[maker-devel] Error: Can't call method "num_hsps" on unblessed reference

Seoane Zonjic seoanezonjic at hotmail.com
Thu Mar 22 03:38:39 MDT 2012


Hi!
First, sorry for my poor english. I updated Maker at last release and
I have triying it with a set of contigs. With one of contigs, Maker
give me this error:

Processing transcripts into genes
Calculating annotation quality statistics
Can't call method "num_hsps" on unblessed referenceERROR: Failed while
adding statistics to annotations
ERROR: Chunk failed at level:3, tier_type:3
FAILED CONTIG:contig_4_0

ERROR: Chunk failed at level:7, tier_type:0
FAILED CONTIG:contig_4_0

At first, I thought that problem were the length of contig (125Kb). I
cut the the sequence in parts of 10Kb but a part again give me the
same error. I have worked with the debugger version of maker (I took
it of post of segmentation fault).
The input fasta (the part that failed me) and all logs are in this
link:
http://dl.dropbox.com/u/54903225/log.tar.gz
Other contigs of same set,  bigger or equal, work fine without
problem. There are something in this sequence that broken the Maker
run.
Thanks in advance




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