[maker-devel] cluster error running maker

[Walter Eckalbar]

Hi everyone,

I have been retrying installing maker on our university cluster, everything
seems to install correctly, but when I run maker I find the following error
message:

Ran into unknown state (hex char: 29) at
/home/weckalba/RNAseq/maker/lib/File/..//Proc/Signal.pm line 94.
A data structure will be created for you at:
/scratch/weckalba/Maker/genome.maker.output/genome_datastore

To access files for individual sequences use the datastore index:
/scratch/weckalba/Maker/genome.maker.output/genome_master_datastore_index.log

DBD::SQLite::db do failed: disk I/O error at
/home/weckalba/RNAseq/maker/bin/../lib/GFFDB.pm line 88.
DBD::SQLite::db selectcol_arrayref failed: disk I/O error at
/home/weckalba/RNAseq/maker/bin/../lib/GFFDB.pm line 90.
DBD::SQLite::db do failed: disk I/O error at
/home/weckalba/RNAseq/maker/bin/../lib/GFFDB.pm line 92.
DBD::SQLite::db do failed: disk I/O error at
/home/weckalba/RNAseq/maker/bin/../lib/GFFDB.pm line 161.


Seems to have something to do with permissions and DBD::SQLite.  I
installed DBD::SQLite on my own home directories and routed the perl path
to it (and other CPAN installs in the same directories).

I was wondering if anyone ever encountered this before and knew a work
around.  The admins for our cluster are unfortunately very slow to respond.

Thanks

Walter
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