[maker-devel] Passing extra options to augustus in maker?

[Fourie Joubert]

Hi

Could anyone advise me regarding passing additional options to augustus 
when running maker?

I have generated a series of hints files 
(http://bioinf.uni-greifswald.de/bioinf/wiki/pmwiki.php?n=Augustus.IncorporateProteins) 
that work fine when running augustus stand-alone, but would like to be 
able to pass the necessary parameters to augustus when running maker so 
that augustus uses the hints files.

Alternatively, if I need to run augustus stand-alone with the hints 
files, which option should I use to load the resulting augustus gff 
files into maker (protein_gff, other_gff, ...)?

Thanks and regards!

Fourie

-- 
--------------
Prof Fourie Joubert
Bioinformatics and Computational Biology Unit
Department of Biochemistry
University of Pretoria
fourie.joubert at up.ac.za
http://www.bi.up.ac.za
Tel. +27-12-420-5825
Fax. +27-12-420-5800

-------------------------------------------------------------------------
This message and attachments are subject to a disclaimer. Please refer
to www.it.up.ac.za/documentation/governance/disclaimer/ for full details.