[maker-devel] Problem with maker_map_ids

[Carson Holt]

Could you also provide 34112_3June11Ass.gff?

Thanks,
Carson


On 12-09-25 8:31 AM, "Ian Misner" <ianmisner at my.uri.edu> wrote:

>Hello,
>
>I'm trying to create human friendly ids and I'm getting an error when I
>use the -sort_file option. Without the sort file it runs fine just not
>numbered from the first contig. I have had some programers at our cluster
>look at the script and they attempted a fix but it did not work. They
>mentioned the script was "buggy" so this might be part of the problem.
>I've attached the error as well as the sort file. I can send more files
>if necessary. Thanks for you time.
>
>Cheers
>Ian
>
>$ maker_map_ids --prefix THRCLA_ --justify 5 --sort_order 34112_sort.txt
>34112_3June11Ass.gff > 34112_3June11Ass_named.txt
>Can't use string ("34112_sort.txt") as a HASH ref while "strict refs" in
>use at /gpfs/runtime/opt/maker/2.10/maker/bin/maker_map_ids line 311,
><$IN> line 499186._______________________________________________
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