>> almost always have an AED score near 0 so mixing est2genome with
>> the
>>>>>>>>AED_threshold with such limited protein support does create an
>> artificial
>>>>>>>>> bias to get back very short and incomplete models.
>>>>>>>>> How many contigs do you have in total and what is the N50 value
>> for
>>>>>>>>>the
>>>>>>>>assembly? If you have a large number of very short contigs, you
>>>>>>>> will
>>>>>>>> get
>>>>>>>>very inflated gene counts because you get genes split across
>>>>>>>> contigs
>>>>>>>> and
>>>>>>>>many contigs tend t be subtle rearrangements of other contigs just
>> assembled in a slightly different way (so you can get bits and
>> pieces
>>>>>>>> of
>>>>>>>>the same genes just rearranged).  This scenario is another
>>>>>>>> confounding
>>>>>>>>factor if using the est2genome predictor with short ESTs.  I would
>> recommend running CEGMA to get an estimate for the genome
>>>>>>>> completeness
>>>>>>>>as
>>>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>>>produced
>>>>>>>>> is a percent of genes that are found complete (end to end) vs
>> those
>>>>>>>>> that
>>>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
>> shorter
>>>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
>> gives
>>>>>>>>> a
>>>>>>>>high partial percentage and a low complete percentage, then this
>>>>>>>> pattern
>>>>>>>>can be expected to be even more exaggerated for other genes in the
>> genome.
>>>>>>>>> If your genome is highly fragmented or proteins do not align well
>> then
>>>>>>>>there are other strategies.  For example, some vertebrate genomes
>> end
>>>>>>>> up
>>>>>>>>having extremely fragmented assemblies (on the order of 100,000
>> contigs),
>>>>>>>>> and if they are distantly related to other annotated species few
>>>>>>>>proteins
>>>>>>>>> may align to the contigs because the introns in the alignments
>> tend
>>>>>>>>> to
>>>>>>>>be
>>>>>>>>> so long and exons so short that it pushes down the significance
>> scores
>>>>>>>>too
>>>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
>> only
>>>>>>>>> way
>>>>>>>>to get enough evidence to stitch gene models together.
>>>>>>>>> Thanks,
>>>>>>>>> Carson
>>>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>>>Dear Carson and Daniel,
>>>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
>> The
>>>>>>>>input gff3 file was provided to option model_pred(see attached file
>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>> least
>>>>>>>>>> 5
>>>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>>>> predicted
>>>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>>>attached
>>>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>Thanks and regards,
>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>>just
>>>>>>>>>>>want
>>>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>>>maker.
>>>>>>>>>>>On
>>>>>>>>>>> the other hand, if you are trying to build a dataset for
>> training
>>>>>>>>>>> gene
>>>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>>>> dataset
>>>>>>>>>>>for
>>>>>>>>>>> SNAP training.  There are a number of filters available. Just
>> call
>>>>>>>>>>> the
>>>>>>>>script once without parameters to see the options.
>>>>>>>>>>> Thanks,
>>>>>>>>>>> Carson
>>>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>>wrote:
>>>>>>>>>>>>Hi Parul,
>>>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
>> how
>>>>>>>>you
>>>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>>>Daniel
>>>>>>>>>>>>Daniel Ence
>>>>>>>>>>>>Graduate Student
>>>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>>>University of Utah
>>>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>>>________________________________________
>>>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>> Kudtarkar
>>>>>>>>[parulk at caltech.edu]
>>>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>>>Also, are there any other parameters that are required when
>> filtering
>>>>>>>>based on AED score?
>>>>>>>>>>>>> Hello Carson,
>>>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
>> models
>>>>>>>>>>>>>at
>>>>>>>>specific AED score.
>>>>>>>>>>>>> Alternatively if I were to do this within maker with regards
>> to
>>>>>>>>>>>>>parameters
>>>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>>genes
>>>>>>>>>>>>>gff3
>>>>>>>>>>>>> file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>> threshold?
>>>>>>>>Thanks and regards,
>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
>> 1
>>>>>>>>>>>>>> is
>>>>>>>>worst
>>>>>>>>>>>>>> as
>>>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
>> parameter
>>>>>>>>to
>>>>>>>>>>>>>> require better matching to the evidence by setting it closer
>> to
>>>>>>>>>>>>>>0.
>>>>>>>>>>>>>>You
>>>>>>>>>>>>>> can
>>>>>>>>>>>>>> also try to increase protein homology evidence as some of
>> your
>>>>>>>>calls
>>>>>>>>>>>>>>may
>>>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>>>> --Carson
>>>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>>> based
>>>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
>> predictions, followed by boot-strapping. I would typically expect
>> 20-30K
>>>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>>> indicating
>>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>>>predication/script to retain predictions with AED score 1 and if
>>>>>>>> yes
>>>>>>>>>>>>>>>how
>>>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>>>--
>>>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>> -l
>>>>>>>>>>>>>>>ab
>>>>>>>>>>>>>>>.o
>>>>>>>>rg
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>--
>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>> b.
>>>>>>>>>>>>or
>>>>>>>>>>>>g
>>>>>>>>_______________________________________________
>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>> b.
>>>>>>>>>>>>or
>>>>>>>>>>>>g
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>> .o
>>>>>>>>>>>rg
>>>>>>>>>>--
>>>>>>>>>>Scientific Programmer
>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>Beckman Institute,
>>>>>>>>>>California Institute of Technology
>>>>>>>>>>http://www.spbase.org
>>>>>>>>--
>>>>>>>>Scientific Programmer
>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>Beckman Institute,
>>>>>>>>California Institute of Technology
>>>>>>>>http://www.spbase.org
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>>
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
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--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From parulk at caltech.edu  Thu Dec  6 10:08:23 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Thu, 6 Dec 2012 09:08:23 -0800 (PST)
Subject: [maker-devel] AED score
Message-ID: <64289.108.85.195.190.1354813703.squirrel@webmail.caltech.edu>

Hi Carson,

Once again thanks for a quick response. We expect to get 25,000 to 30,000
genes.
Here are the step
Step1. EST and proteins are used to predict gene-models. the resulting
file is used as training data-set for SNAP in step2. est2genome is turned
ON
Step2. Augustus and SNAP is used to predict genes.
Step3. The results are re-annoated(boot-strap)
Step4. EST and proteins are used to predict gene-models. The gff file from
step3. is used as model_gff. The resulting file is used as training
data-set for SNAP in step2
Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
contig_size to 10kb

Thanks and regards,
Parul Kudtarkar

I have attached the configuration file for each step.
> Your output has no genes.  They've all been filtered out.  The gene
predictions are left for reference purposes, but there are no gene models
> in the file.  You need to look at the type columns in the GFF3 file -->
match/match_part features are evidence and reference data but not
models.
> All models will have types gene/mRNA/exon/CDS.  For example if you just
want gene models in your file you can use the gff3_merge script with the
-g option, and it will only print out the gene models.
> I think you may be misinterpreting what is happening at different steps,
as well as how to read the result files.  Could you give me a detailed
explanation of what you expect to get back together with your control
files and I can walk you through the configuration, and indicate what to
expect.  Also what was the report like from CEGMA. Could you include the
report file that shows how complete your genome is and how fragmented it
is?
> Thanks,
> Carson
> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>Dear Carson,
>>Thanks for a quick response. keep_preds is set to 0
>>Though for previous step(ab-intio gene predictions keep_preds was set to
1, see Scaffold1_input.gff). I have also attached the output file
Scaffold1_out.gff.
>>Please advice.
>>Thanks and regards,
>>Parul Kudtarkar
>>> You should always get all predictions, but should only get models
(match/match_part) with AED scores less than 0.5.  You should never get
>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
keep_preds set.
>>> Do you have keeps_preds set or gene models with AED values above your
threshold (not match/match_part features)?  If the first one is the
>>>case,
>>> just set it to 0.  If the second one in the case, could you send me
example GFF3?
>>> Thanks,
>>> Carson
>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>Dear Carson,
>>>>Thanks once again, we have limited experimental data with very short
>>>> ESTs.
>>>>CEGMA is useful for us to gauge our gene-model.
>>>>On a different note to re-annotate genome(post evidence based
>>>>prediction(used as training dataset)and abinitio gene-prediction).
Here
>>>>are the control parameters I am using with AED score set to 0.5,
>>>> however
>>>> I
>>>>get predictions that includes the ones with AED score of 1.00 in
>>>> resulting
>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>> initial
>>>>gff3 file.
>>>>#-----Genome (Required for De-Novo Annotation)
>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>> eukaryotic
>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
no
>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>> no
>>>>#-----MAKER Behavior Options
>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
0
>>>>and 1)
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>partial
>>>>>at
>>>>> best.  You should seriously consider using mRNAseq to capture those
by
>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>trinity.
>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
size,
>>>>>just
>>>>> have maker skip them by setting the min_contig filter in the
maker_opts.ctl file.
>>>>> Thanks,
>>>>> Carson
>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
N50
>>>>>> of
>>>>>>39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>> when
>>>>>>filtering based on AED score 0.75 there are no gene models predicted
despite the model_gff file has few genes with scores less than 0.75?
Thanks and regards,
>>>>>>Parul Kudtarkar
>>>>>>> There are certain characteristics that are apparent in this
contig.
>>>>>>First
>>>>>>> it seems to be repeat rich with a very low gene density.  You also
>>>>>>>have
>>>>>>very short ESTs, and because of the lengths you are probably getting
many
>>>>>>> of them to align spuriously which produces very short gene models
that
>>>>>>are
>>>>>>> more than likely false positives or at the very least just a piece
>>>>>>>of
>>>>>>>a
>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>> unless
>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>> protein
>>>>>>alignments also seem to be few and far between.  You probably need
to
>>>>>>add
>>>>>>> more proteins from a couple of related species, and you might
consider
>>>>>>using protein2genome rather than est2genome as a predictor if you
are
>>>>>>still working to generate a training set. Also est2genome produced
models
>>>>>>> almost always have an AED score near 0 so mixing est2genome with
the
>>>>>>AED_threshold with such limited protein support does create an
artificial
>>>>>>> bias to get back very short and incomplete models.
>>>>>>> How many contigs do you have in total and what is the N50 value
for
>>>>>>>the
>>>>>>assembly? If you have a large number of very short contigs, you will
>>>>>> get
>>>>>>very inflated gene counts because you get genes split across contigs
>>>>>> and
>>>>>>many contigs tend t be subtle rearrangements of other contigs just
assembled in a slightly different way (so you can get bits and
pieces
>>>>>> of
>>>>>>the same genes just rearranged).  This scenario is another
>>>>>> confounding
>>>>>>factor if using the est2genome predictor with short ESTs.  I would
recommend running CEGMA to get an estimate for the genome
>>>>>> completeness
>>>>>>as
>>>>>>> well as get an estimate of fragmentation as one of the statistics
>>>>>>produced
>>>>>>> is a percent of genes that are found complete (end to end) vs
those
>>>>>>> that
>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
shorter
>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
gives
>>>>>>> a
>>>>>>high partial percentage and a low complete percentage, then this
>>>>>> pattern
>>>>>>can be expected to be even more exaggerated for other genes in the
genome.
>>>>>>> If your genome is highly fragmented or proteins do not align well
then
>>>>>>there are other strategies.  For example, some vertebrate genomes
end
>>>>>> up
>>>>>>having extremely fragmented assemblies (on the order of 100,000
contigs),
>>>>>>> and if they are distantly related to other annotated species few
>>>>>>proteins
>>>>>>> may align to the contigs because the introns in the alignments
tend
>>>>>>> to
>>>>>>be
>>>>>>> so long and exons so short that it pushes down the significance
scores
>>>>>>too
>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
only
>>>>>>> way
>>>>>>to get enough evidence to stitch gene models together.
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>Dear Carson and Daniel,
>>>>>>>>Thanks. I ran sample file for filtering genes based on AED score.
The
>>>>>>input gff3 file was provided to option model_pred(see attached file
Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>> least
>>>>>>>> 5
>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>> predicted
>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>attached
>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>Thanks and regards,
>>>>>>>>Parul Kudtarkar
>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>just
>>>>>>>>>want
>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>maker.
>>>>>>>>>On
>>>>>>>>> the other hand, if you are trying to build a dataset for
training
>>>>>>>>> gene
>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>> dataset
>>>>>>>>>for
>>>>>>>>> SNAP training.  There are a number of filters available. Just
call
>>>>>>>>> the
>>>>>>script once without parameters to see the options.
>>>>>>>>> Thanks,
>>>>>>>>> Carson
>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>wrote:
>>>>>>>>>>Hi Parul,
>>>>>>>>>>I think the way you described (with the maker_opts.ctl file) is
how
>>>>>>you
>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>Daniel
>>>>>>>>>>Daniel Ence
>>>>>>>>>>Graduate Student
>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>University of Utah
>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>________________________________________
>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>> Kudtarkar
>>>>>>[parulk at caltech.edu]
>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>Also, are there any other parameters that are required when
filtering
>>>>>>based on AED score?
>>>>>>>>>>> Hello Carson,
>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
models
>>>>>>>>>>>at
>>>>>>specific AED score.
>>>>>>>>>>> Alternatively if I were to do this within maker with regards
to
>>>>>>>>>>>parameters
>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>genes
>>>>>>>>>>>gff3
>>>>>>>>>>> file to model_gff and  set AED_threshold at desired threshold?
>>>>>>Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best and
1
>>>>>>>>>>>> is
>>>>>>worst
>>>>>>>>>>>> as
>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
parameter
>>>>>>to
>>>>>>>>>>>> require better matching to the evidence by setting it closer
to
>>>>>>>>>>>>0.
>>>>>>>>>>>>You
>>>>>>>>>>>> can
>>>>>>>>>>>> also try to increase protein homology evidence as some of
your
>>>>>>calls
>>>>>>>>>>>>may
>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>> --Carson
>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>> based
>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
predictions, followed by boot-strapping. I would typically expect
20-30K
>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>> indicating
>>>>>>>>>>>>> too
>>>>>>>>>>>>>many false positives. Is there a way to further refine these
>>>>>>predication/script to retain predictions with AED score 1 and if yes
>>>>>>>>>>>>>how
>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>--
>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
-l
>>>>>>>>>>>>>ab
>>>>>>>>>>>>>.o
>>>>>>rg
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>--
>>>>>>>>>>Scientific Programmer
>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>Beckman Institute,
>>>>>>>>>>California Institute of Technology
>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
b.
>>>>>>>>>>or
>>>>>>>>>>g
>>>>>>_______________________________________________
>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
b.
>>>>>>>>>>or
>>>>>>>>>>g
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
.o
>>>>>>>>>rg
>>>>>>>>--
>>>>>>>>Scientific Programmer
>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>Beckman Institute,
>>>>>>>>California Institute of Technology
>>>>>>>>http://www.spbase.org
>>>>>>--
>>>>>>Scientific Programmer
>>>>>>Center for Computational Regulatory Genomics
>>>>>>Beckman Institute,
>>>>>>California Institute of Technology
>>>>>>http://www.spbase.org
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org

--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org


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From carsonhh at gmail.com  Fri Dec  7 08:22:10 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 07 Dec 2012 10:22:10 -0500
Subject: [maker-devel] AED score
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C3CEB5981@mxb2.hg.genetics.utah.edu>
Message-ID: <CCE76039.16D5C%carsonhh@gmail.com>

Just to add to Daniels comments.

Things to change in step 1:
> protein= <just try and add more protein evidence in general>
> est2genome=0
> protein2genome=1
> split_hit=20000
> min_contig=50000

Reasoning:
> Your ESTs are very short especially if this is a lamprey species which have
> very long introns and really short exons.  In lamprey (i.e. Petromyzon
> marinus), genes tend to be very long (remember gene lengths include introns
> and UTR and is not just the size of the coding sequence), so contigs shorter
> than 50kb are useless for training as you are unlikely to get nice complete
> gene models on those.  Also lampreys have very long introns, so you have to
> allow for bigger introns in alignments (split_hit parameter).  Finally add as
> much protein evidence from as many sources as possible.  Your maker training
> run will take a long time as proteins take forever to align, but because of
> the evolutionary distance of lamprey from everything else and the short exon
> structure of its genome, very little aligns directly to its genome from other
> deuterstome and vertebrate species.  I'm assuming this is a lamprey species
> because of what you said about the  augustus species file you are using.
> Really the only thing closely related to lampreys unfortunately are other
> lampreys.  Lancelets, hagfish, and sharks are not closely related to lamprey
> (while they branch closely together on the tree of life, there are too many
> years since the last common ancestor).  So while they may have similar issues
> related to annotation (long introns and short exons etc.) they will not really
> match that well for the gene predictor or even protein alignments.

Additional note:
> I have training files for the lamprey species Petromyzon marinus for both
> Augustus and SNAP that I could share with you in a few week, when the genome
> publication is is released.  But before that happens, new gene models will be
> available  through the UCSC browser (hopefully within a couple of weeks), and
> gene models are already available through ENSEMBL.  Get those protein files
> for training, it may be a big help for you.  If you want early access to the
> lamprey training files for Augustus and SNAP, you would have to request it
> from Weiming Li at Michigan State University (the head of that genome
> project).
> 


Things to change in step 2:
> Optimally you would be doing de novo training using mRNAseq results, but with
> on;ly sparse protein alignments and such a fragmented assembly, you are
> probably better off just trying to adapt the human HMM files.  They won't
> match that well, but you probably won't have the evidence for De Novo
> training.  First make a copy of the augustus human species directory and
> rename it to lamprey (cp -R  ?/augustus/config/species/human
> ?/augustus/config/species/lamprey).  Use it as the base species for retraining
> augustus using your new models.  You will have to edit multiple files in the
> directory after you copy it so that they no longer say human or homo sapiens
> internally or in the file name.  Use maker2zff to generate the filtered ZFF
> file for training SNAP, but don't train SNAP.  Rather use the training file to
> better train Augustus info here (just ignore the CEGMA part) -->
> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
> 
> MAKE a backup of the step 1 maker output directory and run step 2 in the old
> step 1 directory (this allows you to change the parameters and reuse files
> form step 1 so you don't have to recalculate all the protein and EST
> alignments).  So control files for step 2 are identical to step 1 except for
> these parameters.
> 
> protein2genome=0
> augustus_species=lamprey
> snaphmm=lamprey.hmm #optional if you decide to use SNAP
> 
> Don't both training SNAP here as you probably won't have enough data and you
> assembly is too fragmented for it to work well, so just stick to augustus.
> Try SNAP if you want just to see how well it works.  Manually open up the
> largest contigs in a viewer to look at the models produced from the MAKER run
> to see if they look reasonable (this will also help you decide whether to keep
> SNAP).
> 

Things to change in step 3:
> Step 3 should just be a clone of step 2 as it is bootstrapping.  But make
> copies of ?/augustus/config/species/lamprey and save it to
> ?/augustus/config/species/lamprey2 (editing all the files and names as you did
> in step 2). This way you don't loose that training data if you decide to step
> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
> 
> augustus_species=lamprey2
> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
> 
> Make a backup of Step 2 and run step 3 in the old Step 2 directory (This is
> for file reuse, so the step will run fast).  This must be the exact same step
> directory as step 2 for the reuse trick to work.
> 
> Manually review the models and if you are satisfied move to step 4.  Also note
> that most parameters including the protein, EST, and repeats should not change
> from step1-step3, and should not be removed for step 4 either, you can add
> more evidence, but don't remove evidence (like the repeats).
> 
> 
Things to change in step 4:
> For this step, just set min_contig=10000 and rerun MAKER inside the step 3
> directory to get the smaller contigs annotated.  This should be your final
> step, although you can try altering other parameters or adding more evidence
> sources here etc.
> 
> 
For other things to keep in mind, you should consider taking extra time to
build a comprehensive library of repeats for your species, I know that
Petromyzon marinus was virtually unannotatable until we had a very deep
repeat library built for it.  Any repeat library should be used in all
steps.  Also for lamprey, you will expect between 20,000-30,000 genes both
because of your assemblies fragmentation and because of some ancestral
genome duplication.  Also be aware that lampreys appear to undergo
programmed genome loss in somatic tissues, so any gene count you get is only
going to represent a maximum of 75-80% of all genes unless the assembly is
derived from germline tissue.

Thanks,
Carson


> 
On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:

> Hi Parul, 
> 
> In step one, if protein2genome isn't turned on, then the protein alignments
> wont be used to generate gene models. Carson said before to use protein2genome
> to generate gene models for your trainings set, but you should know that those
> data aren't being used right now.
> 
> In step 2, you can include the est and protein evidence that you used in step
> one, and the ab-initio predictors will takes those data as hints to guide
> their predictions. Also, are you reannotating human here? I'm just wondering
> why the snap file is called Pult, but the augustus species model is human.
> Also, I think you should include the same masking files from step 1, otherwise
> the ab-initio predictors will be predicting on the unmasked sequence which
> will give you many spurious predictions.
> 
> In step 3, I'm not certain what you mean by boot-strapping. The control file
> you sent for step 3 will just pass-through all of the data from before.
> 
> In step 4, I think what you'll get is pretty close to what you already had in
> step 3. The gene models from step 3 are already based on the est and protein
> data from step 1, so without giving any different evidence or ab-initio
> predictors, I think that you will just get the same gene models that you got
> from step 3. Those gene models are what you should be using to train snap.
> Also, is this the same genome as in the other steps? The genome file here is
> called genome.linear.fa, but before it was called genome.fa.
> 
> Step 5. So maker uses both evidence and ab-initio predictions to create
> models. If you don't give any evidence (EST or protein) maker will not
> annotate any gene models. You have also changed the augustus species model in
> this step, but I don't know what you've gained by going from one species to
> another. You should be training augustus with the gene models and then
> creating a new species model in augustus. As I understand it, the filter only
> operates on gene models, not ab-initio predictions or alignments, so it
> probably isn't doing anything the way you have it set.
> 
> Step 6. I think step 5 and 6 should be combined. I don't know what you mean by
> boot-strapping here too.
> 
> Hopefully that clears up some of the confusion with how maker works. Carson
> will probably have a lot of suggestions too.
> 
> Thanks,
> Daniel 
> 
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 10:08 AM
> To: carsonhh at gmail.com
> Cc: Daniel Ence; maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
> 
> Hi Carson,
> 
> Once again thanks for a quick response. We expect to get 25,000 to 30,000
> genes.
> Here are the step
> Step1. EST and proteins are used to predict gene-models. the resulting
> file is used as training data-set for SNAP in step2. est2genome is turned
> ON
> Step2. Augustus and SNAP is used to predict genes.
> Step3. The results are re-annoated(boot-strap)
> Step4. EST and proteins are used to predict gene-models. The gff file from
> step3. is used as model_gff. The resulting file is used as training
> data-set for SNAP in step2
> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
> contig_size to 10kb
> 
> Thanks and regards,
> Parul Kudtarkar
> 
> I have attached the configuration file for each step.
>>  Your output has no genes.  They've all been filtered out.  The gene
> predictions are left for reference purposes, but there are no gene models
>>  in the file.  You need to look at the type columns in the GFF3 file -->
> match/match_part features are evidence and reference data but not
> models.
>>  All models will have types gene/mRNA/exon/CDS.  For example if you just
> want gene models in your file you can use the gff3_merge script with the
> -g option, and it will only print out the gene models.
>>  I think you may be misinterpreting what is happening at different steps,
> as well as how to read the result files.  Could you give me a detailed
> explanation of what you expect to get back together with your control
> files and I can walk you through the configuration, and indicate what to
> expect.  Also what was the report like from CEGMA. Could you include the
> report file that shows how complete your genome is and how fragmented it
> is?
>>  Thanks,
>>  Carson
>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>> Dear Carson,
>>> Thanks for a quick response. keep_preds is set to 0
>>> Though for previous step(ab-intio gene predictions keep_preds was set to
> 1, see Scaffold1_input.gff). I have also attached the output file
> Scaffold1_out.gff.
>>> Please advice.
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>>  You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>>>>  Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the
>>>> case,
>>>>  just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>>>>  Thanks,
>>>>  Carson
>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>> Dear Carson,
>>>>> Thanks once again, we have limited experimental data with very short
>>>>>  ESTs.
>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>> On a different note to re-annotate genome(post evidence based
>>>>> prediction(used as training dataset)and abinitio gene-prediction).
> Here
>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>  however
>>>>>  I
>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>  resulting
>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>  initial
>>>>> gff3 file.
>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>  eukaryotic
>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
> no
>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>  no
>>>>> #-----MAKER Behavior Options
>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
> 0
>>>>> and 1)
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>> partial
>>>>>> at
>>>>>>  best.  You should seriously consider using mRNAseq to capture those
> by
>>>>>>  using maker's est_gff option to pass in results from cufflinks or
>>>>>> trinity.
>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
> size,
>>>>>> just
>>>>>>  have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>>>>>>  Thanks,
>>>>>>  Carson
>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Thanks for the guidance Carson, total contig size is 330,611 with
> N50
>>>>>>>  of
>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>>  when
>>>>>>> filtering based on AED score 0.75 there are no gene models predicted
> despite the model_gff file has few genes with scores less than 0.75?
> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>  There are certain characteristics that are apparent in this
> contig.
>>>>>>> First
>>>>>>>  it seems to be repeat rich with a very low gene density.  You also
>>>>>>> have
>>>>>>> very short ESTs, and because of the lengths you are probably getting
> many
>>>>>>>  of them to align spuriously which produces very short gene models
> that
>>>>>>> are
>>>>>>>  more than likely false positives or at the very least just a piece
>>>>>>> of
>>>>>>> a
>>>>>>> gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>  unless
>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>  protein
>>>>>>> alignments also seem to be few and far between.  You probably need
> to
>>>>>>> add
>>>>>>>  more proteins from a couple of related species, and you might
> consider
>>>>>>> using protein2genome rather than est2genome as a predictor if you
> are
>>>>>>> still working to generate a training set. Also est2genome produced
> models
>>>>>>>  almost always have an AED score near 0 so mixing est2genome with
> the
>>>>>>> AED_threshold with such limited protein support does create an
> artificial
>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>  How many contigs do you have in total and what is the N50 value
> for
>>>>>>> the
>>>>>>> assembly? If you have a large number of very short contigs, you will
>>>>>>>  get
>>>>>>> very inflated gene counts because you get genes split across contigs
>>>>>>>  and
>>>>>>> many contigs tend t be subtle rearrangements of other contigs just
> assembled in a slightly different way (so you can get bits and
> pieces
>>>>>>>  of
>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>  confounding
>>>>>>> factor if using the est2genome predictor with short ESTs.  I would
> recommend running CEGMA to get an estimate for the genome
>>>>>>>  completeness
>>>>>>> as
>>>>>>>  well as get an estimate of fragmentation as one of the statistics
>>>>>>> produced
>>>>>>>  is a percent of genes that are found complete (end to end) vs
> those
>>>>>>>  that
>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to be
> shorter
>>>>>>>  and less intron rich than other genes in the genome, so if CEGMA
> gives
>>>>>>>  a
>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>  pattern
>>>>>>> can be expected to be even more exaggerated for other genes in the
> genome.
>>>>>>>  If your genome is highly fragmented or proteins do not align well
> then
>>>>>>> there are other strategies.  For example, some vertebrate genomes
> end
>>>>>>>  up
>>>>>>> having extremely fragmented assemblies (on the order of 100,000
> contigs),
>>>>>>>  and if they are distantly related to other annotated species few
>>>>>>> proteins
>>>>>>>  may align to the contigs because the introns in the alignments
> tend
>>>>>>>  to
>>>>>>> be
>>>>>>>  so long and exons so short that it pushes down the significance
> scores
>>>>>>> too
>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
> only
>>>>>>>  way
>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Dear Carson and Daniel,
>>>>>>> Thanks. I ran sample file for filtering genes based on AED score.
> The
>>>>>>> input gff3 file was provided to option model_pred(see attached file
> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>  least
>>>>>>>  5
>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>  predicted
>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>> attached
>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>> just
>>>>>>> want
>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>> maker.
>>>>>>> On
>>>>>>>  the other hand, if you are trying to build a dataset for
> training
>>>>>>>  gene
>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>  dataset
>>>>>>> for
>>>>>>>  SNAP training.  There are a number of filters available. Just
> call
>>>>>>>  the
>>>>>>> script once without parameters to see the options.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>> wrote:
>>>>>>> Hi Parul,
>>>>>>> I think the way you described (with the maker_opts.ctl file) is
> how
>>>>>>> you
>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>> Daniel
>>>>>>> Daniel Ence
>>>>>>> Graduate Student
>>>>>>> Eccles Institute of Human Genetics
>>>>>>> University of Utah
>>>>>>> 15 North 2030 East, Room 2100
>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>> ________________________________________
>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>  Kudtarkar
>>>>>>> [parulk at caltech.edu]
>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>> To: Parul Kudtarkar
>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>> Also, are there any other parameters that are required when
> filtering
>>>>>>> based on AED score?
>>>>>>>  Hello Carson,
>>>>>>>  Just to confirm, Is there a script that would filter gene
> models
>>>>>>> at
>>>>>>> specific AED score.
>>>>>>>  Alternatively if I were to do this within maker with regards
> to
>>>>>>> parameters
>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>> genes
>>>>>>> gff3
>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>> Thanks and regards,
>>>>>>>  Parul Kudtarkar
>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
> 1
>>>>>>>  is
>>>>>>> worst
>>>>>>>  as
>>>>>>>  it is a distance metric.  You can use the AED_threshold
> parameter
>>>>>>> to
>>>>>>>  require better matching to the evidence by setting it closer
> to
>>>>>>> 0.
>>>>>>> You
>>>>>>>  can
>>>>>>>  also try to increase protein homology evidence as some of
> your
>>>>>>> calls
>>>>>>> may
>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>  --Carson
>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>> wrote:
>>>>>>> Dear Maker community,
>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>  based
>>>>>>> prediction, I use this data-set to train SNAP as well as Augustus
> predictions, followed by boot-strapping. I would typically expect
> 20-30K
>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>  indicating
>>>>>>>  too
>>>>>>> many false positives. Is there a way to further refine these
>>>>>>> predication/script to retain predictions with AED score 1 and if yes
>>>>>>> how
>>>>>>> to go about this?
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
> -l
>>>>>>> ab
>>>>>>> .o
>>>>>>> rg
>>>>>>>  --
>>>>>>>  Scientific Programmer
>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>  Beckman Institute,
>>>>>>>  California Institute of Technology
>>>>>>>  http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>> or
>>>>>>> g
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>> or
>>>>>>> g
>>>>>>>  _______________________________________________
>>>>>>>  maker-devel mailing list
>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
> .o
>>>>>>> rg
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
> 
> 
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
> 
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
> 
> 
> 


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From carsonhh at gmail.com  Fri Dec  7 08:27:22 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 07 Dec 2012 10:27:22 -0500
Subject: [maker-devel] AED score
In-Reply-To: <4347.131.215.15.234.1354834302.squirrel@webmail.caltech.edu>
Message-ID: <CCE77471.16E05%carsonhh@gmail.com>

Don't use keep_preds on any of your steps.  That should really only be
used for Fungi, Oomycetes, or some insect species.  Other genomes with
long introns and short exons like tend to overcall so you will get way to
many false positives.  I gave a more detailed explanation of what I would
do in my other e-mail.

--Carson

On 12-12-06 5:51 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Daniel,
>
>Once again thanks for extensive help. We get over estimation of number of
>genes at the end of step 2. So was wondering if there is a way to pick
>only the best annotated. That been said assembly, ESTs and proteins are
>not good and I am currently in process of running cegma.
>
>Also for step 2(ab-initio gene-prediction using SNAP and Augustus) is it
>best to turn off  keep_preds to remove any possible false-positives. Also
>should est2genome turned ON? Of course as pointed in previous email use
>est,proteins apart from training data to generate better gene-model and
>repeat masking as well to mask repeats for ab-initio predictors?
>I believe while running gff3_merge it is best to use option -g to get only
>the gene-predictions and filter evidence.
>
>Thanks and regards,
>Parul Kudtarkar
>
>> Hi Parul,
>> I dont' really have many suggestions for improving the gene models after
>> the annotation is done. Annotation is very dependent on the data you
>>have
>> at hand (the assembly, ESTs and proteins). One thing you could do to get
>> more annotations is to run something like iprscan on the ab-initio
>> predictions that didn't overlap any evidence and look for predictions
>>that
>> contain a pfam domain. Then you can send those predictions back through
>> maker and promote them to gene model status.
>>
>> Do you have the CEGMA results that Carson asked about? That really will
>> tell you what kind of annotation results you can expect. If the assembly
>> doesn't have an N50 greater than the expected median gene size, then you
>> can't expect very good results from automated annotation.
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: Parul Kudtarkar [parulk at caltech.edu]
>> Sent: Thursday, December 06, 2012 1:28 PM
>> To: Daniel Ence
>> Cc: maker-devel at yandell-lab.org
>> Subject: Re: [maker-devel] AED score
>>
>> Dear Daniel,
>>
>> Thanks for clearing doubts. For augustus I am using the closest
>> species(lamprey) to species we are annotating. For SNAP the training
>> set(hmm file) is generated using predictions made from evidence based
>> gene-predictions(sorry the file name was mis-leading). I think STEP 3-6
>> are not required(more or less repetitive without further improving
>> genemodel). Post Step 1(generating training data for SNAP using evidence
>> based prediction) and Step2(ab-initio gene-prediction using SNAP and
>> augustus) do you have recommendations for further improving the gene
>> model?
>>
>> Thanks and regards,
>> Parul Kudtarkar
>>
>>> Hi Parul,
>>>
>>> In step one, if protein2genome isn't turned on, then the protein
>>> alignments wont be used to generate gene models. Carson said before to
>>> use
>>> protein2genome to generate gene models for your trainings set, but you
>>> should know that those data aren't being used right now.
>>>
>>> In step 2, you can include the est and protein evidence that you used
>>>in
>>> step one, and the ab-initio predictors will takes those data as hints
>>>to
>>> guide their predictions. Also, are you reannotating human here? I'm
>>>just
>>> wondering why the snap file is called Pult, but the augustus species
>>> model
>>> is human. Also, I think you should include the same masking files from
>>> step 1, otherwise the ab-initio predictors will be predicting on the
>>> unmasked sequence which will give you many spurious predictions.
>>>
>>> In step 3, I'm not certain what you mean by boot-strapping. The control
>>> file you sent for step 3 will just pass-through all of the data from
>>> before.
>>>
>>> In step 4, I think what you'll get is pretty close to what you already
>>> had
>>> in step 3. The gene models from step 3 are already based on the est and
>>> protein data from step 1, so without giving any different evidence or
>>> ab-initio predictors, I think that you will just get the same gene
>>> models
>>> that you got from step 3. Those gene models are what you should be
>>>using
>>> to train snap. Also, is this the same genome as in the other steps? The
>>> genome file here is called genome.linear.fa, but before it was called
>>> genome.fa.
>>>
>>> Step 5. So maker uses both evidence and ab-initio predictions to create
>>> models. If you don't give any evidence (EST or protein) maker will not
>>> annotate any gene models. You have also changed the augustus species
>>> model
>>> in this step, but I don't know what you've gained by going from one
>>> species to another. You should be training augustus with the gene
>>>models
>>> and then creating a new species model in augustus. As I understand it,
>>> the
>>> filter only operates on gene models, not ab-initio predictions or
>>> alignments, so it probably isn't doing anything the way you have it
>>>set.
>>>
>>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>>> mean by boot-strapping here too.
>>>
>>> Hopefully that clears up some of the confusion with how maker works.
>>> Carson will probably have a lot of suggestions too.
>>>
>>> Thanks,
>>> Daniel
>>>
>>> Daniel Ence
>>> Graduate Student
>>> Eccles Institute of Human Genetics
>>> University of Utah
>>> 15 North 2030 East, Room 2100
>>> Salt Lake City, UT 84112-5330
>>> ________________________________________
>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>> Sent: Thursday, December 06, 2012 10:08 AM
>>> To: carsonhh at gmail.com
>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>> Subject: Re: [maker-devel] AED score
>>>
>>> Hi Carson,
>>>
>>> Once again thanks for a quick response. We expect to get 25,000 to
>>> 30,000
>>> genes.
>>> Here are the step
>>> Step1. EST and proteins are used to predict gene-models. the resulting
>>> file is used as training data-set for SNAP in step2. est2genome is
>>> turned
>>> ON
>>> Step2. Augustus and SNAP is used to predict genes.
>>> Step3. The results are re-annoated(boot-strap)
>>> Step4. EST and proteins are used to predict gene-models. The gff file
>>> from
>>> step3. is used as model_gff. The resulting file is used as training
>>> data-set for SNAP in step2
>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>>> contig_size to 10kb
>>>
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>
>>> I have attached the configuration file for each step.
>>>> Your output has no genes.  They've all been filtered out.  The gene
>>> predictions are left for reference purposes, but there are no gene
>>> models
>>>> in the file.  You need to look at the type columns in the GFF3 file
>>>>-->
>>> match/match_part features are evidence and reference data but not
>>> models.
>>>> All models will have types gene/mRNA/exon/CDS.  For example if you
>>>>just
>>> want gene models in your file you can use the gff3_merge script with
>>>the
>>> -g option, and it will only print out the gene models.
>>>> I think you may be misinterpreting what is happening at different
>>>> steps,
>>> as well as how to read the result files.  Could you give me a detailed
>>> explanation of what you expect to get back together with your control
>>> files and I can walk you through the configuration, and indicate what
>>>to
>>> expect.  Also what was the report like from CEGMA. Could you include
>>>the
>>> report file that shows how complete your genome is and how fragmented
>>>it
>>> is?
>>>> Thanks,
>>>> Carson
>>>> On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>Dear Carson,
>>>>>Thanks for a quick response. keep_preds is set to 0
>>>>>Though for previous step(ab-intio gene predictions keep_preds was set
>>>>> to
>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>> Scaffold1_out.gff.
>>>>>Please advice.
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>> You should always get all predictions, but should only get models
>>> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>>> models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>> keep_preds set.
>>>>>> Do you have keeps_preds set or gene models with AED values above
>>>>>>your
>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>case,
>>>>>> just set it to 0.  If the second one in the case, could you send me
>>> example GFF3?
>>>>>> Thanks,
>>>>>> Carson
>>>>>> On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>Dear Carson,
>>>>>>>Thanks once again, we have limited experimental data with very short
>>>>>>> ESTs.
>>>>>>>CEGMA is useful for us to gauge our gene-model.
>>>>>>>On a different note to re-annotate genome(post evidence based
>>>>>>>prediction(used as training dataset)and abinitio gene-prediction).
>>> Here
>>>>>>>are the control parameters I am using with AED score set to 0.5,
>>>>>>> however
>>>>>>> I
>>>>>>>get predictions that includes the ones with AED score of 1.00 in
>>>>>>> resulting
>>>>>>>gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>> initial
>>>>>>>gff3 file.
>>>>>>>#-----Genome (Required for De-Novo Annotation)
>>>>>>>genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>> eukaryotic
>>>>>>>#-----Re-annotation Using MAKER Derived GFF3
>>>>>>>genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>>file
>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0
>>>>>>> =
>>> no
>>>>>>>protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 =
>>>>>>>no
>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>> no
>>>>>>>#-----MAKER Behavior Options
>>>>>>>AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound
>>>>>>>by
>>> 0
>>>>>>>and 1)
>>>>>>>Thanks and regards,
>>>>>>>Parul Kudtarkar
>>>>>>>> Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>>partial
>>>>>>>>at
>>>>>>>> best.  You should seriously consider using mRNAseq to capture
>>>>>>>>those
>>> by
>>>>>>>> using maker's est_gff option to pass in results from cufflinks or
>>>>>>>>trinity.
>>>>>>>>  Also I wouldn't even try to annotate contigs less than 10kb in
>>> size,
>>>>>>>>just
>>>>>>>> have maker skip them by setting the min_contig filter in the
>>> maker_opts.ctl file.
>>>>>>>> Thanks,
>>>>>>>> Carson
>>>>>>>> On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>>>Thanks for the guidance Carson, total contig size is 330,611 with
>>> N50
>>>>>>>>> of
>>>>>>>>>39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>reason
>>>>>>>>> when
>>>>>>>>>filtering based on AED score 0.75 there are no gene models
>>>>>>>>> predicted
>>> despite the model_gff file has few genes with scores less than 0.75?
>>> Thanks and regards,
>>>>>>>>>Parul Kudtarkar
>>>>>>>>>> There are certain characteristics that are apparent in this
>>> contig.
>>>>>>>>>First
>>>>>>>>>> it seems to be repeat rich with a very low gene density.  You
>>>>>>>>>> also
>>>>>>>>>>have
>>>>>>>>>very short ESTs, and because of the lengths you are probably
>>>>>>>>> getting
>>> many
>>>>>>>>>> of them to align spuriously which produces very short gene
>>>>>>>>>>models
>>> that
>>>>>>>>>are
>>>>>>>>>> more than likely false positives or at the very least just a
>>>>>>>>>> piece
>>>>>>>>>>of
>>>>>>>>>>a
>>>>>>>>>gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>>> unless
>>>>>>>>>you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>> protein
>>>>>>>>>alignments also seem to be few and far between.  You probably need
>>> to
>>>>>>>>>add
>>>>>>>>>> more proteins from a couple of related species, and you might
>>> consider
>>>>>>>>>using protein2genome rather than est2genome as a predictor if you
>>> are
>>>>>>>>>still working to generate a training set. Also est2genome produced
>>> models
>>>>>>>>>> almost always have an AED score near 0 so mixing est2genome with
>>> the
>>>>>>>>>AED_threshold with such limited protein support does create an
>>> artificial
>>>>>>>>>> bias to get back very short and incomplete models.
>>>>>>>>>> How many contigs do you have in total and what is the N50 value
>>> for
>>>>>>>>>>the
>>>>>>>>>assembly? If you have a large number of very short contigs, you
>>>>>>>>> will
>>>>>>>>> get
>>>>>>>>>very inflated gene counts because you get genes split across
>>>>>>>>> contigs
>>>>>>>>> and
>>>>>>>>>many contigs tend t be subtle rearrangements of other contigs just
>>> assembled in a slightly different way (so you can get bits and
>>> pieces
>>>>>>>>> of
>>>>>>>>>the same genes just rearranged).  This scenario is another
>>>>>>>>> confounding
>>>>>>>>>factor if using the est2genome predictor with short ESTs.  I would
>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>> completeness
>>>>>>>>>as
>>>>>>>>>> well as get an estimate of fragmentation as one of the
>>>>>>>>>>statistics
>>>>>>>>>produced
>>>>>>>>>> is a percent of genes that are found complete (end to end) vs
>>> those
>>>>>>>>>> that
>>>>>>>>>are partial.  CEGMA identifies house keeping genes that tend to be
>>> shorter
>>>>>>>>>> and less intron rich than other genes in the genome, so if CEGMA
>>> gives
>>>>>>>>>> a
>>>>>>>>>high partial percentage and a low complete percentage, then this
>>>>>>>>> pattern
>>>>>>>>>can be expected to be even more exaggerated for other genes in the
>>> genome.
>>>>>>>>>> If your genome is highly fragmented or proteins do not align
>>>>>>>>>>well
>>> then
>>>>>>>>>there are other strategies.  For example, some vertebrate genomes
>>> end
>>>>>>>>> up
>>>>>>>>>having extremely fragmented assemblies (on the order of 100,000
>>> contigs),
>>>>>>>>>> and if they are distantly related to other annotated species few
>>>>>>>>>proteins
>>>>>>>>>> may align to the contigs because the introns in the alignments
>>> tend
>>>>>>>>>> to
>>>>>>>>>be
>>>>>>>>>> so long and exons so short that it pushes down the significance
>>> scores
>>>>>>>>>too
>>>>>>>>>> much.  In those cases heavy mRNAseq seems to be the best if not
>>> only
>>>>>>>>>> way
>>>>>>>>>to get enough evidence to stitch gene models together.
>>>>>>>>>> Thanks,
>>>>>>>>>> Carson
>>>>>>>>>> On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>>>Dear Carson and Daniel,
>>>>>>>>>>>Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>score.
>>> The
>>>>>>>>>input gff3 file was provided to option model_pred(see attached
>>>>>>>>>file
>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>> least
>>>>>>>>>>> 5
>>>>>>>>>>>genes with AED score less than 0.75. However there were no genes
>>>>>>>>>>> predicted
>>>>>>>>>>>in the output file(see attached file Scaffold1_out). I have also
>>>>>>>>>attached
>>>>>>>>>>>the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>> Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>>>just
>>>>>>>>>>>>want
>>>>>>>>>>>> to restrict final gene models to close matches directly within
>>>>>>>>>>>>maker.
>>>>>>>>>>>>On
>>>>>>>>>>>> the other hand, if you are trying to build a dataset for
>>> training
>>>>>>>>>>>> gene
>>>>>>>>>predictors, use the maker2zff script for generating a filtered
>>>>>>>>> dataset
>>>>>>>>>>>>for
>>>>>>>>>>>> SNAP training.  There are a number of filters available. Just
>>> call
>>>>>>>>>>>> the
>>>>>>>>>script once without parameters to see the options.
>>>>>>>>>>>> Thanks,
>>>>>>>>>>>> Carson
>>>>>>>>>>>> On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>Hi Parul,
>>>>>>>>>>>>>I think the way you described (with the maker_opts.ctl file)
>>>>>>>>>>>>>is
>>> how
>>>>>>>>>you
>>>>>>>>>>>>>want to proceed. You still need to give the genome too.
>>>>>>>>>>>>>Daniel
>>>>>>>>>>>>>Daniel Ence
>>>>>>>>>>>>>Graduate Student
>>>>>>>>>>>>>Eccles Institute of Human Genetics
>>>>>>>>>>>>>University of Utah
>>>>>>>>>>>>>15 North 2030 East, Room 2100
>>>>>>>>>>>>>Salt Lake City, UT 84112-5330
>>>>>>>>>>>>>________________________________________
>>>>>>>>>>>>>From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>>>[maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>>> Kudtarkar
>>>>>>>>>[parulk at caltech.edu]
>>>>>>>>>>>>>Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>>>To: Parul Kudtarkar
>>>>>>>>>>>>>Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>>>Subject: Re: [maker-devel] AED score
>>>>>>>>>>>>>Also, are there any other parameters that are required when
>>> filtering
>>>>>>>>>based on AED score?
>>>>>>>>>>>>>> Hello Carson,
>>>>>>>>>>>>>> Just to confirm, Is there a script that would filter gene
>>> models
>>>>>>>>>>>>>>at
>>>>>>>>>specific AED score.
>>>>>>>>>>>>>> Alternatively if I were to do this within maker with regards
>>> to
>>>>>>>>>>>>>>parameters
>>>>>>>>>>>>>> in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>>>genes
>>>>>>>>>>>>>>gff3
>>>>>>>>>>>>>> file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>>> threshold?
>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>>> AED score with 1 are the ones you don't want.  0 is best
>>>>>>>>>>>>>>>and
>>> 1
>>>>>>>>>>>>>>> is
>>>>>>>>>worst
>>>>>>>>>>>>>>> as
>>>>>>>>>>>>>>> it is a distance metric.  You can use the AED_threshold
>>> parameter
>>>>>>>>>to
>>>>>>>>>>>>>>> require better matching to the evidence by setting it
>>>>>>>>>>>>>>>closer
>>> to
>>>>>>>>>>>>>>>0.
>>>>>>>>>>>>>>>You
>>>>>>>>>>>>>>> can
>>>>>>>>>>>>>>> also try to increase protein homology evidence as some of
>>> your
>>>>>>>>>calls
>>>>>>>>>>>>>>>may
>>>>>>>>>>>>>>> be split genes due to lack of evidence linking them.
>>>>>>>>>>>>>>> --Carson
>>>>>>>>>>>>>>> On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>>>wrote:
>>>>>>>>>>>>>>>>Dear Maker community,
>>>>>>>>>>>>>>>>For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>>>> based
>>>>>>>>>prediction, I use this data-set to train SNAP as well as Augustus
>>> predictions, followed by boot-strapping. I would typically expect
>>> 20-30K
>>>>>>>>>>>>>>>>genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>>>> indicating
>>>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>>>many false positives. Is there a way to further refine
>>>>>>>>>>>>>>>>these
>>>>>>>>>predication/script to retain predictions with AED score 1 and if
>>>>>>>>> yes
>>>>>>>>>>>>>>>>how
>>>>>>>>>>>>>>>>to go about this?
>>>>>>>>>>>>>>>>Thanks and regards,
>>>>>>>>>>>>>>>>Parul Kudtarkar
>>>>>>>>>>>>>>>>--
>>>>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yan
>>>>>>>>>>>>>>>>dell
>>> -l
>>>>>>>>>>>>>>>>ab
>>>>>>>>>>>>>>>>.o
>>>>>>>>>rg
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>>--
>>>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandel
>>>>>>>>>>>>>l-la
>>> b.
>>>>>>>>>>>>>or
>>>>>>>>>>>>>g
>>>>>>>>>_______________________________________________
>>>>>>>>>>>>>maker-devel mailing list
>>>>>>>>>>>>>maker-devel at box290.bluehost.com
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandel
>>>>>>>>>>>>>l-la
>>> b.
>>>>>>>>>>>>>or
>>>>>>>>>>>>>g
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-lab
>>> .o
>>>>>>>>>>>>rg
>>>>>>>>>>>--
>>>>>>>>>>>Scientific Programmer
>>>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>>>Beckman Institute,
>>>>>>>>>>>California Institute of Technology
>>>>>>>>>>>http://www.spbase.org
>>>>>>>>>--
>>>>>>>>>Scientific Programmer
>>>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>>>Beckman Institute,
>>>>>>>>>California Institute of Technology
>>>>>>>>>http://www.spbase.org
>>>>>>>--
>>>>>>>Scientific Programmer
>>>>>>>Center for Computational Regulatory Genomics
>>>>>>>Beckman Institute,
>>>>>>>California Institute of Technology
>>>>>>>http://www.spbase.org
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>>
>>>
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>>
>>
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>
>
>_______________________________________________
>maker-devel mailing list
>maker-devel at box290.bluehost.com
>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org





