[maker-devel] repeat statistics

[Ross, Eric]

Does anyone have a good tool for yanking repeat statistics out of MAKER
gff files?

SOBA can give some basic stats, but it doesn't play well with my giant
files and I haven't figured out a way to run it locally.

For that matter does anyone have a script that will calculate SOBA like
stats locally?  I'd rather avoid writing one myself if something else is
out there.

Thanks,

Eric

--
Eric Ross
Bioinformatic Specialist I
Alejandro Sánchez Alvarado Laboratory
Stowers Institute for Medical Research
Howard Hughes Medical Institute
ejr at stowers.org