[maker-devel] About maker2zff

[Carson Holt]

The reason it is empty is either because your input file had no genes
(check for gene/mRNA/exon/CDS type features), or the genes do not pass one
of the filtering thresholds.  You can try setting those thresholds
manually, one of the filters (I believe AED) can¹t be set in 2.28 (even
though it says it can), but can be set in 2.29 and 2.30, so you might want
to download that version and try lowing individual filters to find which
want is trimming all your results.

‹Carson



On 12/18/13, 5:21 PM, "Won C Yim" <wyim at unr.edu> wrote:

>Dear anyone whom may it concern,
>
>Hi!
>
>I am Won Cheol Yim at University of Nevada.
>
>I'm trying to create training data for SNAP using the maker2zff script
>that comes with the maker package version 2.28.
>
>I'm having the same problem as mentioned in this post:
>https://groups.google.com/forum/#!searchin/maker-devel/maker2zff/maker-dev
>el/_Pq65Fb761U/s826h5lSxnYJ
>
>My genome.ann and genome.dna files are empty, but no errors were printed.
>
>Can you help me to process it?
>
>I attached my gff file.
>
>Thank you.
>
>Won
>
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