[maker-devel] Problem with maker_map_ids

[Ian Misner]

Hello,

I'm trying to create human friendly ids and I'm getting an error when I use the -sort_file option. Without the sort file it runs fine just not numbered from the first contig. I have had some programers at our cluster look at the script and they attempted a fix but it did not work. They mentioned the script was "buggy" so this might be part of the problem. I've attached the error as well as the sort file. I can send more files if necessary. Thanks for you time.

Cheers
Ian

$ maker_map_ids --prefix THRCLA_ --justify 5 --sort_order 34112_sort.txt 34112_3June11Ass.gff > 34112_3June11Ass_named.txt 
Can't use string ("34112_sort.txt") as a HASH ref while "strict refs" in use at /gpfs/runtime/opt/maker/2.10/maker/bin/maker_map_ids line 311, <$IN> line 499186.
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