From carsonhh at gmail.com  Fri Dec  7 08:47:39 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 07 Dec 2012 10:47:39 -0500
Subject: [maker-devel] AED score
In-Reply-To: <CCE77415.16E00%carsonhh@gmail.com>
Message-ID: <CCE77941.16E3D%carsonhh@gmail.com>

For step 2 and 3, use lamprey rather than human in augustus.  For some
reason the current version of augustus doesn't diplay it as an option for
the species help menu (so I didn't see it), but it's there in
?/augustus/config/species/lamprey

For any additional training, make copies into
?/augustus/config/species/lamprey2 and ?/augustus/config/species/lamprey3

Thanks,
Carson



From:  Carson Holt <carsonhh at gmail.com>
Date:  Friday, 7 December, 2012 10:22 AM
To:  Daniel Ence <dence at genetics.utah.edu>, "maker-devel at yandell-lab.org"
<maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
Subject:  Re: [maker-devel] AED score

Just to add to Daniels comments.

Things to change in step 1:
> protein= <just try and add more protein evidence in general>
> est2genome=0
> protein2genome=1
> split_hit=20000
> min_contig=50000

Reasoning:
> Your ESTs are very short especially if this is a lamprey species which have
> very long introns and really short exons.  In lamprey (i.e. Petromyzon
> marinus), genes tend to be very long (remember gene lengths include introns
> and UTR and is not just the size of the coding sequence), so contigs shorter
> than 50kb are useless for training as you are unlikely to get nice complete
> gene models on those.  Also lampreys have very long introns, so you have to
> allow for bigger introns in alignments (split_hit parameter).  Finally add as
> much protein evidence from as many sources as possible.  Your maker training
> run will take a long time as proteins take forever to align, but because of
> the evolutionary distance of lamprey from everything else and the short exon
> structure of its genome, very little aligns directly to its genome from other
> deuterstome and vertebrate species.  I'm assuming this is a lamprey species
> because of what you said about the  augustus species file you are using.
> Really the only thing closely related to lampreys unfortunately are other
> lampreys.  Lancelets, hagfish, and sharks are not closely related to lamprey
> (while they branch closely together on the tree of life, there are too many
> years since the last common ancestor).  So while they may have similar issues
> related to annotation (long introns and short exons etc.) they will not really
> match that well for the gene predictor or even protein alignments.

Additional note:
> I have training files for the lamprey species Petromyzon marinus for both
> Augustus and SNAP that I could share with you in a few week, when the genome
> publication is is released.  But before that happens, new gene models will be
> available  through the UCSC browser (hopefully within a couple of weeks), and
> gene models are already available through ENSEMBL.  Get those protein files
> for training, it may be a big help for you.  If you want early access to the
> lamprey training files for Augustus and SNAP, you would have to request it
> from Weiming Li at Michigan State University (the head of that genome
> project).
> 


Things to change in step 2:
> Optimally you would be doing de novo training using mRNAseq results, but with
> on;ly sparse protein alignments and such a fragmented assembly, you are
> probably better off just trying to adapt the human HMM files.  They won't
> match that well, but you probably won't have the evidence for De Novo
> training.  First make a copy of the augustus human species directory and
> rename it to lamprey (cp -R  ?/augustus/config/species/human
> ?/augustus/config/species/lamprey).  Use it as the base species for retraining
> augustus using your new models.  You will have to edit multiple files in the
> directory after you copy it so that they no longer say human or homo sapiens
> internally or in the file name.  Use maker2zff to generate the filtered ZFF
> file for training SNAP, but don't train SNAP.  Rather use the training file to
> better train Augustus info here (just ignore the CEGMA part) -->
> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
> 
> MAKE a backup of the step 1 maker output directory and run step 2 in the old
> step 1 directory (this allows you to change the parameters and reuse files
> form step 1 so you don't have to recalculate all the protein and EST
> alignments).  So control files for step 2 are identical to step 1 except for
> these parameters.
> 
> protein2genome=0
> augustus_species=lamprey
> snaphmm=lamprey.hmm #optional if you decide to use SNAP
> 
> Don't both training SNAP here as you probably won't have enough data and you
> assembly is too fragmented for it to work well, so just stick to augustus.
> Try SNAP if you want just to see how well it works.  Manually open up the
> largest contigs in a viewer to look at the models produced from the MAKER run
> to see if they look reasonable (this will also help you decide whether to keep
> SNAP).
> 

Things to change in step 3:
> Step 3 should just be a clone of step 2 as it is bootstrapping.  But make
> copies of ?/augustus/config/species/lamprey and save it to
> ?/augustus/config/species/lamprey2 (editing all the files and names as you did
> in step 2). This way you don't loose that training data if you decide to step
> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
> 
> augustus_species=lamprey2
> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
> 
> Make a backup of Step 2 and run step 3 in the old Step 2 directory (This is
> for file reuse, so the step will run fast).  This must be the exact same step
> directory as step 2 for the reuse trick to work.
> 
> Manually review the models and if you are satisfied move to step 4.  Also note
> that most parameters including the protein, EST, and repeats should not change
> from step1-step3, and should not be removed for step 4 either, you can add
> more evidence, but don't remove evidence (like the repeats).
> 
> 
Things to change in step 4:
> For this step, just set min_contig=10000 and rerun MAKER inside the step 3
> directory to get the smaller contigs annotated.  This should be your final
> step, although you can try altering other parameters or adding more evidence
> sources here etc.
> 
> 
For other things to keep in mind, you should consider taking extra time to
build a comprehensive library of repeats for your species, I know that
Petromyzon marinus was virtually unannotatable until we had a very deep
repeat library built for it.  Any repeat library should be used in all
steps.  Also for lamprey, you will expect between 20,000-30,000 genes both
because of your assemblies fragmentation and because of some ancestral
genome duplication.  Also be aware that lampreys appear to undergo
programmed genome loss in somatic tissues, so any gene count you get is only
going to represent a maximum of 75-80% of all genes unless the assembly is
derived from germline tissue.

Thanks,
Carson


> 
On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:

> Hi Parul, 
> 
> In step one, if protein2genome isn't turned on, then the protein alignments
> wont be used to generate gene models. Carson said before to use protein2genome
> to generate gene models for your trainings set, but you should know that those
> data aren't being used right now.
> 
> In step 2, you can include the est and protein evidence that you used in step
> one, and the ab-initio predictors will takes those data as hints to guide
> their predictions. Also, are you reannotating human here? I'm just wondering
> why the snap file is called Pult, but the augustus species model is human.
> Also, I think you should include the same masking files from step 1, otherwise
> the ab-initio predictors will be predicting on the unmasked sequence which
> will give you many spurious predictions.
> 
> In step 3, I'm not certain what you mean by boot-strapping. The control file
> you sent for step 3 will just pass-through all of the data from before.
> 
> In step 4, I think what you'll get is pretty close to what you already had in
> step 3. The gene models from step 3 are already based on the est and protein
> data from step 1, so without giving any different evidence or ab-initio
> predictors, I think that you will just get the same gene models that you got
> from step 3. Those gene models are what you should be using to train snap.
> Also, is this the same genome as in the other steps? The genome file here is
> called genome.linear.fa, but before it was called genome.fa.
> 
> Step 5. So maker uses both evidence and ab-initio predictions to create
> models. If you don't give any evidence (EST or protein) maker will not
> annotate any gene models. You have also changed the augustus species model in
> this step, but I don't know what you've gained by going from one species to
> another. You should be training augustus with the gene models and then
> creating a new species model in augustus. As I understand it, the filter only
> operates on gene models, not ab-initio predictions or alignments, so it
> probably isn't doing anything the way you have it set.
> 
> Step 6. I think step 5 and 6 should be combined. I don't know what you mean by
> boot-strapping here too.
> 
> Hopefully that clears up some of the confusion with how maker works. Carson
> will probably have a lot of suggestions too.
> 
> Thanks,
> Daniel 
> 
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ________________________________________
> From: Parul Kudtarkar [parulk at caltech.edu]
> Sent: Thursday, December 06, 2012 10:08 AM
> To: carsonhh at gmail.com
> Cc: Daniel Ence; maker-devel at yandell-lab.org
> Subject: Re: [maker-devel] AED score
> 
> Hi Carson,
> 
> Once again thanks for a quick response. We expect to get 25,000 to 30,000
> genes.
> Here are the step
> Step1. EST and proteins are used to predict gene-models. the resulting
> file is used as training data-set for SNAP in step2. est2genome is turned
> ON
> Step2. Augustus and SNAP is used to predict genes.
> Step3. The results are re-annoated(boot-strap)
> Step4. EST and proteins are used to predict gene-models. The gff file from
> step3. is used as model_gff. The resulting file is used as training
> data-set for SNAP in step2
> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
> contig_size to 10kb
> 
> Thanks and regards,
> Parul Kudtarkar
> 
> I have attached the configuration file for each step.
>>  Your output has no genes.  They've all been filtered out.  The gene
> predictions are left for reference purposes, but there are no gene models
>>  in the file.  You need to look at the type columns in the GFF3 file -->
> match/match_part features are evidence and reference data but not
> models.
>>  All models will have types gene/mRNA/exon/CDS.  For example if you just
> want gene models in your file you can use the gff3_merge script with the
> -g option, and it will only print out the gene models.
>>  I think you may be misinterpreting what is happening at different steps,
> as well as how to read the result files.  Could you give me a detailed
> explanation of what you expect to get back together with your control
> files and I can walk you through the configuration, and indicate what to
> expect.  Also what was the report like from CEGMA. Could you include the
> report file that shows how complete your genome is and how fragmented it
> is?
>>  Thanks,
>>  Carson
>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>> Dear Carson,
>>> Thanks for a quick response. keep_preds is set to 0
>>> Though for previous step(ab-intio gene predictions keep_preds was set to
> 1, see Scaffold1_input.gff). I have also attached the output file
> Scaffold1_out.gff.
>>> Please advice.
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>>  You should always get all predictions, but should only get models
> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
> keep_preds set.
>>>>  Do you have keeps_preds set or gene models with AED values above your
> threshold (not match/match_part features)?  If the first one is the
>>>> case,
>>>>  just set it to 0.  If the second one in the case, could you send me
> example GFF3?
>>>>  Thanks,
>>>>  Carson
>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>> Dear Carson,
>>>>> Thanks once again, we have limited experimental data with very short
>>>>>  ESTs.
>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>> On a different note to re-annotate genome(post evidence based
>>>>> prediction(used as training dataset)and abinitio gene-prediction).
> Here
>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>  however
>>>>>  I
>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>  resulting
>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>  initial
>>>>> gff3 file.
>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>  eukaryotic
>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3 file
> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0 =
> no
>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 = no
> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>  no
>>>>> #-----MAKER Behavior Options
>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound by
> 0
>>>>> and 1)
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>> partial
>>>>>> at
>>>>>>  best.  You should seriously consider using mRNAseq to capture those
> by
>>>>>>  using maker's est_gff option to pass in results from cufflinks or
>>>>>> trinity.
>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
> size,
>>>>>> just
>>>>>>  have maker skip them by setting the min_contig filter in the
> maker_opts.ctl file.
>>>>>>  Thanks,
>>>>>>  Carson
>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Thanks for the guidance Carson, total contig size is 330,611 with
> N50
>>>>>>>  of
>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible reason
>>>>>>>  when
>>>>>>> filtering based on AED score 0.75 there are no gene models predicted
> despite the model_gff file has few genes with scores less than 0.75?
> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>  There are certain characteristics that are apparent in this
> contig.
>>>>>>> First
>>>>>>>  it seems to be repeat rich with a very low gene density.  You also
>>>>>>> have
>>>>>>> very short ESTs, and because of the lengths you are probably getting
> many
>>>>>>>  of them to align spuriously which produces very short gene models
> that
>>>>>>> are
>>>>>>>  more than likely false positives or at the very least just a piece
>>>>>>> of
>>>>>>> a
>>>>>>> gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>  unless
>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>  protein
>>>>>>> alignments also seem to be few and far between.  You probably need
> to
>>>>>>> add
>>>>>>>  more proteins from a couple of related species, and you might
> consider
>>>>>>> using protein2genome rather than est2genome as a predictor if you
> are
>>>>>>> still working to generate a training set. Also est2genome produced
> models
>>>>>>>  almost always have an AED score near 0 so mixing est2genome with
> the
>>>>>>> AED_threshold with such limited protein support does create an
> artificial
>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>  How many contigs do you have in total and what is the N50 value
> for
>>>>>>> the
>>>>>>> assembly? If you have a large number of very short contigs, you will
>>>>>>>  get
>>>>>>> very inflated gene counts because you get genes split across contigs
>>>>>>>  and
>>>>>>> many contigs tend t be subtle rearrangements of other contigs just
> assembled in a slightly different way (so you can get bits and
> pieces
>>>>>>>  of
>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>  confounding
>>>>>>> factor if using the est2genome predictor with short ESTs.  I would
> recommend running CEGMA to get an estimate for the genome
>>>>>>>  completeness
>>>>>>> as
>>>>>>>  well as get an estimate of fragmentation as one of the statistics
>>>>>>> produced
>>>>>>>  is a percent of genes that are found complete (end to end) vs
> those
>>>>>>>  that
>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to be
> shorter
>>>>>>>  and less intron rich than other genes in the genome, so if CEGMA
> gives
>>>>>>>  a
>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>  pattern
>>>>>>> can be expected to be even more exaggerated for other genes in the
> genome.
>>>>>>>  If your genome is highly fragmented or proteins do not align well
> then
>>>>>>> there are other strategies.  For example, some vertebrate genomes
> end
>>>>>>>  up
>>>>>>> having extremely fragmented assemblies (on the order of 100,000
> contigs),
>>>>>>>  and if they are distantly related to other annotated species few
>>>>>>> proteins
>>>>>>>  may align to the contigs because the introns in the alignments
> tend
>>>>>>>  to
>>>>>>> be
>>>>>>>  so long and exons so short that it pushes down the significance
> scores
>>>>>>> too
>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
> only
>>>>>>>  way
>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Dear Carson and Daniel,
>>>>>>> Thanks. I ran sample file for filtering genes based on AED score.
> The
>>>>>>> input gff3 file was provided to option model_pred(see attached file
> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>  least
>>>>>>>  5
>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>  predicted
>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>> attached
>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>> just
>>>>>>> want
>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>> maker.
>>>>>>> On
>>>>>>>  the other hand, if you are trying to build a dataset for
> training
>>>>>>>  gene
>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>  dataset
>>>>>>> for
>>>>>>>  SNAP training.  There are a number of filters available. Just
> call
>>>>>>>  the
>>>>>>> script once without parameters to see the options.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>> wrote:
>>>>>>> Hi Parul,
>>>>>>> I think the way you described (with the maker_opts.ctl file) is
> how
>>>>>>> you
>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>> Daniel
>>>>>>> Daniel Ence
>>>>>>> Graduate Student
>>>>>>> Eccles Institute of Human Genetics
>>>>>>> University of Utah
>>>>>>> 15 North 2030 East, Room 2100
>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>> ________________________________________
>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>  Kudtarkar
>>>>>>> [parulk at caltech.edu]
>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>> To: Parul Kudtarkar
>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>> Also, are there any other parameters that are required when
> filtering
>>>>>>> based on AED score?
>>>>>>>  Hello Carson,
>>>>>>>  Just to confirm, Is there a script that would filter gene
> models
>>>>>>> at
>>>>>>> specific AED score.
>>>>>>>  Alternatively if I were to do this within maker with regards
> to
>>>>>>> parameters
>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>> genes
>>>>>>> gff3
>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>> Thanks and regards,
>>>>>>>  Parul Kudtarkar
>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
> 1
>>>>>>>  is
>>>>>>> worst
>>>>>>>  as
>>>>>>>  it is a distance metric.  You can use the AED_threshold
> parameter
>>>>>>> to
>>>>>>>  require better matching to the evidence by setting it closer
> to
>>>>>>> 0.
>>>>>>> You
>>>>>>>  can
>>>>>>>  also try to increase protein homology evidence as some of
> your
>>>>>>> calls
>>>>>>> may
>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>  --Carson
>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>> wrote:
>>>>>>> Dear Maker community,
>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>  based
>>>>>>> prediction, I use this data-set to train SNAP as well as Augustus
> predictions, followed by boot-strapping. I would typically expect
> 20-30K
>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>  indicating
>>>>>>>  too
>>>>>>> many false positives. Is there a way to further refine these
>>>>>>> predication/script to retain predictions with AED score 1 and if yes
>>>>>>> how
>>>>>>> to go about this?
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
> -l
>>>>>>> ab
>>>>>>> .o
>>>>>>> rg
>>>>>>>  --
>>>>>>>  Scientific Programmer
>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>  Beckman Institute,
>>>>>>>  California Institute of Technology
>>>>>>>  http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>> or
>>>>>>> g
>>>>>>> _______________________________________________
>>>>>>> maker-devel mailing list
>>>>>>> maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
> b.
>>>>>>> or
>>>>>>> g
>>>>>>>  _______________________________________________
>>>>>>>  maker-devel mailing list
>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
> .o
>>>>>>> rg
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
> 
> 
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
> 
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
> 
> 
> 


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From parulk at caltech.edu  Fri Dec  7 15:06:26 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Fri, 7 Dec 2012 14:06:26 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCE77941.16E3D%carsonhh@gmail.com>
References: <CCE77941.16E3D%carsonhh@gmail.com>
Message-ID: <2974.131.215.15.234.1354917986.squirrel@webmail.caltech.edu>

Dear Carson,

Thanks for detailed explanation and help. Now we know the exact parameters
that should help us with generating good gene-model.

The genome for which we are working on gene predictions is
Echinoderm(sea-urchin). lamprey was the closest organism for training
augustus that I could find. A quick question for training augustus, there
is augustus_species option how would you go from training data generated
by zff2augustus_gbk.pl > train.gb as specified here
http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
generating the species folder that can be specified to augustus_species
option.

The average expected gene-length in our case is ~15kb.
We also have a good repeat library for our genome.

Thanks and regards,
Parul Kudtarkar

> For step 2 and 3, use lamprey rather than human in augustus.  For some
> reason the current version of augustus doesn't diplay it as an option for
> the species help menu (so I didn't see it), but it's there in
> ?/augustus/config/species/lamprey
>
> For any additional training, make copies into
> ?/augustus/config/species/lamprey2 and ?/augustus/config/species/lamprey3
>
> Thanks,
> Carson
>
>
>
> From:  Carson Holt <carsonhh at gmail.com>
> Date:  Friday, 7 December, 2012 10:22 AM
> To:  Daniel Ence <dence at genetics.utah.edu>, "maker-devel at yandell-lab.org"
> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
> Subject:  Re: [maker-devel] AED score
>
> Just to add to Daniels comments.
>
> Things to change in step 1:
>> protein= <just try and add more protein evidence in general>
>> est2genome=0
>> protein2genome=1
>> split_hit=20000
>> min_contig=50000
>
> Reasoning:
>> Your ESTs are very short especially if this is a lamprey species which
>> have
>> very long introns and really short exons.  In lamprey (i.e. Petromyzon
>> marinus), genes tend to be very long (remember gene lengths include
>> introns
>> and UTR and is not just the size of the coding sequence), so contigs
>> shorter
>> than 50kb are useless for training as you are unlikely to get nice
>> complete
>> gene models on those.  Also lampreys have very long introns, so you have
>> to
>> allow for bigger introns in alignments (split_hit parameter).  Finally
>> add as
>> much protein evidence from as many sources as possible.  Your maker
>> training
>> run will take a long time as proteins take forever to align, but because
>> of
>> the evolutionary distance of lamprey from everything else and the short
>> exon
>> structure of its genome, very little aligns directly to its genome from
>> other
>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>> species
>> because of what you said about the  augustus species file you are using.
>> Really the only thing closely related to lampreys unfortunately are
>> other
>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>> lamprey
>> (while they branch closely together on the tree of life, there are too
>> many
>> years since the last common ancestor).  So while they may have similar
>> issues
>> related to annotation (long introns and short exons etc.) they will not
>> really
>> match that well for the gene predictor or even protein alignments.
>
> Additional note:
>> I have training files for the lamprey species Petromyzon marinus for
>> both
>> Augustus and SNAP that I could share with you in a few week, when the
>> genome
>> publication is is released.  But before that happens, new gene models
>> will be
>> available  through the UCSC browser (hopefully within a couple of
>> weeks), and
>> gene models are already available through ENSEMBL.  Get those protein
>> files
>> for training, it may be a big help for you.  If you want early access to
>> the
>> lamprey training files for Augustus and SNAP, you would have to request
>> it
>> from Weiming Li at Michigan State University (the head of that genome
>> project).
>>
>
>
> Things to change in step 2:
>> Optimally you would be doing de novo training using mRNAseq results, but
>> with
>> on;ly sparse protein alignments and such a fragmented assembly, you are
>> probably better off just trying to adapt the human HMM files.  They
>> won't
>> match that well, but you probably won't have the evidence for De Novo
>> training.  First make a copy of the augustus human species directory and
>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>> ?/augustus/config/species/lamprey).  Use it as the base species for
>> retraining
>> augustus using your new models.  You will have to edit multiple files in
>> the
>> directory after you copy it so that they no longer say human or homo
>> sapiens
>> internally or in the file name.  Use maker2zff to generate the filtered
>> ZFF
>> file for training SNAP, but don't train SNAP.  Rather use the training
>> file to
>> better train Augustus info here (just ignore the CEGMA part) -->
>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>
>> MAKE a backup of the step 1 maker output directory and run step 2 in the
>> old
>> step 1 directory (this allows you to change the parameters and reuse
>> files
>> form step 1 so you don't have to recalculate all the protein and EST
>> alignments).  So control files for step 2 are identical to step 1 except
>> for
>> these parameters.
>>
>> protein2genome=0
>> augustus_species=lamprey
>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>
>> Don't both training SNAP here as you probably won't have enough data and
>> you
>> assembly is too fragmented for it to work well, so just stick to
>> augustus.
>> Try SNAP if you want just to see how well it works.  Manually open up
>> the
>> largest contigs in a viewer to look at the models produced from the
>> MAKER run
>> to see if they look reasonable (this will also help you decide whether
>> to keep
>> SNAP).
>>
>
> Things to change in step 3:
>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>> make
>> copies of ?/augustus/config/species/lamprey and save it to
>> ?/augustus/config/species/lamprey2 (editing all the files and names as
>> you did
>> in step 2). This way you don't loose that training data if you decide to
>> step
>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>
>> augustus_species=lamprey2
>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>
>> Make a backup of Step 2 and run step 3 in the old Step 2 directory (This
>> is
>> for file reuse, so the step will run fast).  This must be the exact same
>> step
>> directory as step 2 for the reuse trick to work.
>>
>> Manually review the models and if you are satisfied move to step 4.
>> Also note
>> that most parameters including the protein, EST, and repeats should not
>> change
>> from step1-step3, and should not be removed for step 4 either, you can
>> add
>> more evidence, but don't remove evidence (like the repeats).
>>
>>
> Things to change in step 4:
>> For this step, just set min_contig=10000 and rerun MAKER inside the step
>> 3
>> directory to get the smaller contigs annotated.  This should be your
>> final
>> step, although you can try altering other parameters or adding more
>> evidence
>> sources here etc.
>>
>>
> For other things to keep in mind, you should consider taking extra time to
> build a comprehensive library of repeats for your species, I know that
> Petromyzon marinus was virtually unannotatable until we had a very deep
> repeat library built for it.  Any repeat library should be used in all
> steps.  Also for lamprey, you will expect between 20,000-30,000 genes both
> because of your assemblies fragmentation and because of some ancestral
> genome duplication.  Also be aware that lampreys appear to undergo
> programmed genome loss in somatic tissues, so any gene count you get is
> only
> going to represent a maximum of 75-80% of all genes unless the assembly is
> derived from germline tissue.
>
> Thanks,
> Carson
>
>
>>
> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>
>> Hi Parul,
>>
>> In step one, if protein2genome isn't turned on, then the protein
>> alignments
>> wont be used to generate gene models. Carson said before to use
>> protein2genome
>> to generate gene models for your trainings set, but you should know that
>> those
>> data aren't being used right now.
>>
>> In step 2, you can include the est and protein evidence that you used in
>> step
>> one, and the ab-initio predictors will takes those data as hints to
>> guide
>> their predictions. Also, are you reannotating human here? I'm just
>> wondering
>> why the snap file is called Pult, but the augustus species model is
>> human.
>> Also, I think you should include the same masking files from step 1,
>> otherwise
>> the ab-initio predictors will be predicting on the unmasked sequence
>> which
>> will give you many spurious predictions.
>>
>> In step 3, I'm not certain what you mean by boot-strapping. The control
>> file
>> you sent for step 3 will just pass-through all of the data from before.
>>
>> In step 4, I think what you'll get is pretty close to what you already
>> had in
>> step 3. The gene models from step 3 are already based on the est and
>> protein
>> data from step 1, so without giving any different evidence or ab-initio
>> predictors, I think that you will just get the same gene models that you
>> got
>> from step 3. Those gene models are what you should be using to train
>> snap.
>> Also, is this the same genome as in the other steps? The genome file
>> here is
>> called genome.linear.fa, but before it was called genome.fa.
>>
>> Step 5. So maker uses both evidence and ab-initio predictions to create
>> models. If you don't give any evidence (EST or protein) maker will not
>> annotate any gene models. You have also changed the augustus species
>> model in
>> this step, but I don't know what you've gained by going from one species
>> to
>> another. You should be training augustus with the gene models and then
>> creating a new species model in augustus. As I understand it, the filter
>> only
>> operates on gene models, not ab-initio predictions or alignments, so it
>> probably isn't doing anything the way you have it set.
>>
>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>> mean by
>> boot-strapping here too.
>>
>> Hopefully that clears up some of the confusion with how maker works.
>> Carson
>> will probably have a lot of suggestions too.
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ________________________________________
>> From: Parul Kudtarkar [parulk at caltech.edu]
>> Sent: Thursday, December 06, 2012 10:08 AM
>> To: carsonhh at gmail.com
>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>> Subject: Re: [maker-devel] AED score
>>
>> Hi Carson,
>>
>> Once again thanks for a quick response. We expect to get 25,000 to
>> 30,000
>> genes.
>> Here are the step
>> Step1. EST and proteins are used to predict gene-models. the resulting
>> file is used as training data-set for SNAP in step2. est2genome is
>> turned
>> ON
>> Step2. Augustus and SNAP is used to predict genes.
>> Step3. The results are re-annoated(boot-strap)
>> Step4. EST and proteins are used to predict gene-models. The gff file
>> from
>> step3. is used as model_gff. The resulting file is used as training
>> data-set for SNAP in step2
>> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>> contig_size to 10kb
>>
>> Thanks and regards,
>> Parul Kudtarkar
>>
>> I have attached the configuration file for each step.
>>>  Your output has no genes.  They've all been filtered out.  The gene
>> predictions are left for reference purposes, but there are no gene
>> models
>>>  in the file.  You need to look at the type columns in the GFF3 file
>>> -->
>> match/match_part features are evidence and reference data but not
>> models.
>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>> just
>> want gene models in your file you can use the gff3_merge script with the
>> -g option, and it will only print out the gene models.
>>>  I think you may be misinterpreting what is happening at different
>>> steps,
>> as well as how to read the result files.  Could you give me a detailed
>> explanation of what you expect to get back together with your control
>> files and I can walk you through the configuration, and indicate what to
>> expect.  Also what was the report like from CEGMA. Could you include the
>> report file that shows how complete your genome is and how fragmented it
>> is?
>>>  Thanks,
>>>  Carson
>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>> Dear Carson,
>>>> Thanks for a quick response. keep_preds is set to 0
>>>> Though for previous step(ab-intio gene predictions keep_preds was set
>>>> to
>> 1, see Scaffold1_input.gff). I have also attached the output file
>> Scaffold1_out.gff.
>>>> Please advice.
>>>> Thanks and regards,
>>>> Parul Kudtarkar
>>>>>  You should always get all predictions, but should only get models
>> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>> keep_preds set.
>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>> your
>> threshold (not match/match_part features)?  If the first one is the
>>>>> case,
>>>>>  just set it to 0.  If the second one in the case, could you send me
>> example GFF3?
>>>>>  Thanks,
>>>>>  Carson
>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>> Dear Carson,
>>>>>> Thanks once again, we have limited experimental data with very short
>>>>>>  ESTs.
>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>> prediction(used as training dataset)and abinitio gene-prediction).
>> Here
>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>  however
>>>>>>  I
>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>  resulting
>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>  initial
>>>>>> gff3 file.
>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>  eukaryotic
>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>> file
>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes, 0
>>>>>> =
>> no
>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 =
>>>>>> no
>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>  no
>>>>>> #-----MAKER Behavior Options
>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound
>>>>>> by
>> 0
>>>>>> and 1)
>>>>>> Thanks and regards,
>>>>>> Parul Kudtarkar
>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>> partial
>>>>>>> at
>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>> those
>> by
>>>>>>>  using maker's est_gff option to pass in results from cufflinks or
>>>>>>> trinity.
>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
>> size,
>>>>>>> just
>>>>>>>  have maker skip them by setting the min_contig filter in the
>> maker_opts.ctl file.
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611 with
>> N50
>>>>>>>>  of
>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>> reason
>>>>>>>>  when
>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>> predicted
>> despite the model_gff file has few genes with scores less than 0.75?
>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>  There are certain characteristics that are apparent in this
>> contig.
>>>>>>>> First
>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>> also
>>>>>>>> have
>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>> getting
>> many
>>>>>>>>  of them to align spuriously which produces very short gene models
>> that
>>>>>>>> are
>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>> piece
>>>>>>>> of
>>>>>>>> a
>>>>>>>> gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>>  unless
>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>  protein
>>>>>>>> alignments also seem to be few and far between.  You probably need
>> to
>>>>>>>> add
>>>>>>>>  more proteins from a couple of related species, and you might
>> consider
>>>>>>>> using protein2genome rather than est2genome as a predictor if you
>> are
>>>>>>>> still working to generate a training set. Also est2genome produced
>> models
>>>>>>>>  almost always have an AED score near 0 so mixing est2genome with
>> the
>>>>>>>> AED_threshold with such limited protein support does create an
>> artificial
>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>  How many contigs do you have in total and what is the N50 value
>> for
>>>>>>>> the
>>>>>>>> assembly? If you have a large number of very short contigs, you
>>>>>>>> will
>>>>>>>>  get
>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>> contigs
>>>>>>>>  and
>>>>>>>> many contigs tend t be subtle rearrangements of other contigs just
>> assembled in a slightly different way (so you can get bits and
>> pieces
>>>>>>>>  of
>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>  confounding
>>>>>>>> factor if using the est2genome predictor with short ESTs.  I would
>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>  completeness
>>>>>>>> as
>>>>>>>>  well as get an estimate of fragmentation as one of the statistics
>>>>>>>> produced
>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>> those
>>>>>>>>  that
>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to be
>> shorter
>>>>>>>>  and less intron rich than other genes in the genome, so if CEGMA
>> gives
>>>>>>>>  a
>>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>>  pattern
>>>>>>>> can be expected to be even more exaggerated for other genes in the
>> genome.
>>>>>>>>  If your genome is highly fragmented or proteins do not align well
>> then
>>>>>>>> there are other strategies.  For example, some vertebrate genomes
>> end
>>>>>>>>  up
>>>>>>>> having extremely fragmented assemblies (on the order of 100,000
>> contigs),
>>>>>>>>  and if they are distantly related to other annotated species few
>>>>>>>> proteins
>>>>>>>>  may align to the contigs because the introns in the alignments
>> tend
>>>>>>>>  to
>>>>>>>> be
>>>>>>>>  so long and exons so short that it pushes down the significance
>> scores
>>>>>>>> too
>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
>> only
>>>>>>>>  way
>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>> Dear Carson and Daniel,
>>>>>>>> Thanks. I ran sample file for filtering genes based on AED score.
>> The
>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>> file
>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>  least
>>>>>>>>  5
>>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>>  predicted
>>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>>> attached
>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>> just
>>>>>>>> want
>>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>>> maker.
>>>>>>>> On
>>>>>>>>  the other hand, if you are trying to build a dataset for
>> training
>>>>>>>>  gene
>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>  dataset
>>>>>>>> for
>>>>>>>>  SNAP training.  There are a number of filters available. Just
>> call
>>>>>>>>  the
>>>>>>>> script once without parameters to see the options.
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>> wrote:
>>>>>>>> Hi Parul,
>>>>>>>> I think the way you described (with the maker_opts.ctl file) is
>> how
>>>>>>>> you
>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>> Daniel
>>>>>>>> Daniel Ence
>>>>>>>> Graduate Student
>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>> University of Utah
>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>> ________________________________________
>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>  Kudtarkar
>>>>>>>> [parulk at caltech.edu]
>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>> To: Parul Kudtarkar
>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>> Also, are there any other parameters that are required when
>> filtering
>>>>>>>> based on AED score?
>>>>>>>>  Hello Carson,
>>>>>>>>  Just to confirm, Is there a script that would filter gene
>> models
>>>>>>>> at
>>>>>>>> specific AED score.
>>>>>>>>  Alternatively if I were to do this within maker with regards
>> to
>>>>>>>> parameters
>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>> genes
>>>>>>>> gff3
>>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>> Thanks and regards,
>>>>>>>>  Parul Kudtarkar
>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>> 1
>>>>>>>>  is
>>>>>>>> worst
>>>>>>>>  as
>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>> parameter
>>>>>>>> to
>>>>>>>>  require better matching to the evidence by setting it closer
>> to
>>>>>>>> 0.
>>>>>>>> You
>>>>>>>>  can
>>>>>>>>  also try to increase protein homology evidence as some of
>> your
>>>>>>>> calls
>>>>>>>> may
>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>  --Carson
>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>> Dear Maker community,
>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>  based
>>>>>>>> prediction, I use this data-set to train SNAP as well as Augustus
>> predictions, followed by boot-strapping. I would typically expect
>> 20-30K
>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>  indicating
>>>>>>>>  too
>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>> predication/script to retain predictions with AED score 1 and if
>>>>>>>> yes
>>>>>>>> how
>>>>>>>> to go about this?
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>> _______________________________________________
>>>>>>>> maker-devel mailing list
>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>> -l
>>>>>>>> ab
>>>>>>>> .o
>>>>>>>> rg
>>>>>>>>  --
>>>>>>>>  Scientific Programmer
>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>  Beckman Institute,
>>>>>>>>  California Institute of Technology
>>>>>>>>  http://www.spbase.org
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>> _______________________________________________
>>>>>>>> maker-devel mailing list
>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>> b.
>>>>>>>> or
>>>>>>>> g
>>>>>>>> _______________________________________________
>>>>>>>> maker-devel mailing list
>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>> b.
>>>>>>>> or
>>>>>>>> g
>>>>>>>>  _______________________________________________
>>>>>>>>  maker-devel mailing list
>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>> .o
>>>>>>>> rg
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>> --
>>>> Scientific Programmer
>>>> Center for Computational Regulatory Genomics
>>>> Beckman Institute,
>>>> California Institute of Technology
>>>> http://www.spbase.org
>>
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>>
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From parulk at caltech.edu  Fri Dec  7 18:09:53 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Fri, 7 Dec 2012 17:09:53 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <2974.131.215.15.234.1354917989.squirrel@webmail.caltech.edu>
References: <CCE77941.16E3D%carsonhh@gmail.com>
	<2974.131.215.15.234.1354917989.squirrel@webmail.caltech.edu>
Message-ID: <2516.131.215.15.234.1354928993.squirrel@webmail.caltech.edu>

Sorry for not checking this before, just to answer my own question I just
found after reading augustus documentation that autoAugTrain.pl should
work for generating training dataset for Augustus from using the
gene-model hints from first pass run of maker and using
http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script to
generate training.gb

autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb

I believe should work better than using lamprey to train augustus.

