[maker-devel] AED score

[Parul Kudtarkar]

Dear Maker community,

For gene-prediction I get training data-set from evidence based
prediction, I use this data-set to train SNAP as well as Augustus
predictions, followed by boot-strapping. I would typically expect 20-30K
genes however I am getting 8 times the expected gene count indicating too
many false positives. Is there a way to further refine these
predication/script to retain predictions with AED score 1 and if yes how
to go about this?

Thanks and regards,
Parul Kudtarkar

--
Scientific Programmer
Center for Computational Regulatory Genomics
Beckman Institute,
California Institute of Technology
http://www.spbase.org