[maker-devel] Problem with RMBlast installation

[Jason Stajich]

Hi Daniel -

Just download, unpackage the precompiled ( rmblast-1.2-ncbi-blast-2.2.23+-x64-linux.tar.gz ) version and tell RepeatMasker where the exes are when you configure RepeatMasker.  RMBlast is for RepeatMasker.
 
For running BLAST in MAKAER would install NCBI-BLAST+ if you don't have wu-blast --- ftp://ftp.ncbi.nih.gov/blast/executables/blast+/LATEST - I believe current maker supports BLAST+, BLAST, and WU-BLAST so you have your pick.

Jason
On Mar 25, 2012, at 7:53 PM, Daniel Fernández wrote:

> Hi,
> 
> I trying to install MAKER, I don't have WU-Blast, I have Blast+ so in the README file tell me that I need RMBlast, but I don't know what file I have to choose, rmblast-1.2-ncbi-blast-2.2.23+-src.tar.gz or rmblast-1.2-ncbi-blast-2.2.23+-x64-linux.tar.gz (I have Linux 64-bit) in each version the README file is the same, and there tell me how I can install it, but the instructions is only for rmblast-1.2-ncbi-blast-2.2.23+-src, well, when I try to install it, I type this 
> $./configure --with-mt --prefix=/usr/local/bioinfo/repeatmasker/rmblast --without-debug
> This show me error, and I type make and this show stop.
> 
> Can you help me please?
> 
> This show me when I type $./configure --with-mt --prefix=/usr/local/bioinfo/repeatmasker/rmblast --without-debug
> -----------------------------------------------------------------------------------------------------------------------------------------------
> configure: loading site script ./src/build-system/config.site
> configure: loading cache config.cache
> checking build system type... x86_64-unknown-linux-gnu
> checking host system type... x86_64-unknown-linux-gnu
> checking for a BSD-compatible install... /usr/bin/install -c
> checking for gcc... gcc
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables... 
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ANSI C... none needed
> checking for g++... no
> checking for c++... no
> checking for gpp... no
> checking for aCC... no
> checking for CC... no
> checking for cxx... no
> checking for cc++... no
> checking for cl... no
> checking for FCC... no
> checking for KCC... no
> checking for RCC... no
> checking for xlC_r... no
> checking for xlC... no
> checking whether we are using the GNU C++ compiler... no
> checking whether g++ accepts -g... no
> adjusted C   compiler: /usr/bin/gcc 
> ./src/build-system/configure: line 4404: type: g++: not found
> dirname: missing operand
> Try `dirname --help' for more information.
> configure: error: Do not know how to build MT-safe with compiler g++ ./src/build-system/configure: line 4187: g++: command not found
> -----------------------------------------------------------------------------------------------------------------------------------
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Jason Stajich
jason.stajich at gmail.com
jason at bioperl.org

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