Thanks and regards,
Parul Kudtarkar

> Dear Carson,
>
> Thanks for detailed explanation and help. Now we know the exact parameters
> that should help us with generating good gene-model.
>
> The genome for which we are working on gene predictions is
> Echinoderm(sea-urchin). lamprey was the closest organism for training
> augustus that I could find. A quick question for training augustus, there
> is augustus_species option how would you go from training data generated
> by zff2augustus_gbk.pl > train.gb as specified here
> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
> generating the species folder that can be specified to augustus_species
> option.
>
> The average expected gene-length in our case is ~15kb.
> We also have a good repeat library for our genome.
>
> Thanks and regards,
> Parul Kudtarkar
>
>> For step 2 and 3, use lamprey rather than human in augustus.  For some
>> reason the current version of augustus doesn't diplay it as an option
>> for
>> the species help menu (so I didn't see it), but it's there in
>> ?/augustus/config/species/lamprey
>>
>> For any additional training, make copies into
>> ?/augustus/config/species/lamprey2 and
>> ?/augustus/config/species/lamprey3
>>
>> Thanks,
>> Carson
>>
>>
>>
>> From:  Carson Holt <carsonhh at gmail.com>
>> Date:  Friday, 7 December, 2012 10:22 AM
>> To:  Daniel Ence <dence at genetics.utah.edu>,
>> "maker-devel at yandell-lab.org"
>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>> Subject:  Re: [maker-devel] AED score
>>
>> Just to add to Daniels comments.
>>
>> Things to change in step 1:
>>> protein= <just try and add more protein evidence in general>
>>> est2genome=0
>>> protein2genome=1
>>> split_hit=20000
>>> min_contig=50000
>>
>> Reasoning:
>>> Your ESTs are very short especially if this is a lamprey species which
>>> have
>>> very long introns and really short exons.  In lamprey (i.e. Petromyzon
>>> marinus), genes tend to be very long (remember gene lengths include
>>> introns
>>> and UTR and is not just the size of the coding sequence), so contigs
>>> shorter
>>> than 50kb are useless for training as you are unlikely to get nice
>>> complete
>>> gene models on those.  Also lampreys have very long introns, so you
>>> have
>>> to
>>> allow for bigger introns in alignments (split_hit parameter).  Finally
>>> add as
>>> much protein evidence from as many sources as possible.  Your maker
>>> training
>>> run will take a long time as proteins take forever to align, but
>>> because
>>> of
>>> the evolutionary distance of lamprey from everything else and the short
>>> exon
>>> structure of its genome, very little aligns directly to its genome from
>>> other
>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>> species
>>> because of what you said about the  augustus species file you are
>>> using.
>>> Really the only thing closely related to lampreys unfortunately are
>>> other
>>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>>> lamprey
>>> (while they branch closely together on the tree of life, there are too
>>> many
>>> years since the last common ancestor).  So while they may have similar
>>> issues
>>> related to annotation (long introns and short exons etc.) they will not
>>> really
>>> match that well for the gene predictor or even protein alignments.
>>
>> Additional note:
>>> I have training files for the lamprey species Petromyzon marinus for
>>> both
>>> Augustus and SNAP that I could share with you in a few week, when the
>>> genome
>>> publication is is released.  But before that happens, new gene models
>>> will be
>>> available  through the UCSC browser (hopefully within a couple of
>>> weeks), and
>>> gene models are already available through ENSEMBL.  Get those protein
>>> files
>>> for training, it may be a big help for you.  If you want early access
>>> to
>>> the
>>> lamprey training files for Augustus and SNAP, you would have to request
>>> it
>>> from Weiming Li at Michigan State University (the head of that genome
>>> project).
>>>
>>
>>
>> Things to change in step 2:
>>> Optimally you would be doing de novo training using mRNAseq results,
>>> but
>>> with
>>> on;ly sparse protein alignments and such a fragmented assembly, you are
>>> probably better off just trying to adapt the human HMM files.  They
>>> won't
>>> match that well, but you probably won't have the evidence for De Novo
>>> training.  First make a copy of the augustus human species directory
>>> and
>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>> retraining
>>> augustus using your new models.  You will have to edit multiple files
>>> in
>>> the
>>> directory after you copy it so that they no longer say human or homo
>>> sapiens
>>> internally or in the file name.  Use maker2zff to generate the filtered
>>> ZFF
>>> file for training SNAP, but don't train SNAP.  Rather use the training
>>> file to
>>> better train Augustus info here (just ignore the CEGMA part) -->
>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>
>>> MAKE a backup of the step 1 maker output directory and run step 2 in
>>> the
>>> old
>>> step 1 directory (this allows you to change the parameters and reuse
>>> files
>>> form step 1 so you don't have to recalculate all the protein and EST
>>> alignments).  So control files for step 2 are identical to step 1
>>> except
>>> for
>>> these parameters.
>>>
>>> protein2genome=0
>>> augustus_species=lamprey
>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>
>>> Don't both training SNAP here as you probably won't have enough data
>>> and
>>> you
>>> assembly is too fragmented for it to work well, so just stick to
>>> augustus.
>>> Try SNAP if you want just to see how well it works.  Manually open up
>>> the
>>> largest contigs in a viewer to look at the models produced from the
>>> MAKER run
>>> to see if they look reasonable (this will also help you decide whether
>>> to keep
>>> SNAP).
>>>
>>
>> Things to change in step 3:
>>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>>> make
>>> copies of ?/augustus/config/species/lamprey and save it to
>>> ?/augustus/config/species/lamprey2 (editing all the files and names as
>>> you did
>>> in step 2). This way you don't loose that training data if you decide
>>> to
>>> step
>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>
>>> augustus_species=lamprey2
>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>
>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>> (This
>>> is
>>> for file reuse, so the step will run fast).  This must be the exact
>>> same
>>> step
>>> directory as step 2 for the reuse trick to work.
>>>
>>> Manually review the models and if you are satisfied move to step 4.
>>> Also note
>>> that most parameters including the protein, EST, and repeats should not
>>> change
>>> from step1-step3, and should not be removed for step 4 either, you can
>>> add
>>> more evidence, but don't remove evidence (like the repeats).
>>>
>>>
>> Things to change in step 4:
>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>> step
>>> 3
>>> directory to get the smaller contigs annotated.  This should be your
>>> final
>>> step, although you can try altering other parameters or adding more
>>> evidence
>>> sources here etc.
>>>
>>>
>> For other things to keep in mind, you should consider taking extra time
>> to
>> build a comprehensive library of repeats for your species, I know that
>> Petromyzon marinus was virtually unannotatable until we had a very deep
>> repeat library built for it.  Any repeat library should be used in all
>> steps.  Also for lamprey, you will expect between 20,000-30,000 genes
>> both
>> because of your assemblies fragmentation and because of some ancestral
>> genome duplication.  Also be aware that lampreys appear to undergo
>> programmed genome loss in somatic tissues, so any gene count you get is
>> only
>> going to represent a maximum of 75-80% of all genes unless the assembly
>> is
>> derived from germline tissue.
>>
>> Thanks,
>> Carson
>>
>>
>>>
>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>
>>> Hi Parul,
>>>
>>> In step one, if protein2genome isn't turned on, then the protein
>>> alignments
>>> wont be used to generate gene models. Carson said before to use
>>> protein2genome
>>> to generate gene models for your trainings set, but you should know
>>> that
>>> those
>>> data aren't being used right now.
>>>
>>> In step 2, you can include the est and protein evidence that you used
>>> in
>>> step
>>> one, and the ab-initio predictors will takes those data as hints to
>>> guide
>>> their predictions. Also, are you reannotating human here? I'm just
>>> wondering
>>> why the snap file is called Pult, but the augustus species model is
>>> human.
>>> Also, I think you should include the same masking files from step 1,
>>> otherwise
>>> the ab-initio predictors will be predicting on the unmasked sequence
>>> which
>>> will give you many spurious predictions.
>>>
>>> In step 3, I'm not certain what you mean by boot-strapping. The control
>>> file
>>> you sent for step 3 will just pass-through all of the data from before.
>>>
>>> In step 4, I think what you'll get is pretty close to what you already
>>> had in
>>> step 3. The gene models from step 3 are already based on the est and
>>> protein
>>> data from step 1, so without giving any different evidence or ab-initio
>>> predictors, I think that you will just get the same gene models that
>>> you
>>> got
>>> from step 3. Those gene models are what you should be using to train
>>> snap.
>>> Also, is this the same genome as in the other steps? The genome file
>>> here is
>>> called genome.linear.fa, but before it was called genome.fa.
>>>
>>> Step 5. So maker uses both evidence and ab-initio predictions to create
>>> models. If you don't give any evidence (EST or protein) maker will not
>>> annotate any gene models. You have also changed the augustus species
>>> model in
>>> this step, but I don't know what you've gained by going from one
>>> species
>>> to
>>> another. You should be training augustus with the gene models and then
>>> creating a new species model in augustus. As I understand it, the
>>> filter
>>> only
>>> operates on gene models, not ab-initio predictions or alignments, so it
>>> probably isn't doing anything the way you have it set.
>>>
>>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>>> mean by
>>> boot-strapping here too.
>>>
>>> Hopefully that clears up some of the confusion with how maker works.
>>> Carson
>>> will probably have a lot of suggestions too.
>>>
>>> Thanks,
>>> Daniel
>>>
>>> Daniel Ence
>>> Graduate Student
>>> Eccles Institute of Human Genetics
>>> University of Utah
>>> 15 North 2030 East, Room 2100
>>> Salt Lake City, UT 84112-5330
>>> ________________________________________
>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>> Sent: Thursday, December 06, 2012 10:08 AM
>>> To: carsonhh at gmail.com
>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>> Subject: Re: [maker-devel] AED score
>>>
>>> Hi Carson,
>>>
>>> Once again thanks for a quick response. We expect to get 25,000 to
>>> 30,000
>>> genes.
>>> Here are the step
>>> Step1. EST and proteins are used to predict gene-models. the resulting
>>> file is used as training data-set for SNAP in step2. est2genome is
>>> turned
>>> ON
>>> Step2. Augustus and SNAP is used to predict genes.
>>> Step3. The results are re-annoated(boot-strap)
>>> Step4. EST and proteins are used to predict gene-models. The gff file
>>> from
>>> step3. is used as model_gff. The resulting file is used as training
>>> data-set for SNAP in step2
>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to 0.5
>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>>> contig_size to 10kb
>>>
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>
>>> I have attached the configuration file for each step.
>>>>  Your output has no genes.  They've all been filtered out.  The gene
>>> predictions are left for reference purposes, but there are no gene
>>> models
>>>>  in the file.  You need to look at the type columns in the GFF3 file
>>>> -->
>>> match/match_part features are evidence and reference data but not
>>> models.
>>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>>> just
>>> want gene models in your file you can use the gff3_merge script with
>>> the
>>> -g option, and it will only print out the gene models.
>>>>  I think you may be misinterpreting what is happening at different
>>>> steps,
>>> as well as how to read the result files.  Could you give me a detailed
>>> explanation of what you expect to get back together with your control
>>> files and I can walk you through the configuration, and indicate what
>>> to
>>> expect.  Also what was the report like from CEGMA. Could you include
>>> the
>>> report file that shows how complete your genome is and how fragmented
>>> it
>>> is?
>>>>  Thanks,
>>>>  Carson
>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>> Dear Carson,
>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>> Though for previous step(ab-intio gene predictions keep_preds was set
>>>>> to
>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>> Scaffold1_out.gff.
>>>>> Please advice.
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>>  You should always get all predictions, but should only get models
>>> (match/match_part) with AED scores less than 0.5.  You should never get
>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>> keep_preds set.
>>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>>> your
>>> threshold (not match/match_part features)?  If the first one is the
>>>>>> case,
>>>>>>  just set it to 0.  If the second one in the case, could you send me
>>> example GFF3?
>>>>>>  Thanks,
>>>>>>  Carson
>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Dear Carson,
>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>> short
>>>>>>>  ESTs.
>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>> prediction(used as training dataset)and abinitio gene-prediction).
>>> Here
>>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>>  however
>>>>>>>  I
>>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>>  resulting
>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>>  initial
>>>>>>> gff3 file.
>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>  eukaryotic
>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>> file
>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes,
>>>>>>> 0
>>>>>>> =
>>> no
>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 =
>>>>>>> no
>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>>  no
>>>>>>> #-----MAKER Behavior Options
>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound
>>>>>>> by
>>> 0
>>>>>>> and 1)
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>> partial
>>>>>>>> at
>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>> those
>>> by
>>>>>>>>  using maker's est_gff option to pass in results from cufflinks or
>>>>>>>> trinity.
>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
>>> size,
>>>>>>>> just
>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>> maker_opts.ctl file.
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611 with
>>> N50
>>>>>>>>>  of
>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>> reason
>>>>>>>>>  when
>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>> predicted
>>> despite the model_gff file has few genes with scores less than 0.75?
>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>  There are certain characteristics that are apparent in this
>>> contig.
>>>>>>>>> First
>>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>>> also
>>>>>>>>> have
>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>> getting
>>> many
>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>> models
>>> that
>>>>>>>>> are
>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>> piece
>>>>>>>>> of
>>>>>>>>> a
>>>>>>>>> gene.  I would turn off est2genome as a predictor for this reason
>>>>>>>>>  unless
>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>>  protein
>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>> need
>>> to
>>>>>>>>> add
>>>>>>>>>  more proteins from a couple of related species, and you might
>>> consider
>>>>>>>>> using protein2genome rather than est2genome as a predictor if you
>>> are
>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>> produced
>>> models
>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome with
>>> the
>>>>>>>>> AED_threshold with such limited protein support does create an
>>> artificial
>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>  How many contigs do you have in total and what is the N50 value
>>> for
>>>>>>>>> the
>>>>>>>>> assembly? If you have a large number of very short contigs, you
>>>>>>>>> will
>>>>>>>>>  get
>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>> contigs
>>>>>>>>>  and
>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>> just
>>> assembled in a slightly different way (so you can get bits and
>>> pieces
>>>>>>>>>  of
>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>  confounding
>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>> would
>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>  completeness
>>>>>>>>> as
>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>> statistics
>>>>>>>>> produced
>>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>>> those
>>>>>>>>>  that
>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to
>>>>>>>>> be
>>> shorter
>>>>>>>>>  and less intron rich than other genes in the genome, so if CEGMA
>>> gives
>>>>>>>>>  a
>>>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>>>  pattern
>>>>>>>>> can be expected to be even more exaggerated for other genes in
>>>>>>>>> the
>>> genome.
>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>> well
>>> then
>>>>>>>>> there are other strategies.  For example, some vertebrate genomes
>>> end
>>>>>>>>>  up
>>>>>>>>> having extremely fragmented assemblies (on the order of 100,000
>>> contigs),
>>>>>>>>>  and if they are distantly related to other annotated species few
>>>>>>>>> proteins
>>>>>>>>>  may align to the contigs because the introns in the alignments
>>> tend
>>>>>>>>>  to
>>>>>>>>> be
>>>>>>>>>  so long and exons so short that it pushes down the significance
>>> scores
>>>>>>>>> too
>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
>>> only
>>>>>>>>>  way
>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED score.
>>> The
>>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>>> file
>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>  least
>>>>>>>>>  5
>>>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>>>  predicted
>>>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>>>> attached
>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>> just
>>>>>>>>> want
>>>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>>>> maker.
>>>>>>>>> On
>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>> training
>>>>>>>>>  gene
>>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>>  dataset
>>>>>>>>> for
>>>>>>>>>  SNAP training.  There are a number of filters available. Just
>>> call
>>>>>>>>>  the
>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>> wrote:
>>>>>>>>> Hi Parul,
>>>>>>>>> I think the way you described (with the maker_opts.ctl file) is
>>> how
>>>>>>>>> you
>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>> Daniel
>>>>>>>>> Daniel Ence
>>>>>>>>> Graduate Student
>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>> University of Utah
>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>> ________________________________________
>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>  Kudtarkar
>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>> Also, are there any other parameters that are required when
>>> filtering
>>>>>>>>> based on AED score?
>>>>>>>>>  Hello Carson,
>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>> models
>>>>>>>>> at
>>>>>>>>> specific AED score.
>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>> to
>>>>>>>>> parameters
>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>> genes
>>>>>>>>> gff3
>>>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>>> Thanks and regards,
>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>> 1
>>>>>>>>>  is
>>>>>>>>> worst
>>>>>>>>>  as
>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>> parameter
>>>>>>>>> to
>>>>>>>>>  require better matching to the evidence by setting it closer
>>> to
>>>>>>>>> 0.
>>>>>>>>> You
>>>>>>>>>  can
>>>>>>>>>  also try to increase protein homology evidence as some of
>>> your
>>>>>>>>> calls
>>>>>>>>> may
>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>  --Carson
>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>> Dear Maker community,
>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>  based
>>>>>>>>> prediction, I use this data-set to train SNAP as well as Augustus
>>> predictions, followed by boot-strapping. I would typically expect
>>> 20-30K
>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>  indicating
>>>>>>>>>  too
>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>> predication/script to retain predictions with AED score 1 and if
>>>>>>>>> yes
>>>>>>>>> how
>>>>>>>>> to go about this?
>>>>>>>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>> -l
>>>>>>>>> ab
>>>>>>>>> .o
>>>>>>>>> rg
>>>>>>>>>  --
>>>>>>>>>  Scientific Programmer
>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>  Beckman Institute,
>>>>>>>>>  California Institute of Technology
>>>>>>>>>  http://www.spbase.org
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>>> b.
>>>>>>>>> or
>>>>>>>>> g
>>>>>>>>> _______________________________________________
>>>>>>>>> maker-devel mailing list
>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-la
>>> b.
>>>>>>>>> or
>>>>>>>>> g
>>>>>>>>>  _______________________________________________
>>>>>>>>>  maker-devel mailing list
>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab
>>> .o
>>>>>>>>> rg
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>>
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>>
>>>
>>
>>
>>
>
>
> --
> Scientific Programmer
> Center for Computational Regulatory Genomics
> Beckman Institute,
> California Institute of Technology
> http://www.spbase.org
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From carsonhh at gmail.com  Fri Dec  7 18:23:18 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 07 Dec 2012 20:23:18 -0500
Subject: [maker-devel] AED score
In-Reply-To: <2516.131.215.15.234.1354928993.squirrel@webmail.caltech.edu>
Message-ID: <CCE7FF16.16F0A%carsonhh@gmail.com>

Yes.  Lamprey is not a good match for sea urchin.  When training Augusuts
you can sometimes use other genomes as starting points and let Augustus
then modify that species to match the models you provided, which can be
better than de novo training under certain circumstances. But given sea
urchin's evolutionary distance from all the other species bundled with
augustus, its probably not a good starting point.  So protein2genome
derived models and cegma based training are probably your best options.

--Carson


On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Sorry for not checking this before, just to answer my own question I just
>found after reading augustus documentation that autoAugTrain.pl should
>work for generating training dataset for Augustus from using the
>gene-model hints from first pass run of maker and using
>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script to
>generate training.gb
>
>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>
>I believe should work better than using lamprey to train augustus.
>
>Thanks and regards,
>Parul Kudtarkar
>
>> Dear Carson,
>>
>> Thanks for detailed explanation and help. Now we know the exact
>>parameters
>> that should help us with generating good gene-model.
>>
>> The genome for which we are working on gene predictions is
>> Echinoderm(sea-urchin). lamprey was the closest organism for training
>> augustus that I could find. A quick question for training augustus,
>>there
>> is augustus_species option how would you go from training data generated
>> by zff2augustus_gbk.pl > train.gb as specified here
>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>> generating the species folder that can be specified to augustus_species
>> option.
>>
>> The average expected gene-length in our case is ~15kb.
>> We also have a good repeat library for our genome.
>>
>> Thanks and regards,
>> Parul Kudtarkar
>>
>>> For step 2 and 3, use lamprey rather than human in augustus.  For some
>>> reason the current version of augustus doesn't diplay it as an option
>>> for
>>> the species help menu (so I didn't see it), but it's there in
>>> ?/augustus/config/species/lamprey
>>>
>>> For any additional training, make copies into
>>> ?/augustus/config/species/lamprey2 and
>>> ?/augustus/config/species/lamprey3
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>
>>> From:  Carson Holt <carsonhh at gmail.com>
>>> Date:  Friday, 7 December, 2012 10:22 AM
>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>> "maker-devel at yandell-lab.org"
>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>> Subject:  Re: [maker-devel] AED score
>>>
>>> Just to add to Daniels comments.
>>>
>>> Things to change in step 1:
>>>> protein= <just try and add more protein evidence in general>
>>>> est2genome=0
>>>> protein2genome=1
>>>> split_hit=20000
>>>> min_contig=50000
>>>
>>> Reasoning:
>>>> Your ESTs are very short especially if this is a lamprey species which
>>>> have
>>>> very long introns and really short exons.  In lamprey (i.e. Petromyzon
>>>> marinus), genes tend to be very long (remember gene lengths include
>>>> introns
>>>> and UTR and is not just the size of the coding sequence), so contigs
>>>> shorter
>>>> than 50kb are useless for training as you are unlikely to get nice
>>>> complete
>>>> gene models on those.  Also lampreys have very long introns, so you
>>>> have
>>>> to
>>>> allow for bigger introns in alignments (split_hit parameter).  Finally
>>>> add as
>>>> much protein evidence from as many sources as possible.  Your maker
>>>> training
>>>> run will take a long time as proteins take forever to align, but
>>>> because
>>>> of
>>>> the evolutionary distance of lamprey from everything else and the
>>>>short
>>>> exon
>>>> structure of its genome, very little aligns directly to its genome
>>>>from
>>>> other
>>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>>> species
>>>> because of what you said about the  augustus species file you are
>>>> using.
>>>> Really the only thing closely related to lampreys unfortunately are
>>>> other
>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>>>> lamprey
>>>> (while they branch closely together on the tree of life, there are too
>>>> many
>>>> years since the last common ancestor).  So while they may have similar
>>>> issues
>>>> related to annotation (long introns and short exons etc.) they will
>>>>not
>>>> really
>>>> match that well for the gene predictor or even protein alignments.
>>>
>>> Additional note:
>>>> I have training files for the lamprey species Petromyzon marinus for
>>>> both
>>>> Augustus and SNAP that I could share with you in a few week, when the
>>>> genome
>>>> publication is is released.  But before that happens, new gene models
>>>> will be
>>>> available  through the UCSC browser (hopefully within a couple of
>>>> weeks), and
>>>> gene models are already available through ENSEMBL.  Get those protein
>>>> files
>>>> for training, it may be a big help for you.  If you want early access
>>>> to
>>>> the
>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>request
>>>> it
>>>> from Weiming Li at Michigan State University (the head of that genome
>>>> project).
>>>>
>>>
>>>
>>> Things to change in step 2:
>>>> Optimally you would be doing de novo training using mRNAseq results,
>>>> but
>>>> with
>>>> on;ly sparse protein alignments and such a fragmented assembly, you
>>>>are
>>>> probably better off just trying to adapt the human HMM files.  They
>>>> won't
>>>> match that well, but you probably won't have the evidence for De Novo
>>>> training.  First make a copy of the augustus human species directory
>>>> and
>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>>> retraining
>>>> augustus using your new models.  You will have to edit multiple files
>>>> in
>>>> the
>>>> directory after you copy it so that they no longer say human or homo
>>>> sapiens
>>>> internally or in the file name.  Use maker2zff to generate the
>>>>filtered
>>>> ZFF
>>>> file for training SNAP, but don't train SNAP.  Rather use the training
>>>> file to
>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>
>>>> MAKE a backup of the step 1 maker output directory and run step 2 in
>>>> the
>>>> old
>>>> step 1 directory (this allows you to change the parameters and reuse
>>>> files
>>>> form step 1 so you don't have to recalculate all the protein and EST
>>>> alignments).  So control files for step 2 are identical to step 1
>>>> except
>>>> for
>>>> these parameters.
>>>>
>>>> protein2genome=0
>>>> augustus_species=lamprey
>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>
>>>> Don't both training SNAP here as you probably won't have enough data
>>>> and
>>>> you
>>>> assembly is too fragmented for it to work well, so just stick to
>>>> augustus.
>>>> Try SNAP if you want just to see how well it works.  Manually open up
>>>> the
>>>> largest contigs in a viewer to look at the models produced from the
>>>> MAKER run
>>>> to see if they look reasonable (this will also help you decide whether
>>>> to keep
>>>> SNAP).
>>>>
>>>
>>> Things to change in step 3:
>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>>>> make
>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>> ?/augustus/config/species/lamprey2 (editing all the files and names as
>>>> you did
>>>> in step 2). This way you don't loose that training data if you decide
>>>> to
>>>> step
>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>
>>>> augustus_species=lamprey2
>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>
>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>> (This
>>>> is
>>>> for file reuse, so the step will run fast).  This must be the exact
>>>> same
>>>> step
>>>> directory as step 2 for the reuse trick to work.
>>>>
>>>> Manually review the models and if you are satisfied move to step 4.
>>>> Also note
>>>> that most parameters including the protein, EST, and repeats should
>>>>not
>>>> change
>>>> from step1-step3, and should not be removed for step 4 either, you can
>>>> add
>>>> more evidence, but don't remove evidence (like the repeats).
>>>>
>>>>
>>> Things to change in step 4:
>>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>>> step
>>>> 3
>>>> directory to get the smaller contigs annotated.  This should be your
>>>> final
>>>> step, although you can try altering other parameters or adding more
>>>> evidence
>>>> sources here etc.
>>>>
>>>>
>>> For other things to keep in mind, you should consider taking extra time
>>> to
>>> build a comprehensive library of repeats for your species, I know that
>>> Petromyzon marinus was virtually unannotatable until we had a very deep
>>> repeat library built for it.  Any repeat library should be used in all
>>> steps.  Also for lamprey, you will expect between 20,000-30,000 genes
>>> both
>>> because of your assemblies fragmentation and because of some ancestral
>>> genome duplication.  Also be aware that lampreys appear to undergo
>>> programmed genome loss in somatic tissues, so any gene count you get is
>>> only
>>> going to represent a maximum of 75-80% of all genes unless the assembly
>>> is
>>> derived from germline tissue.
>>>
>>> Thanks,
>>> Carson
>>>
>>>
>>>>
>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>
>>>> Hi Parul,
>>>>
>>>> In step one, if protein2genome isn't turned on, then the protein
>>>> alignments
>>>> wont be used to generate gene models. Carson said before to use
>>>> protein2genome
>>>> to generate gene models for your trainings set, but you should know
>>>> that
>>>> those
>>>> data aren't being used right now.
>>>>
>>>> In step 2, you can include the est and protein evidence that you used
>>>> in
>>>> step
>>>> one, and the ab-initio predictors will takes those data as hints to
>>>> guide
>>>> their predictions. Also, are you reannotating human here? I'm just
>>>> wondering
>>>> why the snap file is called Pult, but the augustus species model is
>>>> human.
>>>> Also, I think you should include the same masking files from step 1,
>>>> otherwise
>>>> the ab-initio predictors will be predicting on the unmasked sequence
>>>> which
>>>> will give you many spurious predictions.
>>>>
>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>control
>>>> file
>>>> you sent for step 3 will just pass-through all of the data from
>>>>before.
>>>>
>>>> In step 4, I think what you'll get is pretty close to what you already
>>>> had in
>>>> step 3. The gene models from step 3 are already based on the est and
>>>> protein
>>>> data from step 1, so without giving any different evidence or
>>>>ab-initio
>>>> predictors, I think that you will just get the same gene models that
>>>> you
>>>> got
>>>> from step 3. Those gene models are what you should be using to train
>>>> snap.
>>>> Also, is this the same genome as in the other steps? The genome file
>>>> here is
>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>
>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>create
>>>> models. If you don't give any evidence (EST or protein) maker will not
>>>> annotate any gene models. You have also changed the augustus species
>>>> model in
>>>> this step, but I don't know what you've gained by going from one
>>>> species
>>>> to
>>>> another. You should be training augustus with the gene models and then
>>>> creating a new species model in augustus. As I understand it, the
>>>> filter
>>>> only
>>>> operates on gene models, not ab-initio predictions or alignments, so
>>>>it
>>>> probably isn't doing anything the way you have it set.
>>>>
>>>> Step 6. I think step 5 and 6 should be combined. I don't know what you
>>>> mean by
>>>> boot-strapping here too.
>>>>
>>>> Hopefully that clears up some of the confusion with how maker works.
>>>> Carson
>>>> will probably have a lot of suggestions too.
>>>>
>>>> Thanks,
>>>> Daniel
>>>>
>>>> Daniel Ence
>>>> Graduate Student
>>>> Eccles Institute of Human Genetics
>>>> University of Utah
>>>> 15 North 2030 East, Room 2100
>>>> Salt Lake City, UT 84112-5330
>>>> ________________________________________
>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>> To: carsonhh at gmail.com
>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>> Subject: Re: [maker-devel] AED score
>>>>
>>>> Hi Carson,
>>>>
>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>> 30,000
>>>> genes.
>>>> Here are the step
>>>> Step1. EST and proteins are used to predict gene-models. the resulting
>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>> turned
>>>> ON
>>>> Step2. Augustus and SNAP is used to predict genes.
>>>> Step3. The results are re-annoated(boot-strap)
>>>> Step4. EST and proteins are used to predict gene-models. The gff file
>>>> from
>>>> step3. is used as model_gff. The resulting file is used as training
>>>> data-set for SNAP in step2
>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to
>>>>0.5
>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5 and
>>>> contig_size to 10kb
>>>>
>>>> Thanks and regards,
>>>> Parul Kudtarkar
>>>>
>>>> I have attached the configuration file for each step.
>>>>>  Your output has no genes.  They've all been filtered out.  The gene
>>>> predictions are left for reference purposes, but there are no gene
>>>> models
>>>>>  in the file.  You need to look at the type columns in the GFF3 file
>>>>> -->
>>>> match/match_part features are evidence and reference data but not
>>>> models.
>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>>>> just
>>>> want gene models in your file you can use the gff3_merge script with
>>>> the
>>>> -g option, and it will only print out the gene models.
>>>>>  I think you may be misinterpreting what is happening at different
>>>>> steps,
>>>> as well as how to read the result files.  Could you give me a detailed
>>>> explanation of what you expect to get back together with your control
>>>> files and I can walk you through the configuration, and indicate what
>>>> to
>>>> expect.  Also what was the report like from CEGMA. Could you include
>>>> the
>>>> report file that shows how complete your genome is and how fragmented
>>>> it
>>>> is?
>>>>>  Thanks,
>>>>>  Carson
>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>> Dear Carson,
>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>> Though for previous step(ab-intio gene predictions keep_preds was
>>>>>>set
>>>>>> to
>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>> Scaffold1_out.gff.
>>>>>> Please advice.
>>>>>> Thanks and regards,
>>>>>> Parul Kudtarkar
>>>>>>>  You should always get all predictions, but should only get models
>>>> (match/match_part) with AED scores less than 0.5.  You should never
>>>>get
>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>>> keep_preds set.
>>>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>>>> your
>>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>> case,
>>>>>>>  just set it to 0.  If the second one in the case, could you send
>>>>>>>me
>>>> example GFF3?
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>> Dear Carson,
>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>> short
>>>>>>>>  ESTs.
>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>> prediction(used as training dataset)and abinitio gene-prediction).
>>>> Here
>>>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>>>  however
>>>>>>>>  I
>>>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>>>  resulting
>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>>>  initial
>>>>>>>> gff3 file.
>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>>  eukaryotic
>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>>> file
>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 = yes,
>>>>>>>> 0
>>>>>>>> =
>>>> no
>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0 =
>>>>>>>> no
>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>>>  no
>>>>>>>> #-----MAKER Behavior Options
>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed (bound
>>>>>>>> by
>>>> 0
>>>>>>>> and 1)
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>>> partial
>>>>>>>>> at
>>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>>> those
>>>> by
>>>>>>>>>  using maker's est_gff option to pass in results from cufflinks
>>>>>>>>>or
>>>>>>>>> trinity.
>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
>>>> size,
>>>>>>>>> just
>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>> maker_opts.ctl file.
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>with
>>>> N50
>>>>>>>>>>  of
>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>> reason
>>>>>>>>>>  when
>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>> predicted
>>>> despite the model_gff file has few genes with scores less than 0.75?
>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>> contig.
>>>>>>>>>> First
>>>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>>>> also
>>>>>>>>>> have
>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>> getting
>>>> many
>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>> models
>>>> that
>>>>>>>>>> are
>>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>>> piece
>>>>>>>>>> of
>>>>>>>>>> a
>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>reason
>>>>>>>>>>  unless
>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>>>  protein
>>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>>> need
>>>> to
>>>>>>>>>> add
>>>>>>>>>>  more proteins from a couple of related species, and you might
>>>> consider
>>>>>>>>>> using protein2genome rather than est2genome as a predictor if
>>>>>>>>>>you
>>>> are
>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>> produced
>>>> models
>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>with
>>>> the
>>>>>>>>>> AED_threshold with such limited protein support does create an
>>>> artificial
>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>  How many contigs do you have in total and what is the N50 value
>>>> for
>>>>>>>>>> the
>>>>>>>>>> assembly? If you have a large number of very short contigs, you
>>>>>>>>>> will
>>>>>>>>>>  get
>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>> contigs
>>>>>>>>>>  and
>>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>>> just
>>>> assembled in a slightly different way (so you can get bits and
>>>> pieces
>>>>>>>>>>  of
>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>  confounding
>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>> would
>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>  completeness
>>>>>>>>>> as
>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>> statistics
>>>>>>>>>> produced
>>>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>>>> those
>>>>>>>>>>  that
>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to
>>>>>>>>>> be
>>>> shorter
>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>CEGMA
>>>> gives
>>>>>>>>>>  a
>>>>>>>>>> high partial percentage and a low complete percentage, then this
>>>>>>>>>>  pattern
>>>>>>>>>> can be expected to be even more exaggerated for other genes in
>>>>>>>>>> the
>>>> genome.
>>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>>> well
>>>> then
>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>genomes
>>>> end
>>>>>>>>>>  up
>>>>>>>>>> having extremely fragmented assemblies (on the order of 100,000
>>>> contigs),
>>>>>>>>>>  and if they are distantly related to other annotated species
>>>>>>>>>>few
>>>>>>>>>> proteins
>>>>>>>>>>  may align to the contigs because the introns in the alignments
>>>> tend
>>>>>>>>>>  to
>>>>>>>>>> be
>>>>>>>>>>  so long and exons so short that it pushes down the significance
>>>> scores
>>>>>>>>>> too
>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if not
>>>> only
>>>>>>>>>>  way
>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>  Thanks,
>>>>>>>>>>  Carson
>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>score.
>>>> The
>>>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>>>> file
>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>  least
>>>>>>>>>>  5
>>>>>>>>>> genes with AED score less than 0.75. However there were no genes
>>>>>>>>>>  predicted
>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have also
>>>>>>>>>> attached
>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>> just
>>>>>>>>>> want
>>>>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>>>>> maker.
>>>>>>>>>> On
>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>> training
>>>>>>>>>>  gene
>>>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>>>  dataset
>>>>>>>>>> for
>>>>>>>>>>  SNAP training.  There are a number of filters available. Just
>>>> call
>>>>>>>>>>  the
>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>  Thanks,
>>>>>>>>>>  Carson
>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>> wrote:
>>>>>>>>>> Hi Parul,
>>>>>>>>>> I think the way you described (with the maker_opts.ctl file) is
>>>> how
>>>>>>>>>> you
>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>> Daniel
>>>>>>>>>> Daniel Ence
>>>>>>>>>> Graduate Student
>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>> University of Utah
>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>> ________________________________________
>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>  Kudtarkar
>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>> Also, are there any other parameters that are required when
>>>> filtering
>>>>>>>>>> based on AED score?
>>>>>>>>>>  Hello Carson,
>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>> models
>>>>>>>>>> at
>>>>>>>>>> specific AED score.
>>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>>> to
>>>>>>>>>> parameters
>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>> genes
>>>>>>>>>> gff3
>>>>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>>>> Thanks and regards,
>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>>> 1
>>>>>>>>>>  is
>>>>>>>>>> worst
>>>>>>>>>>  as
>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>> parameter
>>>>>>>>>> to
>>>>>>>>>>  require better matching to the evidence by setting it closer
>>>> to
>>>>>>>>>> 0.
>>>>>>>>>> You
>>>>>>>>>>  can
>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>> your
>>>>>>>>>> calls
>>>>>>>>>> may
>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>  --Carson
>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>> Dear Maker community,
>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>  based
>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>Augustus
>>>> predictions, followed by boot-strapping. I would typically expect
>>>> 20-30K
>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>  indicating
>>>>>>>>>>  too
>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>> predication/script to retain predictions with AED score 1 and if
>>>>>>>>>> yes
>>>>>>>>>> how
>>>>>>>>>> to go about this?
>>>>>>>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>> -l
>>>>>>>>>> ab
>>>>>>>>>> .o
>>>>>>>>>> rg
>>>>>>>>>>  --
>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>> 
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>a
>>>> b.
>>>>>>>>>> or
>>>>>>>>>> g
>>>>>>>>>> _______________________________________________
>>>>>>>>>> maker-devel mailing list
>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>> 
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>a
>>>> b.
>>>>>>>>>> or
>>>>>>>>>> g
>>>>>>>>>>  _______________________________________________
>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>> 
>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>ab
>>>> .o
>>>>>>>>>> rg
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>>
>>>>
>>>> --
>>>> Scientific Programmer
>>>> Center for Computational Regulatory Genomics
>>>> Beckman Institute,
>>>> California Institute of Technology
>>>> http://www.spbase.org
>>>>
>>>> --
>>>> Scientific Programmer
>>>> Center for Computational Regulatory Genomics
>>>> Beckman Institute,
>>>> California Institute of Technology
>>>> http://www.spbase.org
>>>>
>>>>
>>>>
>>>
>>>
>>>
>>
>>
>> --
>> Scientific Programmer
>> Center for Computational Regulatory Genomics
>> Beckman Institute,
>> California Institute of Technology
>> http://www.spbase.org
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>





