[maker-devel] Transcriptome assembly annotation?

[Carson Holt]

Never tried it, but I think I would probably just skip maker and perhaps
do something like run cufflinks or trinity followed by intperproscan and
blast2go.  There is a wrapper for interproscan packaged with MAKER that
might be useful.

--Carson

On 12-07-06 12:19 AM, "Fields, Christopher J" <cjfields at illinois.edu>
wrote:

>Just curious, but I haven't found the answer to this in the mail list.
>Has anyone used MAKER for transcriptome annotation?  Obviously the ab
>initio gene predictors wouldn't make much sense, but I could see a tool
>like ESTScan or similar acting in a similar capacity.
>
>chris
>
>Chris Fields
>Technical Lead in Genome Informatics
>High Performance Computing in Biology
>W.M. Keck Center for Comparative and Functional Genomics
>Institute for Genomic Biology
>
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