[maker-devel] Maker Re-tries

[Carson Holt]

Killing a job yourself should not increase the failure count for a contig.

Thanks,
Carson


From:  Kipp Johnson <kippjohnson at uchicago.edu>
Date:  Tuesday, 21 August, 2012 5:25 PM
To:  Carson Holt <carsonhh at gmail.com>
Cc:  Kipp Johnson <kippjohnson at uchicago.edu>, <maker-devel at yandell-lab.org>
Subject:  Re: Maker Re-tries

Hi Carson,

Simple question: If I start maker and then kill the job before a thread
finishes processing a contig, does this failure to complete the contig count
in the number of tries maker will try to complete the contig before skipping
to another? 

Basically, does the "tries=2 #number of times to try a contig if there is a
failure for some reason" parameter take into account failures resulting from
me killing the job?


Best,

Kipp Johnson
kippjohnson at uchicago.edu



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