From mark.rose at syngenta.com  Sat Dec  8 09:06:00 2012
From: mark.rose at syngenta.com (mark.rose at syngenta.com)
Date: Sat, 8 Dec 2012 11:06:00 -0500
Subject: [maker-devel] FW: maker error
In-Reply-To: <50C36102.6080306@mark62.me>
References: <50C36102.6080306@mark62.me>
Message-ID: <F0C46C4D691E2047A95E0293D5660AD00BC1359B99@USETCMSXMB03.NAFTA.SYNGENTA.ORG>

Hi

I just installed maker and am trying to run it with the sample data but get the following error:

$ maker
STATUS: Parsing control files...
WARNING: RepBase is not installed for RepeatMasker. This limits RepeatMasker's functionality and makes the model_org option in the control files virtually meaningless. MAKER will now reconfigure for simple repeat masking only.
STATUS: Processing and indexing input FASTA files...
Segmentation fault (core dumped)

I've attached the config files and the output of $maker --debug

Thanks for your help

Mark




This message may contain confidential information. If you are not the designated recipient, please notify the sender immediately, and delete the original and any copies. Any use of the message by you is prohibited. 
-------------- next part --------------
****MODULE VERSION INFO
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	UNKNOWN	Bio::Search::HSP::PhatHSP::fgenesh	/usr/local/genome/maker/bin/../lib/Bio/Search/HSP/PhatHSP/fgenesh.pm
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	UNKNOWN	Bio::Search::HSP::PhatHSP::gff3	/usr/local/genome/maker/bin/../lib/Bio/Search/HSP/PhatHSP/gff3.pm
	UNKNOWN	Bio::Search::HSP::PhatHSP::protein2genome	/usr/local/genome/maker/bin/../lib/Bio/Search/HSP/PhatHSP/protein2genome.pm
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	0.31	Clone	/usr/lib/perl5/Clone.pm
	UNKNOWN	Config	/usr/lib/perl/5.14/Config.pm
	3.33	Cwd	/usr/lib/perl5/Cwd.pm
	1.35	DBD::SQLite	/usr/lib/perl5/DBD/SQLite.pm
	1.616	DBI	/usr/lib/perl5/DBI.pm
	1.821	DB_File	/usr/lib/perl/5.14/DB_File.pm
	2.130_02	Data::Dumper	/usr/lib/perl/5.14/Data/Dumper.pm
	0.11	Datastore::Base	/usr/local/genome/maker/bin/../lib/Datastore/Base.pm
	0.01	Datastore::MD5	/usr/local/genome/maker/bin/../lib/Datastore/MD5.pm
	2.51	Digest::MD5	/usr/lib/perl/5.14/Digest/MD5.pm
	1.16	Digest::base	/usr/share/perl/5.14/Digest/base.pm
	UNKNOWN	Dumper::GFF::GFFV3	/usr/local/genome/maker/bin/../lib/Dumper/GFF/GFFV3.pm
	UNKNOWN	Dumper::XML::Game	/usr/local/genome/maker/bin/../lib/Dumper/XML/Game.pm
	UNKNOWN	Dumper::XML::Game_Xml	/usr/local/genome/maker/bin/../lib/Dumper/XML/Game_Xml.pm
	1.13	DynaLoader	/usr/lib/perl/5.14/DynaLoader.pm
	1.13	Errno	/usr/lib/perl/5.14/Errno.pm
	0.17015	Error	/usr/local/genome/maker/bin/../lib/Error.pm
	UNKNOWN	Error::Simple	/usr/local/genome/maker/bin/../lib/Error/Simple.pm
	5.64_03	Exporter	/usr/share/perl/5.14/Exporter.pm
	5.64_03	Exporter::Heavy	/usr/share/perl/5.14/Exporter/Heavy.pm
	UNKNOWN	Fasta	/usr/local/genome/maker/bin/../lib/Fasta.pm
	UNKNOWN	FastaChunk	/usr/local/genome/maker/bin/../lib/FastaChunk.pm
	UNKNOWN	FastaChunker	/usr/local/genome/maker/bin/../lib/FastaChunker.pm
	UNKNOWN	FastaDB	/usr/local/genome/maker/bin/../lib/FastaDB.pm
	UNKNOWN	FastaFile	/usr/local/genome/maker/bin/../lib/FastaFile.pm
	UNKNOWN	FastaSeq	/usr/local/genome/maker/bin/../lib/FastaSeq.pm
	1.11	Fcntl	/usr/lib/perl/5.14/Fcntl.pm
	2.82	File::Basename	/usr/share/perl/5.14/File/Basename.pm
	2.21	File::Copy	/usr/share/perl/5.14/File/Copy.pm
	1.13	File::Glob	/usr/lib/perl/5.14/File/Glob.pm
	1.20	File::NFSLock	/usr/local/genome/maker/bin/../lib/File/NFSLock.pm
	2.08_01	File::Path	/usr/share/perl/5.14/File/Path.pm
	3.33	File::Spec	/usr/lib/perl5/File/Spec.pm
	3.33	File::Spec::Unix	/usr/lib/perl5/File/Spec/Unix.pm
	0.22	File::Temp	/usr/share/perl/5.14/File/Temp.pm
	1.09	File::Which	/usr/local/genome/maker/bin/../lib/File/Which.pm
	2.02	FileHandle	/usr/share/perl/5.14/FileHandle.pm
	1.50	FindBin	/usr/share/perl/5.14/FindBin.pm
	UNKNOWN	GFFDB	/usr/local/genome/maker/bin/../lib/GFFDB.pm
	UNKNOWN	GI	/usr/local/genome/maker/bin/../lib/GI.pm
	2.38	Getopt::Long	/usr/share/perl/5.14/Getopt/Long.pm
	6.00	HTTP::Date	/usr/share/perl5/HTTP/Date.pm
	6.04	HTTP::Headers	/usr/local/share/perl/5.14.2/HTTP/Headers.pm
	6.04	HTTP::Message	/usr/local/share/perl/5.14.2/HTTP/Message.pm
	6.00	HTTP::Request	/usr/local/share/perl/5.14.2/HTTP/Request.pm
	6.04	HTTP::Response	/usr/local/share/perl/5.14.2/HTTP/Response.pm
	6.03	HTTP::Status	/usr/local/share/perl/5.14.2/HTTP/Status.pm
	1.25_04	IO	/usr/lib/perl/5.14/IO.pm
	1.15	IO::File	/usr/lib/perl/5.14/IO/File.pm
	1.31	IO::Handle	/usr/lib/perl/5.14/IO/Handle.pm
	1.1	IO::Seekable	/usr/lib/perl/5.14/IO/Seekable.pm
	1.20	IO::Select	/usr/lib/perl/5.14/IO/Select.pm
	1.32	IO::Socket	/usr/lib/perl/5.14/IO/Socket.pm
	1.31	IO::Socket::INET	/usr/lib/perl/5.14/IO/Socket/INET.pm
	1.23	IO::Socket::UNIX	/usr/lib/perl/5.14/IO/Socket/UNIX.pm
	1.09	IPC::Open3	/usr/share/perl/5.14/IPC/Open3.pm
	0.51	Inline	/usr/local/share/perl/5.14.2/Inline.pm
	UNKNOWN	Inline::denter	/usr/local/share/perl/5.14.2/Inline/denter.pm
	UNKNOWN	Iterator	/usr/local/genome/maker/bin/../lib/Iterator.pm
	UNKNOWN	Iterator::Any	/usr/local/genome/maker/bin/../lib/Iterator/Any.pm
	UNKNOWN	Iterator::Fasta	/usr/local/genome/maker/bin/../lib/Iterator/Fasta.pm
	UNKNOWN	Iterator::GFF3	/usr/local/genome/maker/bin/../lib/Iterator/GFF3.pm
	6.04	LWP	/usr/local/share/perl/5.14.2/LWP.pm
	UNKNOWN	LWP::MemberMixin	/usr/local/share/perl/5.14.2/LWP/MemberMixin.pm
	6.00	LWP::Protocol	/usr/local/share/perl/5.14.2/LWP/Protocol.pm
	6.04	LWP::UserAgent	/usr/local/share/perl/5.14.2/LWP/UserAgent.pm
	0.33	List::MoreUtils	/usr/lib/perl5/List/MoreUtils.pm
	1.23	List::Util	/usr/lib/perl/5.14/List/Util.pm
	UNKNOWN	MAKER::ConfigData	/usr/local/genome/maker/bin/../perl/lib/MAKER/ConfigData.pm
	1.24	POSIX	/usr/lib/perl/5.14/POSIX.pm
	0.01	Parallel::Application::MPI	/usr/local/genome/maker/bin/../perl/lib/Parallel/Application/MPI.pm
	0.02	Perl::Unsafe::Signals	/usr/local/lib/perl/5.14.2/Perl/Unsafe/Signals.pm
	UNKNOWN	PhatHit_utils	/usr/local/genome/maker/bin/../lib/PhatHit_utils.pm
	UNKNOWN	PostData	/usr/local/genome/maker/bin/../lib/PostData.pm
	1.0	Proc::ProcessTable_simple	/usr/local/genome/maker/bin/../lib/Proc/ProcessTable_simple.pm
	1.0	Proc::Signal	/usr/local/genome/maker/bin/../lib/Proc/Signal.pm
	UNKNOWN	Process::MpiChunk	/usr/local/genome/maker/bin/../lib/Process/MpiChunk.pm
	UNKNOWN	Process::MpiTiers	/usr/local/genome/maker/bin/../lib/Process/MpiTiers.pm
	1.23	Scalar::Util	/usr/lib/perl/5.14/Scalar/Util.pm
	1.02	SelectSaver	/usr/share/perl/5.14/SelectSaver.pm
	UNKNOWN	Shadower	/usr/local/genome/maker/bin/../lib/Shadower.pm
	UNKNOWN	SimpleCluster	/usr/local/genome/maker/bin/../lib/SimpleCluster.pm
	1.94	Socket	/usr/lib/perl/5.14/Socket.pm
	UNKNOWN	SpaceBase	/usr/local/genome/maker/bin/../lib/SpaceBase.pm
	2.39	Storable	/usr/local/lib/perl/5.14.2/Storable.pm
	1.07	Symbol	/usr/share/perl/5.14/Symbol.pm
	1.16	Sys::Hostname	/usr/lib/perl/5.14/Sys/Hostname.pm
	0.15	Sys::SigAction	/usr/local/share/perl/5.14.2/Sys/SigAction.pm
	3.00	Term::ANSIColor	/usr/share/perl/5.14/Term/ANSIColor.pm
	4.2	Tie::Handle	/usr/share/perl/5.14/Tie/Handle.pm
	1.04	Tie::Hash	/usr/share/perl/5.14/Tie/Hash.pm
	4.2	Tie::StdHandle	/usr/share/perl/5.14/Tie/StdHandle.pm
	1.972101	Time::HiRes	/usr/lib/perl/5.14/Time/HiRes.pm
	1.2000	Time::Local	/usr/share/perl/5.14/Time/Local.pm
	1.59	URI	/usr/share/perl5/URI.pm
	3.31	URI::Escape	/usr/share/perl5/URI/Escape.pm
	UNKNOWN	Widget	/usr/local/genome/maker/bin/../lib/Widget.pm
	UNKNOWN	Widget::RepeatMasker	/usr/local/genome/maker/bin/../lib/Widget/RepeatMasker.pm
	UNKNOWN	Widget::augustus	/usr/local/genome/maker/bin/../lib/Widget/augustus.pm
	UNKNOWN	Widget::blastn	/usr/local/genome/maker/bin/../lib/Widget/blastn.pm
	UNKNOWN	Widget::blastx	/usr/local/genome/maker/bin/../lib/Widget/blastx.pm
	UNKNOWN	Widget::exonerate	/usr/local/genome/maker/bin/../lib/Widget/exonerate.pm
	UNKNOWN	Widget::exonerate::est2genome	/usr/local/genome/maker/bin/../lib/Widget/exonerate/est2genome.pm
	UNKNOWN	Widget::exonerate::protein2genome	/usr/local/genome/maker/bin/../lib/Widget/exonerate/protein2genome.pm
	UNKNOWN	Widget::fgenesh	/usr/local/genome/maker/bin/../lib/Widget/fgenesh.pm
	UNKNOWN	Widget::formater	/usr/local/genome/maker/bin/../lib/Widget/formater.pm
	UNKNOWN	Widget::genemark	/usr/local/genome/maker/bin/../lib/Widget/genemark.pm
	UNKNOWN	Widget::snap	/usr/local/genome/maker/bin/../lib/Widget/snap.pm
	UNKNOWN	Widget::tblastx	/usr/local/genome/maker/bin/../lib/Widget/tblastx.pm
	0.13	XSLoader	/usr/share/perl/5.14/XSLoader.pm
	0.14	attributes	/usr/lib/perl/5.14/attributes.pm
	2.16	base	/usr/share/perl/5.14/base.pm
	1.04	bytes	/usr/share/perl/5.14/bytes.pm
	UNKNOWN	clean	/usr/local/genome/maker/bin/../lib/clean.pm
	UNKNOWN	cluster	/usr/local/genome/maker/bin/../lib/cluster.pm
	UNKNOWN	compare	/usr/local/genome/maker/bin/../lib/compare.pm
	1.21	constant	/usr/share/perl/5.14/constant.pm
	UNKNOWN	ds_utility	/usr/local/genome/maker/bin/../lib/ds_utility.pm
	UNKNOWN	exonerate::splice_info	/usr/local/genome/maker/bin/../lib/exonerate/splice_info.pm
	1.20	feature	/usr/share/perl/5.14/feature.pm
	0.34	forks	/usr/local/lib/perl/5.14.2/forks.pm
	2.08001	forks::Devel::Symdump	/usr/local/lib/perl/5.14.2/forks/Devel/Symdump.pm
	0.34	forks::shared	/usr/local/lib/perl/5.14.2/forks/shared.pm
	0.34	forks::signals	/usr/local/lib/perl/5.14.2/forks/signals.pm
	1.00	integer	/usr/share/perl/5.14/integer.pm
	0.63	lib	/usr/lib/perl/5.14/lib.pm
	1.00	locale	/usr/share/perl/5.14/locale.pm
	UNKNOWN	maker::auto_annotator	/usr/local/genome/maker/bin/../lib/maker/auto_annotator.pm
	UNKNOWN	maker::join	/usr/local/genome/maker/bin/../lib/maker/join.pm
	UNKNOWN	maker::quality_index	/usr/local/genome/maker/bin/../lib/maker/quality_index.pm
	UNKNOWN	maker::sens_spec	/usr/local/genome/maker/bin/../lib/maker/sens_spec.pm
	1.13	overload	/usr/share/perl/5.14/overload.pm
	UNKNOWN	polisher	/usr/local/genome/maker/bin/../lib/polisher.pm
	UNKNOWN	polisher::exonerate	/usr/local/genome/maker/bin/../lib/polisher/exonerate.pm
	UNKNOWN	polisher::exonerate::est	/usr/local/genome/maker/bin/../lib/polisher/exonerate/est.pm
	UNKNOWN	polisher::exonerate::protein	/usr/local/genome/maker/bin/../lib/polisher/exonerate/protein.pm
	UNKNOWN	repeat_mask_seq	/usr/local/genome/maker/bin/../lib/repeat_mask_seq.pm
	0.1	runlog	/usr/local/genome/maker/bin/../lib/runlog.pm
	UNKNOWN	shadow_AED	/usr/local/genome/maker/bin/../lib/shadow_AED.pm
	1.05	sigtrap	/usr/share/perl/5.14/sigtrap.pm
	1.04	strict	/usr/share/perl/5.14/strict.pm
	1.77	threads	/usr/local/lib/perl/5.14.2/forks.pm
	1.33	threads::shared	/usr/local/lib/perl/5.14.2/forks/shared.pm
	1.02	vars	/usr/share/perl/5.14/vars.pm
	1.12	warnings	/usr/share/perl/5.14/warnings.pm
	1.02	warnings::register	/usr/share/perl/5.14/warnings/register.pm
STATUS: Parsing control files...
Calling GI::load_control_files at /usr/local/genome/maker/bin/maker line 346.
WARNING: RepBase is not installed for RepeatMasker. This limits
RepeatMasker's functionality and makes the model_org option in the
control files virtually meaningless. MAKER will now reconfigure
for simple repeat masking only.
Calling GI::new_instance_temp at /usr/local/genome/maker/bin/maker line 357.
Calling GI::mount_check at /usr/local/genome/maker/bin/maker line 359.
Calling GI::set_global_temp at /usr/local/genome/maker/bin/maker line 377, <DF> line 2.
STATUS: Processing and indexing input FASTA files...
Calling GI::s_abs_path at /usr/local/genome/maker/bin/maker line 412, <DF> line 2.
Calling GI::s_abs_path at /usr/local/genome/maker/bin/maker line 412, <DF> line 2.
Calling GI::s_abs_path at /usr/local/genome/maker/bin/maker line 412, <DF> line 2.
Calling GI::s_abs_path at /usr/local/genome/maker/bin/maker line 412, <DF> line 2.
Calling GI::s_abs_path at /usr/local/genome/maker/bin/maker line 412, <DF> line 2.
Calling List::Util::shuffle at /usr/local/genome/maker/bin/maker line 422, <DF> line 2.
Calling GI::split_db at /usr/local/genome/maker/bin/maker line 429, <DF> line 2.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/maker line 430.
Calling File::Path::rmtree at /usr/local/genome/maker/bin/maker line 430.
Calling Iterator::Any::new at /usr/local/genome/maker/bin/maker line 430.
Calling Iterator::Any::nextDef at /usr/local/genome/maker/bin/maker line 430.
Calling Iterator::Any::new at /usr/local/genome/maker/bin/maker line 430.
Calling mkdir at /usr/local/genome/maker/bin/maker line 430.
Calling GI::build_fasta_index at /usr/local/genome/maker/bin/maker line 431.
Calling FastaDB::new at /usr/local/genome/maker/bin/maker line 432.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Can't locate package GDBM_File for @AnyDBM_File::ISA at /usr/lib/perl/5.14/DB_File.pm line 287.
Can't locate package NDBM_File for @AnyDBM_File::ISA at /usr/lib/perl/5.14/DB_File.pm line 287.
Can't locate package SDBM_File for @AnyDBM_File::ISA at /usr/lib/perl/5.14/DB_File.pm line 287.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling GI::split_db at /usr/local/genome/maker/bin/maker line 429.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/maker line 430.
Calling File::NFSLock::unlock at /usr/local/genome/maker/bin/maker line 430.
Calling GI::build_fasta_index at /usr/local/genome/maker/bin/maker line 431.
Calling FastaDB::new at /usr/local/genome/maker/bin/maker line 432.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling GI::split_db at /usr/local/genome/maker/bin/maker line 429.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/maker line 430.
Calling File::NFSLock::unlock at /usr/local/genome/maker/bin/maker line 430.
Calling GI::build_fasta_index at /usr/local/genome/maker/bin/maker line 431.
Calling FastaDB::new at /usr/local/genome/maker/bin/maker line 432.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling GI::split_db at /usr/local/genome/maker/bin/maker line 429.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/maker line 430.
Calling File::Path::rmtree at /usr/local/genome/maker/bin/maker line 430.
Calling Iterator::Any::new at /usr/local/genome/maker/bin/maker line 430.
Calling Iterator::Any::nextDef at /usr/local/genome/maker/bin/maker line 430.
Calling Iterator::Any::new at /usr/local/genome/maker/bin/maker line 430.
Calling mkdir at /usr/local/genome/maker/bin/maker line 430.
Calling GI::build_fasta_index at /usr/local/genome/maker/bin/maker line 431.
Calling FastaDB::new at /usr/local/genome/maker/bin/maker line 432.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling GI::create_blastdb at /usr/local/genome/maker/bin/maker line 467.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/maker line 468.
Calling File::NFSLock::unlock at /usr/local/genome/maker/bin/maker line 468.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/maker line 468.
Calling File::NFSLock::unlock at /usr/local/genome/maker/bin/maker line 468.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/maker line 468.
Calling File::Path::rmtree at /usr/local/genome/maker/bin/maker line 468.
Calling Iterator::Any::new at /usr/local/genome/maker/bin/maker line 468.
Calling Iterator::Any::nextDef at /usr/local/genome/maker/bin/maker line 468.
Calling Iterator::Any::new at /usr/local/genome/maker/bin/maker line 468.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/maker line 468.
Calling File::Path::rmtree at /usr/local/genome/maker/bin/maker line 468.
Calling Iterator::Any::new at /usr/local/genome/maker/bin/maker line 468.
Calling Iterator::Any::nextDef at /usr/local/genome/maker/bin/maker line 468.
Calling Iterator::Any::new at /usr/local/genome/maker/bin/maker line 468.
Calling GI::build_fasta_index at /usr/local/genome/maker/bin/maker line 521.
Calling FastaDB::new at /usr/local/genome/maker/bin/maker line 522.
Calling File::NFSLock::new at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling File::NFSLock::maintain at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling out to BioPerl Bio::DB::Fasta::new at /usr/local/genome/maker/bin/../lib/Error.pm line 339.
Calling FastaDB::makeid from BioPerl Bio::DB::Fasta hook at /usr/local/share/perl/5.14.2/Bio/DB/Fasta.pm line 764.
Calling out to BioPerl get_PrimarySeq_stream at /usr/local/genome/maker/bin/../lib/GI.pm line 1694.
Calling FastaDB::add_to_global_index at /usr/local/genome/maker/bin/maker line 523.
STATUS: Setting up database for any GFF3 input...
Calling GFFDB::new at /usr/local/genome/maker/bin/maker line 529.
Calling GFFDB::next_build at /usr/local/genome/maker/bin/maker line 531.
Calling ds_utility::new at /usr/local/genome/maker/bin/maker line 535.
A data structure will be created for you at:
/home/rosema1/Projects/maker/dpp_contig.maker.output/dpp_contig_datastore

To access files for individual sequences use the datastore index:
/home/rosema1/Projects/maker/dpp_contig.maker.output/dpp_contig_master_datastore_index.log

Calling Datastore::MD5::new at /usr/local/genome/maker/bin/maker line 536.
Calling Iterator::Fasta::new at /usr/local/genome/maker/bin/maker line 539.
Calling Iterator::Fasta::skip_file at /usr/local/genome/maker/bin/maker line 541.
Calling Iterator::Fasta::step at /usr/local/genome/maker/bin/maker line 543.
STATUS: Now running MAKER...
Calling Datastore::MD5::mkdir at /usr/local/genome/maker/bin/../lib/Process/MpiChunk.pm line 428.
Calling Datastore::MD5::id_to_dir at /usr/local/genome/maker/bin/../lib/Process/MpiChunk.pm line 428.
Calling Datastore::MD5::mkdir at /usr/local/genome/maker/bin/../lib/Process/MpiChunk.pm line 428.
Calling uri_escape at /usr/local/genome/maker/bin/../lib/Process/MpiChunk.pm line 428.
Calling File::Path::mkpath at /usr/local/genome/maker/bin/../lib/Process/MpiChunk.pm line 428.



--Next Contig--

Processing run.log file...
#---------------------------------------------------------------------
The contig has already been processed!!
Maker will now skip to the next contig.
Run maker with the -f flag to force Maker to recompute all contig data.
SeqID: contig-dpp-500-500
Length: 32156
#---------------------------------------------------------------------




Maker is now finished!!!

-------------- next part --------------
#-----BLAST and Exonerate Statistics Thresholds
blast_type=ncbi+ #set to 'ncbi+', 'ncbi' or 'wublast'

pcov_blastn=0.8 #Blastn Percent Coverage Threhold EST-Genome Alignments
pid_blastn=0.85 #Blastn Percent Identity Threshold EST-Genome Aligments
eval_blastn=1e-10 #Blastn eval cutoff
bit_blastn=40 #Blastn bit cutoff
depth_blastn=0 #Blastn depth cutoff (0 to disable cutoff)

pcov_blastx=0.5 #Blastx Percent Coverage Threhold Protein-Genome Alignments
pid_blastx=0.4 #Blastx Percent Identity Threshold Protein-Genome Aligments
eval_blastx=1e-06 #Blastx eval cutoff
bit_blastx=30 #Blastx bit cutoff
depth_blastx=0 #Blastx depth cutoff (0 to disable cutoff)

pcov_tblastx=0.8 #tBlastx Percent Coverage Threhold alt-EST-Genome Alignments
pid_tblastx=0.85 #tBlastx Percent Identity Threshold alt-EST-Genome Aligments
eval_tblastx=1e-10 #tBlastx eval cutoff
bit_tblastx=40 #tBlastx bit cutoff
depth_tblastx=0 #tBlastx depth cutoff (0 to disable cutoff)

pcov_rm_blastx=0.5 #Blastx Percent Coverage Threhold For Transposable Element Masking
pid_rm_blastx=0.4 #Blastx Percent Identity Threshold For Transposbale Element Masking
eval_rm_blastx=1e-06 #Blastx eval cutoff for transposable element masking
bit_rm_blastx=30 #Blastx bit cutoff for transposable element masking

ep_score_limit=20 #Exonerate protein percent of maximal score threshold
en_score_limit=20 #Exonerate nucleotide percent of maximal score threshold
-------------- next part --------------
#-----Location of Executables Used by MAKER/EVALUATOR
makeblastdb=/usr/local/genome/rmblast/bin/makeblastdb #location of NCBI+ makeblastdb executable
blastn=/usr/local/genome/rmblast/bin/blastn #location of NCBI+ blastn executable
blastx=/usr/local/genome/rmblast/bin/blastx #location of NCBI+ blastx executable
tblastx=/usr/local/genome/rmblast/bin/tblastx #location of NCBI+ tblastx executable
formatdb=/usr/bin/formatdb #location of NCBI formatdb executable
blastall=/usr/bin/blastall #location of NCBI blastall executable
xdformat= #location of WUBLAST xdformat executable
blasta= #location of WUBLAST blasta executable
RepeatMasker=/usr/local/genome/RepeatMasker/RepeatMasker #location of RepeatMasker executable
exonerate=/usr/local/genome/exonerate-2.2.0-x86_64/bin/exonerate #location of exonerate executable

#-----Ab-initio Gene Prediction Algorithms
snap=/usr/local/genome/snap/snap #location of snap executable
gmhmme3= #location of eukaryotic genemark executable
gmhmmp= #location of prokaryotic genemark executable
augustus= #location of augustus executable
fgenesh= #location of fgenesh executable

#-----Other Algorithms
probuild= #location of probuild executable (required for genemark)
-------------- next part --------------
#-----Genome (these are always required)
genome=dpp_contig.fasta #genome sequence (fasta file or fasta embeded in GFF3 file)
organism_type=eukaryotic #eukaryotic or prokaryotic. Default is eukaryotic

#-----Re-annotation Using MAKER Derived GFF3
maker_gff= #MAKER derived GFF3 file
est_pass=0 #use ESTs in maker_gff: 1 = yes, 0 = no
altest_pass=0 #use alternate organism ESTs in maker_gff: 1 = yes, 0 = no
protein_pass=0 #use protein alignments in maker_gff: 1 = yes, 0 = no
rm_pass=0 #use repeats in maker_gff: 1 = yes, 0 = no
model_pass=0 #use gene models in maker_gff: 1 = yes, 0 = no
pred_pass=0 #use ab-initio predictions in maker_gff: 1 = yes, 0 = no
other_pass=0 #passthrough anyything else in maker_gff: 1 = yes, 0 = no

#-----EST Evidence (for best results provide a file for at least one)
est=dpp_est.fasta #set of ESTs or assembled mRNA-seq in fasta format
altest= #EST/cDNA sequence file in fasta format from an alternate organism
est_gff= #aligned ESTs or mRNA-seq from an external GFF3 file
altest_gff= #aligned ESTs from a closly relate species in GFF3 format

#-----Protein Homology Evidence (for best results provide a file for at least one)
protein=dpp_protein.fasta  #protein sequence file in fasta format (i.e. from mutiple oransisms)
protein_gff=  #aligned protein homology evidence from an external GFF3 file

#-----Repeat Masking (leave values blank to skip repeat masking)
model_org=all #select a model organism for RepBase masking in RepeatMasker
rmlib= #provide an organism specific repeat library in fasta format for RepeatMasker
repeat_protein=/usr/local/genome/maker/data/te_proteins.fasta #provide a fasta file of transposable element proteins for RepeatRunner
rm_gff= #pre-identified repeat elements from an external GFF3 file
prok_rm=0 #forces MAKER to repeatmask prokaryotes (no reason to change this), 1 = yes, 0 = no
softmask=1 #use soft-masking rather than hard-masking in BLAST (i.e. seg and dust filtering)

#-----Gene Prediction
snaphmm= #SNAP HMM file
gmhmm= #GeneMark HMM file
augustus_species= #Augustus gene prediction species model
fgenesh_par_file= #FGENESH parameter file
pred_gff= #ab-initio predictions from an external GFF3 file
model_gff= #annotated gene models from an external GFF3 file (annotation pass-through)
est2genome=1 #infer gene predictions directly from ESTs, 1 = yes, 0 = no
protein2genome=0 #infer predictions from protein homology, 1 = yes, 0 = no
unmask=0 #also run ab-initio prediction programs on unmasked sequence, 1 = yes, 0 = no

#-----Other Annotation Feature Types (features MAKER doesn't recognize)
other_gff= #extra features to pass-through to final MAKER generated GFF3 file

#-----External Application Behavior Options
alt_peptide=C #amino acid used to replace non-standard amino acids in BLAST databases
cpus=1 #max number of cpus to use in BLAST and RepeatMasker (not for MPI, leave 1 when using MPI)

#-----MAKER Behavior Options
max_dna_len=100000 #length for dividing up contigs into chunks (increases/decreases memory usage)
min_contig=1 #skip genome contigs below this length (under 10kb are often useless)

pred_flank=200 #flank for extending evidence clusters sent to gene predictors
pred_stats=0 #report AED and QI statistics for all predictions as well as models
AED_threshold=1 #Maximum Annotation Edit Distance allowed (bound by 0 and 1)
min_protein=0 #require at least this many amino acids in predicted proteins
alt_splice=0 #Take extra steps to try and find alternative splicing, 1 = yes, 0 = no
always_complete=0 #extra steps to force start and stop codons, 1 = yes, 0 = no
map_forward=0 #map names and attributes forward from old GFF3 genes, 1 = yes, 0 = no
keep_preds=0 #Concordance threshold to add unsupported gene prediction (bound by 0 and 1)

split_hit=10000 #length for the splitting of hits (expected max intron size for evidence alignments)
single_exon=0 #consider single exon EST evidence when generating annotations, 1 = yes, 0 = no
single_length=250 #min length required for single exon ESTs if 'single_exon is enabled'
correct_est_fusion=0 #limits use of ESTs in annotation to avoid fusion genes

tries=2 #number of times to try a contig if there is a failure for some reason
clean_try=0 #remove all data from previous run before retrying, 1 = yes, 0 = no
clean_up=0 #removes theVoid directory with individual analysis files, 1 = yes, 0 = no
TMP= #specify a directory other than the system default temporary directory for temporary files

From carsonhh at gmail.com  Sun Dec  9 12:16:53 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Sun, 09 Dec 2012 14:16:53 -0500
Subject: [maker-devel] FW: maker error
In-Reply-To: <F0C46C4D691E2047A95E0293D5660AD00BC1359B99@USETCMSXMB03.NAFTA.SYNGENTA.ORG>
Message-ID: <CCEA4C91.16F67%carsonhh@gmail.com>

The error is most likely one related to Berkley DB on some systems that
has been fixed in the devel version of maker.  I've updated the maker
download at yandell-lab.org to version 2.27, so it also has the fix
integrated.

Thanks,
Carson




On 12-12-08 11:06 AM, "mark.rose at syngenta.com" <mark.rose at syngenta.com>
wrote:

>Hi
>
>I just installed maker and am trying to run it with the sample data but
>get the following error:
>
>$ maker
>STATUS: Parsing control files...
>WARNING: RepBase is not installed for RepeatMasker. This limits
>RepeatMasker's functionality and makes the model_org option in the
>control files virtually meaningless. MAKER will now reconfigure for
>simple repeat masking only.
>STATUS: Processing and indexing input FASTA files...
>Segmentation fault (core dumped)
>
>I've attached the config files and the output of $maker --debug
>
>Thanks for your help
>
>Mark
>
>
>
>
>This message may contain confidential information. If you are not the
>designated recipient, please notify the sender immediately, and delete
>the original and any copies. Any use of the message by you is prohibited.
>_______________________________________________
>maker-devel mailing list
>maker-devel at box290.bluehost.com
>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org





From carsonhh at gmail.com  Sun Dec  9 12:33:22 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Sun, 09 Dec 2012 14:33:22 -0500
Subject: [maker-devel] MAKER download updated to 2.27
Message-ID: <CCEA51B2.16F91%carsonhh@gmail.com>

MAKER has now been updated to version 2.27-beta on the yandell-lab.org
download site


Changes
* Fix parsing failure that rarely happen in some exonerate results
* Faster performance on NFS
* Workaround for filesystems that don't support hard links, and new command
line options to completely turn off file locking during runs
* Support for more indexing types beyond Berkley DB
* Fix for seg fault during indexing on some systems
* Better support for more MPI flavors (OpenMPi and MVAPICH2)
* Non-standard nucleotides now allowed although not recommended because they
may cause compatibility issues when you try and use MAKER results with other
programs that don't support those nucleotides.
* Other incremental bug fixes and performance enhancements.

Thanks,
Carson




-------------- next part --------------
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From parulk at caltech.edu  Mon Dec 10 20:28:24 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Mon, 10 Dec 2012 19:28:24 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCE7FF16.16F0A%carsonhh@gmail.com>
References: <CCE7FF16.16F0A%carsonhh@gmail.com>
Message-ID: <3576.131.215.15.234.1355196504.squirrel@webmail.caltech.edu>

Dear Carson, Thanks a lot for detailed explanation and all the help with
running and understanding maker2.


