[maker-devel] missing est2genome annotation

[Thomas Hackl]

Hi again,

I did some source code digging and caught the following line burying my 
exonerate alignments. I suspect it does so for a very good reason, 
therefore it would help me a lot if someone could explain to me, what is 
going on there.


/lib/GI.pm  l.1473
next if $e->pAh<  $pcov;


Regards
Thomas


Am 23.05.2012 14:01, schrieb Thomas Hackl:
> Hi,
>
> I used maker to annotate genomic contigs and among other stuff 
> provided transcripts from the transcriptome as est evidence. Blast and 
> exonerate work fine and produce valid alignments, the alignment files 
> exist in theVoid and look very good. Unfortunatly neither the 
> evidence_0.gff nor the final .gff carry the corresponding feature 
> annotations.
>
> Any ideas why?
>
> Regards
> Thomas
>


-- 
Thomas Hackl
Julius-Maximilians-Universität
Department of Bioinformatics
97074 Würzburg, Germany
Fon:  +49 931 - 31 86883
Mail: thomas.hackl at uni-wuerzburg.de