[maker-devel] empty maker2zff output

[mun hua]

Hi,

I noticed that this empty output may be because I am only using SwissProt
protein sequences as evidence, because I do not have any EST or transcript
data generated for my organism.

My question is, how does one proceed to train and generate final annotation
starting with only the assembled genome sequence and UniProt/SwissProt
sequences?

Please advise.

Thanks very much.


On Mon, Dec 2, 2013 at 11:53 AM, mun hua <mh.tan85 at gmail.com> wrote:

> Hi
>
> I'm trying to create training data for SNAP using the maker2zff script
> that comes with the maker package version 2.28.
> I'm having the same problem as mentioned in this post:
> https://groups.google.com/forum/#!searchin/maker-devel/maker2zff/maker-devel/_Pq65Fb761U/s826h5lSxnYJ
> My genome.ann and genome.dna files are empty, but no errors were printed.
>
> Any advice on this?
>
> Thanks.
> Mun Hua
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20131202/a9d1a87b/attachment-0003.html>