> Yes.  Lamprey is not a good match for sea urchin.  When training Augusuts
> you can sometimes use other genomes as starting points and let Augustus
> then modify that species to match the models you provided, which can be
> better than de novo training under certain circumstances. But given sea
> urchin's evolutionary distance from all the other species bundled with
> augustus, its probably not a good starting point.  So protein2genome
> derived models and cegma based training are probably your best options.
>
> --Carson
>
>
> On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>
>>Sorry for not checking this before, just to answer my own question I just
>>found after reading augustus documentation that autoAugTrain.pl should
>>work for generating training dataset for Augustus from using the
>>gene-model hints from first pass run of maker and using
>>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script to
>>generate training.gb
>>
>>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>>
>>I believe should work better than using lamprey to train augustus.
>>
>>Thanks and regards,
>>Parul Kudtarkar
>>
>>> Dear Carson,
>>>
>>> Thanks for detailed explanation and help. Now we know the exact
>>>parameters
>>> that should help us with generating good gene-model.
>>>
>>> The genome for which we are working on gene predictions is
>>> Echinoderm(sea-urchin). lamprey was the closest organism for training
>>> augustus that I could find. A quick question for training augustus,
>>>there
>>> is augustus_species option how would you go from training data
>>> generated
>>> by zff2augustus_gbk.pl > train.gb as specified here
>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>>> generating the species folder that can be specified to augustus_species
>>> option.
>>>
>>> The average expected gene-length in our case is ~15kb.
>>> We also have a good repeat library for our genome.
>>>
>>> Thanks and regards,
>>> Parul Kudtarkar
>>>
>>>> For step 2 and 3, use lamprey rather than human in augustus.  For some
>>>> reason the current version of augustus doesn't diplay it as an option
>>>> for
>>>> the species help menu (so I didn't see it), but it's there in
>>>> ?/augustus/config/species/lamprey
>>>>
>>>> For any additional training, make copies into
>>>> ?/augustus/config/species/lamprey2 and
>>>> ?/augustus/config/species/lamprey3
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>
>>>> From:  Carson Holt <carsonhh at gmail.com>
>>>> Date:  Friday, 7 December, 2012 10:22 AM
>>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>>> "maker-devel at yandell-lab.org"
>>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>>> Subject:  Re: [maker-devel] AED score
>>>>
>>>> Just to add to Daniels comments.
>>>>
>>>> Things to change in step 1:
>>>>> protein= <just try and add more protein evidence in general>
>>>>> est2genome=0
>>>>> protein2genome=1
>>>>> split_hit=20000
>>>>> min_contig=50000
>>>>
>>>> Reasoning:
>>>>> Your ESTs are very short especially if this is a lamprey species
>>>>> which
>>>>> have
>>>>> very long introns and really short exons.  In lamprey (i.e.
>>>>> Petromyzon
>>>>> marinus), genes tend to be very long (remember gene lengths include
>>>>> introns
>>>>> and UTR and is not just the size of the coding sequence), so contigs
>>>>> shorter
>>>>> than 50kb are useless for training as you are unlikely to get nice
>>>>> complete
>>>>> gene models on those.  Also lampreys have very long introns, so you
>>>>> have
>>>>> to
>>>>> allow for bigger introns in alignments (split_hit parameter).
>>>>> Finally
>>>>> add as
>>>>> much protein evidence from as many sources as possible.  Your maker
>>>>> training
>>>>> run will take a long time as proteins take forever to align, but
>>>>> because
>>>>> of
>>>>> the evolutionary distance of lamprey from everything else and the
>>>>>short
>>>>> exon
>>>>> structure of its genome, very little aligns directly to its genome
>>>>>from
>>>>> other
>>>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>>>> species
>>>>> because of what you said about the  augustus species file you are
>>>>> using.
>>>>> Really the only thing closely related to lampreys unfortunately are
>>>>> other
>>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>>>>> lamprey
>>>>> (while they branch closely together on the tree of life, there are
>>>>> too
>>>>> many
>>>>> years since the last common ancestor).  So while they may have
>>>>> similar
>>>>> issues
>>>>> related to annotation (long introns and short exons etc.) they will
>>>>>not
>>>>> really
>>>>> match that well for the gene predictor or even protein alignments.
>>>>
>>>> Additional note:
>>>>> I have training files for the lamprey species Petromyzon marinus for
>>>>> both
>>>>> Augustus and SNAP that I could share with you in a few week, when the
>>>>> genome
>>>>> publication is is released.  But before that happens, new gene models
>>>>> will be
>>>>> available  through the UCSC browser (hopefully within a couple of
>>>>> weeks), and
>>>>> gene models are already available through ENSEMBL.  Get those protein
>>>>> files
>>>>> for training, it may be a big help for you.  If you want early access
>>>>> to
>>>>> the
>>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>>request
>>>>> it
>>>>> from Weiming Li at Michigan State University (the head of that genome
>>>>> project).
>>>>>
>>>>
>>>>
>>>> Things to change in step 2:
>>>>> Optimally you would be doing de novo training using mRNAseq results,
>>>>> but
>>>>> with
>>>>> on;ly sparse protein alignments and such a fragmented assembly, you
>>>>>are
>>>>> probably better off just trying to adapt the human HMM files.  They
>>>>> won't
>>>>> match that well, but you probably won't have the evidence for De Novo
>>>>> training.  First make a copy of the augustus human species directory
>>>>> and
>>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>>>> retraining
>>>>> augustus using your new models.  You will have to edit multiple files
>>>>> in
>>>>> the
>>>>> directory after you copy it so that they no longer say human or homo
>>>>> sapiens
>>>>> internally or in the file name.  Use maker2zff to generate the
>>>>>filtered
>>>>> ZFF
>>>>> file for training SNAP, but don't train SNAP.  Rather use the
>>>>> training
>>>>> file to
>>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>>
>>>>> MAKE a backup of the step 1 maker output directory and run step 2 in
>>>>> the
>>>>> old
>>>>> step 1 directory (this allows you to change the parameters and reuse
>>>>> files
>>>>> form step 1 so you don't have to recalculate all the protein and EST
>>>>> alignments).  So control files for step 2 are identical to step 1
>>>>> except
>>>>> for
>>>>> these parameters.
>>>>>
>>>>> protein2genome=0
>>>>> augustus_species=lamprey
>>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>>
>>>>> Don't both training SNAP here as you probably won't have enough data
>>>>> and
>>>>> you
>>>>> assembly is too fragmented for it to work well, so just stick to
>>>>> augustus.
>>>>> Try SNAP if you want just to see how well it works.  Manually open up
>>>>> the
>>>>> largest contigs in a viewer to look at the models produced from the
>>>>> MAKER run
>>>>> to see if they look reasonable (this will also help you decide
>>>>> whether
>>>>> to keep
>>>>> SNAP).
>>>>>
>>>>
>>>> Things to change in step 3:
>>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>>>>> make
>>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>>> ?/augustus/config/species/lamprey2 (editing all the files and names
>>>>> as
>>>>> you did
>>>>> in step 2). This way you don't loose that training data if you decide
>>>>> to
>>>>> step
>>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>>
>>>>> augustus_species=lamprey2
>>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>>
>>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>>> (This
>>>>> is
>>>>> for file reuse, so the step will run fast).  This must be the exact
>>>>> same
>>>>> step
>>>>> directory as step 2 for the reuse trick to work.
>>>>>
>>>>> Manually review the models and if you are satisfied move to step 4.
>>>>> Also note
>>>>> that most parameters including the protein, EST, and repeats should
>>>>>not
>>>>> change
>>>>> from step1-step3, and should not be removed for step 4 either, you
>>>>> can
>>>>> add
>>>>> more evidence, but don't remove evidence (like the repeats).
>>>>>
>>>>>
>>>> Things to change in step 4:
>>>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>>>> step
>>>>> 3
>>>>> directory to get the smaller contigs annotated.  This should be your
>>>>> final
>>>>> step, although you can try altering other parameters or adding more
>>>>> evidence
>>>>> sources here etc.
>>>>>
>>>>>
>>>> For other things to keep in mind, you should consider taking extra
>>>> time
>>>> to
>>>> build a comprehensive library of repeats for your species, I know that
>>>> Petromyzon marinus was virtually unannotatable until we had a very
>>>> deep
>>>> repeat library built for it.  Any repeat library should be used in all
>>>> steps.  Also for lamprey, you will expect between 20,000-30,000 genes
>>>> both
>>>> because of your assemblies fragmentation and because of some ancestral
>>>> genome duplication.  Also be aware that lampreys appear to undergo
>>>> programmed genome loss in somatic tissues, so any gene count you get
>>>> is
>>>> only
>>>> going to represent a maximum of 75-80% of all genes unless the
>>>> assembly
>>>> is
>>>> derived from germline tissue.
>>>>
>>>> Thanks,
>>>> Carson
>>>>
>>>>
>>>>>
>>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>
>>>>> Hi Parul,
>>>>>
>>>>> In step one, if protein2genome isn't turned on, then the protein
>>>>> alignments
>>>>> wont be used to generate gene models. Carson said before to use
>>>>> protein2genome
>>>>> to generate gene models for your trainings set, but you should know
>>>>> that
>>>>> those
>>>>> data aren't being used right now.
>>>>>
>>>>> In step 2, you can include the est and protein evidence that you used
>>>>> in
>>>>> step
>>>>> one, and the ab-initio predictors will takes those data as hints to
>>>>> guide
>>>>> their predictions. Also, are you reannotating human here? I'm just
>>>>> wondering
>>>>> why the snap file is called Pult, but the augustus species model is
>>>>> human.
>>>>> Also, I think you should include the same masking files from step 1,
>>>>> otherwise
>>>>> the ab-initio predictors will be predicting on the unmasked sequence
>>>>> which
>>>>> will give you many spurious predictions.
>>>>>
>>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>>control
>>>>> file
>>>>> you sent for step 3 will just pass-through all of the data from
>>>>>before.
>>>>>
>>>>> In step 4, I think what you'll get is pretty close to what you
>>>>> already
>>>>> had in
>>>>> step 3. The gene models from step 3 are already based on the est and
>>>>> protein
>>>>> data from step 1, so without giving any different evidence or
>>>>>ab-initio
>>>>> predictors, I think that you will just get the same gene models that
>>>>> you
>>>>> got
>>>>> from step 3. Those gene models are what you should be using to train
>>>>> snap.
>>>>> Also, is this the same genome as in the other steps? The genome file
>>>>> here is
>>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>>
>>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>>create
>>>>> models. If you don't give any evidence (EST or protein) maker will
>>>>> not
>>>>> annotate any gene models. You have also changed the augustus species
>>>>> model in
>>>>> this step, but I don't know what you've gained by going from one
>>>>> species
>>>>> to
>>>>> another. You should be training augustus with the gene models and
>>>>> then
>>>>> creating a new species model in augustus. As I understand it, the
>>>>> filter
>>>>> only
>>>>> operates on gene models, not ab-initio predictions or alignments, so
>>>>>it
>>>>> probably isn't doing anything the way you have it set.
>>>>>
>>>>> Step 6. I think step 5 and 6 should be combined. I don't know what
>>>>> you
>>>>> mean by
>>>>> boot-strapping here too.
>>>>>
>>>>> Hopefully that clears up some of the confusion with how maker works.
>>>>> Carson
>>>>> will probably have a lot of suggestions too.
>>>>>
>>>>> Thanks,
>>>>> Daniel
>>>>>
>>>>> Daniel Ence
>>>>> Graduate Student
>>>>> Eccles Institute of Human Genetics
>>>>> University of Utah
>>>>> 15 North 2030 East, Room 2100
>>>>> Salt Lake City, UT 84112-5330
>>>>> ________________________________________
>>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>>> To: carsonhh at gmail.com
>>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>>> Subject: Re: [maker-devel] AED score
>>>>>
>>>>> Hi Carson,
>>>>>
>>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>>> 30,000
>>>>> genes.
>>>>> Here are the step
>>>>> Step1. EST and proteins are used to predict gene-models. the
>>>>> resulting
>>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>>> turned
>>>>> ON
>>>>> Step2. Augustus and SNAP is used to predict genes.
>>>>> Step3. The results are re-annoated(boot-strap)
>>>>> Step4. EST and proteins are used to predict gene-models. The gff file
>>>>> from
>>>>> step3. is used as model_gff. The resulting file is used as training
>>>>> data-set for SNAP in step2
>>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to
>>>>>0.5
>>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5
>>>>> and
>>>>> contig_size to 10kb
>>>>>
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>
>>>>> I have attached the configuration file for each step.
>>>>>>  Your output has no genes.  They've all been filtered out.  The gene
>>>>> predictions are left for reference purposes, but there are no gene
>>>>> models
>>>>>>  in the file.  You need to look at the type columns in the GFF3 file
>>>>>> -->
>>>>> match/match_part features are evidence and reference data but not
>>>>> models.
>>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>>>>> just
>>>>> want gene models in your file you can use the gff3_merge script with
>>>>> the
>>>>> -g option, and it will only print out the gene models.
>>>>>>  I think you may be misinterpreting what is happening at different
>>>>>> steps,
>>>>> as well as how to read the result files.  Could you give me a
>>>>> detailed
>>>>> explanation of what you expect to get back together with your control
>>>>> files and I can walk you through the configuration, and indicate what
>>>>> to
>>>>> expect.  Also what was the report like from CEGMA. Could you include
>>>>> the
>>>>> report file that shows how complete your genome is and how fragmented
>>>>> it
>>>>> is?
>>>>>>  Thanks,
>>>>>>  Carson
>>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>> Dear Carson,
>>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>>> Though for previous step(ab-intio gene predictions keep_preds was
>>>>>>>set
>>>>>>> to
>>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>>> Scaffold1_out.gff.
>>>>>>> Please advice.
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>>  You should always get all predictions, but should only get models
>>>>> (match/match_part) with AED scores less than 0.5.  You should never
>>>>>get
>>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>>>> keep_preds set.
>>>>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>>>>> your
>>>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>>> case,
>>>>>>>>  just set it to 0.  If the second one in the case, could you send
>>>>>>>>me
>>>>> example GFF3?
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>>> Dear Carson,
>>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>>> short
>>>>>>>>>  ESTs.
>>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>>> prediction(used as training dataset)and abinitio
>>>>>>>>> gene-prediction).
>>>>> Here
>>>>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>>>>  however
>>>>>>>>>  I
>>>>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>>>>  resulting
>>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>>>>  initial
>>>>>>>>> gff3 file.
>>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>>>  eukaryotic
>>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>>>> file
>>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 =
>>>>>>>>> yes,
>>>>>>>>> 0
>>>>>>>>> =
>>>>> no
>>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0
>>>>>>>>> =
>>>>>>>>> no
>>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0 =
>>>>>>>>>  no
>>>>>>>>> #-----MAKER Behavior Options
>>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed
>>>>>>>>> (bound
>>>>>>>>> by
>>>>> 0
>>>>>>>>> and 1)
>>>>>>>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to be
>>>>>>>>>> partial
>>>>>>>>>> at
>>>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>>>> those
>>>>> by
>>>>>>>>>>  using maker's est_gff option to pass in results from cufflinks
>>>>>>>>>>or
>>>>>>>>>> trinity.
>>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb in
>>>>> size,
>>>>>>>>>> just
>>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>>> maker_opts.ctl file.
>>>>>>>>>>  Thanks,
>>>>>>>>>>  Carson
>>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>>with
>>>>> N50
>>>>>>>>>>>  of
>>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>>> reason
>>>>>>>>>>>  when
>>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>>> predicted
>>>>> despite the model_gff file has few genes with scores less than 0.75?
>>>>> Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>>> contig.
>>>>>>>>>>> First
>>>>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>>>>> also
>>>>>>>>>>> have
>>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>>> getting
>>>>> many
>>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>>> models
>>>>> that
>>>>>>>>>>> are
>>>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>>>> piece
>>>>>>>>>>> of
>>>>>>>>>>> a
>>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>>reason
>>>>>>>>>>>  unless
>>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>>>>  protein
>>>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>>>> need
>>>>> to
>>>>>>>>>>> add
>>>>>>>>>>>  more proteins from a couple of related species, and you might
>>>>> consider
>>>>>>>>>>> using protein2genome rather than est2genome as a predictor if
>>>>>>>>>>>you
>>>>> are
>>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>>> produced
>>>>> models
>>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>>with
>>>>> the
>>>>>>>>>>> AED_threshold with such limited protein support does create an
>>>>> artificial
>>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>>  How many contigs do you have in total and what is the N50
>>>>>>>>>>> value
>>>>> for
>>>>>>>>>>> the
>>>>>>>>>>> assembly? If you have a large number of very short contigs, you
>>>>>>>>>>> will
>>>>>>>>>>>  get
>>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>>> contigs
>>>>>>>>>>>  and
>>>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>>>> just
>>>>> assembled in a slightly different way (so you can get bits and
>>>>> pieces
>>>>>>>>>>>  of
>>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>>  confounding
>>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>>> would
>>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>>  completeness
>>>>>>>>>>> as
>>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>>> statistics
>>>>>>>>>>> produced
>>>>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>>>>> those
>>>>>>>>>>>  that
>>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend to
>>>>>>>>>>> be
>>>>> shorter
>>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>>CEGMA
>>>>> gives
>>>>>>>>>>>  a
>>>>>>>>>>> high partial percentage and a low complete percentage, then
>>>>>>>>>>> this
>>>>>>>>>>>  pattern
>>>>>>>>>>> can be expected to be even more exaggerated for other genes in
>>>>>>>>>>> the
>>>>> genome.
>>>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>>>> well
>>>>> then
>>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>>genomes
>>>>> end
>>>>>>>>>>>  up
>>>>>>>>>>> having extremely fragmented assemblies (on the order of 100,000
>>>>> contigs),
>>>>>>>>>>>  and if they are distantly related to other annotated species
>>>>>>>>>>>few
>>>>>>>>>>> proteins
>>>>>>>>>>>  may align to the contigs because the introns in the alignments
>>>>> tend
>>>>>>>>>>>  to
>>>>>>>>>>> be
>>>>>>>>>>>  so long and exons so short that it pushes down the
>>>>>>>>>>> significance
>>>>> scores
>>>>>>>>>>> too
>>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if
>>>>>>>>>>> not
>>>>> only
>>>>>>>>>>>  way
>>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>>  Thanks,
>>>>>>>>>>>  Carson
>>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>score.
>>>>> The
>>>>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>>>>> file
>>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>>  least
>>>>>>>>>>>  5
>>>>>>>>>>> genes with AED score less than 0.75. However there were no
>>>>>>>>>>> genes
>>>>>>>>>>>  predicted
>>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have
>>>>>>>>>>> also
>>>>>>>>>>> attached
>>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if you
>>>>>>>>>>> just
>>>>>>>>>>> want
>>>>>>>>>>>  to restrict final gene models to close matches directly within
>>>>>>>>>>> maker.
>>>>>>>>>>> On
>>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>>> training
>>>>>>>>>>>  gene
>>>>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>>>>  dataset
>>>>>>>>>>> for
>>>>>>>>>>>  SNAP training.  There are a number of filters available. Just
>>>>> call
>>>>>>>>>>>  the
>>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>>  Thanks,
>>>>>>>>>>>  Carson
>>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>> Hi Parul,
>>>>>>>>>>> I think the way you described (with the maker_opts.ctl file) is
>>>>> how
>>>>>>>>>>> you
>>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>>> Daniel
>>>>>>>>>>> Daniel Ence
>>>>>>>>>>> Graduate Student
>>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>>> University of Utah
>>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>>> ________________________________________
>>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>  Kudtarkar
>>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>>> Also, are there any other parameters that are required when
>>>>> filtering
>>>>>>>>>>> based on AED score?
>>>>>>>>>>>  Hello Carson,
>>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>>> models
>>>>>>>>>>> at
>>>>>>>>>>> specific AED score.
>>>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>>>> to
>>>>>>>>>>> parameters
>>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>> genes
>>>>>>>>>>> gff3
>>>>>>>>>>>  file to model_gff and  set AED_threshold at desired threshold?
>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>>>> 1
>>>>>>>>>>>  is
>>>>>>>>>>> worst
>>>>>>>>>>>  as
>>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>>> parameter
>>>>>>>>>>> to
>>>>>>>>>>>  require better matching to the evidence by setting it closer
>>>>> to
>>>>>>>>>>> 0.
>>>>>>>>>>> You
>>>>>>>>>>>  can
>>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>>> your
>>>>>>>>>>> calls
>>>>>>>>>>> may
>>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>>  --Carson
>>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>> Dear Maker community,
>>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>>  based
>>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>>Augustus
>>>>> predictions, followed by boot-strapping. I would typically expect
>>>>> 20-30K
>>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>>  indicating
>>>>>>>>>>>  too
>>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>>> predication/script to retain predictions with AED score 1 and
>>>>>>>>>>> if
>>>>>>>>>>> yes
>>>>>>>>>>> how
>>>>>>>>>>> to go about this?
>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>> -l
>>>>>>>>>>> ab
>>>>>>>>>>> .o
>>>>>>>>>>> rg
>>>>>>>>>>>  --
>>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>>a
>>>>> b.
>>>>>>>>>>> or
>>>>>>>>>>> g
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>>a
>>>>> b.
>>>>>>>>>>> or
>>>>>>>>>>> g
>>>>>>>>>>>  _______________________________________________
>>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>>>
>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-l
>>>>>>>>>>>ab
>>>>> .o
>>>>>>>>>>> rg
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>
>>>>>
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>>>>
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> Scientific Programmer
>>> Center for Computational Regulatory Genomics
>>> Beckman Institute,
>>> California Institute of Technology
>>> http://www.spbase.org
>>>
>>
>>
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From carsonhh at gmail.com  Tue Dec 11 07:21:44 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Tue, 11 Dec 2012 09:21:44 -0500
Subject: [maker-devel] AED score
In-Reply-To: <3576.131.215.15.234.1355196504.squirrel@webmail.caltech.edu>
Message-ID: <CCECAB6F.16FD3%carsonhh@gmail.com>

Thanks Parul.  If you need any more help, just let us know.

--Carson



On 12-12-10 10:28 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Carson, Thanks a lot for detailed explanation and all the help with
>running and understanding maker2.
>
>
>> Yes.  Lamprey is not a good match for sea urchin.  When training
>>Augusuts
>> you can sometimes use other genomes as starting points and let Augustus
>> then modify that species to match the models you provided, which can be
>> better than de novo training under certain circumstances. But given sea
>> urchin's evolutionary distance from all the other species bundled with
>> augustus, its probably not a good starting point.  So protein2genome
>> derived models and cegma based training are probably your best options.
>>
>> --Carson
>>
>>
>> On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>
>>>Sorry for not checking this before, just to answer my own question I
>>>just
>>>found after reading augustus documentation that autoAugTrain.pl should
>>>work for generating training dataset for Augustus from using the
>>>gene-model hints from first pass run of maker and using
>>>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script to
>>>generate training.gb
>>>
>>>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>>>
>>>I believe should work better than using lamprey to train augustus.
>>>
>>>Thanks and regards,
>>>Parul Kudtarkar
>>>
>>>> Dear Carson,
>>>>
>>>> Thanks for detailed explanation and help. Now we know the exact
>>>>parameters
>>>> that should help us with generating good gene-model.
>>>>
>>>> The genome for which we are working on gene predictions is
>>>> Echinoderm(sea-urchin). lamprey was the closest organism for training
>>>> augustus that I could find. A quick question for training augustus,
>>>>there
>>>> is augustus_species option how would you go from training data
>>>> generated
>>>> by zff2augustus_gbk.pl > train.gb as specified here
>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>>>> generating the species folder that can be specified to
>>>>augustus_species
>>>> option.
>>>>
>>>> The average expected gene-length in our case is ~15kb.
>>>> We also have a good repeat library for our genome.
>>>>
>>>> Thanks and regards,
>>>> Parul Kudtarkar
>>>>
>>>>> For step 2 and 3, use lamprey rather than human in augustus.  For
>>>>>some
>>>>> reason the current version of augustus doesn't diplay it as an option
>>>>> for
>>>>> the species help menu (so I didn't see it), but it's there in
>>>>> ?/augustus/config/species/lamprey
>>>>>
>>>>> For any additional training, make copies into
>>>>> ?/augustus/config/species/lamprey2 and
>>>>> ?/augustus/config/species/lamprey3
>>>>>
>>>>> Thanks,
>>>>> Carson
>>>>>
>>>>>
>>>>>
>>>>> From:  Carson Holt <carsonhh at gmail.com>
>>>>> Date:  Friday, 7 December, 2012 10:22 AM
>>>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>>>> "maker-devel at yandell-lab.org"
>>>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>>>> Subject:  Re: [maker-devel] AED score
>>>>>
>>>>> Just to add to Daniels comments.
>>>>>
>>>>> Things to change in step 1:
>>>>>> protein= <just try and add more protein evidence in general>
>>>>>> est2genome=0
>>>>>> protein2genome=1
>>>>>> split_hit=20000
>>>>>> min_contig=50000
>>>>>
>>>>> Reasoning:
>>>>>> Your ESTs are very short especially if this is a lamprey species
>>>>>> which
>>>>>> have
>>>>>> very long introns and really short exons.  In lamprey (i.e.
>>>>>> Petromyzon
>>>>>> marinus), genes tend to be very long (remember gene lengths include
>>>>>> introns
>>>>>> and UTR and is not just the size of the coding sequence), so contigs
>>>>>> shorter
>>>>>> than 50kb are useless for training as you are unlikely to get nice
>>>>>> complete
>>>>>> gene models on those.  Also lampreys have very long introns, so you
>>>>>> have
>>>>>> to
>>>>>> allow for bigger introns in alignments (split_hit parameter).
>>>>>> Finally
>>>>>> add as
>>>>>> much protein evidence from as many sources as possible.  Your maker
>>>>>> training
>>>>>> run will take a long time as proteins take forever to align, but
>>>>>> because
>>>>>> of
>>>>>> the evolutionary distance of lamprey from everything else and the
>>>>>>short
>>>>>> exon
>>>>>> structure of its genome, very little aligns directly to its genome
>>>>>>from
>>>>>> other
>>>>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>>>>> species
>>>>>> because of what you said about the  augustus species file you are
>>>>>> using.
>>>>>> Really the only thing closely related to lampreys unfortunately are
>>>>>> other
>>>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related to
>>>>>> lamprey
>>>>>> (while they branch closely together on the tree of life, there are
>>>>>> too
>>>>>> many
>>>>>> years since the last common ancestor).  So while they may have
>>>>>> similar
>>>>>> issues
>>>>>> related to annotation (long introns and short exons etc.) they will
>>>>>>not
>>>>>> really
>>>>>> match that well for the gene predictor or even protein alignments.
>>>>>
>>>>> Additional note:
>>>>>> I have training files for the lamprey species Petromyzon marinus for
>>>>>> both
>>>>>> Augustus and SNAP that I could share with you in a few week, when
>>>>>>the
>>>>>> genome
>>>>>> publication is is released.  But before that happens, new gene
>>>>>>models
>>>>>> will be
>>>>>> available  through the UCSC browser (hopefully within a couple of
>>>>>> weeks), and
>>>>>> gene models are already available through ENSEMBL.  Get those
>>>>>>protein
>>>>>> files
>>>>>> for training, it may be a big help for you.  If you want early
>>>>>>access
>>>>>> to
>>>>>> the
>>>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>>>request
>>>>>> it
>>>>>> from Weiming Li at Michigan State University (the head of that
>>>>>>genome
>>>>>> project).
>>>>>>
>>>>>
>>>>>
>>>>> Things to change in step 2:
>>>>>> Optimally you would be doing de novo training using mRNAseq results,
>>>>>> but
>>>>>> with
>>>>>> on;ly sparse protein alignments and such a fragmented assembly, you
>>>>>>are
>>>>>> probably better off just trying to adapt the human HMM files.  They
>>>>>> won't
>>>>>> match that well, but you probably won't have the evidence for De
>>>>>>Novo
>>>>>> training.  First make a copy of the augustus human species directory
>>>>>> and
>>>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>>>>> retraining
>>>>>> augustus using your new models.  You will have to edit multiple
>>>>>>files
>>>>>> in
>>>>>> the
>>>>>> directory after you copy it so that they no longer say human or homo
>>>>>> sapiens
>>>>>> internally or in the file name.  Use maker2zff to generate the
>>>>>>filtered
>>>>>> ZFF
>>>>>> file for training SNAP, but don't train SNAP.  Rather use the
>>>>>> training
>>>>>> file to
>>>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>>>
>>>>>> MAKE a backup of the step 1 maker output directory and run step 2 in
>>>>>> the
>>>>>> old
>>>>>> step 1 directory (this allows you to change the parameters and reuse
>>>>>> files
>>>>>> form step 1 so you don't have to recalculate all the protein and EST
>>>>>> alignments).  So control files for step 2 are identical to step 1
>>>>>> except
>>>>>> for
>>>>>> these parameters.
>>>>>>
>>>>>> protein2genome=0
>>>>>> augustus_species=lamprey
>>>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>>>
>>>>>> Don't both training SNAP here as you probably won't have enough data
>>>>>> and
>>>>>> you
>>>>>> assembly is too fragmented for it to work well, so just stick to
>>>>>> augustus.
>>>>>> Try SNAP if you want just to see how well it works.  Manually open
>>>>>>up
>>>>>> the
>>>>>> largest contigs in a viewer to look at the models produced from the
>>>>>> MAKER run
>>>>>> to see if they look reasonable (this will also help you decide
>>>>>> whether
>>>>>> to keep
>>>>>> SNAP).
>>>>>>
>>>>>
>>>>> Things to change in step 3:
>>>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.  But
>>>>>> make
>>>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>>>> ?/augustus/config/species/lamprey2 (editing all the files and names
>>>>>> as
>>>>>> you did
>>>>>> in step 2). This way you don't loose that training data if you
>>>>>>decide
>>>>>> to
>>>>>> step
>>>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>>>
>>>>>> augustus_species=lamprey2
>>>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>>>
>>>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>>>> (This
>>>>>> is
>>>>>> for file reuse, so the step will run fast).  This must be the exact
>>>>>> same
>>>>>> step
>>>>>> directory as step 2 for the reuse trick to work.
>>>>>>
>>>>>> Manually review the models and if you are satisfied move to step 4.
>>>>>> Also note
>>>>>> that most parameters including the protein, EST, and repeats should
>>>>>>not
>>>>>> change
>>>>>> from step1-step3, and should not be removed for step 4 either, you
>>>>>> can
>>>>>> add
>>>>>> more evidence, but don't remove evidence (like the repeats).
>>>>>>
>>>>>>
>>>>> Things to change in step 4:
>>>>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>>>>> step
>>>>>> 3
>>>>>> directory to get the smaller contigs annotated.  This should be your
>>>>>> final
>>>>>> step, although you can try altering other parameters or adding more
>>>>>> evidence
>>>>>> sources here etc.
>>>>>>
>>>>>>
>>>>> For other things to keep in mind, you should consider taking extra
>>>>> time
>>>>> to
>>>>> build a comprehensive library of repeats for your species, I know
>>>>>that
>>>>> Petromyzon marinus was virtually unannotatable until we had a very
>>>>> deep
>>>>> repeat library built for it.  Any repeat library should be used in
>>>>>all
>>>>> steps.  Also for lamprey, you will expect between 20,000-30,000 genes
>>>>> both
>>>>> because of your assemblies fragmentation and because of some
>>>>>ancestral
>>>>> genome duplication.  Also be aware that lampreys appear to undergo
>>>>> programmed genome loss in somatic tissues, so any gene count you get
>>>>> is
>>>>> only
>>>>> going to represent a maximum of 75-80% of all genes unless the
>>>>> assembly
>>>>> is
>>>>> derived from germline tissue.
>>>>>
>>>>> Thanks,
>>>>> Carson
>>>>>
>>>>>
>>>>>>
>>>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>
>>>>>> Hi Parul,
>>>>>>
>>>>>> In step one, if protein2genome isn't turned on, then the protein
>>>>>> alignments
>>>>>> wont be used to generate gene models. Carson said before to use
>>>>>> protein2genome
>>>>>> to generate gene models for your trainings set, but you should know
>>>>>> that
>>>>>> those
>>>>>> data aren't being used right now.
>>>>>>
>>>>>> In step 2, you can include the est and protein evidence that you
>>>>>>used
>>>>>> in
>>>>>> step
>>>>>> one, and the ab-initio predictors will takes those data as hints to
>>>>>> guide
>>>>>> their predictions. Also, are you reannotating human here? I'm just
>>>>>> wondering
>>>>>> why the snap file is called Pult, but the augustus species model is
>>>>>> human.
>>>>>> Also, I think you should include the same masking files from step 1,
>>>>>> otherwise
>>>>>> the ab-initio predictors will be predicting on the unmasked sequence
>>>>>> which
>>>>>> will give you many spurious predictions.
>>>>>>
>>>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>>>control
>>>>>> file
>>>>>> you sent for step 3 will just pass-through all of the data from
>>>>>>before.
>>>>>>
>>>>>> In step 4, I think what you'll get is pretty close to what you
>>>>>> already
>>>>>> had in
>>>>>> step 3. The gene models from step 3 are already based on the est and
>>>>>> protein
>>>>>> data from step 1, so without giving any different evidence or
>>>>>>ab-initio
>>>>>> predictors, I think that you will just get the same gene models that
>>>>>> you
>>>>>> got
>>>>>> from step 3. Those gene models are what you should be using to train
>>>>>> snap.
>>>>>> Also, is this the same genome as in the other steps? The genome file
>>>>>> here is
>>>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>>>
>>>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>>>create
>>>>>> models. If you don't give any evidence (EST or protein) maker will
>>>>>> not
>>>>>> annotate any gene models. You have also changed the augustus species
>>>>>> model in
>>>>>> this step, but I don't know what you've gained by going from one
>>>>>> species
>>>>>> to
>>>>>> another. You should be training augustus with the gene models and
>>>>>> then
>>>>>> creating a new species model in augustus. As I understand it, the
>>>>>> filter
>>>>>> only
>>>>>> operates on gene models, not ab-initio predictions or alignments, so
>>>>>>it
>>>>>> probably isn't doing anything the way you have it set.
>>>>>>
>>>>>> Step 6. I think step 5 and 6 should be combined. I don't know what
>>>>>> you
>>>>>> mean by
>>>>>> boot-strapping here too.
>>>>>>
>>>>>> Hopefully that clears up some of the confusion with how maker works.
>>>>>> Carson
>>>>>> will probably have a lot of suggestions too.
>>>>>>
>>>>>> Thanks,
>>>>>> Daniel
>>>>>>
>>>>>> Daniel Ence
>>>>>> Graduate Student
>>>>>> Eccles Institute of Human Genetics
>>>>>> University of Utah
>>>>>> 15 North 2030 East, Room 2100
>>>>>> Salt Lake City, UT 84112-5330
>>>>>> ________________________________________
>>>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>>>> To: carsonhh at gmail.com
>>>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>
>>>>>> Hi Carson,
>>>>>>
>>>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>>>> 30,000
>>>>>> genes.
>>>>>> Here are the step
>>>>>> Step1. EST and proteins are used to predict gene-models. the
>>>>>> resulting
>>>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>>>> turned
>>>>>> ON
>>>>>> Step2. Augustus and SNAP is used to predict genes.
>>>>>> Step3. The results are re-annoated(boot-strap)
>>>>>> Step4. EST and proteins are used to predict gene-models. The gff
>>>>>>file
>>>>>> from
>>>>>> step3. is used as model_gff. The resulting file is used as training
>>>>>> data-set for SNAP in step2
>>>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to
>>>>>>0.5
>>>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5
>>>>>> and
>>>>>> contig_size to 10kb
>>>>>>
>>>>>> Thanks and regards,
>>>>>> Parul Kudtarkar
>>>>>>
>>>>>> I have attached the configuration file for each step.
>>>>>>>  Your output has no genes.  They've all been filtered out.  The
>>>>>>>gene
>>>>>> predictions are left for reference purposes, but there are no gene
>>>>>> models
>>>>>>>  in the file.  You need to look at the type columns in the GFF3
>>>>>>>file
>>>>>>> -->
>>>>>> match/match_part features are evidence and reference data but not
>>>>>> models.
>>>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if you
>>>>>>> just
>>>>>> want gene models in your file you can use the gff3_merge script with
>>>>>> the
>>>>>> -g option, and it will only print out the gene models.
>>>>>>>  I think you may be misinterpreting what is happening at different
>>>>>>> steps,
>>>>>> as well as how to read the result files.  Could you give me a
>>>>>> detailed
>>>>>> explanation of what you expect to get back together with your
>>>>>>control
>>>>>> files and I can walk you through the configuration, and indicate
>>>>>>what
>>>>>> to
>>>>>> expect.  Also what was the report like from CEGMA. Could you include
>>>>>> the
>>>>>> report file that shows how complete your genome is and how
>>>>>>fragmented
>>>>>> it
>>>>>> is?
>>>>>>>  Thanks,
>>>>>>>  Carson
>>>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>>>>> Dear Carson,
>>>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>>>> Though for previous step(ab-intio gene predictions keep_preds was
>>>>>>>>set
>>>>>>>> to
>>>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>>>> Scaffold1_out.gff.
>>>>>>>> Please advice.
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>>  You should always get all predictions, but should only get
>>>>>>>>>models
>>>>>> (match/match_part) with AED scores less than 0.5.  You should never
>>>>>>get
>>>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you have
>>>>>> keep_preds set.
>>>>>>>>>  Do you have keeps_preds set or gene models with AED values above
>>>>>>>>> your
>>>>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>>>> case,
>>>>>>>>>  just set it to 0.  If the second one in the case, could you send
>>>>>>>>>me
>>>>>> example GFF3?
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>>> Dear Carson,
>>>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>>>> short
>>>>>>>>>>  ESTs.
>>>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>>>> prediction(used as training dataset)and abinitio
>>>>>>>>>> gene-prediction).
>>>>>> Here
>>>>>>>>>> are the control parameters I am using with AED score set to 0.5,
>>>>>>>>>>  however
>>>>>>>>>>  I
>>>>>>>>>> get predictions that includes the ones with AED score of 1.00 in
>>>>>>>>>>  resulting
>>>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3 of
>>>>>>>>>>  initial
>>>>>>>>>> gff3 file.
>>>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>>>>  eukaryotic
>>>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this gff3
>>>>>>>>>> file
>>>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 =
>>>>>>>>>> yes,
>>>>>>>>>> 0
>>>>>>>>>> =
>>>>>> no
>>>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes, 0
>>>>>>>>>> =
>>>>>>>>>> no
>>>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0
>>>>>>=
>>>>>>>>>>  no
>>>>>>>>>> #-----MAKER Behavior Options
>>>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed
>>>>>>>>>> (bound
>>>>>>>>>> by
>>>>>> 0
>>>>>>>>>> and 1)
>>>>>>>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to
>>>>>>>>>>>be
>>>>>>>>>>> partial
>>>>>>>>>>> at
>>>>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>>>>> those
>>>>>> by
>>>>>>>>>>>  using maker's est_gff option to pass in results from cufflinks
>>>>>>>>>>>or
>>>>>>>>>>> trinity.
>>>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb
>>>>>>>>>>>in
>>>>>> size,
>>>>>>>>>>> just
>>>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>>>> maker_opts.ctl file.
>>>>>>>>>>>  Thanks,
>>>>>>>>>>>  Carson
>>>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>>>with
>>>>>> N50
>>>>>>>>>>>>  of
>>>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>>>> reason
>>>>>>>>>>>>  when
>>>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>>>> predicted
>>>>>> despite the model_gff file has few genes with scores less than 0.75?
>>>>>> Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>>>> contig.
>>>>>>>>>>>> First
>>>>>>>>>>>>  it seems to be repeat rich with a very low gene density.  You
>>>>>>>>>>>> also
>>>>>>>>>>>> have
>>>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>>>> getting
>>>>>> many
>>>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>>>> models
>>>>>> that
>>>>>>>>>>>> are
>>>>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>>>>> piece
>>>>>>>>>>>> of
>>>>>>>>>>>> a
>>>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>>>reason
>>>>>>>>>>>>  unless
>>>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).    Your
>>>>>>>>>>>>  protein
>>>>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>>>>> need
>>>>>> to
>>>>>>>>>>>> add
>>>>>>>>>>>>  more proteins from a couple of related species, and you might
>>>>>> consider
>>>>>>>>>>>> using protein2genome rather than est2genome as a predictor if
>>>>>>>>>>>>you
>>>>>> are
>>>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>>>> produced
>>>>>> models
>>>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>>>with
>>>>>> the
>>>>>>>>>>>> AED_threshold with such limited protein support does create an
>>>>>> artificial
>>>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>>>  How many contigs do you have in total and what is the N50
>>>>>>>>>>>> value
>>>>>> for
>>>>>>>>>>>> the
>>>>>>>>>>>> assembly? If you have a large number of very short contigs,
>>>>>>>>>>>>you
>>>>>>>>>>>> will
>>>>>>>>>>>>  get
>>>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>>>> contigs
>>>>>>>>>>>>  and
>>>>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>>>>> just
>>>>>> assembled in a slightly different way (so you can get bits and
>>>>>> pieces
>>>>>>>>>>>>  of
>>>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>>>  confounding
>>>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>>>> would
>>>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>>>  completeness
>>>>>>>>>>>> as
>>>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>>>> statistics
>>>>>>>>>>>> produced
>>>>>>>>>>>>  is a percent of genes that are found complete (end to end) vs
>>>>>> those
>>>>>>>>>>>>  that
>>>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend
>>>>>>>>>>>>to
>>>>>>>>>>>> be
>>>>>> shorter
>>>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>>>CEGMA
>>>>>> gives
>>>>>>>>>>>>  a
>>>>>>>>>>>> high partial percentage and a low complete percentage, then
>>>>>>>>>>>> this
>>>>>>>>>>>>  pattern
>>>>>>>>>>>> can be expected to be even more exaggerated for other genes in
>>>>>>>>>>>> the
>>>>>> genome.
>>>>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>>>>> well
>>>>>> then
>>>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>>>genomes
>>>>>> end
>>>>>>>>>>>>  up
>>>>>>>>>>>> having extremely fragmented assemblies (on the order of
>>>>>>>>>>>>100,000
>>>>>> contigs),
>>>>>>>>>>>>  and if they are distantly related to other annotated species
>>>>>>>>>>>>few
>>>>>>>>>>>> proteins
>>>>>>>>>>>>  may align to the contigs because the introns in the
>>>>>>>>>>>>alignments
>>>>>> tend
>>>>>>>>>>>>  to
>>>>>>>>>>>> be
>>>>>>>>>>>>  so long and exons so short that it pushes down the
>>>>>>>>>>>> significance
>>>>>> scores
>>>>>>>>>>>> too
>>>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if
>>>>>>>>>>>> not
>>>>>> only
>>>>>>>>>>>>  way
>>>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>  Carson
>>>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>>score.
>>>>>> The
>>>>>>>>>>>> input gff3 file was provided to option model_pred(see attached
>>>>>>>>>>>> file
>>>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>>>  least
>>>>>>>>>>>>  5
>>>>>>>>>>>> genes with AED score less than 0.75. However there were no
>>>>>>>>>>>> genes
>>>>>>>>>>>>  predicted
>>>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have
>>>>>>>>>>>> also
>>>>>>>>>>>> attached
>>>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if
>>>>>>>>>>>>you
>>>>>>>>>>>> just
>>>>>>>>>>>> want
>>>>>>>>>>>>  to restrict final gene models to close matches directly
>>>>>>>>>>>>within
>>>>>>>>>>>> maker.
>>>>>>>>>>>> On
>>>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>>>> training
>>>>>>>>>>>>  gene
>>>>>>>>>>>> predictors, use the maker2zff script for generating a filtered
>>>>>>>>>>>>  dataset
>>>>>>>>>>>> for
>>>>>>>>>>>>  SNAP training.  There are a number of filters available. Just
>>>>>> call
>>>>>>>>>>>>  the
>>>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>  Carson
>>>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>> Hi Parul,
>>>>>>>>>>>> I think the way you described (with the maker_opts.ctl file)
>>>>>>>>>>>>is
>>>>>> how
>>>>>>>>>>>> you
>>>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>>>> Daniel
>>>>>>>>>>>> Daniel Ence
>>>>>>>>>>>> Graduate Student
>>>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>>>> University of Utah
>>>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>>>> ________________________________________
>>>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>>  Kudtarkar
>>>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>>>> Also, are there any other parameters that are required when
>>>>>> filtering
>>>>>>>>>>>> based on AED score?
>>>>>>>>>>>>  Hello Carson,
>>>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>>>> models
>>>>>>>>>>>> at
>>>>>>>>>>>> specific AED score.
>>>>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>>>>> to
>>>>>>>>>>>> parameters
>>>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>> genes
>>>>>>>>>>>> gff3
>>>>>>>>>>>>  file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>threshold?
>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>>>>> 1
>>>>>>>>>>>>  is
>>>>>>>>>>>> worst
>>>>>>>>>>>>  as
>>>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>>>> parameter
>>>>>>>>>>>> to
>>>>>>>>>>>>  require better matching to the evidence by setting it closer
>>>>>> to
>>>>>>>>>>>> 0.
>>>>>>>>>>>> You
>>>>>>>>>>>>  can
>>>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>>>> your
>>>>>>>>>>>> calls
>>>>>>>>>>>> may
>>>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>>>  --Carson
>>>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>> Dear Maker community,
>>>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>  based
>>>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>>>Augustus
>>>>>> predictions, followed by boot-strapping. I would typically expect
>>>>>> 20-30K
>>>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>  indicating
>>>>>>>>>>>>  too
>>>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>>>> predication/script to retain predictions with AED score 1 and
>>>>>>>>>>>> if
>>>>>>>>>>>> yes
>>>>>>>>>>>> how
>>>>>>>>>>>> to go about this?
>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>> 
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>> -l
>>>>>>>>>>>> ab
>>>>>>>>>>>> .o
>>>>>>>>>>>> rg
>>>>>>>>>>>>  --
>>>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-l
>>>>>>>>>>>>a
>>>>>> b.
>>>>>>>>>>>> or
>>>>>>>>>>>> g
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-l
>>>>>>>>>>>>a
>>>>>> b.
>>>>>>>>>>>> or
>>>>>>>>>>>> g
>>>>>>>>>>>>  _______________________________________________
>>>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>>>>
>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>-l
>>>>>>>>>>>>ab
>>>>>> .o
>>>>>>>>>>>> rg
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>>>>
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> Scientific Programmer
>>>> Center for Computational Regulatory Genomics
>>>> Beckman Institute,
>>>> California Institute of Technology
>>>> http://www.spbase.org
>>>>
>>>
>>>
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>>>
>>
>>
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>





