[maker-devel] BLAST options error

[Kapeel Chougule]

Hi,

I had this error for one of the chromosomes:

BLAST options error:
/opt/kapeel/maker_runs/leersia/chr11/Chr11.maker.output/Chr11_datastore/1E/AA/Chr11//theVoid.Chr11/comp84263_c0_seq4.for_blastn.fasta
does not match input format type, default input type is FASTA
ERROR: Failed while collecting blastn reports
ERROR: Chunk failed at level:1, tier_type:2
FAILED CONTIG:Chr11

ERROR: Chunk failed at level:5, tier_type:0
FAILED CONTIG:Chr11

examining contents of the fasta file and run log


--Next Contig--

Processing run.log file...
MAKER WARNING: The file
Chr11.maker.output/Chr11_datastore/1E/AA/Chr11//theVoid.Chr11/Chr11.286769.311208.0.comp84263_c0_seq4%2Efor_blastn%2Efasta.blastn
did not finish on the last run and must be erased


Maker is now finished!!!

I checked the comp84263_c0_seq4.for_blastn.fasta file for any spaces
before > symbol in the header  section, it seems to be ok with that.

Any suggestions?

Thank you,
-- 

Kapeel Chougule
Systems Programmer
Arizona Genomics Institute (AGI)
Thomas W. Keating Bioresearch Building
University of Arizona
1657 E. Helen Street
Tucson, AZ 85719
www.genome.arizona.edu