[maker-devel] genemark .mod file for yeast

[xu zhang]

Hi All,

Does anybody have genemark .mod file for yeast? I tried to create my own 
model file using this command" gm_es.pl 
S288C_reference_sequence_R64-1-1_20110203.fsa", where the sequence was 
downloaded from ncbi". it failed with this error "
warning, error in input file format:
-3
error reading parameter BRANCH_MAT
error in model file 
/gscmnt/gc2124/info/annotation/personal_dir/xzhang/yeast/s_cerevisiae/genemark/training2/mod/es.mod
Error on system: prediction step" and "Error: unknown line format".

and I tried the sample file(pythium_ultimum_scaffolds.fasta) from 
Carson. a mod file was created, although it also had some error information
" warning, error in input file format:
-13
5654 dna.fa.good.gb.acc.ph2
first order for ACC 2
Error: unknown line format
        GC%    ntron".

any suggestion and comments are appreciated

Thanks,
Xu