[maker-devel] RNA-seq data for MAKER2

yuharas at takara-bio.co.jp yuharas at takara-bio.co.jp
Wed Jul 10 20:27:12 MDT 2013


Dear developers

I'm considering using MAKER2 to annotate plant genome (~1Gb) I've assembled using illumina HiSeq data.
And I'm planning to obtain mRNA-seq data by using HiSeq.
Do you have any recommendation of sequencing depth of RNA-seq data for using MAKER2 annotation pipeline?

Thanks,
Satoshi





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