[maker-devel] Error: Can't call method "num_hsps" on unblessed reference

[Carson Holt]

Could you make a tarball of this directory and send it to me exactly as is
 --> 
/export/home_users/home/cvi_114_uma/pedro/testmaker/Spliced2.maker.output/S
pliced2_datastore/72/86/contig_4_0/

Thanks,
Carson


On 12-03-22 5:38 AM, "Seoane Zonjic" <seoanezonjic at hotmail.com> wrote:

>Hi!
>First, sorry for my poor english. I updated Maker at last release and
>I have triying it with a set of contigs. With one of contigs, Maker
>give me this error:
>
>Processing transcripts into genes
>Calculating annotation quality statistics
>Can't call method "num_hsps" on unblessed referenceERROR: Failed while
>adding statistics to annotations
>ERROR: Chunk failed at level:3, tier_type:3
>FAILED CONTIG:contig_4_0
>
>ERROR: Chunk failed at level:7, tier_type:0
>FAILED CONTIG:contig_4_0
>
>At first, I thought that problem were the length of contig (125Kb). I
>cut the the sequence in parts of 10Kb but a part again give me the
>same error. I have worked with the debugger version of maker (I took
>it of post of segmentation fault).
>The input fasta (the part that failed me) and all logs are in this
>link:
>http://dl.dropbox.com/u/54903225/log.tar.gz
>Other contigs of same set,  bigger or equal, work fine without
>problem. There are something in this sequence that broken the Maker
>run.
>Thanks in advance
>
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