[maker-devel] Error: Chunk failed at level

[Ian Misner]

Hello,

I've run maker with RM, SNAP, and gmhmm on my novel genome and I've some very large contigs that haven't annotated any proteins.  I have looked through the output from the run and of the 74 contigs that failed I only have three errors.

They are Chunk failed at level 3, 8, & 16

What are those errors?  How can I get the annotations for these failed runs to work?  I have the entire output if you would need to see that file.  In my opts ctl file I set it to retry failed contigs 2 times and do a fresh run each time.  All 74 contigs failed all 3 attempts to run.  Any help would be much appreciated.

Cheers
Ian


*************************************
Mr. Ian Misner
PhD. Candidate
Department of Biological Sciences
University of Rhode Island
120 Flagg Road
Kingston, RI 02881
Office: CBLS 260
Ph: 1-401-874-9726
fax (401) 874-2065
ianmisner at my.uri.edu
http://cels.uri.edu/bio/lanelab/