[maker-devel] MAKER just won't quit?

[Jacqueline R M Doyle]

Hello Maker Developers!

I have a quick question... I've been using MAKER to annotate a genome (it has been running for about 6 days with 48 cpus).  Many of my contigs have failed, surely because most of them are smaller than the 10 kb limit I set, which is fine.  My concern is that although I've set tries = 2, the index log seems to indicate that MAKER is on its fourth try for some of the contigs (see attached).  Is is safe to shut MAKER down, or are there clean-up steps at the end of the annotation process that need to be allowed to occur?  Oh, and I'm using MAKER 2.28.

Best, Jacqueline


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