[maker-devel] maker gff3 to genbank tbl/gbk

[Joe Wilders]

Hi Carson,
Thank you very much for your suggestion, will try that up and let you know.

by the way i did found this in one of the revisions at the svn
http://malachite.genetics.utah.edu/projects/maker/browser/bin/gff3_2_gbk?rev=217
,
i wonder why it gets pulled out on the later revision..


On Mon, Mar 19, 2012 at 6:21 AM, Carson Holt <carsonhh at gmail.com> wrote:

> Try using Apollo.  You can open up GFF3 files and them save them as
> GenBank format.  That might be sufficient.
>
> Alternatively.  I've attached a script that can convert SNAP's ZFF format
> to GeneBank.  You could then use the maker2zff that comes with MAKER to
> convert results to ZFF and then this script to get GenBank format.
>
> Thanks,
> Carson
>
> On 12-03-14 1:31 AM, "Joe Wilders" <joe.wilders at gmail.com> wrote:
>
> >Dear MAKER experts,
> >
> >i hope that you can share your expertise regarding, conversion of
> >maker gff3 to genbank tbl or gbk. im trying to produce a working
> >genbank tbl, i tried converting to chado using maker2chado and
> >gmodtools genbanksubmit writer. but so far it doesnt end well. most
> >probably due to xml configuration(which im really loss, especially
> >defining the "goldenpath") .is there any other way to produce the tbl
> >from maker output?
> >
> >thanks :)
> >
> >Joe Wilders
> >
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> >http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>
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