[maker-devel] FW: maker error

mark.rose at syngenta.com mark.rose at syngenta.com
Sat Dec 8 09:06:00 MST 2012


Hi

I just installed maker and am trying to run it with the sample data but get the following error:

$ maker
STATUS: Parsing control files...
WARNING: RepBase is not installed for RepeatMasker. This limits RepeatMasker's functionality and makes the model_org option in the control files virtually meaningless. MAKER will now reconfigure for simple repeat masking only.
STATUS: Processing and indexing input FASTA files...
Segmentation fault (core dumped)

I've attached the config files and the output of $maker --debug

Thanks for your help

Mark




This message may contain confidential information. If you are not the designated recipient, please notify the sender immediately, and delete the original and any copies. Any use of the message by you is prohibited. 
-------------- next part --------------
An embedded and charset-unspecified text was scrubbed...
Name: maker.debug
URL: <http://box290.bluehost.com/pipermail/maker-devel_yandell-lab.org/attachments/20121208/abf67fbf/attachment.ksh>
-------------- next part --------------
An embedded and charset-unspecified text was scrubbed...
Name: maker_bopts.ctl
URL: <http://box290.bluehost.com/pipermail/maker-devel_yandell-lab.org/attachments/20121208/abf67fbf/attachment-0001.ksh>
-------------- next part --------------
An embedded and charset-unspecified text was scrubbed...
Name: maker_exe.ctl
URL: <http://box290.bluehost.com/pipermail/maker-devel_yandell-lab.org/attachments/20121208/abf67fbf/attachment-0002.ksh>
-------------- next part --------------
An embedded and charset-unspecified text was scrubbed...
Name: maker_opts.ctl
URL: <http://box290.bluehost.com/pipermail/maker-devel_yandell-lab.org/attachments/20121208/abf67fbf/attachment-0003.ksh>


More information about the maker-devel mailing list