From parulk at caltech.edu  Thu Dec 13 15:16:53 2012
From: parulk at caltech.edu (Parul Kudtarkar)
Date: Thu, 13 Dec 2012 14:16:53 -0800 (PST)
Subject: [maker-devel] AED score
In-Reply-To: <CCECAB6F.16FD3%carsonhh@gmail.com>
References: <CCECAB6F.16FD3%carsonhh@gmail.com>
Message-ID: <4575.131.215.15.234.1355437013.squirrel@webmail.caltech.edu>

Dear Carson,

Could you please advice how to combine results from protein2genome
derived models and cegma based training to be provided as training species
for augustus or are theses supposed to be run as separate maker2 run(i.e.
run maker2 with training set from protein2genome first followed by
cegma-based training set)

Thanks and regards,
Parul

> Thanks Parul.  If you need any more help, just let us know.
>
> --Carson
>
>
>
> On 12-12-10 10:28 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>
>>Dear Carson, Thanks a lot for detailed explanation and all the help with
>>running and understanding maker2.
>>
>>
>>> Yes.  Lamprey is not a good match for sea urchin.  When training
>>>Augusuts
>>> you can sometimes use other genomes as starting points and let Augustus
>>> then modify that species to match the models you provided, which can be
>>> better than de novo training under certain circumstances. But given sea
>>> urchin's evolutionary distance from all the other species bundled with
>>> augustus, its probably not a good starting point.  So protein2genome
>>> derived models and cegma based training are probably your best options.
>>>
>>> --Carson
>>>
>>>
>>> On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>
>>>>Sorry for not checking this before, just to answer my own question I
>>>>just
>>>>found after reading augustus documentation that autoAugTrain.pl should
>>>>work for generating training dataset for Augustus from using the
>>>>gene-model hints from first pass run of maker and using
>>>>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script
>>>> to
>>>>generate training.gb
>>>>
>>>>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>>>>
>>>>I believe should work better than using lamprey to train augustus.
>>>>
>>>>Thanks and regards,
>>>>Parul Kudtarkar
>>>>
>>>>> Dear Carson,
>>>>>
>>>>> Thanks for detailed explanation and help. Now we know the exact
>>>>>parameters
>>>>> that should help us with generating good gene-model.
>>>>>
>>>>> The genome for which we are working on gene predictions is
>>>>> Echinoderm(sea-urchin). lamprey was the closest organism for training
>>>>> augustus that I could find. A quick question for training augustus,
>>>>>there
>>>>> is augustus_species option how would you go from training data
>>>>> generated
>>>>> by zff2augustus_gbk.pl > train.gb as specified here
>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>>>>> generating the species folder that can be specified to
>>>>>augustus_species
>>>>> option.
>>>>>
>>>>> The average expected gene-length in our case is ~15kb.
>>>>> We also have a good repeat library for our genome.
>>>>>
>>>>> Thanks and regards,
>>>>> Parul Kudtarkar
>>>>>
>>>>>> For step 2 and 3, use lamprey rather than human in augustus.  For
>>>>>>some
>>>>>> reason the current version of augustus doesn't diplay it as an
>>>>>> option
>>>>>> for
>>>>>> the species help menu (so I didn't see it), but it's there in
>>>>>> ?/augustus/config/species/lamprey
>>>>>>
>>>>>> For any additional training, make copies into
>>>>>> ?/augustus/config/species/lamprey2 and
>>>>>> ?/augustus/config/species/lamprey3
>>>>>>
>>>>>> Thanks,
>>>>>> Carson
>>>>>>
>>>>>>
>>>>>>
>>>>>> From:  Carson Holt <carsonhh at gmail.com>
>>>>>> Date:  Friday, 7 December, 2012 10:22 AM
>>>>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>>>>> "maker-devel at yandell-lab.org"
>>>>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>>>>> Subject:  Re: [maker-devel] AED score
>>>>>>
>>>>>> Just to add to Daniels comments.
>>>>>>
>>>>>> Things to change in step 1:
>>>>>>> protein= <just try and add more protein evidence in general>
>>>>>>> est2genome=0
>>>>>>> protein2genome=1
>>>>>>> split_hit=20000
>>>>>>> min_contig=50000
>>>>>>
>>>>>> Reasoning:
>>>>>>> Your ESTs are very short especially if this is a lamprey species
>>>>>>> which
>>>>>>> have
>>>>>>> very long introns and really short exons.  In lamprey (i.e.
>>>>>>> Petromyzon
>>>>>>> marinus), genes tend to be very long (remember gene lengths include
>>>>>>> introns
>>>>>>> and UTR and is not just the size of the coding sequence), so
>>>>>>> contigs
>>>>>>> shorter
>>>>>>> than 50kb are useless for training as you are unlikely to get nice
>>>>>>> complete
>>>>>>> gene models on those.  Also lampreys have very long introns, so you
>>>>>>> have
>>>>>>> to
>>>>>>> allow for bigger introns in alignments (split_hit parameter).
>>>>>>> Finally
>>>>>>> add as
>>>>>>> much protein evidence from as many sources as possible.  Your maker
>>>>>>> training
>>>>>>> run will take a long time as proteins take forever to align, but
>>>>>>> because
>>>>>>> of
>>>>>>> the evolutionary distance of lamprey from everything else and the
>>>>>>>short
>>>>>>> exon
>>>>>>> structure of its genome, very little aligns directly to its genome
>>>>>>>from
>>>>>>> other
>>>>>>> deuterstome and vertebrate species.  I'm assuming this is a lamprey
>>>>>>> species
>>>>>>> because of what you said about the  augustus species file you are
>>>>>>> using.
>>>>>>> Really the only thing closely related to lampreys unfortunately are
>>>>>>> other
>>>>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related
>>>>>>> to
>>>>>>> lamprey
>>>>>>> (while they branch closely together on the tree of life, there are
>>>>>>> too
>>>>>>> many
>>>>>>> years since the last common ancestor).  So while they may have
>>>>>>> similar
>>>>>>> issues
>>>>>>> related to annotation (long introns and short exons etc.) they will
>>>>>>>not
>>>>>>> really
>>>>>>> match that well for the gene predictor or even protein alignments.
>>>>>>
>>>>>> Additional note:
>>>>>>> I have training files for the lamprey species Petromyzon marinus
>>>>>>> for
>>>>>>> both
>>>>>>> Augustus and SNAP that I could share with you in a few week, when
>>>>>>>the
>>>>>>> genome
>>>>>>> publication is is released.  But before that happens, new gene
>>>>>>>models
>>>>>>> will be
>>>>>>> available  through the UCSC browser (hopefully within a couple of
>>>>>>> weeks), and
>>>>>>> gene models are already available through ENSEMBL.  Get those
>>>>>>>protein
>>>>>>> files
>>>>>>> for training, it may be a big help for you.  If you want early
>>>>>>>access
>>>>>>> to
>>>>>>> the
>>>>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>>>>request
>>>>>>> it
>>>>>>> from Weiming Li at Michigan State University (the head of that
>>>>>>>genome
>>>>>>> project).
>>>>>>>
>>>>>>
>>>>>>
>>>>>> Things to change in step 2:
>>>>>>> Optimally you would be doing de novo training using mRNAseq
>>>>>>> results,
>>>>>>> but
>>>>>>> with
>>>>>>> on;ly sparse protein alignments and such a fragmented assembly, you
>>>>>>>are
>>>>>>> probably better off just trying to adapt the human HMM files.  They
>>>>>>> won't
>>>>>>> match that well, but you probably won't have the evidence for De
>>>>>>>Novo
>>>>>>> training.  First make a copy of the augustus human species
>>>>>>> directory
>>>>>>> and
>>>>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>>>>> ?/augustus/config/species/lamprey).  Use it as the base species for
>>>>>>> retraining
>>>>>>> augustus using your new models.  You will have to edit multiple
>>>>>>>files
>>>>>>> in
>>>>>>> the
>>>>>>> directory after you copy it so that they no longer say human or
>>>>>>> homo
>>>>>>> sapiens
>>>>>>> internally or in the file name.  Use maker2zff to generate the
>>>>>>>filtered
>>>>>>> ZFF
>>>>>>> file for training SNAP, but don't train SNAP.  Rather use the
>>>>>>> training
>>>>>>> file to
>>>>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>>>>
>>>>>>> MAKE a backup of the step 1 maker output directory and run step 2
>>>>>>> in
>>>>>>> the
>>>>>>> old
>>>>>>> step 1 directory (this allows you to change the parameters and
>>>>>>> reuse
>>>>>>> files
>>>>>>> form step 1 so you don't have to recalculate all the protein and
>>>>>>> EST
>>>>>>> alignments).  So control files for step 2 are identical to step 1
>>>>>>> except
>>>>>>> for
>>>>>>> these parameters.
>>>>>>>
>>>>>>> protein2genome=0
>>>>>>> augustus_species=lamprey
>>>>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>>>>
>>>>>>> Don't both training SNAP here as you probably won't have enough
>>>>>>> data
>>>>>>> and
>>>>>>> you
>>>>>>> assembly is too fragmented for it to work well, so just stick to
>>>>>>> augustus.
>>>>>>> Try SNAP if you want just to see how well it works.  Manually open
>>>>>>>up
>>>>>>> the
>>>>>>> largest contigs in a viewer to look at the models produced from the
>>>>>>> MAKER run
>>>>>>> to see if they look reasonable (this will also help you decide
>>>>>>> whether
>>>>>>> to keep
>>>>>>> SNAP).
>>>>>>>
>>>>>>
>>>>>> Things to change in step 3:
>>>>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.
>>>>>>> But
>>>>>>> make
>>>>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>>>>> ?/augustus/config/species/lamprey2 (editing all the files and names
>>>>>>> as
>>>>>>> you did
>>>>>>> in step 2). This way you don't loose that training data if you
>>>>>>>decide
>>>>>>> to
>>>>>>> step
>>>>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>>>>
>>>>>>> augustus_species=lamprey2
>>>>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>>>>
>>>>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>>>>> (This
>>>>>>> is
>>>>>>> for file reuse, so the step will run fast).  This must be the exact
>>>>>>> same
>>>>>>> step
>>>>>>> directory as step 2 for the reuse trick to work.
>>>>>>>
>>>>>>> Manually review the models and if you are satisfied move to step 4.
>>>>>>> Also note
>>>>>>> that most parameters including the protein, EST, and repeats should
>>>>>>>not
>>>>>>> change
>>>>>>> from step1-step3, and should not be removed for step 4 either, you
>>>>>>> can
>>>>>>> add
>>>>>>> more evidence, but don't remove evidence (like the repeats).
>>>>>>>
>>>>>>>
>>>>>> Things to change in step 4:
>>>>>>> For this step, just set min_contig=10000 and rerun MAKER inside the
>>>>>>> step
>>>>>>> 3
>>>>>>> directory to get the smaller contigs annotated.  This should be
>>>>>>> your
>>>>>>> final
>>>>>>> step, although you can try altering other parameters or adding more
>>>>>>> evidence
>>>>>>> sources here etc.
>>>>>>>
>>>>>>>
>>>>>> For other things to keep in mind, you should consider taking extra
>>>>>> time
>>>>>> to
>>>>>> build a comprehensive library of repeats for your species, I know
>>>>>>that
>>>>>> Petromyzon marinus was virtually unannotatable until we had a very
>>>>>> deep
>>>>>> repeat library built for it.  Any repeat library should be used in
>>>>>>all
>>>>>> steps.  Also for lamprey, you will expect between 20,000-30,000
>>>>>> genes
>>>>>> both
>>>>>> because of your assemblies fragmentation and because of some
>>>>>>ancestral
>>>>>> genome duplication.  Also be aware that lampreys appear to undergo
>>>>>> programmed genome loss in somatic tissues, so any gene count you get
>>>>>> is
>>>>>> only
>>>>>> going to represent a maximum of 75-80% of all genes unless the
>>>>>> assembly
>>>>>> is
>>>>>> derived from germline tissue.
>>>>>>
>>>>>> Thanks,
>>>>>> Carson
>>>>>>
>>>>>>
>>>>>>>
>>>>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>
>>>>>>> Hi Parul,
>>>>>>>
>>>>>>> In step one, if protein2genome isn't turned on, then the protein
>>>>>>> alignments
>>>>>>> wont be used to generate gene models. Carson said before to use
>>>>>>> protein2genome
>>>>>>> to generate gene models for your trainings set, but you should know
>>>>>>> that
>>>>>>> those
>>>>>>> data aren't being used right now.
>>>>>>>
>>>>>>> In step 2, you can include the est and protein evidence that you
>>>>>>>used
>>>>>>> in
>>>>>>> step
>>>>>>> one, and the ab-initio predictors will takes those data as hints to
>>>>>>> guide
>>>>>>> their predictions. Also, are you reannotating human here? I'm just
>>>>>>> wondering
>>>>>>> why the snap file is called Pult, but the augustus species model is
>>>>>>> human.
>>>>>>> Also, I think you should include the same masking files from step
>>>>>>> 1,
>>>>>>> otherwise
>>>>>>> the ab-initio predictors will be predicting on the unmasked
>>>>>>> sequence
>>>>>>> which
>>>>>>> will give you many spurious predictions.
>>>>>>>
>>>>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>>>>control
>>>>>>> file
>>>>>>> you sent for step 3 will just pass-through all of the data from
>>>>>>>before.
>>>>>>>
>>>>>>> In step 4, I think what you'll get is pretty close to what you
>>>>>>> already
>>>>>>> had in
>>>>>>> step 3. The gene models from step 3 are already based on the est
>>>>>>> and
>>>>>>> protein
>>>>>>> data from step 1, so without giving any different evidence or
>>>>>>>ab-initio
>>>>>>> predictors, I think that you will just get the same gene models
>>>>>>> that
>>>>>>> you
>>>>>>> got
>>>>>>> from step 3. Those gene models are what you should be using to
>>>>>>> train
>>>>>>> snap.
>>>>>>> Also, is this the same genome as in the other steps? The genome
>>>>>>> file
>>>>>>> here is
>>>>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>>>>
>>>>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>>>>create
>>>>>>> models. If you don't give any evidence (EST or protein) maker will
>>>>>>> not
>>>>>>> annotate any gene models. You have also changed the augustus
>>>>>>> species
>>>>>>> model in
>>>>>>> this step, but I don't know what you've gained by going from one
>>>>>>> species
>>>>>>> to
>>>>>>> another. You should be training augustus with the gene models and
>>>>>>> then
>>>>>>> creating a new species model in augustus. As I understand it, the
>>>>>>> filter
>>>>>>> only
>>>>>>> operates on gene models, not ab-initio predictions or alignments,
>>>>>>> so
>>>>>>>it
>>>>>>> probably isn't doing anything the way you have it set.
>>>>>>>
>>>>>>> Step 6. I think step 5 and 6 should be combined. I don't know what
>>>>>>> you
>>>>>>> mean by
>>>>>>> boot-strapping here too.
>>>>>>>
>>>>>>> Hopefully that clears up some of the confusion with how maker
>>>>>>> works.
>>>>>>> Carson
>>>>>>> will probably have a lot of suggestions too.
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Daniel
>>>>>>>
>>>>>>> Daniel Ence
>>>>>>> Graduate Student
>>>>>>> Eccles Institute of Human Genetics
>>>>>>> University of Utah
>>>>>>> 15 North 2030 East, Room 2100
>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>> ________________________________________
>>>>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>>>>> To: carsonhh at gmail.com
>>>>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>
>>>>>>> Hi Carson,
>>>>>>>
>>>>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>>>>> 30,000
>>>>>>> genes.
>>>>>>> Here are the step
>>>>>>> Step1. EST and proteins are used to predict gene-models. the
>>>>>>> resulting
>>>>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>>>>> turned
>>>>>>> ON
>>>>>>> Step2. Augustus and SNAP is used to predict genes.
>>>>>>> Step3. The results are re-annoated(boot-strap)
>>>>>>> Step4. EST and proteins are used to predict gene-models. The gff
>>>>>>>file
>>>>>>> from
>>>>>>> step3. is used as model_gff. The resulting file is used as training
>>>>>>> data-set for SNAP in step2
>>>>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set to
>>>>>>>0.5
>>>>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5
>>>>>>> and
>>>>>>> contig_size to 10kb
>>>>>>>
>>>>>>> Thanks and regards,
>>>>>>> Parul Kudtarkar
>>>>>>>
>>>>>>> I have attached the configuration file for each step.
>>>>>>>>  Your output has no genes.  They've all been filtered out.  The
>>>>>>>>gene
>>>>>>> predictions are left for reference purposes, but there are no gene
>>>>>>> models
>>>>>>>>  in the file.  You need to look at the type columns in the GFF3
>>>>>>>>file
>>>>>>>> -->
>>>>>>> match/match_part features are evidence and reference data but not
>>>>>>> models.
>>>>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if
>>>>>>>> you
>>>>>>>> just
>>>>>>> want gene models in your file you can use the gff3_merge script
>>>>>>> with
>>>>>>> the
>>>>>>> -g option, and it will only print out the gene models.
>>>>>>>>  I think you may be misinterpreting what is happening at different
>>>>>>>> steps,
>>>>>>> as well as how to read the result files.  Could you give me a
>>>>>>> detailed
>>>>>>> explanation of what you expect to get back together with your
>>>>>>>control
>>>>>>> files and I can walk you through the configuration, and indicate
>>>>>>>what
>>>>>>> to
>>>>>>> expect.  Also what was the report like from CEGMA. Could you
>>>>>>> include
>>>>>>> the
>>>>>>> report file that shows how complete your genome is and how
>>>>>>>fragmented
>>>>>>> it
>>>>>>> is?
>>>>>>>>  Thanks,
>>>>>>>>  Carson
>>>>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>> wrote:
>>>>>>>>> Dear Carson,
>>>>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>>>>> Though for previous step(ab-intio gene predictions keep_preds was
>>>>>>>>>set
>>>>>>>>> to
>>>>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>>>>> Scaffold1_out.gff.
>>>>>>>>> Please advice.
>>>>>>>>> Thanks and regards,
>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>  You should always get all predictions, but should only get
>>>>>>>>>>models
>>>>>>> (match/match_part) with AED scores less than 0.5.  You should never
>>>>>>>get
>>>>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you
>>>>>>>>>> have
>>>>>>> keep_preds set.
>>>>>>>>>>  Do you have keeps_preds set or gene models with AED values
>>>>>>>>>> above
>>>>>>>>>> your
>>>>>>> threshold (not match/match_part features)?  If the first one is the
>>>>>>>>>> case,
>>>>>>>>>>  just set it to 0.  If the second one in the case, could you
>>>>>>>>>> send
>>>>>>>>>>me
>>>>>>> example GFF3?
>>>>>>>>>>  Thanks,
>>>>>>>>>>  Carson
>>>>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>> wrote:
>>>>>>>>>>> Dear Carson,
>>>>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>>>>> short
>>>>>>>>>>>  ESTs.
>>>>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>>>>> prediction(used as training dataset)and abinitio
>>>>>>>>>>> gene-prediction).
>>>>>>> Here
>>>>>>>>>>> are the control parameters I am using with AED score set to
>>>>>>>>>>> 0.5,
>>>>>>>>>>>  however
>>>>>>>>>>>  I
>>>>>>>>>>> get predictions that includes the ones with AED score of 1.00
>>>>>>>>>>> in
>>>>>>>>>>>  resulting
>>>>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3
>>>>>>>>>>> of
>>>>>>>>>>>  initial
>>>>>>>>>>> gff3 file.
>>>>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default is
>>>>>>>>>>>  eukaryotic
>>>>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this
>>>>>>>>>>> gff3
>>>>>>>>>>> file
>>>>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 =
>>>>>>>>>>> yes,
>>>>>>>>>>> 0
>>>>>>>>>>> =
>>>>>>> no
>>>>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes,
>>>>>>>>>>> 0
>>>>>>>>>>> =
>>>>>>>>>>> no
>>>>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes, 0
>>>>>>>=
>>>>>>>>>>>  no
>>>>>>>>>>> #-----MAKER Behavior Options
>>>>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed
>>>>>>>>>>> (bound
>>>>>>>>>>> by
>>>>>>> 0
>>>>>>>>>>> and 1)
>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to
>>>>>>>>>>>>be
>>>>>>>>>>>> partial
>>>>>>>>>>>> at
>>>>>>>>>>>>  best.  You should seriously consider using mRNAseq to capture
>>>>>>>>>>>> those
>>>>>>> by
>>>>>>>>>>>>  using maker's est_gff option to pass in results from
>>>>>>>>>>>> cufflinks
>>>>>>>>>>>>or
>>>>>>>>>>>> trinity.
>>>>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb
>>>>>>>>>>>>in
>>>>>>> size,
>>>>>>>>>>>> just
>>>>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>>>>> maker_opts.ctl file.
>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>  Carson
>>>>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>> wrote:
>>>>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>>>>with
>>>>>>> N50
>>>>>>>>>>>>>  of
>>>>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>>>>> reason
>>>>>>>>>>>>>  when
>>>>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>>>>> predicted
>>>>>>> despite the model_gff file has few genes with scores less than
>>>>>>> 0.75?
>>>>>>> Thanks and regards,
>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>>>>> contig.
>>>>>>>>>>>>> First
>>>>>>>>>>>>>  it seems to be repeat rich with a very low gene density.
>>>>>>>>>>>>> You
>>>>>>>>>>>>> also
>>>>>>>>>>>>> have
>>>>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>>>>> getting
>>>>>>> many
>>>>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>>>>> models
>>>>>>> that
>>>>>>>>>>>>> are
>>>>>>>>>>>>>  more than likely false positives or at the very least just a
>>>>>>>>>>>>> piece
>>>>>>>>>>>>> of
>>>>>>>>>>>>> a
>>>>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>>>>reason
>>>>>>>>>>>>>  unless
>>>>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).
>>>>>>>>>>>>> Your
>>>>>>>>>>>>>  protein
>>>>>>>>>>>>> alignments also seem to be few and far between.  You probably
>>>>>>>>>>>>> need
>>>>>>> to
>>>>>>>>>>>>> add
>>>>>>>>>>>>>  more proteins from a couple of related species, and you
>>>>>>>>>>>>> might
>>>>>>> consider
>>>>>>>>>>>>> using protein2genome rather than est2genome as a predictor if
>>>>>>>>>>>>>you
>>>>>>> are
>>>>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>>>>> produced
>>>>>>> models
>>>>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>>>>with
>>>>>>> the
>>>>>>>>>>>>> AED_threshold with such limited protein support does create
>>>>>>>>>>>>> an
>>>>>>> artificial
>>>>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>>>>  How many contigs do you have in total and what is the N50
>>>>>>>>>>>>> value
>>>>>>> for
>>>>>>>>>>>>> the
>>>>>>>>>>>>> assembly? If you have a large number of very short contigs,
>>>>>>>>>>>>>you
>>>>>>>>>>>>> will
>>>>>>>>>>>>>  get
>>>>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>>>>> contigs
>>>>>>>>>>>>>  and
>>>>>>>>>>>>> many contigs tend t be subtle rearrangements of other contigs
>>>>>>>>>>>>> just
>>>>>>> assembled in a slightly different way (so you can get bits and
>>>>>>> pieces
>>>>>>>>>>>>>  of
>>>>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>>>>  confounding
>>>>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>>>>> would
>>>>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>>>>  completeness
>>>>>>>>>>>>> as
>>>>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>>>>> statistics
>>>>>>>>>>>>> produced
>>>>>>>>>>>>>  is a percent of genes that are found complete (end to end)
>>>>>>>>>>>>> vs
>>>>>>> those
>>>>>>>>>>>>>  that
>>>>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend
>>>>>>>>>>>>>to
>>>>>>>>>>>>> be
>>>>>>> shorter
>>>>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>>>>CEGMA
>>>>>>> gives
>>>>>>>>>>>>>  a
>>>>>>>>>>>>> high partial percentage and a low complete percentage, then
>>>>>>>>>>>>> this
>>>>>>>>>>>>>  pattern
>>>>>>>>>>>>> can be expected to be even more exaggerated for other genes
>>>>>>>>>>>>> in
>>>>>>>>>>>>> the
>>>>>>> genome.
>>>>>>>>>>>>>  If your genome is highly fragmented or proteins do not align
>>>>>>>>>>>>> well
>>>>>>> then
>>>>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>>>>genomes
>>>>>>> end
>>>>>>>>>>>>>  up
>>>>>>>>>>>>> having extremely fragmented assemblies (on the order of
>>>>>>>>>>>>>100,000
>>>>>>> contigs),
>>>>>>>>>>>>>  and if they are distantly related to other annotated species
>>>>>>>>>>>>>few
>>>>>>>>>>>>> proteins
>>>>>>>>>>>>>  may align to the contigs because the introns in the
>>>>>>>>>>>>>alignments
>>>>>>> tend
>>>>>>>>>>>>>  to
>>>>>>>>>>>>> be
>>>>>>>>>>>>>  so long and exons so short that it pushes down the
>>>>>>>>>>>>> significance
>>>>>>> scores
>>>>>>>>>>>>> too
>>>>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if
>>>>>>>>>>>>> not
>>>>>>> only
>>>>>>>>>>>>>  way
>>>>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>>>score.
>>>>>>> The
>>>>>>>>>>>>> input gff3 file was provided to option model_pred(see
>>>>>>>>>>>>> attached
>>>>>>>>>>>>> file
>>>>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>>>>  least
>>>>>>>>>>>>>  5
>>>>>>>>>>>>> genes with AED score less than 0.75. However there were no
>>>>>>>>>>>>> genes
>>>>>>>>>>>>>  predicted
>>>>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have
>>>>>>>>>>>>> also
>>>>>>>>>>>>> attached
>>>>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if
>>>>>>>>>>>>>you
>>>>>>>>>>>>> just
>>>>>>>>>>>>> want
>>>>>>>>>>>>>  to restrict final gene models to close matches directly
>>>>>>>>>>>>>within
>>>>>>>>>>>>> maker.
>>>>>>>>>>>>> On
>>>>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>>>>> training
>>>>>>>>>>>>>  gene
>>>>>>>>>>>>> predictors, use the maker2zff script for generating a
>>>>>>>>>>>>> filtered
>>>>>>>>>>>>>  dataset
>>>>>>>>>>>>> for
>>>>>>>>>>>>>  SNAP training.  There are a number of filters available.
>>>>>>>>>>>>> Just
>>>>>>> call
>>>>>>>>>>>>>  the
>>>>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence" <dence at genetics.utah.edu>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>> Hi Parul,
>>>>>>>>>>>>> I think the way you described (with the maker_opts.ctl file)
>>>>>>>>>>>>>is
>>>>>>> how
>>>>>>>>>>>>> you
>>>>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>>>>> Daniel
>>>>>>>>>>>>> Daniel Ence
>>>>>>>>>>>>> Graduate Student
>>>>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>>>>> University of Utah
>>>>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>>>>> ________________________________________
>>>>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>>>  Kudtarkar
>>>>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>>>>> Also, are there any other parameters that are required when
>>>>>>> filtering
>>>>>>>>>>>>> based on AED score?
>>>>>>>>>>>>>  Hello Carson,
>>>>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>>>>> models
>>>>>>>>>>>>> at
>>>>>>>>>>>>> specific AED score.
>>>>>>>>>>>>>  Alternatively if I were to do this within maker with regards
>>>>>>> to
>>>>>>>>>>>>> parameters
>>>>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>> genes
>>>>>>>>>>>>> gff3
>>>>>>>>>>>>>  file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>>threshold?
>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best and
>>>>>>> 1
>>>>>>>>>>>>>  is
>>>>>>>>>>>>> worst
>>>>>>>>>>>>>  as
>>>>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>>>>> parameter
>>>>>>>>>>>>> to
>>>>>>>>>>>>>  require better matching to the evidence by setting it closer
>>>>>>> to
>>>>>>>>>>>>> 0.
>>>>>>>>>>>>> You
>>>>>>>>>>>>>  can
>>>>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>>>>> your
>>>>>>>>>>>>> calls
>>>>>>>>>>>>> may
>>>>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>>>>  --Carson
>>>>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>> Dear Maker community,
>>>>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>  based
>>>>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>>>>Augustus
>>>>>>> predictions, followed by boot-strapping. I would typically expect
>>>>>>> 20-30K
>>>>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>  indicating
>>>>>>>>>>>>>  too
>>>>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>>>>> predication/script to retain predictions with AED score 1 and
>>>>>>>>>>>>> if
>>>>>>>>>>>>> yes
>>>>>>>>>>>>> how
>>>>>>>>>>>>> to go about this?
>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>> -l
>>>>>>>>>>>>> ab
>>>>>>>>>>>>> .o
>>>>>>>>>>>>> rg
>>>>>>>>>>>>>  --
>>>>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>>-l
>>>>>>>>>>>>>a
>>>>>>> b.
>>>>>>>>>>>>> or
>>>>>>>>>>>>> g
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>>-l
>>>>>>>>>>>>>a
>>>>>>> b.
>>>>>>>>>>>>> or
>>>>>>>>>>>>> g
>>>>>>>>>>>>>  _______________________________________________
>>>>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>>>>>
>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell
>>>>>>>>>>>>>-l
>>>>>>>>>>>>>ab
>>>>>>> .o
>>>>>>>>>>>>> rg
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>> --
>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>> --
>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>> http://www.spbase.org
>>>>>>>>> --
>>>>>>>>> Scientific Programmer
>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>> Beckman Institute,
>>>>>>>>> California Institute of Technology
>>>>>>>>> http://www.spbase.org
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>>
>>>>>>> --
>>>>>>> Scientific Programmer
>>>>>>> Center for Computational Regulatory Genomics
>>>>>>> Beckman Institute,
>>>>>>> California Institute of Technology
>>>>>>> http://www.spbase.org
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Scientific Programmer
>>>>> Center for Computational Regulatory Genomics
>>>>> Beckman Institute,
>>>>> California Institute of Technology
>>>>> http://www.spbase.org
>>>>>
>>>>
>>>>
>>>>--
>>>>Scientific Programmer
>>>>Center for Computational Regulatory Genomics
>>>>Beckman Institute,
>>>>California Institute of Technology
>>>>http://www.spbase.org
>>>>
>>>
>>>
>>>
>>
>>
>>--
>>Scientific Programmer
>>Center for Computational Regulatory Genomics
>>Beckman Institute,
>>California Institute of Technology
>>http://www.spbase.org
>>
>
>
>


--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org




From carsonhh at gmail.com  Fri Dec 14 14:17:55 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 14 Dec 2012 16:17:55 -0500
Subject: [maker-devel] AED score
In-Reply-To: <4575.131.215.15.234.1355437013.squirrel@webmail.caltech.edu>
Message-ID: <CCF100EF.170E7%carsonhh@gmail.com>

You can either train with cegma first and then train a second time with
the protein2genome calls, or combine the cegma and protein2genome ZFF
files (from maker2zff and cegma2zff), then use that one file to generate
the training data for augustus.  Augustus allows you to keep training, so
rather than training a new species each time, you can specify an existing
species you trained before, and then refine the existing model using the
additional training data.

--Carson



On 12-12-13 5:16 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:

