[maker-devel] maker_functional_gff

[Carson Holt]

It should work with NCBI BLAST as long as it is the optional tab delimited
format, and not the standard raw format report.

The report must be generated from UniProt/Swiss-prot formatted fasta files.

Here is an example of the header format for the fasta file -->
>sp|P18560|1101L_ASFB7 Protein MGF 110-1L OS=African swine fever virus
>(strain Badajoz 1971 Vero-adapted) GN=BA71V-008 PE=3 SV=1

This ia a description of what maker_functional_gff is looked for
>transcript_ID  Description  OS=species  GN=gene_name
>PE=any_text_from_this_point_on_is_ignored

Thanks,
Carson




On 12-03-28 2:34 PM, "Thiru Ramaraj" <tr at ncgr.org> wrote:

>Hi All,
>
>I am in the process of using maker_functional_gff script th generate
>functional gff file. I was wondering if NCBI BLAST tab delimited output
>will work as it is or there any formatting needed to be  more like a
>WUBLAST output.
>
>Any thoughts would be greatly appreciated.
>
>Thanks,
>-Thiru
>
>_______________________________________________
>maker-devel mailing list
>maker-devel at box290.bluehost.com
>http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org