[maker-devel] change the PATH to gmhmm_wrap

[Christoph Hahn]

Dear MAKER developers and users,

I am new to MAKER and during my first attempts I unfortunately 
encountert some problems. It would be great if anyone could help me out!
Here's my problem:
I have used gm_es.pl from Genemark to create es.mod for my assembly. I 
would like to give this model to MAKER, so I add the path to es.mod in 
the maker_opts.ctl file at gmhmm. So far so good. Unfortunately, when I 
am running maker it cannot find the gmhmm_wrap script. Here s what it says:

#-------------------------------#
Can't open perl script 
"/xanadu/site/common/VERSIONS/perl-1.7/bin/../lib/Widget/genemark/gmhmm_wrap": 
No such file or directory
ERROR: Genemark failed

Apparently it is looking for the script in the wrong place. I have found 
it in:
/site/VERSIONS/perl-1.7/perl/lib/MAKER/Widget/genemark/gmhmm_wrap
The other paths are correct.

Is there a way to manually tell Maker where to look for this script? I 
should mention also that I have maker (2.10) running on a cluster.

Any help is highly appreciated! Thanks in advance!!

much obliged,
Christoph

University of Oslo