>Dear Carson,
>
>Could you please advice how to combine results from protein2genome
>derived models and cegma based training to be provided as training species
>for augustus or are theses supposed to be run as separate maker2 run(i.e.
>run maker2 with training set from protein2genome first followed by
>cegma-based training set)
>
>Thanks and regards,
>Parul
>
>> Thanks Parul.  If you need any more help, just let us know.
>>
>> --Carson
>>
>>
>>
>> On 12-12-10 10:28 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>
>>>Dear Carson, Thanks a lot for detailed explanation and all the help with
>>>running and understanding maker2.
>>>
>>>
>>>> Yes.  Lamprey is not a good match for sea urchin.  When training
>>>>Augusuts
>>>> you can sometimes use other genomes as starting points and let
>>>>Augustus
>>>> then modify that species to match the models you provided, which can
>>>>be
>>>> better than de novo training under certain circumstances. But given
>>>>sea
>>>> urchin's evolutionary distance from all the other species bundled with
>>>> augustus, its probably not a good starting point.  So protein2genome
>>>> derived models and cegma based training are probably your best
>>>>options.
>>>>
>>>> --Carson
>>>>
>>>>
>>>> On 12-12-07 8:09 PM, "Parul Kudtarkar" <parulk at caltech.edu> wrote:
>>>>
>>>>>Sorry for not checking this before, just to answer my own question I
>>>>>just
>>>>>found after reading augustus documentation that autoAugTrain.pl should
>>>>>work for generating training dataset for Augustus from using the
>>>>>gene-model hints from first pass run of maker and using
>>>>>http://sourceforge.net/mailarchive/message.php?msg_id=29361270 script
>>>>> to
>>>>>generate training.gb
>>>>>
>>>>>autoAugTrain.pl [OPTIONS] --species=sname --trainingset=training.gb
>>>>>
>>>>>I believe should work better than using lamprey to train augustus.
>>>>>
>>>>>Thanks and regards,
>>>>>Parul Kudtarkar
>>>>>
>>>>>> Dear Carson,
>>>>>>
>>>>>> Thanks for detailed explanation and help. Now we know the exact
>>>>>>parameters
>>>>>> that should help us with generating good gene-model.
>>>>>>
>>>>>> The genome for which we are working on gene predictions is
>>>>>> Echinoderm(sea-urchin). lamprey was the closest organism for
>>>>>>training
>>>>>> augustus that I could find. A quick question for training augustus,
>>>>>>there
>>>>>> is augustus_species option how would you go from training data
>>>>>> generated
>>>>>> by zff2augustus_gbk.pl > train.gb as specified here
>>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270 to
>>>>>> generating the species folder that can be specified to
>>>>>>augustus_species
>>>>>> option.
>>>>>>
>>>>>> The average expected gene-length in our case is ~15kb.
>>>>>> We also have a good repeat library for our genome.
>>>>>>
>>>>>> Thanks and regards,
>>>>>> Parul Kudtarkar
>>>>>>
>>>>>>> For step 2 and 3, use lamprey rather than human in augustus.  For
>>>>>>>some
>>>>>>> reason the current version of augustus doesn't diplay it as an
>>>>>>> option
>>>>>>> for
>>>>>>> the species help menu (so I didn't see it), but it's there in
>>>>>>> ?/augustus/config/species/lamprey
>>>>>>>
>>>>>>> For any additional training, make copies into
>>>>>>> ?/augustus/config/species/lamprey2 and
>>>>>>> ?/augustus/config/species/lamprey3
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> From:  Carson Holt <carsonhh at gmail.com>
>>>>>>> Date:  Friday, 7 December, 2012 10:22 AM
>>>>>>> To:  Daniel Ence <dence at genetics.utah.edu>,
>>>>>>> "maker-devel at yandell-lab.org"
>>>>>>> <maker-devel at yandell-lab.org>, Parul Kudtarkar <parulk at caltech.edu>
>>>>>>> Subject:  Re: [maker-devel] AED score
>>>>>>>
>>>>>>> Just to add to Daniels comments.
>>>>>>>
>>>>>>> Things to change in step 1:
>>>>>>>> protein= <just try and add more protein evidence in general>
>>>>>>>> est2genome=0
>>>>>>>> protein2genome=1
>>>>>>>> split_hit=20000
>>>>>>>> min_contig=50000
>>>>>>>
>>>>>>> Reasoning:
>>>>>>>> Your ESTs are very short especially if this is a lamprey species
>>>>>>>> which
>>>>>>>> have
>>>>>>>> very long introns and really short exons.  In lamprey (i.e.
>>>>>>>> Petromyzon
>>>>>>>> marinus), genes tend to be very long (remember gene lengths
>>>>>>>>include
>>>>>>>> introns
>>>>>>>> and UTR and is not just the size of the coding sequence), so
>>>>>>>> contigs
>>>>>>>> shorter
>>>>>>>> than 50kb are useless for training as you are unlikely to get nice
>>>>>>>> complete
>>>>>>>> gene models on those.  Also lampreys have very long introns, so
>>>>>>>>you
>>>>>>>> have
>>>>>>>> to
>>>>>>>> allow for bigger introns in alignments (split_hit parameter).
>>>>>>>> Finally
>>>>>>>> add as
>>>>>>>> much protein evidence from as many sources as possible.  Your
>>>>>>>>maker
>>>>>>>> training
>>>>>>>> run will take a long time as proteins take forever to align, but
>>>>>>>> because
>>>>>>>> of
>>>>>>>> the evolutionary distance of lamprey from everything else and the
>>>>>>>>short
>>>>>>>> exon
>>>>>>>> structure of its genome, very little aligns directly to its genome
>>>>>>>>from
>>>>>>>> other
>>>>>>>> deuterstome and vertebrate species.  I'm assuming this is a
>>>>>>>>lamprey
>>>>>>>> species
>>>>>>>> because of what you said about the  augustus species file you are
>>>>>>>> using.
>>>>>>>> Really the only thing closely related to lampreys unfortunately
>>>>>>>>are
>>>>>>>> other
>>>>>>>> lampreys.  Lancelets, hagfish, and sharks are not closely related
>>>>>>>> to
>>>>>>>> lamprey
>>>>>>>> (while they branch closely together on the tree of life, there are
>>>>>>>> too
>>>>>>>> many
>>>>>>>> years since the last common ancestor).  So while they may have
>>>>>>>> similar
>>>>>>>> issues
>>>>>>>> related to annotation (long introns and short exons etc.) they
>>>>>>>>will
>>>>>>>>not
>>>>>>>> really
>>>>>>>> match that well for the gene predictor or even protein alignments.
>>>>>>>
>>>>>>> Additional note:
>>>>>>>> I have training files for the lamprey species Petromyzon marinus
>>>>>>>> for
>>>>>>>> both
>>>>>>>> Augustus and SNAP that I could share with you in a few week, when
>>>>>>>>the
>>>>>>>> genome
>>>>>>>> publication is is released.  But before that happens, new gene
>>>>>>>>models
>>>>>>>> will be
>>>>>>>> available  through the UCSC browser (hopefully within a couple of
>>>>>>>> weeks), and
>>>>>>>> gene models are already available through ENSEMBL.  Get those
>>>>>>>>protein
>>>>>>>> files
>>>>>>>> for training, it may be a big help for you.  If you want early
>>>>>>>>access
>>>>>>>> to
>>>>>>>> the
>>>>>>>> lamprey training files for Augustus and SNAP, you would have to
>>>>>>>>request
>>>>>>>> it
>>>>>>>> from Weiming Li at Michigan State University (the head of that
>>>>>>>>genome
>>>>>>>> project).
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Things to change in step 2:
>>>>>>>> Optimally you would be doing de novo training using mRNAseq
>>>>>>>> results,
>>>>>>>> but
>>>>>>>> with
>>>>>>>> on;ly sparse protein alignments and such a fragmented assembly,
>>>>>>>>you
>>>>>>>>are
>>>>>>>> probably better off just trying to adapt the human HMM files.
>>>>>>>>They
>>>>>>>> won't
>>>>>>>> match that well, but you probably won't have the evidence for De
>>>>>>>>Novo
>>>>>>>> training.  First make a copy of the augustus human species
>>>>>>>> directory
>>>>>>>> and
>>>>>>>> rename it to lamprey (cp -R  ?/augustus/config/species/human
>>>>>>>> ?/augustus/config/species/lamprey).  Use it as the base species
>>>>>>>>for
>>>>>>>> retraining
>>>>>>>> augustus using your new models.  You will have to edit multiple
>>>>>>>>files
>>>>>>>> in
>>>>>>>> the
>>>>>>>> directory after you copy it so that they no longer say human or
>>>>>>>> homo
>>>>>>>> sapiens
>>>>>>>> internally or in the file name.  Use maker2zff to generate the
>>>>>>>>filtered
>>>>>>>> ZFF
>>>>>>>> file for training SNAP, but don't train SNAP.  Rather use the
>>>>>>>> training
>>>>>>>> file to
>>>>>>>> better train Augustus info here (just ignore the CEGMA part) -->
>>>>>>>> http://sourceforge.net/mailarchive/message.php?msg_id=29361270
>>>>>>>>
>>>>>>>> MAKE a backup of the step 1 maker output directory and run step 2
>>>>>>>> in
>>>>>>>> the
>>>>>>>> old
>>>>>>>> step 1 directory (this allows you to change the parameters and
>>>>>>>> reuse
>>>>>>>> files
>>>>>>>> form step 1 so you don't have to recalculate all the protein and
>>>>>>>> EST
>>>>>>>> alignments).  So control files for step 2 are identical to step 1
>>>>>>>> except
>>>>>>>> for
>>>>>>>> these parameters.
>>>>>>>>
>>>>>>>> protein2genome=0
>>>>>>>> augustus_species=lamprey
>>>>>>>> snaphmm=lamprey.hmm #optional if you decide to use SNAP
>>>>>>>>
>>>>>>>> Don't both training SNAP here as you probably won't have enough
>>>>>>>> data
>>>>>>>> and
>>>>>>>> you
>>>>>>>> assembly is too fragmented for it to work well, so just stick to
>>>>>>>> augustus.
>>>>>>>> Try SNAP if you want just to see how well it works.  Manually open
>>>>>>>>up
>>>>>>>> the
>>>>>>>> largest contigs in a viewer to look at the models produced from
>>>>>>>>the
>>>>>>>> MAKER run
>>>>>>>> to see if they look reasonable (this will also help you decide
>>>>>>>> whether
>>>>>>>> to keep
>>>>>>>> SNAP).
>>>>>>>>
>>>>>>>
>>>>>>> Things to change in step 3:
>>>>>>>> Step 3 should just be a clone of step 2 as it is bootstrapping.
>>>>>>>> But
>>>>>>>> make
>>>>>>>> copies of ?/augustus/config/species/lamprey and save it to
>>>>>>>> ?/augustus/config/species/lamprey2 (editing all the files and
>>>>>>>>names
>>>>>>>> as
>>>>>>>> you did
>>>>>>>> in step 2). This way you don't loose that training data if you
>>>>>>>>decide
>>>>>>>> to
>>>>>>>> step
>>>>>>>> back.  Also Give your SNAP HMM a new name (I.e. lamprey2.hmm)
>>>>>>>>
>>>>>>>> augustus_species=lamprey2
>>>>>>>> snaphmm=lamprey2.hmm  #optional if you decide to use SNAP
>>>>>>>>
>>>>>>>> Make a backup of Step 2 and run step 3 in the old Step 2 directory
>>>>>>>> (This
>>>>>>>> is
>>>>>>>> for file reuse, so the step will run fast).  This must be the
>>>>>>>>exact
>>>>>>>> same
>>>>>>>> step
>>>>>>>> directory as step 2 for the reuse trick to work.
>>>>>>>>
>>>>>>>> Manually review the models and if you are satisfied move to step
>>>>>>>>4.
>>>>>>>> Also note
>>>>>>>> that most parameters including the protein, EST, and repeats
>>>>>>>>should
>>>>>>>>not
>>>>>>>> change
>>>>>>>> from step1-step3, and should not be removed for step 4 either, you
>>>>>>>> can
>>>>>>>> add
>>>>>>>> more evidence, but don't remove evidence (like the repeats).
>>>>>>>>
>>>>>>>>
>>>>>>> Things to change in step 4:
>>>>>>>> For this step, just set min_contig=10000 and rerun MAKER inside
>>>>>>>>the
>>>>>>>> step
>>>>>>>> 3
>>>>>>>> directory to get the smaller contigs annotated.  This should be
>>>>>>>> your
>>>>>>>> final
>>>>>>>> step, although you can try altering other parameters or adding
>>>>>>>>more
>>>>>>>> evidence
>>>>>>>> sources here etc.
>>>>>>>>
>>>>>>>>
>>>>>>> For other things to keep in mind, you should consider taking extra
>>>>>>> time
>>>>>>> to
>>>>>>> build a comprehensive library of repeats for your species, I know
>>>>>>>that
>>>>>>> Petromyzon marinus was virtually unannotatable until we had a very
>>>>>>> deep
>>>>>>> repeat library built for it.  Any repeat library should be used in
>>>>>>>all
>>>>>>> steps.  Also for lamprey, you will expect between 20,000-30,000
>>>>>>> genes
>>>>>>> both
>>>>>>> because of your assemblies fragmentation and because of some
>>>>>>>ancestral
>>>>>>> genome duplication.  Also be aware that lampreys appear to undergo
>>>>>>> programmed genome loss in somatic tissues, so any gene count you
>>>>>>>get
>>>>>>> is
>>>>>>> only
>>>>>>> going to represent a maximum of 75-80% of all genes unless the
>>>>>>> assembly
>>>>>>> is
>>>>>>> derived from germline tissue.
>>>>>>>
>>>>>>> Thanks,
>>>>>>> Carson
>>>>>>>
>>>>>>>
>>>>>>>>
>>>>>>> On 12-12-06 2:17 PM, "Daniel Ence" <dence at genetics.utah.edu> wrote:
>>>>>>>
>>>>>>>> Hi Parul,
>>>>>>>>
>>>>>>>> In step one, if protein2genome isn't turned on, then the protein
>>>>>>>> alignments
>>>>>>>> wont be used to generate gene models. Carson said before to use
>>>>>>>> protein2genome
>>>>>>>> to generate gene models for your trainings set, but you should
>>>>>>>>know
>>>>>>>> that
>>>>>>>> those
>>>>>>>> data aren't being used right now.
>>>>>>>>
>>>>>>>> In step 2, you can include the est and protein evidence that you
>>>>>>>>used
>>>>>>>> in
>>>>>>>> step
>>>>>>>> one, and the ab-initio predictors will takes those data as hints
>>>>>>>>to
>>>>>>>> guide
>>>>>>>> their predictions. Also, are you reannotating human here? I'm just
>>>>>>>> wondering
>>>>>>>> why the snap file is called Pult, but the augustus species model
>>>>>>>>is
>>>>>>>> human.
>>>>>>>> Also, I think you should include the same masking files from step
>>>>>>>> 1,
>>>>>>>> otherwise
>>>>>>>> the ab-initio predictors will be predicting on the unmasked
>>>>>>>> sequence
>>>>>>>> which
>>>>>>>> will give you many spurious predictions.
>>>>>>>>
>>>>>>>> In step 3, I'm not certain what you mean by boot-strapping. The
>>>>>>>>control
>>>>>>>> file
>>>>>>>> you sent for step 3 will just pass-through all of the data from
>>>>>>>>before.
>>>>>>>>
>>>>>>>> In step 4, I think what you'll get is pretty close to what you
>>>>>>>> already
>>>>>>>> had in
>>>>>>>> step 3. The gene models from step 3 are already based on the est
>>>>>>>> and
>>>>>>>> protein
>>>>>>>> data from step 1, so without giving any different evidence or
>>>>>>>>ab-initio
>>>>>>>> predictors, I think that you will just get the same gene models
>>>>>>>> that
>>>>>>>> you
>>>>>>>> got
>>>>>>>> from step 3. Those gene models are what you should be using to
>>>>>>>> train
>>>>>>>> snap.
>>>>>>>> Also, is this the same genome as in the other steps? The genome
>>>>>>>> file
>>>>>>>> here is
>>>>>>>> called genome.linear.fa, but before it was called genome.fa.
>>>>>>>>
>>>>>>>> Step 5. So maker uses both evidence and ab-initio predictions to
>>>>>>>>create
>>>>>>>> models. If you don't give any evidence (EST or protein) maker will
>>>>>>>> not
>>>>>>>> annotate any gene models. You have also changed the augustus
>>>>>>>> species
>>>>>>>> model in
>>>>>>>> this step, but I don't know what you've gained by going from one
>>>>>>>> species
>>>>>>>> to
>>>>>>>> another. You should be training augustus with the gene models and
>>>>>>>> then
>>>>>>>> creating a new species model in augustus. As I understand it, the
>>>>>>>> filter
>>>>>>>> only
>>>>>>>> operates on gene models, not ab-initio predictions or alignments,
>>>>>>>> so
>>>>>>>>it
>>>>>>>> probably isn't doing anything the way you have it set.
>>>>>>>>
>>>>>>>> Step 6. I think step 5 and 6 should be combined. I don't know what
>>>>>>>> you
>>>>>>>> mean by
>>>>>>>> boot-strapping here too.
>>>>>>>>
>>>>>>>> Hopefully that clears up some of the confusion with how maker
>>>>>>>> works.
>>>>>>>> Carson
>>>>>>>> will probably have a lot of suggestions too.
>>>>>>>>
>>>>>>>> Thanks,
>>>>>>>> Daniel
>>>>>>>>
>>>>>>>> Daniel Ence
>>>>>>>> Graduate Student
>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>> University of Utah
>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>> ________________________________________
>>>>>>>> From: Parul Kudtarkar [parulk at caltech.edu]
>>>>>>>> Sent: Thursday, December 06, 2012 10:08 AM
>>>>>>>> To: carsonhh at gmail.com
>>>>>>>> Cc: Daniel Ence; maker-devel at yandell-lab.org
>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>
>>>>>>>> Hi Carson,
>>>>>>>>
>>>>>>>> Once again thanks for a quick response. We expect to get 25,000 to
>>>>>>>> 30,000
>>>>>>>> genes.
>>>>>>>> Here are the step
>>>>>>>> Step1. EST and proteins are used to predict gene-models. the
>>>>>>>> resulting
>>>>>>>> file is used as training data-set for SNAP in step2. est2genome is
>>>>>>>> turned
>>>>>>>> ON
>>>>>>>> Step2. Augustus and SNAP is used to predict genes.
>>>>>>>> Step3. The results are re-annoated(boot-strap)
>>>>>>>> Step4. EST and proteins are used to predict gene-models. The gff
>>>>>>>>file
>>>>>>>> from
>>>>>>>> step3. is used as model_gff. The resulting file is used as
>>>>>>>>training
>>>>>>>> data-set for SNAP in step2
>>>>>>>> Step 5. Augustus and SNAP is used to predict genes. with AED set
>>>>>>>>to
>>>>>>>>0.5
>>>>>>>> Step6. The results are re-annoated(boot-strap) with AED set to 0.5
>>>>>>>> and
>>>>>>>> contig_size to 10kb
>>>>>>>>
>>>>>>>> Thanks and regards,
>>>>>>>> Parul Kudtarkar
>>>>>>>>
>>>>>>>> I have attached the configuration file for each step.
>>>>>>>>>  Your output has no genes.  They've all been filtered out.  The
>>>>>>>>>gene
>>>>>>>> predictions are left for reference purposes, but there are no gene
>>>>>>>> models
>>>>>>>>>  in the file.  You need to look at the type columns in the GFF3
>>>>>>>>>file
>>>>>>>>> -->
>>>>>>>> match/match_part features are evidence and reference data but not
>>>>>>>> models.
>>>>>>>>>  All models will have types gene/mRNA/exon/CDS.  For example if
>>>>>>>>> you
>>>>>>>>> just
>>>>>>>> want gene models in your file you can use the gff3_merge script
>>>>>>>> with
>>>>>>>> the
>>>>>>>> -g option, and it will only print out the gene models.
>>>>>>>>>  I think you may be misinterpreting what is happening at
>>>>>>>>>different
>>>>>>>>> steps,
>>>>>>>> as well as how to read the result files.  Could you give me a
>>>>>>>> detailed
>>>>>>>> explanation of what you expect to get back together with your
>>>>>>>>control
>>>>>>>> files and I can walk you through the configuration, and indicate
>>>>>>>>what
>>>>>>>> to
>>>>>>>> expect.  Also what was the report like from CEGMA. Could you
>>>>>>>> include
>>>>>>>> the
>>>>>>>> report file that shows how complete your genome is and how
>>>>>>>>fragmented
>>>>>>>> it
>>>>>>>> is?
>>>>>>>>>  Thanks,
>>>>>>>>>  Carson
>>>>>>>>>  On 12-12-05 3:03 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>> wrote:
>>>>>>>>>> Dear Carson,
>>>>>>>>>> Thanks for a quick response. keep_preds is set to 0
>>>>>>>>>> Though for previous step(ab-intio gene predictions keep_preds
>>>>>>>>>>was
>>>>>>>>>>set
>>>>>>>>>> to
>>>>>>>> 1, see Scaffold1_input.gff). I have also attached the output file
>>>>>>>> Scaffold1_out.gff.
>>>>>>>>>> Please advice.
>>>>>>>>>> Thanks and regards,
>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>  You should always get all predictions, but should only get
>>>>>>>>>>>models
>>>>>>>> (match/match_part) with AED scores less than 0.5.  You should
>>>>>>>>never
>>>>>>>>get
>>>>>>>>>>>  models (gene/mRNA/CDS) with an AED score of 1.00 unless you
>>>>>>>>>>> have
>>>>>>>> keep_preds set.
>>>>>>>>>>>  Do you have keeps_preds set or gene models with AED values
>>>>>>>>>>> above
>>>>>>>>>>> your
>>>>>>>> threshold (not match/match_part features)?  If the first one is
>>>>>>>>the
>>>>>>>>>>> case,
>>>>>>>>>>>  just set it to 0.  If the second one in the case, could you
>>>>>>>>>>> send
>>>>>>>>>>>me
>>>>>>>> example GFF3?
>>>>>>>>>>>  Thanks,
>>>>>>>>>>>  Carson
>>>>>>>>>>>  On 12-12-04 7:27 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>> wrote:
>>>>>>>>>>>> Dear Carson,
>>>>>>>>>>>> Thanks once again, we have limited experimental data with very
>>>>>>>>>>>> short
>>>>>>>>>>>>  ESTs.
>>>>>>>>>>>> CEGMA is useful for us to gauge our gene-model.
>>>>>>>>>>>> On a different note to re-annotate genome(post evidence based
>>>>>>>>>>>> prediction(used as training dataset)and abinitio
>>>>>>>>>>>> gene-prediction).
>>>>>>>> Here
>>>>>>>>>>>> are the control parameters I am using with AED score set to
>>>>>>>>>>>> 0.5,
>>>>>>>>>>>>  however
>>>>>>>>>>>>  I
>>>>>>>>>>>> get predictions that includes the ones with AED score of 1.00
>>>>>>>>>>>> in
>>>>>>>>>>>>  resulting
>>>>>>>>>>>> gff3 file. Though I do see the number of genes reduced to 1/3
>>>>>>>>>>>> of
>>>>>>>>>>>>  initial
>>>>>>>>>>>> gff3 file.
>>>>>>>>>>>> #-----Genome (Required for De-Novo Annotation)
>>>>>>>>>>>> genome=Scaffold1.fa #genome sequence file in fasta format
>>>>>>>>>>>> organism_type=eukaryotic #eukaryotic or prokaryotic. Default
>>>>>>>>>>>>is
>>>>>>>>>>>>  eukaryotic
>>>>>>>>>>>> #-----Re-annotation Using MAKER Derived GFF3
>>>>>>>>>>>> genome_gff= Scaffold1.gff #re-annotate genome based on this
>>>>>>>>>>>> gff3
>>>>>>>>>>>> file
>>>>>>>> est_pass=1 #use ests in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>>> altest_pass=0 #use alternate organism ests in genome_gff: 1 =
>>>>>>>>>>>> yes,
>>>>>>>>>>>> 0
>>>>>>>>>>>> =
>>>>>>>> no
>>>>>>>>>>>> protein_pass=1 #use proteins in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>>> rm_pass=0 #use repeats in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>>> model_pass=1 #use gene models in genome_gff: 1 = yes, 0 = no
>>>>>>>>>>>> pred_pass=1 #use ab-initio predictions in genome_gff: 1 = yes,
>>>>>>>>>>>> 0
>>>>>>>>>>>> =
>>>>>>>>>>>> no
>>>>>>>> other_pass=0 #passthrough everything else in genome_gff: 1 = yes,
>>>>>>>>0
>>>>>>>>=
>>>>>>>>>>>>  no
>>>>>>>>>>>> #-----MAKER Behavior Options
>>>>>>>>>>>> AED_threshold=0.5 #Maximum Annotation Edit Distance allowed
>>>>>>>>>>>> (bound
>>>>>>>>>>>> by
>>>>>>>> 0
>>>>>>>>>>>> and 1)
>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>  Wow 330,000 is a lot. a large portion of genes are likely to
>>>>>>>>>>>>>be
>>>>>>>>>>>>> partial
>>>>>>>>>>>>> at
>>>>>>>>>>>>>  best.  You should seriously consider using mRNAseq to
>>>>>>>>>>>>>capture
>>>>>>>>>>>>> those
>>>>>>>> by
>>>>>>>>>>>>>  using maker's est_gff option to pass in results from
>>>>>>>>>>>>> cufflinks
>>>>>>>>>>>>>or
>>>>>>>>>>>>> trinity.
>>>>>>>>>>>>>   Also I wouldn't even try to annotate contigs less than 10kb
>>>>>>>>>>>>>in
>>>>>>>> size,
>>>>>>>>>>>>> just
>>>>>>>>>>>>>  have maker skip them by setting the min_contig filter in the
>>>>>>>> maker_opts.ctl file.
>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>  On 12-11-29 7:31 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>> Thanks for the guidance Carson, total contig size is 330,611
>>>>>>>>>>>>>>with
>>>>>>>> N50
>>>>>>>>>>>>>>  of
>>>>>>>>>>>>>> 39.17kb. I agree we have short ESTs. So this is the possible
>>>>>>>>>>>>>> reason
>>>>>>>>>>>>>>  when
>>>>>>>>>>>>>> filtering based on AED score 0.75 there are no gene models
>>>>>>>>>>>>>> predicted
>>>>>>>> despite the model_gff file has few genes with scores less than
>>>>>>>> 0.75?
>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>>  There are certain characteristics that are apparent in this
>>>>>>>> contig.
>>>>>>>>>>>>>> First
>>>>>>>>>>>>>>  it seems to be repeat rich with a very low gene density.
>>>>>>>>>>>>>> You
>>>>>>>>>>>>>> also
>>>>>>>>>>>>>> have
>>>>>>>>>>>>>> very short ESTs, and because of the lengths you are probably
>>>>>>>>>>>>>> getting
>>>>>>>> many
>>>>>>>>>>>>>>  of them to align spuriously which produces very short gene
>>>>>>>>>>>>>> models
>>>>>>>> that
>>>>>>>>>>>>>> are
>>>>>>>>>>>>>>  more than likely false positives or at the very least just
>>>>>>>>>>>>>>a
>>>>>>>>>>>>>> piece
>>>>>>>>>>>>>> of
>>>>>>>>>>>>>> a
>>>>>>>>>>>>>> gene.  I would turn off est2genome as a predictor for this
>>>>>>>>>>>>>>reason
>>>>>>>>>>>>>>  unless
>>>>>>>>>>>>>> you can get longer EST assemblies (i.e. From mRNAseq).
>>>>>>>>>>>>>> Your
>>>>>>>>>>>>>>  protein
>>>>>>>>>>>>>> alignments also seem to be few and far between.  You
>>>>>>>>>>>>>>probably
>>>>>>>>>>>>>> need
>>>>>>>> to
>>>>>>>>>>>>>> add
>>>>>>>>>>>>>>  more proteins from a couple of related species, and you
>>>>>>>>>>>>>> might
>>>>>>>> consider
>>>>>>>>>>>>>> using protein2genome rather than est2genome as a predictor
>>>>>>>>>>>>>>if
>>>>>>>>>>>>>>you
>>>>>>>> are
>>>>>>>>>>>>>> still working to generate a training set. Also est2genome
>>>>>>>>>>>>>> produced
>>>>>>>> models
>>>>>>>>>>>>>>  almost always have an AED score near 0 so mixing est2genome
>>>>>>>>>>>>>>with
>>>>>>>> the
>>>>>>>>>>>>>> AED_threshold with such limited protein support does create
>>>>>>>>>>>>>> an
>>>>>>>> artificial
>>>>>>>>>>>>>>  bias to get back very short and incomplete models.
>>>>>>>>>>>>>>  How many contigs do you have in total and what is the N50
>>>>>>>>>>>>>> value
>>>>>>>> for
>>>>>>>>>>>>>> the
>>>>>>>>>>>>>> assembly? If you have a large number of very short contigs,
>>>>>>>>>>>>>>you
>>>>>>>>>>>>>> will
>>>>>>>>>>>>>>  get
>>>>>>>>>>>>>> very inflated gene counts because you get genes split across
>>>>>>>>>>>>>> contigs
>>>>>>>>>>>>>>  and
>>>>>>>>>>>>>> many contigs tend t be subtle rearrangements of other
>>>>>>>>>>>>>>contigs
>>>>>>>>>>>>>> just
>>>>>>>> assembled in a slightly different way (so you can get bits and
>>>>>>>> pieces
>>>>>>>>>>>>>>  of
>>>>>>>>>>>>>> the same genes just rearranged).  This scenario is another
>>>>>>>>>>>>>>  confounding
>>>>>>>>>>>>>> factor if using the est2genome predictor with short ESTs.  I
>>>>>>>>>>>>>> would
>>>>>>>> recommend running CEGMA to get an estimate for the genome
>>>>>>>>>>>>>>  completeness
>>>>>>>>>>>>>> as
>>>>>>>>>>>>>>  well as get an estimate of fragmentation as one of the
>>>>>>>>>>>>>> statistics
>>>>>>>>>>>>>> produced
>>>>>>>>>>>>>>  is a percent of genes that are found complete (end to end)
>>>>>>>>>>>>>> vs
>>>>>>>> those
>>>>>>>>>>>>>>  that
>>>>>>>>>>>>>> are partial.  CEGMA identifies house keeping genes that tend
>>>>>>>>>>>>>>to
>>>>>>>>>>>>>> be
>>>>>>>> shorter
>>>>>>>>>>>>>>  and less intron rich than other genes in the genome, so if
>>>>>>>>>>>>>>CEGMA
>>>>>>>> gives
>>>>>>>>>>>>>>  a
>>>>>>>>>>>>>> high partial percentage and a low complete percentage, then
>>>>>>>>>>>>>> this
>>>>>>>>>>>>>>  pattern
>>>>>>>>>>>>>> can be expected to be even more exaggerated for other genes
>>>>>>>>>>>>>> in
>>>>>>>>>>>>>> the
>>>>>>>> genome.
>>>>>>>>>>>>>>  If your genome is highly fragmented or proteins do not
>>>>>>>>>>>>>>align
>>>>>>>>>>>>>> well
>>>>>>>> then
>>>>>>>>>>>>>> there are other strategies.  For example, some vertebrate
>>>>>>>>>>>>>>genomes
>>>>>>>> end
>>>>>>>>>>>>>>  up
>>>>>>>>>>>>>> having extremely fragmented assemblies (on the order of
>>>>>>>>>>>>>>100,000
>>>>>>>> contigs),
>>>>>>>>>>>>>>  and if they are distantly related to other annotated
>>>>>>>>>>>>>>species
>>>>>>>>>>>>>>few
>>>>>>>>>>>>>> proteins
>>>>>>>>>>>>>>  may align to the contigs because the introns in the
>>>>>>>>>>>>>>alignments
>>>>>>>> tend
>>>>>>>>>>>>>>  to
>>>>>>>>>>>>>> be
>>>>>>>>>>>>>>  so long and exons so short that it pushes down the
>>>>>>>>>>>>>> significance
>>>>>>>> scores
>>>>>>>>>>>>>> too
>>>>>>>>>>>>>>  much.  In those cases heavy mRNAseq seems to be the best if
>>>>>>>>>>>>>> not
>>>>>>>> only
>>>>>>>>>>>>>>  way
>>>>>>>>>>>>>> to get enough evidence to stitch gene models together.
>>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>>  On 12-11-28 4:40 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>> Dear Carson and Daniel,
>>>>>>>>>>>>>> Thanks. I ran sample file for filtering genes based on AED
>>>>>>>>>>>>>>score.
>>>>>>>> The
>>>>>>>>>>>>>> input gff3 file was provided to option model_pred(see
>>>>>>>>>>>>>> attached
>>>>>>>>>>>>>> file
>>>>>>>> Scaffold1.gff), the cutoff AED score was set to 0.75. There are at
>>>>>>>>>>>>>>  least
>>>>>>>>>>>>>>  5
>>>>>>>>>>>>>> genes with AED score less than 0.75. However there were no
>>>>>>>>>>>>>> genes
>>>>>>>>>>>>>>  predicted
>>>>>>>>>>>>>> in the output file(see attached file Scaffold1_out). I have
>>>>>>>>>>>>>> also
>>>>>>>>>>>>>> attached
>>>>>>>>>>>>>> the maker_opts.ctl. Could you please advice on this.
>>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>>  Use the AED_threshold option in the maker_opts.ctl file if
>>>>>>>>>>>>>>you
>>>>>>>>>>>>>> just
>>>>>>>>>>>>>> want
>>>>>>>>>>>>>>  to restrict final gene models to close matches directly
>>>>>>>>>>>>>>within
>>>>>>>>>>>>>> maker.
>>>>>>>>>>>>>> On
>>>>>>>>>>>>>>  the other hand, if you are trying to build a dataset for
>>>>>>>> training
>>>>>>>>>>>>>>  gene
>>>>>>>>>>>>>> predictors, use the maker2zff script for generating a
>>>>>>>>>>>>>> filtered
>>>>>>>>>>>>>>  dataset
>>>>>>>>>>>>>> for
>>>>>>>>>>>>>>  SNAP training.  There are a number of filters available.
>>>>>>>>>>>>>> Just
>>>>>>>> call
>>>>>>>>>>>>>>  the
>>>>>>>>>>>>>> script once without parameters to see the options.
>>>>>>>>>>>>>>  Thanks,
>>>>>>>>>>>>>>  Carson
>>>>>>>>>>>>>>  On 12-11-27 5:55 PM, "Daniel Ence"
>>>>>>>>>>>>>><dence at genetics.utah.edu>
>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>> Hi Parul,
>>>>>>>>>>>>>> I think the way you described (with the maker_opts.ctl file)
>>>>>>>>>>>>>>is
>>>>>>>> how
>>>>>>>>>>>>>> you
>>>>>>>>>>>>>> want to proceed. You still need to give the genome too.
>>>>>>>>>>>>>> Daniel
>>>>>>>>>>>>>> Daniel Ence
>>>>>>>>>>>>>> Graduate Student
>>>>>>>>>>>>>> Eccles Institute of Human Genetics
>>>>>>>>>>>>>> University of Utah
>>>>>>>>>>>>>> 15 North 2030 East, Room 2100
>>>>>>>>>>>>>> Salt Lake City, UT 84112-5330
>>>>>>>>>>>>>> ________________________________________
>>>>>>>>>>>>>> From: maker-devel-bounces at yandell-lab.org
>>>>>>>>>>>>>> [maker-devel-bounces at yandell-lab.org] on behalf of Parul
>>>>>>>>>>>>>>  Kudtarkar
>>>>>>>>>>>>>> [parulk at caltech.edu]
>>>>>>>>>>>>>> Sent: Tuesday, November 27, 2012 3:41 PM
>>>>>>>>>>>>>> To: Parul Kudtarkar
>>>>>>>>>>>>>> Cc: maker-devel at yandell-lab.org
>>>>>>>>>>>>>> Subject: Re: [maker-devel] AED score
>>>>>>>>>>>>>> Also, are there any other parameters that are required when
>>>>>>>> filtering
>>>>>>>>>>>>>> based on AED score?
>>>>>>>>>>>>>>  Hello Carson,
>>>>>>>>>>>>>>  Just to confirm, Is there a script that would filter gene
>>>>>>>> models
>>>>>>>>>>>>>> at
>>>>>>>>>>>>>> specific AED score.
>>>>>>>>>>>>>>  Alternatively if I were to do this within maker with
>>>>>>>>>>>>>>regards
>>>>>>>> to
>>>>>>>>>>>>>> parameters
>>>>>>>>>>>>>>  in maker_opts.ctl file I would have to provide my predicted
>>>>>>>>>>>>>> genes
>>>>>>>>>>>>>> gff3
>>>>>>>>>>>>>>  file to model_gff and  set AED_threshold at desired
>>>>>>>>>>>>>>threshold?
>>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>>  Parul Kudtarkar
>>>>>>>>>>>>>>  AED score with 1 are the ones you don't want.  0 is best
>>>>>>>>>>>>>>and
>>>>>>>> 1
>>>>>>>>>>>>>>  is
>>>>>>>>>>>>>> worst
>>>>>>>>>>>>>>  as
>>>>>>>>>>>>>>  it is a distance metric.  You can use the AED_threshold
>>>>>>>> parameter
>>>>>>>>>>>>>> to
>>>>>>>>>>>>>>  require better matching to the evidence by setting it
>>>>>>>>>>>>>>closer
>>>>>>>> to
>>>>>>>>>>>>>> 0.
>>>>>>>>>>>>>> You
>>>>>>>>>>>>>>  can
>>>>>>>>>>>>>>  also try to increase protein homology evidence as some of
>>>>>>>> your
>>>>>>>>>>>>>> calls
>>>>>>>>>>>>>> may
>>>>>>>>>>>>>>  be split genes due to lack of evidence linking them.
>>>>>>>>>>>>>>  --Carson
>>>>>>>>>>>>>>  On 12-11-26 4:35 PM, "Parul Kudtarkar" <parulk at caltech.edu>
>>>>>>>>>>>>>> wrote:
>>>>>>>>>>>>>> Dear Maker community,
>>>>>>>>>>>>>> For gene-prediction I get training data-set from evidence
>>>>>>>>>>>>>>  based
>>>>>>>>>>>>>> prediction, I use this data-set to train SNAP as well as
>>>>>>>>>>>>>>Augustus
>>>>>>>> predictions, followed by boot-strapping. I would typically expect
>>>>>>>> 20-30K
>>>>>>>>>>>>>> genes however I am getting 8 times the expected gene count
>>>>>>>>>>>>>>  indicating
>>>>>>>>>>>>>>  too
>>>>>>>>>>>>>> many false positives. Is there a way to further refine these
>>>>>>>>>>>>>> predication/script to retain predictions with AED score 1
>>>>>>>>>>>>>>and
>>>>>>>>>>>>>> if
>>>>>>>>>>>>>> yes
>>>>>>>>>>>>>> how
>>>>>>>>>>>>>> to go about this?
>>>>>>>>>>>>>> Thanks and regards,
>>>>>>>>>>>>>> Parul Kudtarkar
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yande
>>>>>>>>>>>>>>ll
>>>>>>>> -l
>>>>>>>>>>>>>> ab
>>>>>>>>>>>>>> .o
>>>>>>>>>>>>>> rg
>>>>>>>>>>>>>>  --
>>>>>>>>>>>>>>  Scientific Programmer
>>>>>>>>>>>>>>  Center for Computational Regulatory Genomics
>>>>>>>>>>>>>>  Beckman Institute,
>>>>>>>>>>>>>>  California Institute of Technology
>>>>>>>>>>>>>>  http://www.spbase.org
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yande
>>>>>>>>>>>>>>ll
>>>>>>>>>>>>>>-l
>>>>>>>>>>>>>>a
>>>>>>>> b.
>>>>>>>>>>>>>> or
>>>>>>>>>>>>>> g
>>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>>> maker-devel mailing list
>>>>>>>>>>>>>> maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yande
>>>>>>>>>>>>>>ll
>>>>>>>>>>>>>>-l
>>>>>>>>>>>>>>a
>>>>>>>> b.
>>>>>>>>>>>>>> or
>>>>>>>>>>>>>> g
>>>>>>>>>>>>>>  _______________________________________________
>>>>>>>>>>>>>>  maker-devel mailing list
>>>>>>>>>>>>>>  maker-devel at box290.bluehost.com
>>>>>>>>>>>>>>
>>>>>>>>>>>>>>http://box290.bluehost.com/mailman/listinfo/maker-devel_yande
>>>>>>>>>>>>>>ll
>>>>>>>>>>>>>>-l
>>>>>>>>>>>>>>ab
>>>>>>>> .o
>>>>>>>>>>>>>> rg
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>>>> --
>>>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>>>> --
>>>>>>>>>>>> Scientific Programmer
>>>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>>>> Beckman Institute,
>>>>>>>>>>>> California Institute of Technology
>>>>>>>>>>>> http://www.spbase.org
>>>>>>>>>> --
>>>>>>>>>> Scientific Programmer
>>>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>>>> Beckman Institute,
>>>>>>>>>> California Institute of Technology
>>>>>>>>>> http://www.spbase.org
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>>
>>>>>>>> --
>>>>>>>> Scientific Programmer
>>>>>>>> Center for Computational Regulatory Genomics
>>>>>>>> Beckman Institute,
>>>>>>>> California Institute of Technology
>>>>>>>> http://www.spbase.org
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Scientific Programmer
>>>>>> Center for Computational Regulatory Genomics
>>>>>> Beckman Institute,
>>>>>> California Institute of Technology
>>>>>> http://www.spbase.org
>>>>>>
>>>>>
>>>>>
>>>>>--
>>>>>Scientific Programmer
>>>>>Center for Computational Regulatory Genomics
>>>>>Beckman Institute,
>>>>>California Institute of Technology
>>>>>http://www.spbase.org
>>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>>--
>>>Scientific Programmer
>>>Center for Computational Regulatory Genomics
>>>Beckman Institute,
>>>California Institute of Technology
>>>http://www.spbase.org
>>>
>>
>>
>>
>
>
>--
>Scientific Programmer
>Center for Computational Regulatory Genomics
>Beckman Institute,
>California Institute of Technology
>http://www.spbase.org
>





From indu2287 at gmail.com  Wed Dec 19 22:33:33 2012
From: indu2287 at gmail.com (indu khatri)
Date: Thu, 20 Dec 2012 11:03:33 +0530
Subject: [maker-devel] query
Message-ID: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>

 Hello Maker-devel
    Thanks for adding me to the list. I am new to this field. I have a
query regarding maker annotation.
    I have assembled a fungal Genome with 1590 contigs and was trying to
    annotate it using MAKER pipeline. I only have paired end WGS sequence
from
    Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
    any transcriptome data. I am using ESTs of a closer species for
validation
    and similarly the protein sequences. I have started annotation but the
    problem is the pipeline gets stuck to the first contig on blastx step
and
    doesn't move further. I could not make out the problem. Can you please
help
    me out of this.

Thanks and regards

-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India
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From dence at genetics.utah.edu  Thu Dec 20 09:53:59 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Thu, 20 Dec 2012 16:53:59 +0000
Subject: [maker-devel] query
In-Reply-To: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49939@mxb2.hg.genetics.utah.edu>

Hi Indu, Can you send you some of the error output that maker is printing? Blastx is used at a couple of different steps in maker's pipeline, so it is hard to tell without more information. You might also think about using the swiss prot database as a source for protein sequences.

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: maker-devel-bounces at yandell-lab.org [maker-devel-bounces at yandell-lab.org] on behalf of indu khatri [indu2287 at gmail.com]
Sent: Wednesday, December 19, 2012 10:33 PM
To: maker-devel at yandell-lab.org
Subject: [maker-devel] query

 Hello Maker-devel
    Thanks for adding me to the list. I am new to this field. I have a query regarding maker annotation.
    I have assembled a fungal Genome with 1590 contigs and was trying to
    annotate it using MAKER pipeline. I only have paired end WGS sequence from
    Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
    any transcriptome data. I am using ESTs of a closer species for validation
    and similarly the protein sequences. I have started annotation but the
    problem is the pipeline gets stuck to the first contig on blastx step and
    doesn't move further. I could not make out the problem. Can you please help
    me out of this.

Thanks and regards

--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

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From barry.moore at genetics.utah.edu  Thu Dec 20 10:20:31 2012
From: barry.moore at genetics.utah.edu (Barry Moore)
Date: Thu, 20 Dec 2012 10:20:31 -0700
Subject: [maker-devel] query
In-Reply-To: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
Message-ID: <15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>

Hi Indu,

The error output as Daniel suggested would be great and also a bit more detail on the problem.  Is it stalled on a long contig - how long?  How long has it been stalled for?  How many cpus are you running?  Are you running under MPI?  How big is the protein evidence file?  If you're using the altest function for your ESTs then it's running tblastx which is up to 10X slower than blastn with regular ESTs, is it possible that you're stuck on tblastx?

Finally, it can help if you isolate the problem a bit.  Can you run successfully on any of your contigs by running single contigs in your fasta file?  If it's stalled on a large contig, iteratively cut it in half and see if the problem isolates to one part of the contig.

B

On Dec 19, 2012, at 10:33 PM, indu khatri wrote:

>  Hello Maker-devel
>     Thanks for adding me to the list. I am new to this field. I have a query regarding maker annotation.
>     I have assembled a fungal Genome with 1590 contigs and was trying to
>     annotate it using MAKER pipeline. I only have paired end WGS sequence from
>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
>     any transcriptome data. I am using ESTs of a closer species for validation
>     and similarly the protein sequences. I have started annotation but the
>     problem is the pipeline gets stuck to the first contig on blastx step and
>     doesn't move further. I could not make out the problem. Can you please help
>     me out of this.
> 
> Thanks and regards
> 
> -- 
> Indu Khatri
> PhD Research Fellow,
> C/o Dr. Srikrishna Subramanian
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
> 
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

Barry Moore
Research Scientist
Dept. of Human Genetics
University of Utah
Salt Lake City, UT 84112
--------------------------------------------
(801) 585-3543




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From ranjani at uga.edu  Thu Dec 20 10:21:45 2012
From: ranjani at uga.edu (Sivaranjani Namasivayam)
Date: Thu, 20 Dec 2012 17:21:45 +0000
Subject: [maker-devel] MAKER annotations
Message-ID: <A21F03FBB429334EB4D450CC75E8CBF34B947EB4@CH1PRD0210MB384.namprd02.prod.outlook.com>

Hi,

I have a query regarding MAKER predictions. I made a a first round of predictions with RNAseq data from 454 and Illumina as EST evidence and proteins sequences from related organisms as proteins evidence. I also used augustus trained on a closely related organism as the ab-initio gene predictor.
I got ~4000 maker annotations (I expect around ~10,000 genes)

I used the annotations with AED score of 0 to train SNAP and used the HMM when retraining MAKER. This time I got ~8,000 genes but when I examined some annotations they appeared to be have worsened when compared to the initial predictions: that is, genes were getting split, UTRs were not annotated and the original predictions were modified but not for better.

Would you have any suggestions on how I can improve the annotations.

Also, is there a way to tell MAKER to produce gene models for all the cufflinks assembled transcripts(that is, for the data set I provide as EST evidence).

Thanks,
Ranjani
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From carsonhh at gmail.com  Thu Dec 20 11:16:42 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 20 Dec 2012 13:16:42 -0500
Subject: [maker-devel] MAKER annotations
In-Reply-To: <A21F03FBB429334EB4D450CC75E8CBF34B947EB4@CH1PRD0210MB384.namprd02.prod.outlook.com>
Message-ID: <CCF8B883.1724D%carsonhh@gmail.com>

Don't use an AED filter of 0.  It's too strict and will introduces certain
artifacts like partial genes.  Lower than 0.5 is probably sufficient for
training.  Also if in your first round you use Augustus, and the second
round you used SNAP instead, you may get poorer annotations because Augustus
is performing better than SNAP.  SNAP might need more training as well,
especially if the low AED filter introduced partial gene artifacts.    What
kind of organism are you annotating?

--Carson


From:  Sivaranjani Namasivayam <ranjani at uga.edu>
Date:  Thursday, 20 December, 2012 12:21 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  [maker-devel] MAKER annotations

Hi,

I have a query regarding MAKER predictions. I made a a first round of
predictions with RNAseq data from 454 and Illumina as EST evidence and
proteins sequences from related organisms as proteins evidence. I also used
augustus trained on a closely related organism as the ab-initio gene
predictor.
I got ~4000 maker annotations (I expect around ~10,000 genes)

I used the annotations with AED score of 0 to train SNAP and used the HMM
when retraining MAKER. This time I got ~8,000 genes but when I examined some
annotations they appeared to be have worsened when compared to the initial
predictions: that is, genes were getting split, UTRs were not annotated and
the original predictions were modified but not for better.

Would you have any suggestions on how I can improve the annotations.

Also, is there a way to tell MAKER to produce gene models for all the
cufflinks assembled transcripts(that is, for the data set I provide as EST
evidence).

