[maker-devel] question about augustus hints file

Jie njauxiongjie at gmail.com
Fri Mar 2 19:38:50 MST 2012


Hi, all

I have aligned my EST to my genome and want to use the EST alignment
as hints of augustus. The command I run like your README file in
AUGUSTUS, and like bellow:

blat -minIdentity=92 genome.fa cdna.fa cdna.psl
blat2hints.pl --in=cdna.psl --out=hints.E.gff

but when I feed the hint file to augustus, it appeared some error like
bellow:
augustus: ERROR        FeatureCollection::esource: invalid source key:
E

How can I solve this problem?




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