[maker-devel] Error: Chunk failed at level

[Carson Holt]

Those are the very last messages in a series of error handlers.  Look
further up the report, the errors triggering the handler should be further
back.  If your'e running parallel,  the other errors may be way back up
the report.  Also which version of MAKER are you using?

You can send my any failed contigs, the maker control files and any other
datasets/files you are using if you want me to take a look as well.

Thanks,
Carson



On 12-03-08 9:15 AM, "Ian Misner" <ianmisner at my.uri.edu> wrote:

>Hello,
>
>I've run maker with RM, SNAP, and gmhmm on my novel genome and I've some
>very large contigs that haven't annotated any proteins.  I have looked
>through the output from the run and of the 74 contigs that failed I only
>have three errors.
>
>They are Chunk failed at level 3, 8, & 16
>
>What are those errors?  How can I get the annotations for these failed
>runs to work?  I have the entire output if you would need to see that
>file.  In my opts ctl file I set it to retry failed contigs 2 times and
>do a fresh run each time.  All 74 contigs failed all 3 attempts to run.
>Any help would be much appreciated.
>
>Cheers
>Ian
>
>
>*************************************
>Mr. Ian Misner
>PhD. Candidate
>Department of Biological Sciences
>University of Rhode Island
>120 Flagg Road
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>fax (401) 874-2065
>ianmisner at my.uri.edu
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