[maker-devel] Rerunning Maker

[Ian Misner]

Hello,

I have run maker 2.03 on a genome that we assembled a while back.  Now we have a new genome assembly.  Is there a way to rerun maker with the new assembly without losing all of the annotations I've done on the v2.03 predicted proteins?  I see the genome_gff option but all the contig numbers will have changed with the new assembly so that will not work.  The EST data will be the same as before.  From my original run I used a related species for protein homology, this time would I use the predicted set I have been working with?  Worst case scenario I need a way to link the old proteins with the new ones which I could do with BLAST post Maker but I'm hoping there is a better way.  Any help with this would be greatly appreciated.  


Cheers
Ian

*************************************
Mr. Ian Misner
PhD. Candidate
Department of Biological Sciences
University of Rhode Island
120 Flagg Road
Kingston, RI 02881
Office: CBLS 260
Ph: 1-401-874-9726
fax (401) 874-2065
ianmisner at my.uri.edu
http://cels.uri.edu/bio/lanelab/