[maker-devel] maker-2.23

[Rodolfo Aramayo]

I am running into an unusual problem
If I run Maker in the maker01 directory, say "/Volumes/g0006/maker/maker01"
things go well no problem so far...but if I start a second maker inside the
maker02 directory: "/Volumes/g0006/maker/maker02"
the second maker quits with a: "[3]+  Abort trap              nohup maker"
and in the nohup file I see the following:

##########################################################################################################
...
...
...
...
#-------------------------------#
re reading genemark report.
/Volumes/a0005/02SK4_01assembly_total_final_1000-10000/SK4_01assembly_total_final_1000-10000.maker.output/SK4_01assembly_total_final_1000-10000_datastore/C6/70/NODE_2_length_2929_cov_50.101059//theVoid.NODE_2_length_2929_cov_50.101059/NODE_2_length_2929_cov_50%2E101059.all.Ralstonia_solanacearum%2Emod.genemark
running  genemark.
#--------- command -------------#
Widget::genemark:
/opt/local/bin/perl
/usr/local/bioinfosoft/maker-2.23/bin/../lib/Widget/genemark/gmhmm_wrap -m
/Volumes/a0003/bioinfodata/genemark/hmm/Ralstonia_solanacearum_plasmid_pGMI1000MP.mod
-g /usr/local/bioinfosoft/genemark/gmhmmp -p
/usr/local/bioinfosoft/genemark/probuild -o
/Volumes/a0005/02SK4_01assembly_total_final_1000-10000/SK4_01assembly_total_final_1000-10000.maker.output/SK4_01assembly_total_final_1000-10000_datastore/C6/70/NODE_2_length_2929_cov_50.101059//theVoid.NODE_2_length_2929_cov_50.101059/NODE_2_length_2929_cov_50%2E101059.all.Ralstonia_solanacearum_plasmid_pGMI1000MP%2Emod.genemark
/Volumes/a0005/02SK4_01assembly_total_final_1000-10000/SK4_01assembly_total_final_1000-10000.maker.output/SK4_01assembly_total_final_1000-10000_datastore/C6/70/NODE_2_length_2929_cov_50.101059//theVoid.NODE_2_length_2929_cov_50.101059/query.fasta
#-------------------------------#
formating database...
#--------- command -------------#
Widget::formater:
/usr/local/bin/makeblastdb -dbtype prot -in
/tmp/maker_hZ_8Uc/uniprot_sprot%2Efasta.mpi.10.0
#-------------------------------#
running  blast search.
#--------- command -------------#
Widget::blastx:
/usr/local/bin/blastx -db /tmp/maker_hZ_8Uc/uniprot_sprot%2Efasta.mpi.10.0
-query /tmp/maker_hZ_8Uc/rank0/NODE_2_length_2929_cov_50%2E101059.0
-num_alignments 10000 -num_descriptions 10000 -evalue 1e-06 -dbsize 300
-searchsp 20000000 -num_threads 7 -seg yes -soft_masking true
-lcase_masking -show_gis -out
/Volumes/a0005/02SK4_01assembly_total_final_1000-10000/SK4_01assembly_total_final_1000-10000.maker.output/SK4_01assembly_total_final_1000-10000_datastore/C6/70/NODE_2_length_2929_cov_50.101059//theVoid.NODE_2_length_2929_cov_50.101059/NODE_2_length_2929_cov_50%2E101059.0.uniprot_sprot%2Efasta.blastx.temp_dir/uniprot_sprot%2Efasta.mpi.10.0.blastx
#-------------------------------#
deleted:97 hits
perl(12478) malloc: *** error for object 0x1033bada0: pointer being freed
was not allocated
*** set a breakpoint in malloc_error_break to debug
perl(12478) malloc: *** error for object 0x1033b9c18: incorrect checksum
for freed object - object was probably modified after being freed.
*** set a breakpoint in malloc_error_break to debug
perl(12478) malloc: *** error for object 0x1033b9c18: incorrect checksum
for freed object - object was probably modified after being freed.
*** set a breakpoint in malloc_error_break to debug
perl(12478) malloc: *** error for object 0x1033b9c18: incorrect checksum
for freed object - object was probably modified after being freed.
*** set a breakpoint in malloc_error_break to debug
perl(12478) malloc: *** error for object 0x1033b9c18: incorrect checksum
for freed object - object was probably modified after being freed.
*** set a breakpoint in malloc_error_break to debug
perl(12478) malloc: *** error for object 0x1033b9c18: incorrect checksum
for freed object - object was probably modified after being freed.
*** set a breakpoint in malloc_error_break to debug
perl(12478) malloc: *** error for object 0x1033b9c18: incorrect checksum
for freed object - object was probably modified after being freed.
*** set a breakpoint in malloc_error_break to debug
perl(12478) malloc: *** error for object 0x1033b9c18: incorrect checksum
for freed object - object was probably modified after being freed.
*** set a breakpoint in malloc_error_break to debug
perl(12478) malloc: *** error for object 0x1033b9c18: incorrect checksum
for freed object - object was probably modified after being freed.
*** set a breakpoint in malloc_error_break to debug

##########################################################################################################

I am using Maker 2.23

I see this problem in Maker with and without mpich2 compilation
I am using:

Perl 5, version 12, subversion 3 (v5.12.3) built for
darwin-thread-multi-2level


Any ideas?

Thanks
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