[maker-devel] perl

[Carson Holt]

Did you run './Build install' after running '/opt/perl/bin/perl Build.PL '
to overwrite the old scripts?  You may have to  delete the /maker/bin
directory before running './Build install' to guarantee that they are
overwritten.

PS.  I'm glad the shebang line could brighten your day.

Thanks,
Carson


From:  Joanna Kelley <jokelley at stanford.edu>
Date:  Wednesday, 27 February, 2013 12:53 AM
To:  Carson Holt <carsonhh at gmail.com>
Cc:  <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] perl

Hi Carson, 

First, I just learned the term shebang line, that's awesome!
Second, what you said isn't the case, because I ran;

[jokelley at scg3-ln01 src ]$ /opt/perl/bin/perl Build.PL
[jokelley at scg3-ln01 src ]$ grep "/usr/bin/perl" */*
...
bin/maker:#!/usr/bin/perl
bin/maker2chado:#!/usr/bin/perl
bin/maker2eval_gtf:#!/usr/bin/perl
bin/maker2jbrowse:#!/usr/bin/perl
...

So it's not using the /opt/perl/bin/perl

any other ideas for changing that?
Because it's not working.

On Tue, Feb 26, 2013 at 5:47 PM, Carson Holt <carsonhh at gmail.com> wrote:
> The shebang line (#!) should use whatever perl was used in the "perl Build.PL"
> step of the configuration.  Then "Build install" will overwrite the existing
> scripts with the ones using a different perl.
> 
> --Carson
> 
> 
> From:  Joanna Kelley <jokelley at stanford.edu>
> Date:  Tuesday, 26 February, 2013 5:11 PM
> To:  <maker-devel at yandell-lab.org>
> Subject:  [maker-devel] perl
> 
> Hello, 
> 
> Is there an easy way to change the
> hard coding of #!/usr/bin/perl
> to another perl location in the
> configuration / installation of maker?
> 
> Thanks, 
> Joanna
> 
> 
> 
> -- 
> Joanna L. Kelley, PhD
> Department of Genetics
> Stanford School of Medicine
> 300 Pasteur Drive
> Lane Building, Room L-333
> Stanford, CA 94305-5120
> jokelley at stanford.edu
> 
> _______________________________________________ maker-devel mailing list
> maker-devel at box290.bluehost.comhttp://box290.bluehost.com/mailman/listinfo/mak
> er-devel_yandell-lab.org



-- 
Joanna L. Kelley, PhD
Department of Genetics
Stanford School of Medicine
300 Pasteur Drive
Lane Building, Room L-333
Stanford, CA 94305-5120
jokelley at stanford.edu





-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20130227/a5ebc3a3/attachment-0003.html>