[maker-devel] FW: Can't call method "start" on an undefined value

[Carson Holt]

Ok.  This is fixed (along with a few other things), and is available for
download as MAKER 2.25.

Thanks,
Carson



From:  Evan <eernst at cshl.edu>
Date:  Mon, 26 Mar 2012 09:29:45 -0700 (PDT)
To:  <maker-devel at googlegroups.com>
Subject:  [maker-devel] Can't call method "start" on an undefined value

Hi,

I'm running maker 2.24-beta. At least 10-15% of scaffolds are failing with
the following error:

Preparing evidence for hint based annotation
cleaning clusters....
total clusters:1 now processing 0
in cluster::shadow_cluster...
...finished clustering.
cleaning clusters....
total clusters:4 now processing 0
 ...processing 0 of 3
 ...processing 1 of 3
total clusters:4 now processing 0
 ...processing 0 of 2
total clusters:4 now processing 0
total clusters:4 now processing 0
Can't call method "start" on an undefined valueERROR: Failed while preparing
evidence clusters for annotations
ERROR: Chunk failed at level:0, tier_type:3
FAILED CONTIG:scaffold93.1

ERROR: Chunk failed at level:7, tier_type:0
FAILED CONTIG:scaffold93.1

This occurs when running just a single maker instance.

Thanks,
Evan
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