[maker-devel] CDS retrieve from augustus_masked

[Michael Thon]

Hi Kang - After running fasta_merge there should be a file:

[prefix].all.maker.augustus_masked.transcripts.fasta

in the output directory.  Is that what you need?
Mike

On Apr 6, 2013, at 9:25 AM, "Kang, Yang Jae" <kangyangjae at gmail.com> wrote:

> Dear everyone!
>  
> I want to retrieve CDS sequences from the output of maker; however, in the augustus_masked feature there is no indication of CDS or Exon like maker features. Is there any way for me to retrieve CDS from augustus_masked? There were protein sequences in outdir but no CDS information.
>  
> Thank you!
>  
> Kang, Yang Jae
> Ph.D.
> Cropgenomics Lab.
> College of Agriculture and Life Science
> Seoul National University
> Korea
>  
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