Thanks,
Ranjani
_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From indu2287 at gmail.com  Thu Dec 20 12:41:59 2012
From: indu2287 at gmail.com (indu khatri)
Date: Thu, 20 Dec 2012 11:41:59 -0800
Subject: [maker-devel] Fwd:  query
In-Reply-To: <CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
	<15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>
	<CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>
Message-ID: <CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>

Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species
I chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <barry.moore at genetics.utah.edu
> wrote:

> Hi Indu,
>
> The error output as Daniel suggested would be great and also a bit more
> detail on the problem.  Is it stalled on a long contig - how long?  How
> long has it been stalled for?  How many cpus are you running?  Are you
> running under MPI?  How big is the protein evidence file?  If you're using
> the altest function for your ESTs then it's running tblastx which is up to
> 10X slower than blastn with regular ESTs, is it possible that you're stuck
> on tblastx?
>
> Finally, it can help if you isolate the problem a bit.  Can you run
> successfully on any of your contigs by running single contigs in your fasta
> file?  If it's stalled on a large contig, iteratively cut it in half and
> see if the problem isolates to one part of the contig.
>
> B
>
> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
>
>  Hello Maker-devel
>     Thanks for adding me to the list. I am new to this field. I have a
> query regarding maker annotation.
>     I have assembled a fungal Genome with 1590 contigs and was trying to
>     annotate it using MAKER pipeline. I only have paired end WGS sequence
> from
>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont
> have
>     any transcriptome data. I am using ESTs of a closer species for
> validation
>     and similarly the protein sequences. I have started annotation but the
>     problem is the pipeline gets stuck to the first contig on blastx step
> and
>     doesn't move further. I could not make out the problem. Can you please
> help
>     me out of this.
>
> Thanks and regards
>
> --
>
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
> Khatri
> PhD Research Fellow,
> C/o Dr. Srikrishna Subramanian
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
>
>  _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>
>  Barry Moore
> Research Scientist
> Dept. of Human Genetics
> University of Utah
> Salt Lake City, UT 84112
> --------------------------------------------
> (801) 585-3543
>
>
>
>
>


-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India
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From carsonhh at gmail.com  Thu Dec 20 15:04:43 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Thu, 20 Dec 2012 17:04:43 -0500
Subject: [maker-devel] MAKER annotations
In-Reply-To: <A21F03FBB429334EB4D450CC75E8CBF34B947ECF@CH1PRD0210MB384.namprd02.prod.outlook.com>
Message-ID: <CCF8F513.172A6%carsonhh@gmail.com>

If your organism is biased toward short genes with few introns, you might
also want to try something like GeneMark.  Not all gene predictors work well
on all kinds of gene structures, so I often will run multiple and then drop
those that perform poorly.

Thanks,
Carson


From:  Sivaranjani Namasivayam <ranjani at uga.edu>
Date:  Thursday, 20 December, 2012 1:33 PM
To:  Carson Holt <carsonhh at gmail.com>
Subject:  RE: [maker-devel] MAKER annotations

I am annotating a Apicomplexan organism.  When I retrained I used both SNAP
and Augustus. I will lower the AED score to 0.5 and check if that improves
the results.
Thanks for suggestion!

Ranjani

From: Carson Holt [carsonhh at gmail.com]
Sent: Thursday, December 20, 2012 1:16 PM
To: Sivaranjani Namasivayam; maker-devel at yandell-lab.org
Subject: Re: [maker-devel] MAKER annotations

Don't use an AED filter of 0.  It's too strict and will introduces certain
artifacts like partial genes.  Lower than 0.5 is probably sufficient for
training.  Also if in your first round you use Augustus, and the second
round you used SNAP instead, you may get poorer annotations because Augustus
is performing better than SNAP.  SNAP might need more training as well,
especially if the low AED filter introduced partial gene artifacts.    What
kind of organism are you annotating?

--Carson


From: Sivaranjani Namasivayam <ranjani at uga.edu>
Date: Thursday, 20 December, 2012 12:21 PM
To: "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject: [maker-devel] MAKER annotations

Hi,

I have a query regarding MAKER predictions. I made a a first round of
predictions with RNAseq data from 454 and Illumina as EST evidence and
proteins sequences from related organisms as proteins evidence. I also used
augustus trained on a closely related organism as the ab-initio gene
predictor.
I got ~4000 maker annotations (I expect around ~10,000 genes)

I used the annotations with AED score of 0 to train SNAP and used the HMM
when retraining MAKER. This time I got ~8,000 genes but when I examined some
annotations they appeared to be have worsened when compared to the initial
predictions: that is, genes were getting split, UTRs were not annotated and
the original predictions were modified but not for better.

Would you have any suggestions on how I can improve the annotations.

Also, is there a way to tell MAKER to produce gene models for all the
cufflinks assembled transcripts(that is, for the data set I provide as EST
evidence).

Thanks,
Ranjani
_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org


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From kapeelc at gmail.com  Thu Dec 20 16:00:10 2012
From: kapeelc at gmail.com (Kapeel Chougule)
Date: Thu, 20 Dec 2012 16:00:10 -0700
Subject: [maker-devel] AED eAED QI scores??
Message-ID: <CA+DOtediwDrsyvibU_B=av=knpeQRxVMjEM8_Xhq_a7rd2+NXQ@mail.gmail.com>

Hello,

I ran MAKER 2.27 using the option pred_stats=1 in the control file. In the
last column of the maker output gff file I have the
following annotation quality measures.

AED:0.41 eAED:0.41 QI:0|0.5|0.4|1|1|1|5|0|278

My understanding is that with AED score 0 your annotations are in prefect
agreement with the evidence data sets and with AED 1,vice versa.

 I would like to know what is the difference between AED against eAED
score. And how do I interpret the QI cloumn?

Thank you,

-- 
*

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719
www.genome.arizona.edu
*
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From dence at genetics.utah.edu  Fri Dec 21 10:08:31 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Fri, 21 Dec 2012 17:08:31 +0000
Subject: [maker-devel] AED eAED QI scores??
In-Reply-To: <CA+DOtediwDrsyvibU_B=av=knpeQRxVMjEM8_Xhq_a7rd2+NXQ@mail.gmail.com>
References: <CA+DOtediwDrsyvibU_B=av=knpeQRxVMjEM8_Xhq_a7rd2+NXQ@mail.gmail.com>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BC2@mxb2.hg.genetics.utah.edu>

Hi Kapeel, the QI columns are explained in the first maker paper (Cantarel and Yandell, Genome Research 2008).

>From pg. 189,

Table 2. Maker quality index summary

Length of the 5 UTR

Fraction of splice sites confirmed by an EST alignment

Fraction of exons that overlap an EST alignment

Fraction of exons that overlap EST or Protein alignments

Fraction of splice sites confirmed by a SNAP prediction

Fraction of exons that overlap a SNAP prediction

Number of exons in the mRNA

Length of the 3 UTR

Length of the protein sequence produced by the mRNA


eAED is the the AED edit distance at an exon level, not base pair level like normal AED.


Thanks,

Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: maker-devel-bounces at yandell-lab.org [maker-devel-bounces at yandell-lab.org] on behalf of Kapeel Chougule [kapeelc at gmail.com]
Sent: Thursday, December 20, 2012 4:00 PM
To: maker-devel at yandell-lab.org
Subject: [maker-devel] AED eAED QI scores??

Hello,

I ran MAKER 2.27 using the option pred_stats=1 in the control file. In the last column of the maker output gff file I have the following annotation quality measures.

AED:0.41 eAED:0.41 QI:0|0.5|0.4|1|1|1|5|0|278

My understanding is that with AED score 0 your annotations are in prefect agreement with the evidence data sets and with AED 1,vice versa.

 I would like to know what is the difference between AED against eAED score. And how do I interpret the QI cloumn?

Thank you,

--

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719
www.genome.arizona.edu<http://www.genome.arizona.edu>
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From dence at genetics.utah.edu  Fri Dec 21 10:23:24 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Fri, 21 Dec 2012 17:23:24 +0000
Subject: [maker-devel] query
In-Reply-To: <CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
	<15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>
	<CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>,
	<CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>

Hi Indu,

I'm going to echo Barry's request for more details about this problem too. Does augustus fail on more than one contig or does it fail repeatedly on the same contig? If its only contig, how big is that contig and is it possibly all masked out by repeatmasker? If you exclude that one contig, do the rest run successfully?  What are you using to mask the repeats in the genome? Which augustus model are you using, and how did you choose that model?

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: indu khatri [indu2287 at gmail.com]
Sent: Thursday, December 20, 2012 12:41 PM
To: maker-devel at yandell-lab.org
Cc: Barry Moore; Daniel Ence
Subject: Fwd: [maker-devel] query


Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species I chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <barry.moore at genetics.utah.edu<mailto:barry.moore at genetics.utah.edu>> wrote:
Hi Indu,

The error output as Daniel suggested would be great and also a bit more detail on the problem.  Is it stalled on a long contig - how long?  How long has it been stalled for?  How many cpus are you running?  Are you running under MPI?  How big is the protein evidence file?  If you're using the altest function for your ESTs then it's running tblastx which is up to 10X slower than blastn with regular ESTs, is it possible that you're stuck on tblastx?

Finally, it can help if you isolate the problem a bit.  Can you run successfully on any of your contigs by running single contigs in your fasta file?  If it's stalled on a large contig, iteratively cut it in half and see if the problem isolates to one part of the contig.

B

On Dec 19, 2012, at 10:33 PM, indu khatri wrote:

 Hello Maker-devel
    Thanks for adding me to the list. I am new to this field. I have a query regarding maker annotation.
    I have assembled a fungal Genome with 1590 contigs and was trying to
    annotate it using MAKER pipeline. I only have paired end WGS sequence from
    Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
    any transcriptome data. I am using ESTs of a closer species for validation
    and similarly the protein sequences. I have started annotation but the
    problem is the pipeline gets stuck to the first contig on blastx step and
    doesn't move further. I could not make out the problem. Can you please help
    me out of this.

Thanks and regards

--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

_______________________________________________
maker-devel mailing list
maker-devel at box290.bluehost.com<mailto:maker-devel at box290.bluehost.com>
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

Barry Moore
Research Scientist
Dept. of Human Genetics
University of Utah
Salt Lake City, UT 84112
--------------------------------------------
(801) 585-3543







--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India

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From carsonhh at gmail.com  Fri Dec 21 10:25:13 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 21 Dec 2012 12:25:13 -0500
Subject: [maker-devel] AED eAED QI scores??
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BC2@mxb2.hg.genetics.utah.edu>
Message-ID: <CCFA01EA.172C9%carsonhh@gmail.com>

eAED is a little more than that.  It is still at a base pair level, but it
uses exon inference from mRNAseq and in addition has a protein evidence
overlap correction for each exon.  Sometimes the overlapping protein reading
frame doesn't perfectly match the entire model (exonerate for example can
shift the reading frames by 1 in the middle to get a better alignment and
BLAST can't).  This means that just because you have physical overlap it may
be meaningless overlap.  eAED corrects for this.  Also it can use inferred
evidence from mRNAseq.  For example if you have mRNAseq data that confirm
both ends of an exon around the splice site, but not the middle of the exon,
then there is probably enough correlated data for MAKER to confidently infer
the middle of the exon.  It then counts those base pairs as confirmed even
though they don't physically overlap.  This is common with mRNAseq data as
it can taper off in the middle of long exons or won't align correctly around
short exons.  In both cases the middle gets left out.  MAKER uses
information from the reading frame and the ab initio predictors to infer if
those regions.

Most of the time eAED and AED will be identical.  eAED can sometimes be
higher for certain mRNAseq alignments and lower for what are apparent
spurious protein alignments.

--Carson


From:  Daniel Ence <dence at genetics.utah.edu>
Date:  Friday, 21 December, 2012 12:08 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] AED eAED QI scores??

Hi Kapeel, the QI columns are explained in the first maker paper (Cantarel
and Yandell, Genome Research 2008).

>From pg. 189,
Table 2. Maker quality index summary

Length of the 5 UTR

Fraction of splice sites confirmed by an EST alignment

Fraction of exons that overlap an EST alignment

Fraction of exons that overlap EST or Protein alignments

Fraction of splice sites confirmed by a SNAP prediction

Fraction of exons that overlap a SNAP prediction

Number of exons in the mRNA

Length of the 3 UTR

Length of the protein sequence produced by the mRNA



eAED is the the AED edit distance at an exon level, not base pair level like
normal AED. 



Thanks,

Daniel 


Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

From: maker-devel-bounces at yandell-lab.org
[maker-devel-bounces at yandell-lab.org] on behalf of Kapeel Chougule
[kapeelc at gmail.com]
Sent: Thursday, December 20, 2012 4:00 PM
To: maker-devel at yandell-lab.org
Subject: [maker-devel] AED eAED QI scores??

Hello, 

I ran MAKER 2.27 using the option pred_stats=1 in the control file. In the
last column of the maker output gff file I have the following annotation
quality measures.

AED:0.41 eAED:0.41 QI:0|0.5|0.4|1|1|1|5|0|278

My understanding is that with AED score 0 your annotations are in prefect
agreement with the evidence data sets and with AED 1,vice versa.

 I would like to know what is the difference between AED against eAED score.
And how do I interpret the QI cloumn?

Thank you,

-- 

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719   
www.genome.arizona.edu <http://www.genome.arizona.edu>
_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From carsonhh at gmail.com  Fri Dec 21 10:31:32 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 21 Dec 2012 12:31:32 -0500
Subject: [maker-devel] query
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>
Message-ID: <CCFA05D3.172F3%carsonhh@gmail.com>

Also try and capture the entire STDERR to a file for the failure, and attach
it to the e-mail.  The failure indicates that augustus itself failed.
Normally augustus should have provided it's own error message before the
"ERROR: Augustus failed" message.  If not it means that augusuts is failing
to even initialize.  If you send the whole STDERR we can find command line
MAKER used to run augustus, and we can let you try and execute the exact
same command line directly in a terminal (outside of MAKER) to see what
augustus does.

Thanks,
Carson



From:  Daniel Ence <dence at genetics.utah.edu>
Date:  Friday, 21 December, 2012 12:23 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] query

Hi Indu, 

I'm going to echo Barry's request for more details about this problem too.
Does augustus fail on more than one contig or does it fail repeatedly on the
same contig? If its only contig, how big is that contig and is it possibly
all masked out by repeatmasker? If you exclude that one contig, do the rest
run successfully?  What are you using to mask the repeats in the genome?
Which augustus model are you using, and how did you choose that model?

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

From: indu khatri [indu2287 at gmail.com]
Sent: Thursday, December 20, 2012 12:41 PM
To: maker-devel at yandell-lab.org
Cc: Barry Moore; Daniel Ence
Subject: Fwd: [maker-devel] query


Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species I
chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore
<barry.moore at genetics.utah.edu> wrote:
> Hi Indu, 
> 
> The error output as Daniel suggested would be great and also a bit more detail
> on the problem.  Is it stalled on a long contig - how long?  How long has it
> been stalled for?  How many cpus are you running?  Are you running under MPI?
> How big is the protein evidence file?  If you're using the altest function for
> your ESTs then it's running tblastx which is up to 10X slower than blastn with
> regular ESTs, is it possible that you're stuck on tblastx?
> 
> Finally, it can help if you isolate the problem a bit.  Can you run
> successfully on any of your contigs by running single contigs in your fasta
> file?  If it's stalled on a large contig, iteratively cut it in half and see
> if the problem isolates to one part of the contig.
> 
> B
> 
> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
> 
>>  Hello Maker-devel
>>     Thanks for adding me to the list. I am new to this field. I have a query
>> regarding maker annotation.
>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>     annotate it using MAKER pipeline. I only have paired end WGS sequence
>> from
>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
>>     any transcriptome data. I am using ESTs of a closer species for
>> validation
>>     and similarly the protein sequences. I have started annotation but the
>>     problem is the pipeline gets stuck to the first contig on blastx step and
>>     doesn't move further. I could not make out the problem. Can you please
>> help
>>     me out of this.
>> 
>> Thanks and regards
>> 
>> -- 
>>  
>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6
>> a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
>> PhD Research Fellow,
>> C/o Dr. Srikrishna Subramanian
>> Institute of Microbial Technology,
>> Chandigarh-160036,
>> India
>> 
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
> 
> Barry Moore
> Research Scientist
> Dept. of Human Genetics
> University of Utah
> Salt Lake City, UT 84112
> --------------------------------------------
> (801) 585-3543
> 
> 
> 
> 



-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India

_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.com
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

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From carsonhh at gmail.com  Fri Dec 21 10:40:10 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 21 Dec 2012 12:40:10 -0500
Subject: [maker-devel] query
In-Reply-To: <CCFA0734.17301%carsonhh@gmail.com>
Message-ID: <CCFA0869.17306%carsonhh@gmail.com>

In addition my last e-mailed explanation of eAED, here is where you can get
an explanation of how MAKER uses and calculates AED -->
http://www.biomedcentral.com/1471-2105/12/491
The original AED concept was borrowed from here  -->
http://www.biomedcentral.com/1471-2105/10/67

Thanks,
Carson

From:  Carson Holt <carsonhh at gmail.com>
Date:  Friday, 21 December, 2012 12:31 PM
To:  Daniel Ence <dence at genetics.utah.edu>, "maker-devel at yandell-lab.org"
<maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] query

Also try and capture the entire STDERR to a file for the failure, and attach
it to the e-mail.  The failure indicates that augustus itself failed.
Normally augustus should have provided it's own error message before the
"ERROR: Augustus failed" message.  If not it means that augusuts is failing
to even initialize.  If you send the whole STDERR we can find command line
MAKER used to run augustus, and we can let you try and execute the exact
same command line directly in a terminal (outside of MAKER) to see what
augustus does.

Thanks,
Carson



From:  Daniel Ence <dence at genetics.utah.edu>
Date:  Friday, 21 December, 2012 12:23 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] query

Hi Indu, 

I'm going to echo Barry's request for more details about this problem too.
Does augustus fail on more than one contig or does it fail repeatedly on the
same contig? If its only contig, how big is that contig and is it possibly
all masked out by repeatmasker? If you exclude that one contig, do the rest
run successfully?  What are you using to mask the repeats in the genome?
Which augustus model are you using, and how did you choose that model?

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

From: indu khatri [indu2287 at gmail.com]
Sent: Thursday, December 20, 2012 12:41 PM
To: maker-devel at yandell-lab.org
Cc: Barry Moore; Daniel Ence
Subject: Fwd: [maker-devel] query


Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species I
chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore
<barry.moore at genetics.utah.edu> wrote:
> Hi Indu, 
> 
> The error output as Daniel suggested would be great and also a bit more detail
> on the problem.  Is it stalled on a long contig - how long?  How long has it
> been stalled for?  How many cpus are you running?  Are you running under MPI?
> How big is the protein evidence file?  If you're using the altest function for
> your ESTs then it's running tblastx which is up to 10X slower than blastn with
> regular ESTs, is it possible that you're stuck on tblastx?
> 
> Finally, it can help if you isolate the problem a bit.  Can you run
> successfully on any of your contigs by running single contigs in your fasta
> file?  If it's stalled on a large contig, iteratively cut it in half and see
> if the problem isolates to one part of the contig.
> 
> B
> 
> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
> 
>>  Hello Maker-devel
>>     Thanks for adding me to the list. I am new to this field. I have a query
>> regarding maker annotation.
>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>     annotate it using MAKER pipeline. I only have paired end WGS sequence
>> from
>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
>>     any transcriptome data. I am using ESTs of a closer species for
>> validation
>>     and similarly the protein sequences. I have started annotation but the
>>     problem is the pipeline gets stuck to the first contig on blastx step and
>>     doesn't move further. I could not make out the problem. Can you please
>> help
>>     me out of this.
>> 
>> Thanks and regards
>> 
>> -- 
>>  
>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6
>> a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
>> PhD Research Fellow,
>> C/o Dr. Srikrishna Subramanian
>> Institute of Microbial Technology,
>> Chandigarh-160036,
>> India
>> 
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
> 
> Barry Moore
> Research Scientist
> Dept. of Human Genetics
> University of Utah
> Salt Lake City, UT 84112
> --------------------------------------------
> (801) 585-3543
> 
> 
> 
> 



-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India

_______________________________________________ maker-devel mailing list
maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/m
aker-devel_yandell-lab.org


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From indu2287 at gmail.com  Fri Dec 21 10:58:31 2012
From: indu2287 at gmail.com (indu khatri)
Date: Fri, 21 Dec 2012 09:58:31 -0800
Subject: [maker-devel] query
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
	<15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>
	<CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>
	<CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>
	<F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>
Message-ID: <CAFCapZvXFg3TdU8uEd0szU9inLCrNjujH36tEm55DO=1rKR1mw@mail.gmail.com>

Hii Daniel

It was failing for 1 contig only. The contig length is approx 1.5 Mb.
Excluding that contig the run was successful. I am using RepeatMasker
libraries only for masking the sequences. I used Fusarium graminearum
species as Augustus model species.

I have one more query about Maker annotation results. Only augustus as gene
predictor can be a good predictor for annotations or I have to retrain it
using the previous results from first runs of MAKER in order to get
validated gene models.

Thanks.


On Fri, Dec 21, 2012 at 9:23 AM, Daniel Ence <dence at genetics.utah.edu>wrote:

>  Hi Indu,
>
>  I'm going to echo Barry's request for more details about this problem
> too. Does augustus fail on more than one contig or does it fail repeatedly
> on the same contig? If its only contig, how big is that contig and is it
> possibly all masked out by repeatmasker? If you exclude that one contig, do
> the rest run successfully?  What are you using to mask the repeats in the
> genome? Which augustus model are you using, and how did you choose that
> model?
>
>  Thanks,
> Daniel
>
>  Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
>
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
>   ------------------------------
> *From:* indu khatri [indu2287 at gmail.com]
> *Sent:* Thursday, December 20, 2012 12:41 PM
> *To:* maker-devel at yandell-lab.org
> *Cc:* Barry Moore; Daniel Ence
> *Subject:* Fwd: [maker-devel] query
>
>
> Thanks Daniel and Barry for your reply.
>
> I have sorted out that problem. It was due to very distant homolog species
> I chose for training.
>
> But, I am still getting some errors while running MAKER.
> ERROR: Augustus failed
> ERROR: Failed while preparing ab-inits
> ERROR: Chunk failed at level:4, tier_type:0
> FAILED CONTIG
>
> Can you please tell me what is the possible reason for this error?
>
> Thanks in advance.
>
>
>
> On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <
> barry.moore at genetics.utah.edu> wrote:
>
>> Hi Indu,
>>
>>  The error output as Daniel suggested would be great and also a bit more
>> detail on the problem.  Is it stalled on a long contig - how long?  How
>> long has it been stalled for?  How many cpus are you running?  Are you
>> running under MPI?  How big is the protein evidence file?  If you're using
>> the altest function for your ESTs then it's running tblastx which is up to
>> 10X slower than blastn with regular ESTs, is it possible that you're stuck
>> on tblastx?
>>
>>  Finally, it can help if you isolate the problem a bit.  Can you run
>> successfully on any of your contigs by running single contigs in your fasta
>> file?  If it's stalled on a large contig, iteratively cut it in half and
>> see if the problem isolates to one part of the contig.
>>
>>  B
>>
>>  On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
>>
>>     Hello Maker-devel
>>     Thanks for adding me to the list. I am new to this field. I have a
>> query regarding maker annotation.
>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>     annotate it using MAKER pipeline. I only have paired end WGS sequence
>> from
>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont
>> have
>>     any transcriptome data. I am using ESTs of a closer species for
>> validation
>>     and similarly the protein sequences. I have started annotation but the
>>     problem is the pipeline gets stuck to the first contig on blastx step
>> and
>>     doesn't move further. I could not make out the problem. Can you
>> please help
>>     me out of this.
>>
>>  Thanks and regards
>>
>>  --
>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
>> Khatri
>> PhD Research Fellow,
>> C/o Dr. Srikrishna Subramanian
>> Institute of Microbial Technology,
>> Chandigarh-160036,
>> India
>>
>>    _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>>
>>  Barry Moore
>> Research Scientist
>> Dept. of Human Genetics
>> University of Utah
>> Salt Lake City, UT 84112
>> --------------------------------------------
>> (801) 585-3543
>>
>>
>>
>>
>>
>
>
>  --
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
> Khatri
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
>
>
>
>
>  --
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
> Khatri
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
>
>
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>


-- 
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India
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From dence at genetics.utah.edu  Fri Dec 21 12:07:40 2012
From: dence at genetics.utah.edu (Daniel Ence)
Date: Fri, 21 Dec 2012 19:07:40 +0000
Subject: [maker-devel] query
In-Reply-To: <CAFCapZvXFg3TdU8uEd0szU9inLCrNjujH36tEm55DO=1rKR1mw@mail.gmail.com>
References: <CAFCapZsrFzCcDO1Gh4XmXOkKKaiAovoQg8gKxKU8RTMHWz0mZg@mail.gmail.com>
	<15CF0B2F-124A-4E9A-8804-CF9CA3E013D4@genetics.utah.edu>
	<CAFCapZsqfjV5AeM8Y4nwBg=V0rABZckXzkAJ7hSu51gjs7m1Nw@mail.gmail.com>
	<CAFCapZvURBtwMh1Bdev1zqf53T3-5MK9mt+kqsM80THD8xBxbQ@mail.gmail.com>
	<F2774D6F47BB9D449EEA8B0BF6679D9C50D49BDA@mxb2.hg.genetics.utah.edu>,
	<CAFCapZvXFg3TdU8uEd0szU9inLCrNjujH36tEm55DO=1rKR1mw@mail.gmail.com>
Message-ID: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49C08@mxb2.hg.genetics.utah.edu>

Hi Indu, Can you send the error output that Carson mentioned? Using a closely related augustus model for your organism can be a good approach, if that's the best you can do. Training augustus for your organism would be better, but you don't have to do it.

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: indu khatri [indu2287 at gmail.com]
Sent: Friday, December 21, 2012 10:58 AM
To: Daniel Ence
Cc: maker-devel at yandell-lab.org
Subject: Re: [maker-devel] query

Hii Daniel

It was failing for 1 contig only. The contig length is approx 1.5 Mb. Excluding that contig the run was successful. I am using RepeatMasker libraries only for masking the sequences. I used Fusarium graminearum species as Augustus model species.

I have one more query about Maker annotation results. Only augustus as gene predictor can be a good predictor for annotations or I have to retrain it using the previous results from first runs of MAKER in order to get validated gene models.

Thanks.


On Fri, Dec 21, 2012 at 9:23 AM, Daniel Ence <dence at genetics.utah.edu<mailto:dence at genetics.utah.edu>> wrote:
Hi Indu,

I'm going to echo Barry's request for more details about this problem too. Does augustus fail on more than one contig or does it fail repeatedly on the same contig? If its only contig, how big is that contig and is it possibly all masked out by repeatmasker? If you exclude that one contig, do the rest run successfully?  What are you using to mask the repeats in the genome? Which augustus model are you using, and how did you choose that model?

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah

15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
________________________________
From: indu khatri [indu2287 at gmail.com<mailto:indu2287 at gmail.com>]
Sent: Thursday, December 20, 2012 12:41 PM
To: maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org>
Cc: Barry Moore; Daniel Ence
Subject: Fwd: [maker-devel] query


Thanks Daniel and Barry for your reply.

I have sorted out that problem. It was due to very distant homolog species I chose for training.

But, I am still getting some errors while running MAKER.
ERROR: Augustus failed
ERROR: Failed while preparing ab-inits
ERROR: Chunk failed at level:4, tier_type:0
FAILED CONTIG

Can you please tell me what is the possible reason for this error?

Thanks in advance.



On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <barry.moore at genetics.utah.edu<mailto:barry.moore at genetics.utah.edu>> wrote:
Hi Indu,

The error output as Daniel suggested would be great and also a bit more detail on the problem.  Is it stalled on a long contig - how long?  How long has it been stalled for?  How many cpus are you running?  Are you running under MPI?  How big is the protein evidence file?  If you're using the altest function for your ESTs then it's running tblastx which is up to 10X slower than blastn with regular ESTs, is it possible that you're stuck on tblastx?

Finally, it can help if you isolate the problem a bit.  Can you run successfully on any of your contigs by running single contigs in your fasta file?  If it's stalled on a large contig, iteratively cut it in half and see if the problem isolates to one part of the contig.

B

On Dec 19, 2012, at 10:33 PM, indu khatri wrote:

 Hello Maker-devel
    Thanks for adding me to the list. I am new to this field. I have a query regarding maker annotation.
    I have assembled a fungal Genome with 1590 contigs and was trying to
    annotate it using MAKER pipeline. I only have paired end WGS sequence from
    Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
    any transcriptome data. I am using ESTs of a closer species for validation
    and similarly the protein sequences. I have started annotation but the
    problem is the pipeline gets stuck to the first contig on blastx step and
    doesn't move further. I could not make out the problem. Can you please help
    me out of this.

Thanks and regards

--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

_______________________________________________
maker-devel mailing list
maker-devel at box290.bluehost.com<mailto:maker-devel at box290.bluehost.com>
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org

Barry Moore
Research Scientist
Dept. of Human Genetics
University of Utah
Salt Lake City, UT 84112
--------------------------------------------
(801) 585-3543







--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India




--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
Institute of Microbial Technology,
Chandigarh-160036,
India


_______________________________________________
maker-devel mailing list
maker-devel at box290.bluehost.com<mailto:maker-devel at box290.bluehost.com>
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org




--
<https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

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From carsonhh at gmail.com  Fri Dec 21 12:14:38 2012
From: carsonhh at gmail.com (Carson Holt)
Date: Fri, 21 Dec 2012 14:14:38 -0500
Subject: [maker-devel] query
In-Reply-To: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49C08@mxb2.hg.genetics.utah.edu>
Message-ID: <CCFA1E38.17327%carsonhh@gmail.com>

Daniel is right. If it's another Fusarium species retraining probably isn't
necessary (distantly related fungi would probably need retraining though).
I'd recommend using GeneMark as well though.  It is very easy to train and
works well on Fungi species.  Could you include the version of Augustus you
are using and the sequence for the contig that fails when you send the
STDERR.

Thanks,
Carson


From:  Daniel Ence <dence at genetics.utah.edu>
Date:  Friday, 21 December, 2012 2:07 PM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] query

Hi Indu, Can you send the error output that Carson mentioned? Using a
closely related augustus model for your organism can be a good approach, if
that's the best you can do. Training augustus for your organism would be
better, but you don't have to do it.

Thanks,
Daniel

Daniel Ence
Graduate Student
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

From: indu khatri [indu2287 at gmail.com]
Sent: Friday, December 21, 2012 10:58 AM
To: Daniel Ence
Cc: maker-devel at yandell-lab.org
Subject: Re: [maker-devel] query

Hii Daniel 

It was failing for 1 contig only. The contig length is approx 1.5 Mb.
Excluding that contig the run was successful. I am using RepeatMasker
libraries only for masking the sequences. I used Fusarium graminearum
species as Augustus model species.

I have one more query about Maker annotation results. Only augustus as gene
predictor can be a good predictor for annotations or I have to retrain it
using the previous results from first runs of MAKER in order to get
validated gene models.

Thanks.


On Fri, Dec 21, 2012 at 9:23 AM, Daniel Ence <dence at genetics.utah.edu>
wrote:
> Hi Indu, 
> 
> I'm going to echo Barry's request for more details about this problem too.
> Does augustus fail on more than one contig or does it fail repeatedly on the
> same contig? If its only contig, how big is that contig and is it possibly all
> masked out by repeatmasker? If you exclude that one contig, do the rest run
> successfully?  What are you using to mask the repeats in the genome? Which
> augustus model are you using, and how did you choose that model?
> 
> Thanks,
> Daniel
> 
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> 
> From: indu khatri [indu2287 at gmail.com]
> Sent: Thursday, December 20, 2012 12:41 PM
> To: maker-devel at yandell-lab.org
> Cc: Barry Moore; Daniel Ence
> Subject: Fwd: [maker-devel] query
> 
> 
> Thanks Daniel and Barry for your reply.
> 
> I have sorted out that problem. It was due to very distant homolog species I
> chose for training.
> 
> But, I am still getting some errors while running MAKER.
> ERROR: Augustus failed
> ERROR: Failed while preparing ab-inits
> ERROR: Chunk failed at level:4, tier_type:0
> FAILED CONTIG
> 
> Can you please tell me what is the possible reason for this error?
> 
> Thanks in advance.
> 
> 
> 
> On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <barry.moore at genetics.utah.edu>
> wrote:
>> Hi Indu, 
>> 
>> The error output as Daniel suggested would be great and also a bit more
>> detail on the problem.  Is it stalled on a long contig - how long?  How long
>> has it been stalled for?  How many cpus are you running?  Are you running
>> under MPI?  How big is the protein evidence file?  If you're using the altest
>> function for your ESTs then it's running tblastx which is up to 10X slower
>> than blastn with regular ESTs, is it possible that you're stuck on tblastx?
>> 
>> Finally, it can help if you isolate the problem a bit.  Can you run
>> successfully on any of your contigs by running single contigs in your fasta
>> file?  If it's stalled on a large contig, iteratively cut it in half and see
>> if the problem isolates to one part of the contig.
>> 
>> B
>> 
>> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
>> 
>>>  Hello Maker-devel
>>>     Thanks for adding me to the list. I am new to this field. I have a query
>>> regarding maker annotation.
>>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>>     annotate it using MAKER pipeline. I only have paired end WGS sequence
>>> from
>>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont have
>>>     any transcriptome data. I am using ESTs of a closer species for
>>> validation
>>>     and similarly the protein sequences. I have started annotation but the
>>>     problem is the pipeline gets stuck to the first contig on blastx step
>>> and
>>>     doesn't move further. I could not make out the problem. Can you please
>>> help
>>>     me out of this.
>>> 
>>> Thanks and regards
>>> 
>>> -- 
>>>  
>>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e
>>> 6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
>>> PhD Research Fellow,
>>> C/o Dr. Srikrishna Subramanian
>>> Institute of Microbial Technology,
>>> Chandigarh-160036,
>>> India
>>> 
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>> 
>> Barry Moore
>> Research Scientist
>> Dept. of Human Genetics
>> University of Utah
>> Salt Lake City, UT 84112
>> --------------------------------------------
>> (801) 585-3543
>> 
>> 
>> 
>> 
> 
> 
> 
> -- 
>  
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a
> &attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
> 
> 
> 
> 
> -- 
>  
> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a
> &attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
> Institute of Microbial Technology,
> Chandigarh-160036,
> India
> 
> 
> _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
> 



-- 
 <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8
e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw> Indu Khatri
PhD Research Fellow,
C/o Dr. Srikrishna Subramanian
Institute of Microbial Technology,
Chandigarh-160036,
India

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From indu2287 at gmail.com  Wed Dec 26 02:34:43 2012
From: indu2287 at gmail.com (indu khatri)
Date: Wed, 26 Dec 2012 15:04:43 +0530
Subject: [maker-devel] query
In-Reply-To: <CCFA1E38.17327%carsonhh@gmail.com>
References: <F2774D6F47BB9D449EEA8B0BF6679D9C50D49C08@mxb2.hg.genetics.utah.edu>
	<CCFA1E38.17327%carsonhh@gmail.com>
Message-ID: <CAFCapZsuT4TaT1dDk3=C0QjtaJxK0-iBQ_HR-n2wDk6kAGiLFw@mail.gmail.com>

Thanks all.

The maker is now running properly. I don't know where the problem actually
was. I re install everything and now its working.

I'll let you know if there are any problems in future.

Thanks!


On Sat, Dec 22, 2012 at 12:44 AM, Carson Holt <carsonhh at gmail.com> wrote:

> Daniel is right. If it's another Fusarium species retraining probably
> isn't necessary (distantly related fungi would probably need retraining
> though).  I'd recommend using GeneMark as well though.  It is very easy to
> train and works well on Fungi species.  Could you include the version of
> Augustus you are using and the sequence for the contig that fails when you
> send the STDERR.
>
> Thanks,
> Carson
>
>
> From: Daniel Ence <dence at genetics.utah.edu>
> Date: Friday, 21 December, 2012 2:07 PM
> To: "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
> Subject: Re: [maker-devel] query
>
> Hi Indu, Can you send the error output that Carson mentioned? Using a
> closely related augustus model for your organism can be a good approach, if
> that's the best you can do. Training augustus for your organism would be
> better, but you don't have to do it.
>
> Thanks,
> Daniel
>
> Daniel Ence
> Graduate Student
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
> ------------------------------
> *From:* indu khatri [indu2287 at gmail.com]
> *Sent:* Friday, December 21, 2012 10:58 AM
> *To:* Daniel Ence
> *Cc:* maker-devel at yandell-lab.org
> *Subject:* Re: [maker-devel] query
>
> Hii Daniel
>
> It was failing for 1 contig only. The contig length is approx 1.5 Mb.
> Excluding that contig the run was successful. I am using RepeatMasker
> libraries only for masking the sequences. I used Fusarium graminearum
> species as Augustus model species.
>
> I have one more query about Maker annotation results. Only augustus as
> gene predictor can be a good predictor for annotations or I have to retrain
> it using the previous results from first runs of MAKER in order to get
> validated gene models.
>
> Thanks.
>
>
> On Fri, Dec 21, 2012 at 9:23 AM, Daniel Ence <dence at genetics.utah.edu>wrote:
>
>> Hi Indu,
>>
>> I'm going to echo Barry's request for more details about this problem
>> too. Does augustus fail on more than one contig or does it fail repeatedly
>> on the same contig? If its only contig, how big is that contig and is it
>> possibly all masked out by repeatmasker? If you exclude that one contig, do
>> the rest run successfully?  What are you using to mask the repeats in the
>> genome? Which augustus model are you using, and how did you choose that
>> model?
>>
>> Thanks,
>> Daniel
>>
>> Daniel Ence
>> Graduate Student
>> Eccles Institute of Human Genetics
>> University of Utah
>>
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ------------------------------
>> *From:* indu khatri [indu2287 at gmail.com]
>> *Sent:* Thursday, December 20, 2012 12:41 PM
>> *To:* maker-devel at yandell-lab.org
>> *Cc:* Barry Moore; Daniel Ence
>> *Subject:* Fwd: [maker-devel] query
>>
>>
>> Thanks Daniel and Barry for your reply.
>>
>> I have sorted out that problem. It was due to very distant homolog
>> species I chose for training.
>>
>> But, I am still getting some errors while running MAKER.
>> ERROR: Augustus failed
>> ERROR: Failed while preparing ab-inits
>> ERROR: Chunk failed at level:4, tier_type:0
>> FAILED CONTIG
>>
>> Can you please tell me what is the possible reason for this error?
>>
>> Thanks in advance.
>>
>>
>>
>> On Thu, Dec 20, 2012 at 10:50 PM, Barry Moore <
>> barry.moore at genetics.utah.edu> wrote:
>>
>>> Hi Indu,
>>>
>>> The error output as Daniel suggested would be great and also a bit more
>>> detail on the problem.  Is it stalled on a long contig - how long?  How
>>> long has it been stalled for?  How many cpus are you running?  Are you
>>> running under MPI?  How big is the protein evidence file?  If you're using
>>> the altest function for your ESTs then it's running tblastx which is up to
>>> 10X slower than blastn with regular ESTs, is it possible that you're stuck
>>> on tblastx?
>>>
>>> Finally, it can help if you isolate the problem a bit.  Can you run
>>> successfully on any of your contigs by running single contigs in your fasta
>>> file?  If it's stalled on a large contig, iteratively cut it in half and
>>> see if the problem isolates to one part of the contig.
>>>
>>> B
>>>
>>> On Dec 19, 2012, at 10:33 PM, indu khatri wrote:
>>>
>>>  Hello Maker-devel
>>>     Thanks for adding me to the list. I am new to this field. I have a
>>> query regarding maker annotation.
>>>     I have assembled a fungal Genome with 1590 contigs and was trying to
>>>     annotate it using MAKER pipeline. I only have paired end WGS
>>> sequence from
>>>     Illumina HiSeq sequencing which were assembled using CLCbio. I dont
>>> have
>>>     any transcriptome data. I am using ESTs of a closer species for
>>> validation
>>>     and similarly the protein sequences. I have started annotation but
>>> the
>>>     problem is the pipeline gets stuck to the first contig on blastx
>>> step and
>>>     doesn't move further. I could not make out the problem. Can you
>>> please help
>>>     me out of this.
>>>
>>> Thanks and regards
>>>
>>> --
>>>
>>> <https://mail.google.com/mail/?ui=2&ik=8ec2492227&view=att&th=130da06dcd7f8e6a&attid=0.0.1&disp=emb&realattid=b8967bbd6e93d49d_0.25&zw>Indu
>>> Khatri
>>> PhD Research Fellow,
>>> C/o Dr. Srikrishna Subramanian
>>> Institute of Microbial Technology,
>>> Chandigarh-160036,
>>> India
>>>
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>>
>>>
>>> Barry Moore
>>> Research Scientist
>>> Dept. of Human Genetics
>>> University of Utah
>>> Salt Lake City, UT 84112
>>> --------------------------------------------
>>> (801) 585-3543
>>>
>>>
>>>
>>>
>>>
>>
>>
>>
>> _______________________________________________
>> maker-devel mailing list
>> maker-devel at box290.bluehost.com
>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>
>>
>
>
> _______________________________________________ maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>



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Indu
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